Query psy18026
Match_columns 246
No_of_seqs 258 out of 1371
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 20:35:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3571|consensus 100.0 1.3E-64 2.7E-69 468.4 12.5 216 4-242 217-433 (626)
2 PF00595 PDZ: PDZ domain (Also 99.6 1.6E-15 3.6E-20 111.0 10.4 81 38-123 1-81 (81)
3 KOG3549|consensus 99.6 5.6E-15 1.2E-19 133.5 10.7 111 29-146 48-158 (505)
4 KOG3550|consensus 99.6 4.8E-15 1E-19 120.2 8.2 84 35-124 90-173 (207)
5 KOG3209|consensus 99.5 2.3E-13 5.1E-18 131.8 10.3 93 26-124 889-981 (984)
6 KOG3551|consensus 99.4 2.7E-12 5.8E-17 117.5 10.5 84 36-124 85-168 (506)
7 KOG3209|consensus 99.4 3.2E-12 7E-17 124.1 11.4 121 35-163 649-770 (984)
8 cd00992 PDZ_signaling PDZ doma 99.2 1.2E-10 2.7E-15 84.4 11.3 80 37-122 2-81 (82)
9 KOG3553|consensus 99.2 2.8E-11 6.1E-16 91.8 7.9 96 24-124 4-115 (124)
10 KOG1892|consensus 99.2 4.6E-11 9.9E-16 119.0 11.3 86 34-124 932-1018(1629)
11 smart00228 PDZ Domain present 99.2 7.4E-10 1.6E-14 80.4 11.6 82 36-124 2-83 (85)
12 KOG3580|consensus 99.1 2.2E-10 4.8E-15 109.9 8.8 86 34-124 7-96 (1027)
13 cd00136 PDZ PDZ domain, also c 99.1 7.2E-10 1.6E-14 78.3 9.4 68 48-122 2-69 (70)
14 KOG3651|consensus 99.1 5.7E-10 1.2E-14 99.7 9.4 83 37-124 6-88 (429)
15 KOG3606|consensus 98.8 1.1E-08 2.3E-13 90.4 8.0 97 25-124 147-252 (358)
16 cd00988 PDZ_CTP_protease PDZ d 98.8 3E-08 6.5E-13 72.5 8.9 71 47-125 2-72 (85)
17 PF13180 PDZ_2: PDZ domain; PD 98.8 3.7E-08 7.9E-13 72.2 9.4 71 48-125 2-72 (82)
18 KOG3605|consensus 98.8 8.1E-09 1.8E-13 100.0 6.0 90 34-125 644-734 (829)
19 KOG3552|consensus 98.8 1.1E-08 2.4E-13 102.1 6.2 89 34-135 54-143 (1298)
20 KOG3580|consensus 98.7 2.9E-08 6.4E-13 95.6 8.6 101 13-124 176-277 (1027)
21 KOG0609|consensus 98.7 6.5E-08 1.4E-12 92.3 9.1 86 35-127 122-207 (542)
22 cd04438 DEP_dishevelled DEP (D 98.7 7E-09 1.5E-13 77.2 1.8 38 203-241 2-39 (84)
23 COG0793 Prc Periplasmic protea 98.5 2.3E-07 5E-12 87.6 8.2 88 45-141 98-186 (406)
24 KOG3542|consensus 98.5 2.1E-07 4.5E-12 90.9 6.4 82 36-124 536-618 (1283)
25 PRK11186 carboxy-terminal prot 98.4 1.1E-06 2.5E-11 87.5 8.1 88 46-140 243-335 (667)
26 cd00990 PDZ_glycyl_aminopeptid 98.3 3.7E-06 8.1E-11 60.7 8.3 65 48-124 2-66 (80)
27 PLN00049 carboxyl-terminal pro 98.3 3.8E-06 8.2E-11 79.0 9.9 78 45-125 83-161 (389)
28 cd00989 PDZ_metalloprotease PD 98.3 6.4E-06 1.4E-10 59.1 8.6 58 62-124 11-68 (79)
29 cd00991 PDZ_archaeal_metallopr 98.3 7.7E-06 1.7E-10 59.5 8.7 59 62-124 9-67 (79)
30 TIGR00225 prc C-terminal pepti 98.2 5.4E-06 1.2E-10 76.2 8.6 72 46-125 50-121 (334)
31 cd00987 PDZ_serine_protease PD 98.1 3.4E-05 7.3E-10 56.5 8.6 59 62-124 23-81 (90)
32 KOG3605|consensus 98.0 6.8E-06 1.5E-10 80.1 4.4 74 35-121 736-810 (829)
33 cd00986 PDZ_LON_protease PDZ d 98.0 5.2E-05 1.1E-09 54.8 8.1 58 62-124 7-64 (79)
34 KOG1738|consensus 97.8 9.3E-05 2E-09 72.2 9.2 94 25-125 188-284 (638)
35 TIGR02037 degP_htrA_DO peripla 97.7 0.00012 2.7E-09 69.4 8.9 60 62-125 256-315 (428)
36 TIGR01713 typeII_sec_gspC gene 97.7 0.00022 4.7E-09 63.7 9.0 72 48-125 178-249 (259)
37 KOG3938|consensus 97.7 7.5E-05 1.6E-09 66.2 5.8 83 35-123 126-208 (334)
38 PRK10942 serine endoprotease; 97.6 0.00029 6.3E-09 68.0 9.4 58 62-125 407-464 (473)
39 TIGR02037 degP_htrA_DO peripla 97.6 0.00027 5.9E-09 67.1 8.5 59 63-125 362-420 (428)
40 PRK10139 serine endoprotease; 97.5 0.00043 9.4E-09 66.5 9.1 60 62-125 289-348 (455)
41 PRK10139 serine endoprotease; 97.5 0.00042 9E-09 66.6 8.2 57 63-125 390-446 (455)
42 PF04495 GRASP55_65: GRASP55/6 97.5 0.0008 1.7E-08 54.6 8.5 85 35-124 10-100 (138)
43 TIGR02038 protease_degS peripl 97.4 0.00063 1.4E-08 63.1 8.2 60 62-125 277-336 (351)
44 TIGR00054 RIP metalloprotease 97.3 0.00072 1.6E-08 64.3 8.1 59 62-125 202-260 (420)
45 PRK10898 serine endoprotease; 97.3 0.00098 2.1E-08 62.0 8.7 60 62-125 278-337 (353)
46 cd04449 DEP_DEPDC5-like DEP (D 97.3 8.9E-05 1.9E-09 54.9 1.2 33 202-235 2-34 (83)
47 PRK10942 serine endoprotease; 97.3 0.0011 2.4E-08 64.0 8.8 60 62-125 310-369 (473)
48 PRK10779 zinc metallopeptidase 97.3 0.0011 2.4E-08 63.5 8.3 59 62-125 220-278 (449)
49 cd04448 DEP_PIKfyve DEP (Dishe 97.0 0.00028 6.1E-09 52.1 1.4 37 204-241 2-38 (81)
50 KOG0606|consensus 97.0 0.0027 5.9E-08 65.8 8.5 80 39-123 630-714 (1205)
51 PRK10779 zinc metallopeptidase 97.0 0.0013 2.8E-08 63.0 5.9 58 64-125 127-184 (449)
52 TIGR02860 spore_IV_B stage IV 96.8 0.0075 1.6E-07 57.0 9.0 68 46-125 95-170 (402)
53 cd04450 DEP_RGS7-like DEP (Dis 96.7 0.00075 1.6E-08 50.4 1.6 32 204-235 2-33 (88)
54 PF14685 Tricorn_PDZ: Tricorn 96.7 0.0093 2E-07 44.7 7.2 68 48-124 2-78 (88)
55 TIGR00054 RIP metalloprotease 96.7 0.0045 9.7E-08 58.9 6.9 58 62-125 127-184 (420)
56 KOG3129|consensus 96.5 0.0074 1.6E-07 52.0 6.6 62 62-126 138-200 (231)
57 COG3975 Predicted protease wit 96.4 0.0038 8.2E-08 60.3 4.2 54 35-94 437-492 (558)
58 TIGR03279 cyano_FeS_chp putati 96.1 0.01 2.2E-07 56.6 5.7 49 67-123 2-50 (433)
59 cd04437 DEP_Epac DEP (Dishevel 95.9 0.0028 6.1E-08 50.6 0.9 36 203-239 3-38 (125)
60 KOG3532|consensus 95.7 0.032 7E-07 55.5 7.4 79 36-124 375-453 (1051)
61 PRK09681 putative type II secr 95.7 0.052 1.1E-06 48.9 8.2 44 78-125 222-265 (276)
62 COG3480 SdrC Predicted secrete 95.1 0.067 1.4E-06 49.0 6.8 64 62-130 129-192 (342)
63 COG0265 DegQ Trypsin-like seri 95.0 0.06 1.3E-06 49.6 6.4 60 62-125 269-328 (347)
64 cd04439 DEP_1_P-Rex DEP (Dishe 94.7 0.013 2.9E-07 43.2 1.0 28 207-235 6-33 (81)
65 COG3031 PulC Type II secretory 94.4 0.2 4.4E-06 44.2 7.8 64 44-125 202-265 (275)
66 KOG1421|consensus 94.3 0.12 2.6E-06 51.7 6.7 58 62-125 302-359 (955)
67 cd04442 DEP_1_DEP6 DEP (Dishev 93.8 0.028 6E-07 41.6 1.1 22 214-235 12-33 (82)
68 KOG1320|consensus 93.3 0.23 4.9E-06 48.0 6.7 58 63-124 398-455 (473)
69 KOG4371|consensus 93.3 0.087 1.9E-06 54.7 4.1 84 35-124 1245-1328(1332)
70 smart00049 DEP Domain found in 93.2 0.04 8.6E-07 39.5 1.0 30 211-241 1-30 (77)
71 cd04443 DEP_GPR155 DEP (Dishev 92.8 0.034 7.4E-07 41.2 0.3 20 216-235 16-35 (83)
72 KOG4371|consensus 92.5 0.21 4.5E-06 52.0 5.4 81 34-124 1146-1226(1332)
73 PF00610 DEP: Domain found in 91.9 0.045 9.8E-07 38.9 -0.1 27 214-241 1-27 (74)
74 cd04371 DEP DEP domain, named 90.3 0.17 3.6E-06 36.4 1.6 37 204-241 2-38 (81)
75 cd04445 DEP_PLEK1 DEP (Disheve 90.3 0.1 2.2E-06 39.7 0.5 34 202-235 3-36 (99)
76 cd04441 DEP_2_DEP6 DEP (Dishev 90.0 0.14 3.1E-06 38.1 1.1 33 206-241 10-42 (85)
77 PF12812 PDZ_1: PDZ-like domai 89.7 1.2 2.7E-05 32.4 5.8 45 64-111 31-75 (78)
78 KOG4407|consensus 87.3 0.27 5.9E-06 52.3 1.3 59 62-124 142-200 (1973)
79 cd04446 DEP_DEPDC4 DEP (Dishev 86.1 0.4 8.6E-06 36.5 1.3 29 204-235 4-32 (95)
80 cd04444 DEP_PLEK2 DEP (Disheve 81.6 0.8 1.7E-05 35.7 1.3 34 202-235 3-36 (109)
81 KOG4407|consensus 79.1 1.6 3.4E-05 46.9 2.8 63 37-100 47-132 (1973)
82 KOG0792|consensus 75.7 1.5 3.4E-05 45.9 1.7 66 46-111 715-797 (1144)
83 KOG3834|consensus 72.8 6.6 0.00014 37.6 5.0 59 62-124 14-72 (462)
84 COG0750 Predicted membrane-ass 72.0 14 0.0003 34.0 7.0 54 66-124 132-188 (375)
85 KOG3834|consensus 69.6 22 0.00047 34.1 7.6 72 47-123 92-165 (462)
86 cd04440 DEP_2_P-Rex DEP (Dishe 69.4 1.9 4.1E-05 32.7 0.5 23 216-239 23-45 (93)
87 PF11874 DUF3394: Domain of un 63.0 13 0.00028 31.6 4.4 52 35-92 92-150 (183)
88 KOG1421|consensus 61.4 19 0.00042 36.6 5.9 55 61-122 860-914 (955)
89 cd04447 DEP_BRCC3 DEP (Disheve 61.3 2.3 5E-05 32.1 -0.4 30 203-235 5-34 (92)
90 KOG0143|consensus 50.6 5.7 0.00012 36.6 0.3 43 192-234 192-238 (322)
91 PRK13810 orotate phosphoribosy 49.9 32 0.0007 29.1 4.8 37 79-118 116-152 (187)
92 PLN03001 oxidoreductase, 2OG-F 44.4 6.7 0.00014 35.0 -0.3 40 194-233 134-175 (262)
93 PLN02156 gibberellin 2-beta-di 43.4 7.1 0.00015 36.1 -0.3 40 194-233 198-240 (335)
94 COG3491 PcbC Isopenicillin N s 42.2 6.1 0.00013 36.3 -0.9 37 196-232 194-233 (322)
95 PLN02485 oxidoreductase 40.9 7.9 0.00017 35.5 -0.4 38 194-232 206-248 (329)
96 KOG1945|consensus 39.5 19 0.0004 33.7 1.8 86 35-124 99-188 (377)
97 PTZ00273 oxidase reductase; Pr 38.7 8.8 0.00019 35.0 -0.4 38 195-232 197-237 (320)
98 PLN02365 2-oxoglutarate-depend 37.8 9.7 0.00021 34.5 -0.3 40 194-233 167-211 (300)
99 PLN02750 oxidoreductase, 2OG-F 37.3 11 0.00024 34.9 -0.1 40 194-233 211-254 (345)
100 cd01433 Ribosomal_L16_L10e Rib 36.0 29 0.00062 26.8 2.1 34 74-111 68-101 (112)
101 PLN02904 oxidoreductase 35.8 10 0.00022 35.4 -0.5 40 193-233 225-267 (357)
102 KOG2921|consensus 35.7 66 0.0014 30.8 4.8 48 61-110 218-265 (484)
103 PLN03002 oxidoreductase, 2OG-F 35.2 11 0.00023 34.7 -0.4 40 194-233 201-247 (332)
104 PLN02912 oxidoreductase, 2OG-F 33.6 12 0.00026 34.7 -0.4 40 194-233 215-256 (348)
105 PLN02997 flavonol synthase 33.5 13 0.00029 34.1 -0.1 41 193-233 200-242 (325)
106 KOG1703|consensus 33.2 38 0.00081 32.9 2.9 71 48-125 9-79 (479)
107 PF09162 Tap-RNA_bind: Tap, RN 33.2 23 0.00051 26.5 1.2 12 219-230 4-15 (88)
108 PRK05500 bifunctional orotidin 32.9 72 0.0016 31.1 4.8 38 78-118 386-423 (477)
109 PTZ00173 60S ribosomal protein 32.2 71 0.0015 27.8 4.1 50 75-127 122-172 (213)
110 TIGR01164 rplP_bact ribosomal 32.0 43 0.00093 26.6 2.6 35 72-111 86-120 (126)
111 PLN02276 gibberellin 20-oxidas 32.0 14 0.00029 34.5 -0.3 40 193-232 223-264 (361)
112 PRK09203 rplP 50S ribosomal pr 31.8 42 0.00092 27.1 2.6 37 72-113 87-123 (138)
113 PLN02216 protein SRG1 31.2 14 0.0003 34.4 -0.4 41 193-233 227-270 (357)
114 PLN02704 flavonol synthase 30.4 18 0.00039 33.3 0.2 39 194-232 217-257 (335)
115 PRK13809 orotate phosphoribosy 30.2 94 0.002 26.7 4.6 32 80-111 113-144 (206)
116 TIGR01744 XPRTase xanthine pho 30.0 91 0.002 26.4 4.4 33 82-117 114-146 (191)
117 PRK13812 orotate phosphoribosy 28.7 1.1E+02 0.0023 25.5 4.6 33 79-111 101-133 (176)
118 PRK04199 rpl10e 50S ribosomal 28.6 1.1E+02 0.0023 25.8 4.5 50 72-124 116-166 (172)
119 COG0461 PyrE Orotate phosphori 28.2 1.1E+02 0.0025 26.3 4.7 38 78-118 105-142 (201)
120 PLN02293 adenine phosphoribosy 28.1 1.1E+02 0.0024 25.8 4.6 35 80-117 120-154 (187)
121 PLN02403 aminocyclopropanecarb 27.9 16 0.00034 33.3 -0.6 38 195-232 172-213 (303)
122 PLN02393 leucoanthocyanidin di 27.5 19 0.00041 33.6 -0.2 40 194-233 231-273 (362)
123 TIGR00336 pyrE orotate phospho 27.2 1.2E+02 0.0026 25.0 4.6 32 80-111 103-134 (173)
124 cd01674 Homoaconitase_Swivel H 27.1 1.2E+02 0.0027 24.3 4.4 38 80-124 41-79 (129)
125 PRK09219 xanthine phosphoribos 26.9 1E+02 0.0023 26.0 4.3 34 81-117 113-146 (189)
126 PLN02984 oxidoreductase, 2OG-F 26.1 23 0.00049 32.9 0.1 41 193-233 217-259 (341)
127 CHL00044 rpl16 ribosomal prote 25.8 40 0.00086 27.2 1.4 36 72-112 87-122 (135)
128 PLN02515 naringenin,2-oxogluta 23.5 21 0.00045 33.3 -0.7 40 194-233 213-256 (358)
129 COG0197 RplP Ribosomal protein 22.9 43 0.00094 27.4 1.1 36 73-113 91-126 (146)
130 PLN02758 oxidoreductase, 2OG-F 22.3 27 0.00058 32.6 -0.2 40 194-233 229-272 (361)
131 PLN02947 oxidoreductase 22.2 27 0.00058 32.8 -0.3 40 194-233 243-284 (374)
132 PF11910 NdhO: Cyanobacterial 21.7 26 0.00057 24.7 -0.3 28 211-239 35-66 (67)
133 KOG1712|consensus 21.4 1.3E+02 0.0029 25.2 3.7 36 79-117 116-151 (183)
134 PLN00417 oxidoreductase, 2OG-F 20.8 30 0.00064 32.1 -0.3 40 194-233 221-263 (348)
135 TIGR00201 comF comF family pro 20.5 1.5E+02 0.0033 24.6 4.1 28 84-111 151-178 (190)
136 PF07497 Rho_RNA_bind: Rho ter 20.2 2.1E+02 0.0046 20.8 4.2 38 47-89 12-50 (78)
No 1
>KOG3571|consensus
Probab=100.00 E-value=1.3e-64 Score=468.45 Aligned_cols=216 Identities=75% Similarity=1.189 Sum_probs=199.7
Q ss_pred cccccccCCCCCCC-CCCCCCCCCCCCCCCccceEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCC
Q psy18026 4 RRRPQRRRRHRPPA-LSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRI 82 (246)
Q Consensus 4 ~~~~~~r~~~~~~~-~s~~ss~ss~~~~~~~~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL 82 (246)
+|||+||||+|+|+ .+++||||+++|++|+++|++|.|+++..++|||+|+|+.+..+|+||||.+|++||++++||||
T Consensus 217 ~r~K~rrrkkR~p~~~sr~SSfSSiTdSsmslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRI 296 (626)
T KOG3571|consen 217 RRKKRRRRKKRRPRVPSRASSFSSITDSSMSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRI 296 (626)
T ss_pred HHHHHhhhhhcCCCccccccccccccccccceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCcc
Confidence 56778888999998 99999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEecCCCCCCCCcccCCCCCcccCCCCCcccccccccCCCC
Q psy18026 83 EPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEPVRPIDPGAWVAHTAAIRGDGF 162 (246)
Q Consensus 83 ~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~~~~~~~~~~~~~~~~p~~p~d~~~~~~~~~a~~~~~~ 162 (246)
.+||+|||||.++|++++++|||++||++++++++++|+|++||||+++.+|++||.+|++||||++|+.|+++++|..
T Consensus 297 e~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~DP~~q~~fTipr~epvrPIDp~awv~ht~a~tg~~- 375 (626)
T KOG3571|consen 297 EPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCWDPNPQSYFTIPRGEPVRPIDPAAWVSHTQALTGAP- 375 (626)
T ss_pred CccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeeccCCCCcccccCCCCCcCCcCCHHHHHHHHHHhccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998851
Q ss_pred CCCCCCCcccccCCCCCCcccccchhhhcccCccccCChHHHHHhhCCCCCCccccCceeeeeecccceeeccceEEEee
Q psy18026 163 PLRPPSVSTLTSTSSSLTSSIAETEKAFEELSLTINTDMATIVRVMARPESGLEIRDRMWLKITIPNAFIGKCERIIFIY 242 (246)
Q Consensus 163 ~~~~ps~st~~s~sss~~s~~~~~~~~~~~~~l~v~~~~~~v~~~m~~p~sgl~~~~r~wlki~~~~~~~g~~~~~~~~~ 242 (246)
+ .+++ ..+...+.+++||..|||+|+.|||||||||||||||||||||||+| |+.++|
T Consensus 376 p------------------a~~~---~~e~~~~~~~~d~~~vvraMa~pdSGLeirdRmWlKItIPnafiGsD-lVdWL~ 433 (626)
T KOG3571|consen 376 P------------------AIIE---QNEKIELLTEMDMIIVVRAMARPDSGLEIRDRMWLKITIPNAFIGSD-LVDWLV 433 (626)
T ss_pred c------------------cchh---ccccchhcccccHHHHHHhhcCCCCcceeccceeeeeecchhhcchh-HHHHHH
Confidence 1 1111 15678999999999999999999999999999999999999999965 444433
No 2
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.64 E-value=1.6e-15 Score=111.04 Aligned_cols=81 Identities=32% Similarity=0.589 Sum_probs=73.2
Q ss_pred EEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCc
Q psy18026 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP 117 (246)
Q Consensus 38 ~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~ 117 (246)
+|+|.++...+|||.+.++.+. ...++||..|.++|+|+++| |++||+|++|||+++.++++++++++|+.+ .+.
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~-~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~---~~~ 75 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDN-DEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSA---SNP 75 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTS-SSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHS---TSE
T ss_pred CEEEEeCCCCCcCEEEEecCCC-CcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCC---CCc
Confidence 5788887789999999998762 12699999999999999999 999999999999999999999999999999 778
Q ss_pred EEEEEE
Q psy18026 118 IKLVVA 123 (246)
Q Consensus 118 V~L~V~ 123 (246)
|+|+|.
T Consensus 76 v~L~V~ 81 (81)
T PF00595_consen 76 VTLTVQ 81 (81)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999874
No 3
>KOG3549|consensus
Probab=99.59 E-value=5.6e-15 Score=133.48 Aligned_cols=111 Identities=28% Similarity=0.401 Sum_probs=94.7
Q ss_pred CCCCccceEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHH
Q psy18026 29 DSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108 (246)
Q Consensus 29 ~~~~~~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lL 108 (246)
.+.|.....+|+|.+.+.+|||++|.||.++ .-++.|+.|.+.-+|+..|.|-+||-|++|||+.+++++|+|+|++|
T Consensus 48 G~p~~s~eRtVtirRQ~vGGlGLSIKGGaEH--n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iL 125 (505)
T KOG3549|consen 48 GPPMESKERTVTIRRQKVGGLGLSIKGGAEH--NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNIL 125 (505)
T ss_pred CCCccCCceeEEEEeeecCcceeeecccccc--CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHH
Confidence 4566677889999999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCcEEEEEEecCCCCCCCCcccCCCCCcccCC
Q psy18026 109 REVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEPVRPID 146 (246)
Q Consensus 109 r~~~~~~~~V~L~V~r~~~~~~~~~~~~~~~~p~~p~d 146 (246)
|++ ++.|+|+|..- .....+..+|..++..+-|
T Consensus 126 RNA---GdeVtlTV~~l--r~ApaFLklpL~~~~p~SD 158 (505)
T KOG3549|consen 126 RNA---GDEVTLTVKHL--RAAPAFLKLPLTKDTPDSD 158 (505)
T ss_pred Hhc---CCEEEEEeHhh--hcCcHHhcCccCCCCCCcc
Confidence 999 88899999752 2333466666655443333
No 4
>KOG3550|consensus
Probab=99.58 E-value=4.8e-15 Score=120.18 Aligned_cols=84 Identities=30% Similarity=0.512 Sum_probs=76.8
Q ss_pred ceEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCC
Q psy18026 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114 (246)
Q Consensus 35 ~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~ 114 (246)
...-|+|.|. .+||||.+.||++ .+.+|||++|.|||.|++.|.|+.||+++.|||+++++-.|+.|+++|+.+
T Consensus 90 hprvvelpkt-deglgfnvmggke--qnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa--- 163 (207)
T KOG3550|consen 90 HPRVVELPKT-DEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA--- 163 (207)
T ss_pred CCceeecCcc-ccccceeeccCcc--cCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh---
Confidence 3445777765 5999999999998 489999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEe
Q psy18026 115 PGPIKLVVAK 124 (246)
Q Consensus 115 ~~~V~L~V~r 124 (246)
.+.|.|+|..
T Consensus 164 ~gsvklvvry 173 (207)
T KOG3550|consen 164 VGSVKLVVRY 173 (207)
T ss_pred cCcEEEEEec
Confidence 8999999985
No 5
>KOG3209|consensus
Probab=99.46 E-value=2.3e-13 Score=131.83 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=81.9
Q ss_pred CCCCCCCccceEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHH
Q psy18026 26 SITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105 (246)
Q Consensus 26 s~~~~~~~~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav 105 (246)
.....+|+.++++|+|.++. .||||+|+||.. +..++||-++.+.|||.++||+++||+|++|||.+..+|+|+.|+
T Consensus 889 ~~~r~~qn~~~~~VelErG~-kGFGFSiRGGre--ynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAI 965 (984)
T KOG3209|consen 889 INDRMSQNGDLYTVELERGA-KGFGFSIRGGRE--YNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAI 965 (984)
T ss_pred ccccccccCCeeEEEeeccc-cccceEeecccc--cccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHH
Confidence 44456778899999999886 899999999976 899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCcEEEEEEe
Q psy18026 106 RVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 106 ~lLr~~~~~~~~V~L~V~r 124 (246)
++|++- +..|.|.+.+
T Consensus 966 elIk~g---g~~vll~Lr~ 981 (984)
T KOG3209|consen 966 ELIKQG---GRRVLLLLRR 981 (984)
T ss_pred HHHHhC---CeEEEEEecc
Confidence 999985 3445555554
No 6
>KOG3551|consensus
Probab=99.38 E-value=2.7e-12 Score=117.55 Aligned_cols=84 Identities=31% Similarity=0.363 Sum_probs=77.7
Q ss_pred eEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCC
Q psy18026 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP 115 (246)
Q Consensus 36 i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~ 115 (246)
-..|.+.|...+||||+|.||.+ +..+|.|+.|.+|-+|+..+.|..||.|+.|||.++.+.||+|||+.|+.+ +
T Consensus 85 ~R~V~V~K~d~gGLGISIKGGre--NkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra---G 159 (506)
T KOG3551|consen 85 ERRVRVVKQDAGGLGISIKGGRE--NKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA---G 159 (506)
T ss_pred cceeEEEEecCCcceEEeecCcc--cCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh---C
Confidence 37788888888999999999998 599999999999999999999999999999999999999999999999998 6
Q ss_pred CcEEEEEEe
Q psy18026 116 GPIKLVVAK 124 (246)
Q Consensus 116 ~~V~L~V~r 124 (246)
..|.|.|..
T Consensus 160 keV~levKy 168 (506)
T KOG3551|consen 160 KEVLLEVKY 168 (506)
T ss_pred ceeeeeeee
Confidence 778888764
No 7
>KOG3209|consensus
Probab=99.37 E-value=3.2e-12 Score=124.06 Aligned_cols=121 Identities=26% Similarity=0.398 Sum_probs=92.3
Q ss_pred ceEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCC
Q psy18026 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114 (246)
Q Consensus 35 ~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~ 114 (246)
...+|.|.++. .||||.|.||.+ .+.+|||..|.++|+|+.||||+.||+|+.|+|+++++.+|.+|+.++..++.
T Consensus 649 k~ldV~L~rke-sGFGFRiLGG~e--p~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AAr- 724 (984)
T KOG3209|consen 649 KELDVFLRRKE-SGFGFRILGGDE--PGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAAR- 724 (984)
T ss_pred cceeEEEEeec-cccceEEecCCC--CCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHh-
Confidence 55678888775 889999999987 58999999999999999999999999999999999999999999999988864
Q ss_pred CCcEEEEEEecCCCCCC-CCcccCCCCCcccCCCCCcccccccccCCCCC
Q psy18026 115 PGPIKLVVAKCWDPNPK-GYFTIPRTEPVRPIDPGAWVAHTAAIRGDGFP 163 (246)
Q Consensus 115 ~~~V~L~V~r~~~~~~~-~~~~~~~~~p~~p~d~~~~~~~~~a~~~~~~~ 163 (246)
.+.|.|+|.|...-.+. ...... +. +..+...+-|+..-+|.+|.
T Consensus 725 nghV~LtVRRkv~~~~~~rsp~~s-~~---~~~~yDV~lhR~ENeGFGFV 770 (984)
T KOG3209|consen 725 NGHVNLTVRRKVRTGPARRSPRNS-AA---PSGPYDVVLHRKENEGFGFV 770 (984)
T ss_pred cCceEEEEeeeeeeccccCCcccc-cC---CCCCeeeEEecccCCceeEE
Confidence 78899999983221111 111111 11 22344455666666666554
No 8
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.25 E-value=1.2e-10 Score=84.41 Aligned_cols=80 Identities=36% Similarity=0.600 Sum_probs=69.1
Q ss_pred EEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCC
Q psy18026 37 ITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG 116 (246)
Q Consensus 37 ~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~ 116 (246)
+++.+.+....+|||.+.+..+. ..+++|..|.++++|++.| |++||+|++|||..+.+++++++.++|+.. .+
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~--~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~---~~ 75 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDS--GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNS---GD 75 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccC--CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhC---CC
Confidence 46788877678899999986431 4789999999999999977 999999999999999999999999999987 55
Q ss_pred cEEEEE
Q psy18026 117 PIKLVV 122 (246)
Q Consensus 117 ~V~L~V 122 (246)
.+.|+|
T Consensus 76 ~v~l~v 81 (82)
T cd00992 76 EVTLTV 81 (82)
T ss_pred eEEEEE
Confidence 677765
No 9
>KOG3553|consensus
Probab=99.25 E-value=2.8e-11 Score=91.80 Aligned_cols=96 Identities=29% Similarity=0.454 Sum_probs=77.0
Q ss_pred CCCCCCCCCccceEEEEEEcCC---CC-----cccEEEEcccCC--------CCCCCeEEEEecCCChhhhcCCCCCCCE
Q psy18026 24 FSSITDSSMSLNIITVTLNMDT---VN-----FLGISIVGQSNK--------GGDGGIYVGSIMKGGAVALDGRIEPGDM 87 (246)
Q Consensus 24 ~ss~~~~~~~~~i~~V~L~k~~---~~-----~LG~sI~gg~~~--------~~~~gi~I~~V~~gg~A~~~GrL~~GD~ 87 (246)
++.++...+..-.+.|+|.|.. .+ -+||.|-||-|. -.+.||||+.|.+||||+.+| |+.+|.
T Consensus 4 ~~h~pG~aveclsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDK 82 (124)
T KOG3553|consen 4 MSHIPGQAVECLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDK 82 (124)
T ss_pred cccCCCCceEEEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecce
Confidence 4555555554445567777543 12 389999998876 457899999999999999999 999999
Q ss_pred EEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 88 ILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 88 Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
|++|||-+|.-+||++|+..|+.. ..+.|.|+|
T Consensus 83 IlQvNG~DfTMvTHd~Avk~i~k~----~vl~mLVaR 115 (124)
T KOG3553|consen 83 ILQVNGWDFTMVTHDQAVKRITKE----EVLRMLVAR 115 (124)
T ss_pred EEEecCceeEEEEhHHHHHHhhHh----HHHHHHHHh
Confidence 999999999999999999999863 447777776
No 10
>KOG1892|consensus
Probab=99.24 E-value=4.6e-11 Score=118.97 Aligned_cols=86 Identities=40% Similarity=0.598 Sum_probs=78.0
Q ss_pred cceEEEEEEcCCCCcccEEEEcccCC-CCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhcc
Q psy18026 34 LNIITVTLNMDTVNFLGISIVGQSNK-GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV 112 (246)
Q Consensus 34 ~~i~~V~L~k~~~~~LG~sI~gg~~~-~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~ 112 (246)
.+|.+|+|.|. +|+|++|+..++. ....||||.+|.+||+|+.+|||..||+||.|||.++-|++.+.|.+++-..
T Consensus 932 pei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt- 1008 (1629)
T KOG1892|consen 932 PEIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT- 1008 (1629)
T ss_pred CceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc-
Confidence 57999999875 8899999886655 4578999999999999999999999999999999999999999999999887
Q ss_pred CCCCcEEEEEEe
Q psy18026 113 QKPGPIKLVVAK 124 (246)
Q Consensus 113 ~~~~~V~L~V~r 124 (246)
+..|.|.|++
T Consensus 1009 --g~vV~leVaK 1018 (1629)
T KOG1892|consen 1009 --GNVVHLEVAK 1018 (1629)
T ss_pred --CCeEEEehhh
Confidence 6779999988
No 11
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.16 E-value=7.4e-10 Score=80.39 Aligned_cols=82 Identities=34% Similarity=0.548 Sum_probs=70.8
Q ss_pred eEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCC
Q psy18026 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP 115 (246)
Q Consensus 36 i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~ 115 (246)
.+.+.+.+.. ..|||.+..... ...+++|..|.++++|++.| |++||+|++|||..+.++++.+...+++.. +
T Consensus 2 ~~~~~~~~~~-~~~G~~~~~~~~--~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~---~ 74 (85)
T smart00228 2 PRLVELEKGG-GGLGFSLVGGKD--EGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKA---G 74 (85)
T ss_pred cEEEEEEECC-CcccEEEECCCC--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC---C
Confidence 3567787776 889999987543 12799999999999999999 999999999999999999999999999886 5
Q ss_pred CcEEEEEEe
Q psy18026 116 GPIKLVVAK 124 (246)
Q Consensus 116 ~~V~L~V~r 124 (246)
..+.|++.|
T Consensus 75 ~~~~l~i~r 83 (85)
T smart00228 75 GKVTLTVLR 83 (85)
T ss_pred CeEEEEEEe
Confidence 678998876
No 12
>KOG3580|consensus
Probab=99.11 E-value=2.2e-10 Score=109.88 Aligned_cols=86 Identities=28% Similarity=0.461 Sum_probs=78.5
Q ss_pred cceEEEEEEcCCCCcccEEEEcccCC----CCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHH
Q psy18026 34 LNIITVTLNMDTVNFLGISIVGQSNK----GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 109 (246)
Q Consensus 34 ~~i~~V~L~k~~~~~LG~sI~gg~~~----~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr 109 (246)
++-+||+|.+++..||||.|.||.++ .++..|+|+.|.+|||| .|+|+.||+|+.|||+++++..|.-|++.||
T Consensus 7 WEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQqLr 84 (1027)
T KOG3580|consen 7 WEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQLR 84 (1027)
T ss_pred hhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHHHH
Confidence 57789999999999999999999987 55668999999999998 4899999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEe
Q psy18026 110 EVVQKPGPIKLVVAK 124 (246)
Q Consensus 110 ~~~~~~~~V~L~V~r 124 (246)
.+ +....++|.|
T Consensus 85 ks---gK~A~ItvkR 96 (1027)
T KOG3580|consen 85 KS---GKVAAITVKR 96 (1027)
T ss_pred hh---ccceeEEecc
Confidence 98 6667888876
No 13
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.11 E-value=7.2e-10 Score=78.27 Aligned_cols=68 Identities=32% Similarity=0.561 Sum_probs=59.8
Q ss_pred cccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEE
Q psy18026 48 FLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122 (246)
Q Consensus 48 ~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V 122 (246)
+|||.+.+.. +.+++|..|.++++|+..| |++||+|++|||..+.+++++++.++|+... +..|+|+|
T Consensus 2 ~~G~~~~~~~----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~--g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGT----EGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEV--GEKVTLTV 69 (70)
T ss_pred CccEEEecCC----CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCC--CCeEEEEE
Confidence 5899998852 3589999999999999988 9999999999999999999999999999872 35688876
No 14
>KOG3651|consensus
Probab=99.08 E-value=5.7e-10 Score=99.74 Aligned_cols=83 Identities=30% Similarity=0.405 Sum_probs=77.9
Q ss_pred EEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCC
Q psy18026 37 ITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG 116 (246)
Q Consensus 37 ~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~ 116 (246)
-+|+|+|+..+-+||+|-||.. ..+.+||.+|..+.||+++|+|+.||+|+.|||+++.|.+.-++.++++.+ .+
T Consensus 6 ~~v~ltKD~~nliGISIGGGap--yCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~---~~ 80 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAP--YCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVS---LN 80 (429)
T ss_pred CcEEEeeccccceeEEecCCCC--cCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHh---cc
Confidence 3799999998999999999874 789999999999999999999999999999999999999999999999998 78
Q ss_pred cEEEEEEe
Q psy18026 117 PIKLVVAK 124 (246)
Q Consensus 117 ~V~L~V~r 124 (246)
.|.++..+
T Consensus 81 eV~IhyNK 88 (429)
T KOG3651|consen 81 EVKIHYNK 88 (429)
T ss_pred ceEEEehh
Confidence 89999887
No 15
>KOG3606|consensus
Probab=98.83 E-value=1.1e-08 Score=90.39 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=76.4
Q ss_pred CCCCCCCCccc-eEEEEEEcCC-CCcccEEEEcccCC-------CCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCee
Q psy18026 25 SSITDSSMSLN-IITVTLNMDT-VNFLGISIVGQSNK-------GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDIN 95 (246)
Q Consensus 25 ss~~~~~~~~~-i~~V~L~k~~-~~~LG~sI~gg~~~-------~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~ 95 (246)
|++.|-..-.+ -..|.|.|.+ ..+|||.|+.|..- ....||||+++.+||.|+..|.|-+.|++|+|||+.
T Consensus 147 SsIIDVDivPEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIE 226 (358)
T KOG3606|consen 147 SSIIDVDIVPETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIE 226 (358)
T ss_pred ceeeeecccchhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEE
Confidence 45555222222 3446666554 56799999987543 456899999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 96 FENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 96 ~~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
+.+.|.+++.+|+-.. ...+.++|..
T Consensus 227 VaGKTLDQVTDMMvAN---shNLIiTVkP 252 (358)
T KOG3606|consen 227 VAGKTLDQVTDMMVAN---SHNLIITVKP 252 (358)
T ss_pred eccccHHHHHHHHhhc---ccceEEEecc
Confidence 9999999999999765 5667788765
No 16
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.82 E-value=3e-08 Score=72.55 Aligned_cols=71 Identities=24% Similarity=0.512 Sum_probs=60.6
Q ss_pred CcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 47 NFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 47 ~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
.+||+.+... ..+++|..|.++++|++.| |++||+|++|||..+.+++++++...++... +..+.|++.+.
T Consensus 2 ~~lG~~~~~~-----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~--~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYD-----DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKA--GTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEc-----CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCC--CCEEEEEEEcC
Confidence 5689888652 6789999999999999998 9999999999999999998899999887641 44589998873
No 17
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.82 E-value=3.7e-08 Score=72.23 Aligned_cols=71 Identities=28% Similarity=0.516 Sum_probs=56.8
Q ss_pred cccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 48 FLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 48 ~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
+||+.+....+ ..+++|..|.++|||+++| |++||.|++|||..+.+ ..+....+.... .+..|+|+|.|.
T Consensus 2 ~lGv~~~~~~~---~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~-~g~~v~l~v~R~ 72 (82)
T PF13180_consen 2 GLGVTVQNLSD---TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS--SEDLVNILSKGK-PGDTVTLTVLRD 72 (82)
T ss_dssp E-SEEEEECSC---SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS--HHHHHHHHHCSS-TTSEEEEEEEET
T ss_pred EECeEEEEccC---CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCC-CCCEEEEEEEEC
Confidence 58888887533 5699999999999999999 99999999999999964 677778885432 245599999983
No 18
>KOG3605|consensus
Probab=98.78 E-value=8.1e-09 Score=99.97 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=79.1
Q ss_pred cceEEEEEEcCCCCcccEEEEc-ccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhcc
Q psy18026 34 LNIITVTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV 112 (246)
Q Consensus 34 ~~i~~V~L~k~~~~~LG~sI~g-g~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~ 112 (246)
.++.+|.|.|..++.||+.|+- |++ .--.-++|...+.||||+++|.|..||+|+.|||.++.++++..+...+|+.+
T Consensus 644 E~qKEVvv~K~kGEiLGVViVESGWG-SmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~K 722 (829)
T KOG3605|consen 644 ENQKEVVLEKHKGEILGVVIVESGWG-SILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLK 722 (829)
T ss_pred cccceeeeecccCceeeEEEEecCcc-ccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccc
Confidence 3788999999999999999886 444 23455678999999999999999999999999999999999999999999996
Q ss_pred CCCCcEEEEEEec
Q psy18026 113 QKPGPIKLVVAKC 125 (246)
Q Consensus 113 ~~~~~V~L~V~r~ 125 (246)
+ ...|+|+|++|
T Consensus 723 n-QT~VkltiV~c 734 (829)
T KOG3605|consen 723 N-QTAVKLNIVSC 734 (829)
T ss_pred c-cceEEEEEecC
Confidence 5 56699999986
No 19
>KOG3552|consensus
Probab=98.76 E-value=1.1e-08 Score=102.13 Aligned_cols=89 Identities=27% Similarity=0.499 Sum_probs=75.4
Q ss_pred cceEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccC
Q psy18026 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (246)
Q Consensus 34 ~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~ 113 (246)
++...|++++.. .|||.++. ..++.|..|.+||++ -|.|.+||+|++|||.++++.+.+.+++++|.|
T Consensus 54 ~~pr~vq~~r~~--~lGFgfva------grPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRac-- 121 (1298)
T KOG3552|consen 54 WEPRQVQLQRNA--SLGFGFVA------GRPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRAC-- 121 (1298)
T ss_pred Ccchhhhhhccc--cccceeec------CCceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHH--
Confidence 456777777754 46666665 478999999999996 489999999999999999999999999999999
Q ss_pred CCCcEEEEEEe-cCCCCCCCCcc
Q psy18026 114 KPGPIKLVVAK-CWDPNPKGYFT 135 (246)
Q Consensus 114 ~~~~V~L~V~r-~~~~~~~~~~~ 135 (246)
...|.|+|++ |.-|.+++.|-
T Consensus 122 -e~sv~ltV~qPc~~p~pKStfl 143 (1298)
T KOG3552|consen 122 -ESSVNLTVCQPCVLPGPKSTFL 143 (1298)
T ss_pred -hhhcceEEeccccCCCchhhhh
Confidence 8889999998 88887776553
No 20
>KOG3580|consensus
Probab=98.75 E-value=2.9e-08 Score=95.59 Aligned_cols=101 Identities=29% Similarity=0.396 Sum_probs=83.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCccceEEEEEEc-CCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEE
Q psy18026 13 HRPPALSRTSSFSSITDSSMSLNIITVTLNM-DTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQV 91 (246)
Q Consensus 13 ~~~~~~s~~ss~ss~~~~~~~~~i~~V~L~k-~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~V 91 (246)
.|.......++++..++.......+.|.|.| ..++-||+.+ ...|||..+...|.|+++|+|+.||.||+|
T Consensus 176 prs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrL--------gSqIFvKeit~~gLAardgnlqEGDiiLkI 247 (1027)
T KOG3580|consen 176 PRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRL--------GSQIFVKEITRTGLAARDGNLQEGDIILKI 247 (1027)
T ss_pred CcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccc--------cchhhhhhhcccchhhccCCcccccEEEEE
Confidence 3333444557788887766666666677764 3467799887 456899999999999999999999999999
Q ss_pred CCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 92 NDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 92 Ng~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
||+..+||+..++-.+|... .|.+.|+|.|
T Consensus 248 NGtvteNmSLtDar~LIEkS---~GKL~lvVlR 277 (1027)
T KOG3580|consen 248 NGTVTENMSLTDARKLIEKS---RGKLQLVVLR 277 (1027)
T ss_pred CcEeeccccchhHHHHHHhc---cCceEEEEEe
Confidence 99999999999999999988 8999999998
No 21
>KOG0609|consensus
Probab=98.69 E-value=6.5e-08 Score=92.34 Aligned_cols=86 Identities=30% Similarity=0.435 Sum_probs=77.0
Q ss_pred ceEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCC
Q psy18026 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114 (246)
Q Consensus 35 ~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~ 114 (246)
.+.-|.|.+..+..||.++.-.. ...+||.+|+.||.|++.|.|+.||.|++|||+++.+...+++..+|+.+
T Consensus 122 ~vriv~i~k~~~eplG~Tik~~e----~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~--- 194 (542)
T KOG0609|consen 122 AVRIVRIVKNTGEPLGATIRVEE----DTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNS--- 194 (542)
T ss_pred eeEEEEEeecCCCccceEEEecc----CCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhC---
Confidence 46677888888899999999853 33799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEecCC
Q psy18026 115 PGPIKLVVAKCWD 127 (246)
Q Consensus 115 ~~~V~L~V~r~~~ 127 (246)
.|.++++|...+.
T Consensus 195 ~G~itfkiiP~~~ 207 (542)
T KOG0609|consen 195 RGSITFKIIPSYR 207 (542)
T ss_pred CCcEEEEEccccc
Confidence 7999999987544
No 22
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=98.68 E-value=7e-09 Score=77.19 Aligned_cols=38 Identities=66% Similarity=1.165 Sum_probs=33.2
Q ss_pred HHHHhhCCCCCCccccCceeeeeecccceeeccceEEEe
Q psy18026 203 TIVRVMARPESGLEIRDRMWLKITIPNAFIGKCERIIFI 241 (246)
Q Consensus 203 ~v~~~m~~p~sgl~~~~r~wlki~~~~~~~g~~~~~~~~ 241 (246)
.|++.|.+|++||.||||+|+++++|++|+|+ |++.++
T Consensus 2 ~i~~~m~~~~~Gl~ikdR~~~~~~~p~~F~Gs-dlVdWL 39 (84)
T cd04438 2 GIPRVMRRPDSGLEIKDRMWLKITIPNSFIGS-DLVDWL 39 (84)
T ss_pred chhHhhcCCCCCCceEEEEEeeEECCccccch-HHHHHH
Confidence 58999999999999999999999999999995 444433
No 23
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.54 E-value=2.3e-07 Score=87.64 Aligned_cols=88 Identities=30% Similarity=0.480 Sum_probs=72.4
Q ss_pred CCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCc-EEEEEE
Q psy18026 45 TVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP-IKLVVA 123 (246)
Q Consensus 45 ~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~-V~L~V~ 123 (246)
...|+|+.+.-.. ..++.|.++.+|+||+++| |++||.|+.|||.++.+++.++|+..||.. .|+ |+|++.
T Consensus 98 ~~~GiG~~i~~~~----~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~---~Gt~V~L~i~ 169 (406)
T COG0793 98 EFGGIGIELQMED----IGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGK---PGTKVTLTIL 169 (406)
T ss_pred cccceeEEEEEec----CCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCC---CCCeEEEEEE
Confidence 4688999988741 2899999999999999999 999999999999999999999999999988 555 999999
Q ss_pred ecCCCCCCCCcccCCCCC
Q psy18026 124 KCWDPNPKGYFTIPRTEP 141 (246)
Q Consensus 124 r~~~~~~~~~~~~~~~~p 141 (246)
|. .......+++.|.+.
T Consensus 170 r~-~~~k~~~v~l~Re~i 186 (406)
T COG0793 170 RA-GGGKPFTVTLTREEI 186 (406)
T ss_pred Ec-CCCceeEEEEEEEEE
Confidence 95 212234455656543
No 24
>KOG3542|consensus
Probab=98.49 E-value=2.1e-07 Score=90.91 Aligned_cols=82 Identities=35% Similarity=0.505 Sum_probs=71.3
Q ss_pred eEEEEEEc-CCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCC
Q psy18026 36 IITVTLNM-DTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114 (246)
Q Consensus 36 i~~V~L~k-~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~ 114 (246)
-..|.|++ .....|-|.+.||.+. ..||||..|.+|+.|++.| |+.||+|++|||.++++++...|+++|++.
T Consensus 536 ~RqviLtk~sre~pl~f~L~GGsEk--GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn--- 609 (1283)
T KOG3542|consen 536 PRQVILTKASREDPLMFRLVGGSEK--GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN--- 609 (1283)
T ss_pred ceeEEEecccccCCceeEeccCccc--cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC---
Confidence 45678886 3356799999999874 7899999999999999999 999999999999999999999999999974
Q ss_pred CCcEEEEEEe
Q psy18026 115 PGPIKLVVAK 124 (246)
Q Consensus 115 ~~~V~L~V~r 124 (246)
..++|+|..
T Consensus 610 -thLtltvKt 618 (1283)
T KOG3542|consen 610 -THLTLTVKT 618 (1283)
T ss_pred -ceEEEEEec
Confidence 457887764
No 25
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.36 E-value=1.1e-06 Score=87.45 Aligned_cols=88 Identities=17% Similarity=0.282 Sum_probs=65.7
Q ss_pred CCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECC-----eecccCCHHHHHHHHHhccCCCCcEEE
Q psy18026 46 VNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND-----INFENMSNDEAVRVLREVVQKPGPIKL 120 (246)
Q Consensus 46 ~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg-----~~~~~~s~~eav~lLr~~~~~~~~V~L 120 (246)
..|+|+.+... +++++|..|.+||||++++.|++||+|++||+ +++.+++.++++.+|++.. +..|+|
T Consensus 243 ~~GIGa~l~~~-----~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~--Gt~V~L 315 (667)
T PRK11186 243 LEGIGAVLQMD-----DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPK--GSKVRL 315 (667)
T ss_pred eeEEEEEEEEe-----CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCC--CCEEEE
Confidence 46788887652 56799999999999999855999999999994 4677899999999999872 344999
Q ss_pred EEEecCCCCCCCCcccCCCC
Q psy18026 121 VVAKCWDPNPKGYFTIPRTE 140 (246)
Q Consensus 121 ~V~r~~~~~~~~~~~~~~~~ 140 (246)
+|.+.........+++.|..
T Consensus 316 tV~r~~~~~~~~~vtl~R~~ 335 (667)
T PRK11186 316 EILPAGKGTKTRIVTLTRDK 335 (667)
T ss_pred EEEeCCCCCceEEEEEEeee
Confidence 99873211222334555543
No 26
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.33 E-value=3.7e-06 Score=60.67 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=49.8
Q ss_pred cccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 48 FLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 48 ~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
.+|+.+... +.++.|..|.++++|+..| |++||.|++|||..+.+ ..+ +++... .+..+.|++.|
T Consensus 2 ~~G~~~~~~-----~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~---~l~~~~-~~~~v~l~v~r 66 (80)
T cd00990 2 YLGLTLDKE-----EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQD---RLKEYQ-AGDPVELTVFR 66 (80)
T ss_pred cccEEEEcc-----CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHH---HHHhcC-CCCEEEEEEEE
Confidence 367777542 5679999999999999999 99999999999999886 333 344321 14468888887
No 27
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.30 E-value=3.8e-06 Score=78.96 Aligned_cols=78 Identities=27% Similarity=0.396 Sum_probs=61.7
Q ss_pred CCCcccEEEEcccCC-CCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEE
Q psy18026 45 TVNFLGISIVGQSNK-GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 123 (246)
Q Consensus 45 ~~~~LG~sI~gg~~~-~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~ 123 (246)
...|+|+.+.-..+. ....+++|..|.+||||+++| |++||+|++|||..+.+++..++..+|+... +..|.|+|.
T Consensus 83 ~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~--g~~v~ltv~ 159 (389)
T PLN00049 83 AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPE--GSSVELTLR 159 (389)
T ss_pred CceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC--CCEEEEEEE
Confidence 356788887643220 012379999999999999999 9999999999999999999999999997651 445999998
Q ss_pred ec
Q psy18026 124 KC 125 (246)
Q Consensus 124 r~ 125 (246)
|.
T Consensus 160 r~ 161 (389)
T PLN00049 160 RG 161 (389)
T ss_pred EC
Confidence 73
No 28
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.28 E-value=6.4e-06 Score=59.13 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=49.1
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
...+.|..|.++++|+..| |++||.|++|||..+.+ .+++...|.... +..+.|++.|
T Consensus 11 ~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~--~~~~~l~v~r 68 (79)
T cd00989 11 PIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENP--GKPLTLTVER 68 (79)
T ss_pred ccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCC--CceEEEEEEE
Confidence 5568999999999999999 99999999999999985 578888887651 3458888876
No 29
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.26 E-value=7.7e-06 Score=59.54 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=49.7
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
..|++|..|.++++|+..| |++||.|++|||..+.+ .++....|.... .+..+.|++.|
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~~-~g~~v~l~v~r 67 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPTK-PGEVITVTVLP 67 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcCC-CCCEEEEEEEE
Confidence 6789999999999999999 99999999999999985 577888887641 13458898887
No 30
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.21 E-value=5.4e-06 Score=76.21 Aligned_cols=72 Identities=29% Similarity=0.469 Sum_probs=60.8
Q ss_pred CCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 46 VNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 46 ~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..++|+.+.-. +.+++|..|.++|+|+++| |++||+|++|||..+.+++..++..+++... +..+.|+|.|.
T Consensus 50 ~~~lG~~~~~~-----~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~--g~~v~l~v~R~ 121 (334)
T TIGR00225 50 LEGIGIQVGMD-----DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKK--GTKVSLEILRA 121 (334)
T ss_pred eEEEEEEEEEE-----CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCC--CCEEEEEEEeC
Confidence 45688888652 5689999999999999999 9999999999999999988888888887641 45599999874
No 31
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.05 E-value=3.4e-05 Score=56.55 Aligned_cols=59 Identities=31% Similarity=0.483 Sum_probs=48.3
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
..+++|..|.++++|++.| |++||.|++|||..+.+ ..+..+++.... .+..+.|.+.|
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~~~-~~~~i~l~v~r 81 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAELK-PGDKVTLTVLR 81 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHhcC-CCCEEEEEEEE
Confidence 5689999999999999998 99999999999999986 456667776542 13458888876
No 32
>KOG3605|consensus
Probab=97.97 E-value=6.8e-06 Score=80.14 Aligned_cols=74 Identities=22% Similarity=0.400 Sum_probs=61.7
Q ss_pred ceEEEEEEcCC-CCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccC
Q psy18026 35 NIITVTLNMDT-VNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (246)
Q Consensus 35 ~i~~V~L~k~~-~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~ 113 (246)
-+.+|.|.+-. ..-|||++..| +|-+++.||-|+|.| +++|.+|++|||.++....|+..|++|..+
T Consensus 736 PV~~V~I~RPd~kyQLGFSVQNG---------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~a-- 803 (829)
T KOG3605|consen 736 PVTTVLIRRPDLRYQLGFSVQNG---------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNA-- 803 (829)
T ss_pred CceEEEeecccchhhccceeeCc---------EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHh--
Confidence 45677776432 34599999876 788999999999988 999999999999999999999999999988
Q ss_pred CCCcEEEE
Q psy18026 114 KPGPIKLV 121 (246)
Q Consensus 114 ~~~~V~L~ 121 (246)
-|.|.|+
T Consensus 804 -VGEIhMK 810 (829)
T KOG3605|consen 804 -VGEIHMK 810 (829)
T ss_pred -hhhhhhh
Confidence 4555543
No 33
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.97 E-value=5.2e-05 Score=54.81 Aligned_cols=58 Identities=26% Similarity=0.452 Sum_probs=47.1
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
..|++|..|.++++|+. | |++||.|++|||..+.+ .++...+|.... .+..+.|++.|
T Consensus 7 ~~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~-~~~~v~l~v~r 64 (79)
T cd00986 7 YHGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKK-EGDTVKLKVKR 64 (79)
T ss_pred ecCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCC-CCCEEEEEEEE
Confidence 45789999999999986 7 99999999999999985 677888887531 13458999887
No 34
>KOG1738|consensus
Probab=97.82 E-value=9.3e-05 Score=72.20 Aligned_cols=94 Identities=27% Similarity=0.326 Sum_probs=75.9
Q ss_pred CCCCCCCCccc--eEEEEEE-cCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCH
Q psy18026 25 SSITDSSMSLN--IITVTLN-MDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSN 101 (246)
Q Consensus 25 ss~~~~~~~~~--i~~V~L~-k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~ 101 (246)
...+|+.|+.. +..|.|. ..+..+||+.|.. ..++.++|+.+.++++|+....|+.||++++||+..+.++.+
T Consensus 188 ~~c~DPl~sQ~a~Le~vqls~~kp~eglg~~I~S----sydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwql 263 (638)
T KOG1738|consen 188 VDCPDPLMSQKASLERVQLSTLSPSEGLGLYIDS----SYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQL 263 (638)
T ss_pred ccCCchHhhhHHHHHHHHhccCCcccCCceEEee----ecCCceeccccccCChHHHhhcccCccceeeecccccccchh
Confidence 44555555542 2233343 2456889999988 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCcEEEEEEec
Q psy18026 102 DEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 102 ~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
+-.|.-|+.. ..-|.|+|.+.
T Consensus 264 k~vV~sL~~~---~sgi~l~lkKr 284 (638)
T KOG1738|consen 264 KVVVSSLRET---PAGIELTLKKR 284 (638)
T ss_pred HhHHhhcccC---cccceeeeecc
Confidence 9999999987 55688888763
No 35
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.75 E-value=0.00012 Score=69.39 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=49.5
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..|++|..|.+||+|+++| |++||+|++|||..+.+ ..+....+.... .+..+.|+|.|.
T Consensus 256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~--~~~~~~~l~~~~-~g~~v~l~v~R~ 315 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISS--FADLRRAIGTLK-PGKKVTLGILRK 315 (428)
T ss_pred CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 4789999999999999999 99999999999999985 566666666531 145699999883
No 36
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.69 E-value=0.00022 Score=63.69 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=56.2
Q ss_pred cccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 48 FLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 48 ~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
.+|+...-..+ ...|+.|..+.++++|++.| |+.||+|++|||..+.+ .+++.+++.+... +..++|+|.|.
T Consensus 178 ~lgi~p~~~~g--~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~--~~~~~~~l~~~~~-~~~v~l~V~R~ 249 (259)
T TIGR01713 178 YIRLSPVMKND--KLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRD--PEQAFQALQMLRE-ETNLTLTVERD 249 (259)
T ss_pred eEeEEEEEeCC--ceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCC-CCeEEEEEEEC
Confidence 45666543221 24799999999999999999 99999999999999996 5677777776521 34699999984
No 37
>KOG3938|consensus
Probab=97.69 E-value=7.5e-05 Score=66.20 Aligned_cols=83 Identities=22% Similarity=0.305 Sum_probs=69.3
Q ss_pred ceEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCC
Q psy18026 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114 (246)
Q Consensus 35 ~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~ 114 (246)
+..+|.+.|.. ..||++|.. ++-+..||..|.+||.-++--.+++||.|-.|||.++.++-|-|+.++|++...
T Consensus 126 q~kEv~v~Kse-dalGlTITD----NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~r- 199 (334)
T KOG3938|consen 126 QAKEVEVVKSE-DALGLTITD----NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPR- 199 (334)
T ss_pred cceeEEEEecc-cccceEEee----CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhccc-
Confidence 44566776664 679999986 357888999999999999988899999999999999999999999999999842
Q ss_pred CCcEEEEEE
Q psy18026 115 PGPIKLVVA 123 (246)
Q Consensus 115 ~~~V~L~V~ 123 (246)
+...+|.+.
T Consensus 200 ge~ftlrLi 208 (334)
T KOG3938|consen 200 GETFTLRLI 208 (334)
T ss_pred CCeeEEEee
Confidence 444677665
No 38
>PRK10942 serine endoprotease; Provisional
Probab=97.62 E-value=0.00029 Score=67.98 Aligned_cols=58 Identities=26% Similarity=0.436 Sum_probs=51.7
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..+++|..|.++++|++.| |++||.|++|||..+.+ .++..++++.. +..+.|+|.|.
T Consensus 407 ~~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~---~~~v~l~V~R~ 464 (473)
T PRK10942 407 DKGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSK---PSVLALNIQRG 464 (473)
T ss_pred CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhC---CCeEEEEEEEC
Confidence 3589999999999999999 99999999999999996 68888999875 56799999884
No 39
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.58 E-value=0.00027 Score=67.06 Aligned_cols=59 Identities=29% Similarity=0.518 Sum_probs=51.2
Q ss_pred CCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 63 ~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
.|++|..|.++++|++.| |++||.|++|||..+.+ .++..++++.... +..+.|+|.|.
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~-g~~v~l~v~R~ 420 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAKK-GGRVALLILRG 420 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCC-CCEEEEEEEEC
Confidence 689999999999999999 99999999999999985 6788888886521 45699999883
No 40
>PRK10139 serine endoprotease; Provisional
Probab=97.52 E-value=0.00043 Score=66.47 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=49.8
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..|++|..|.++++|+++| |++||.|++|||..+.+ .++..+.+.... .+..+.|+|.|.
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~~-~g~~v~l~V~R~ 348 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTE-PGTKVKLGLLRN 348 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 4689999999999999999 99999999999999986 577777776531 145689998873
No 41
>PRK10139 serine endoprotease; Provisional
Probab=97.47 E-value=0.00042 Score=66.58 Aligned_cols=57 Identities=28% Similarity=0.444 Sum_probs=50.6
Q ss_pred CCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 63 ~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
.|++|..|.++++|++.| |++||.|++|||..+.+ .++..+++++. +..+.|+|.|.
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~---~~~v~l~v~R~ 446 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAK---PAIIALQIVRG 446 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhC---CCeEEEEEEEC
Confidence 589999999999999999 99999999999999975 68888888875 56789999873
No 42
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.46 E-value=0.0008 Score=54.61 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=56.9
Q ss_pred ceEEEEEEc----CCCCcccEEEEcccCC-CCCCCeEEEEecCCChhhhcCCCCC-CCEEEEECCeecccCCHHHHHHHH
Q psy18026 35 NIITVTLNM----DTVNFLGISIVGQSNK-GGDGGIYVGSIMKGGAVALDGRIEP-GDMILQVNDINFENMSNDEAVRVL 108 (246)
Q Consensus 35 ~i~~V~L~k----~~~~~LG~sI~gg~~~-~~~~gi~I~~V~~gg~A~~~GrL~~-GD~Il~VNg~~~~~~s~~eav~lL 108 (246)
..+.|.+.- +..+.||+++.-.... ....++-|..|.+||||+.+| |.+ .|.|+.+++..+.+ .++..+++
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~--~~~l~~~v 86 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD--EDDLFELV 86 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCHHHHHH
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC--HHHHHHHH
Confidence 445555542 2246699998875543 456788899999999999999 887 69999999988885 56777777
Q ss_pred HhccCCCCcEEEEEEe
Q psy18026 109 REVVQKPGPIKLVVAK 124 (246)
Q Consensus 109 r~~~~~~~~V~L~V~r 124 (246)
... ....+.|.|-.
T Consensus 87 ~~~--~~~~l~L~Vyn 100 (138)
T PF04495_consen 87 EAN--ENKPLQLYVYN 100 (138)
T ss_dssp HHT--TTS-EEEEEEE
T ss_pred HHc--CCCcEEEEEEE
Confidence 765 24569999975
No 43
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.39 E-value=0.00063 Score=63.13 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=49.8
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..|++|..|.++++|++.| |++||.|++|||..+.+ .++..+.+.... .++.+.|+|.|.
T Consensus 277 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~~~-~g~~v~l~v~R~ 336 (351)
T TIGR02038 277 LRGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAETR-PGSKVMVTVLRQ 336 (351)
T ss_pred cccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 3689999999999999999 99999999999999986 567777776531 155699999883
No 44
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.34 E-value=0.00072 Score=64.25 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=50.4
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..+..|..|.++++|+.+| |++||+|++|||..+.+ .++..+.++.. .+..+.|+|.|.
T Consensus 202 ~~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s--~~dl~~~l~~~--~~~~v~l~v~R~ 260 (420)
T TIGR00054 202 KIEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS--WTDFVSAVKEN--PGKSMDIKVERN 260 (420)
T ss_pred CcCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhC--CCCceEEEEEEC
Confidence 3578999999999999999 99999999999999985 67888888775 144589999883
No 45
>PRK10898 serine endoprotease; Provisional
Probab=97.33 E-value=0.00098 Score=61.97 Aligned_cols=60 Identities=27% Similarity=0.319 Sum_probs=48.6
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..|++|..|.++++|++.| |+.||.|++|||..+.+ .++..+.+.... .+..+.|+|.|.
T Consensus 278 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~~~-~g~~v~l~v~R~ 337 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAEIR-PGSVIPVVVMRD 337 (353)
T ss_pred CCeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 4799999999999999999 99999999999999975 455566665431 145599999883
No 46
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=97.31 E-value=8.9e-05 Score=54.92 Aligned_cols=33 Identities=39% Similarity=0.564 Sum_probs=30.3
Q ss_pred HHHHHhhCCCCCCccccCceeeeeecccceeecc
Q psy18026 202 ATIVRVMARPESGLEIRDRMWLKITIPNAFIGKC 235 (246)
Q Consensus 202 ~~v~~~m~~p~sgl~~~~r~wlki~~~~~~~g~~ 235 (246)
..|++.|..|++ +.|+||.|.+.+.|++|+|++
T Consensus 2 ~~i~~~m~~~~~-~~i~~r~~~~~~~~~cF~G~e 34 (83)
T cd04449 2 AEIAEAMRDPSG-IGIFDRSWHKGLPSNCFIGSE 34 (83)
T ss_pred HHHHHHHhCCCC-CceeechhcCccCCcceEhHH
Confidence 579999999998 799999999999999999954
No 47
>PRK10942 serine endoprotease; Provisional
Probab=97.29 E-value=0.0011 Score=64.04 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=49.6
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..|++|..|.++++|+++| |+.||.|++|||..+.+ .++....+.... .+..+.|+|.|.
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~~-~g~~v~l~v~R~ 369 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISS--FAALRAQVGTMP-VGSKLTLGLLRD 369 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 4689999999999999999 99999999999999986 566767776542 144589999873
No 48
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.25 E-value=0.0011 Score=63.51 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=49.5
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..+..|..|.+||+|+++| |++||+|++|||..+.+ .++..+.++.. .+..+.|+|.|.
T Consensus 220 ~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s--~~dl~~~l~~~--~~~~v~l~v~R~ 278 (449)
T PRK10779 220 QIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQ--WQTFVTLVRDN--PGKPLALEIERQ 278 (449)
T ss_pred CcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhC--CCCEEEEEEEEC
Confidence 3457999999999999999 99999999999999974 67788888764 145689999884
No 49
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=97.02 E-value=0.00028 Score=52.10 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=31.4
Q ss_pred HHHhhCCCCCCccccCceeeeeecccceeeccceEEEe
Q psy18026 204 IVRVMARPESGLEIRDRMWLKITIPNAFIGKCERIIFI 241 (246)
Q Consensus 204 v~~~m~~p~sgl~~~~r~wlki~~~~~~~g~~~~~~~~ 241 (246)
+...|..|++|+.||||.|-..+.|++|+|+ |++.++
T Consensus 2 l~~~m~~~~~gv~i~drr~~~~~y~~cF~Gs-elVdWL 38 (81)
T cd04448 2 LWEKICRSSTGIEFQDHRYRLRTYTNCILGK-ELVNWL 38 (81)
T ss_pred HHHHhhCcCCCCeeEEEEECCEEcCcccChH-HHHHHH
Confidence 5678999999999999999999999999995 444443
No 50
>KOG0606|consensus
Probab=96.99 E-value=0.0027 Score=65.80 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=61.2
Q ss_pred EEEEcCCCCcccEEEEcccCCCCCC-----CeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccC
Q psy18026 39 VTLNMDTVNFLGISIVGQSNKGGDG-----GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (246)
Q Consensus 39 V~L~k~~~~~LG~sI~gg~~~~~~~-----gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~ 113 (246)
+.+.+. ...|||++..-.-.-++. ...|..|.+|++|...| ++.||.|..|||..+.++.|.|++++|-..
T Consensus 630 I~i~~~-~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~-- 705 (1205)
T KOG0606|consen 630 ITIHFS-GKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKS-- 705 (1205)
T ss_pred eeeecc-ccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhc--
Confidence 556555 477998766532211233 35688999999999888 999999999999999999999999999876
Q ss_pred CCCcEEEEEE
Q psy18026 114 KPGPIKLVVA 123 (246)
Q Consensus 114 ~~~~V~L~V~ 123 (246)
+..|.+.+.
T Consensus 706 -gn~v~~~tt 714 (1205)
T KOG0606|consen 706 -GNKVTLRTT 714 (1205)
T ss_pred -CCeeEEEee
Confidence 455666543
No 51
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=96.98 E-value=0.0013 Score=63.04 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=45.6
Q ss_pred CeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 64 gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..+|..|.++|||+++| |++||.|++|||..+.+. ++....+..... +..++++|.|.
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~-g~~v~v~v~R~ 184 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALVSKIG-DESTTITVAPF 184 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhcc-CCceEEEEEeC
Confidence 34799999999999999 999999999999999974 555555443321 34599999984
No 52
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.77 E-value=0.0075 Score=57.01 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=51.0
Q ss_pred CCcccEEEEcccCCCCCCCeEEEEec--------CCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCc
Q psy18026 46 VNFLGISIVGQSNKGGDGGIYVGSIM--------KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP 117 (246)
Q Consensus 46 ~~~LG~sI~gg~~~~~~~gi~I~~V~--------~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~ 117 (246)
+..+|+.+. ..|++|.... .+++|+.+| |++||.|++|||..+.+ .+++.++++... +..
T Consensus 95 G~~iGI~l~-------t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~--g~~ 162 (402)
T TIGR02860 95 GQSIGVKLN-------TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAG--GEK 162 (402)
T ss_pred CEEEEEEEe-------cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCC--CCe
Confidence 345666664 4566664432 358998888 99999999999999985 688889998872 455
Q ss_pred EEEEEEec
Q psy18026 118 IKLVVAKC 125 (246)
Q Consensus 118 V~L~V~r~ 125 (246)
+.|+|.|.
T Consensus 163 V~LtV~R~ 170 (402)
T TIGR02860 163 LTLTIERG 170 (402)
T ss_pred EEEEEEEC
Confidence 89998873
No 53
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=96.73 E-value=0.00075 Score=50.44 Aligned_cols=32 Identities=34% Similarity=0.499 Sum_probs=29.5
Q ss_pred HHHhhCCCCCCccccCceeeeeecccceeecc
Q psy18026 204 IVRVMARPESGLEIRDRMWLKITIPNAFIGKC 235 (246)
Q Consensus 204 v~~~m~~p~sgl~~~~r~wlki~~~~~~~g~~ 235 (246)
.+..|..|+.|+.+++|+|.+.++|++|.|++
T Consensus 2 ~~~~~~~~~~Gv~~~~~r~~~~~~~~~F~G~~ 33 (88)
T cd04450 2 SVGQMQDSEVGVRMRTEKSFLTTVPYAFTGKA 33 (88)
T ss_pred hHHHhcCCCCCeeeeeeEEeeeEcCceeEhHH
Confidence 46789999999999999999999999999965
No 54
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.67 E-value=0.0093 Score=44.72 Aligned_cols=68 Identities=25% Similarity=0.434 Sum_probs=42.1
Q ss_pred cccEEEEcccCCCCCCCeEEEEecCC--------ChhhhcC-CCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcE
Q psy18026 48 FLGISIVGQSNKGGDGGIYVGSIMKG--------GAVALDG-RIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPI 118 (246)
Q Consensus 48 ~LG~sI~gg~~~~~~~gi~I~~V~~g--------g~A~~~G-rL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V 118 (246)
.||.-+.-. +++.-|..|.+| ||-+.-| .++.||.|++|||+.+.. ......+|.+.. +..|
T Consensus 2 ~LGAd~~~~-----~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~--~~~~~~lL~~~a--gk~V 72 (88)
T PF14685_consen 2 LLGADFSYD-----NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTA--DANPYRLLEGKA--GKQV 72 (88)
T ss_dssp B-SEEEEEE-----TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BT--TB-HHHHHHTTT--TSEE
T ss_pred ccceEEEEc-----CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCC--CCCHHHHhcccC--CCEE
Confidence 356555542 566778889887 5555555 567999999999999985 345677787762 3459
Q ss_pred EEEEEe
Q psy18026 119 KLVVAK 124 (246)
Q Consensus 119 ~L~V~r 124 (246)
.|+|.+
T Consensus 73 ~Ltv~~ 78 (88)
T PF14685_consen 73 LLTVNR 78 (88)
T ss_dssp EEEEE-
T ss_pred EEEEec
Confidence 999987
No 55
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.67 E-value=0.0045 Score=58.86 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=49.2
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..+.+|..|.++|||+++| |++||.|++|||..+.+ .++..+.+... .+.+.+++.+.
T Consensus 127 ~~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~--~~dl~~~ia~~---~~~v~~~I~r~ 184 (420)
T TIGR00054 127 EVGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPG--FKDVRQQIADI---AGEPMVEILAE 184 (420)
T ss_pred CCCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhh---cccceEEEEEe
Confidence 4677899999999999999 99999999999999986 56777777666 46788888773
No 56
>KOG3129|consensus
Probab=96.55 E-value=0.0074 Score=52.00 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=44.7
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCC-HHHHHHHHHhccCCCCcEEEEEEecC
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS-NDEAVRVLREVVQKPGPIKLVVAKCW 126 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s-~~eav~lLr~~~~~~~~V~L~V~r~~ 126 (246)
..-++|.+|.++|||+.+| |+.||.|+++..+.-.+.. ........+.. ....+.++|.|..
T Consensus 138 ~~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~--e~~~v~v~v~R~g 200 (231)
T KOG3129|consen 138 RPFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSN--EDQIVSVTVIREG 200 (231)
T ss_pred cceEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhc--cCcceeEEEecCC
Confidence 4467899999999999999 9999999998776665543 44444444444 1334788887743
No 57
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.36 E-value=0.0038 Score=60.31 Aligned_cols=54 Identities=24% Similarity=0.486 Sum_probs=42.8
Q ss_pred ceEEEEEEcCCC--CcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCe
Q psy18026 35 NIITVTLNMDTV--NFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94 (246)
Q Consensus 35 ~i~~V~L~k~~~--~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~ 94 (246)
+-+.+++...+- ..||+.+... .+...|..|.+||||.++| |.+||.|+.|||.
T Consensus 437 ~~~gL~~~~~~~~~~~LGl~v~~~-----~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 437 ERFGLTFTPKPREAYYLGLKVKSE-----GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred hhcceEEEecCCCCcccceEeccc-----CCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 334455553332 3688888763 6788999999999999999 9999999999999
No 58
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.13 E-value=0.01 Score=56.63 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=39.2
Q ss_pred EEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEE
Q psy18026 67 VGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 123 (246)
Q Consensus 67 I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~ 123 (246)
|..|.+|++|+..| |++||+|++|||..+.++ .+....+. ...+.|+|.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw--~D~~~~l~-----~e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDL--IDYQFLCA-----DEELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHhc-----CCcEEEEEE
Confidence 56789999999999 999999999999999864 45544442 345888776
No 59
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=95.94 E-value=0.0028 Score=50.56 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=29.2
Q ss_pred HHHHhhCCCCCCccccCceeeeeecccceeeccceEE
Q psy18026 203 TIVRVMARPESGLEIRDRMWLKITIPNAFIGKCERII 239 (246)
Q Consensus 203 ~v~~~m~~p~sgl~~~~r~wlki~~~~~~~g~~~~~~ 239 (246)
.+++.+-.-++|..||||.|...+.|++|+|+ |++.
T Consensus 3 ~~l~~~~~~~~~~~ikdR~~~~~~y~~cF~Gs-ElVd 38 (125)
T cd04437 3 RALRNAILSDAPHLIRDRKYHLRTYRQCCVGT-ELVD 38 (125)
T ss_pred HHHHHHHHccCcccceeeeECCEECCcccccH-HHHH
Confidence 35666667777999999999999999999995 4443
No 60
>KOG3532|consensus
Probab=95.74 E-value=0.032 Score=55.54 Aligned_cols=79 Identities=16% Similarity=0.383 Sum_probs=63.5
Q ss_pred eEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCC
Q psy18026 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP 115 (246)
Q Consensus 36 i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~ 115 (246)
+..+.+.......+|+.... .+...+-|-.|.++++|+++. +.+||.|++|||+.+. +..++.+.++.. .
T Consensus 375 ilD~f~~~~~s~~ig~vf~~----~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~---~ 444 (1051)
T KOG3532|consen 375 VLDTFSRYDVSSPIGLVFDK----NTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQST---T 444 (1051)
T ss_pred hhhhhccccccCceeEEEec----CCceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhc---c
Confidence 33344555556677877665 247888999999999999988 9999999999999998 478999999988 7
Q ss_pred CcEEEEEEe
Q psy18026 116 GPIKLVVAK 124 (246)
Q Consensus 116 ~~V~L~V~r 124 (246)
+.|...+.+
T Consensus 445 ~~~~~l~~~ 453 (1051)
T KOG3532|consen 445 GDLTVLVER 453 (1051)
T ss_pred cceEEEEee
Confidence 877766665
No 61
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.73 E-value=0.052 Score=48.93 Aligned_cols=44 Identities=20% Similarity=0.460 Sum_probs=34.4
Q ss_pred hcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 78 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 78 ~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..| |++||.+++|||.++.+ -+++.+++++..+ ...++|+|.|.
T Consensus 222 ~~G-Lq~GDva~sING~dL~D--~~qa~~l~~~L~~-~tei~ltVeRd 265 (276)
T PRK09681 222 ASG-FKEGDIAIALNQQDFTD--PRAMIALMRQLPS-MDSIQLTVLRK 265 (276)
T ss_pred HcC-CCCCCEEEEeCCeeCCC--HHHHHHHHHHhcc-CCeEEEEEEEC
Confidence 456 99999999999999997 4566666665532 46699999984
No 62
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=95.12 E-value=0.067 Score=48.96 Aligned_cols=64 Identities=20% Similarity=0.389 Sum_probs=52.1
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEecCCCCC
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 130 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~~~~~~ 130 (246)
-.|+|+..+..++++ .|.|+.||.|+.|||..+.+ .+|..+.+++..- +..|++...|...+..
T Consensus 129 y~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~-Gd~VtI~~~r~~~~~~ 192 (342)
T COG3480 129 YAGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKP-GDEVTIDYERHNETPE 192 (342)
T ss_pred EeeEEEEEccCCcch--hceeccCCeEEeeCCeecCC--HHHHHHHHhccCC-CCeEEEEEEeccCCCc
Confidence 468999999999997 47899999999999999985 7899999987632 4559999997544443
No 63
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.06 Score=49.59 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=48.1
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
..|++|..|.++|+|++.| ++.||.|+++||..+.+ ..+....+.... .+..+.+.+.|.
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v~~~~-~g~~v~~~~~r~ 328 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAVASNR-PGDEVALKLLRG 328 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHHhccC-CCCEEEEEEEEC
Confidence 5569999999999999999 99999999999999987 455555554442 134599999884
No 64
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=94.70 E-value=0.013 Score=43.17 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=22.4
Q ss_pred hhCCCCCCccccCceeeeeecccceeecc
Q psy18026 207 VMARPESGLEIRDRMWLKITIPNAFIGKC 235 (246)
Q Consensus 207 ~m~~p~sgl~~~~r~wlki~~~~~~~g~~ 235 (246)
.|...++. .||||.|...++|++|+|++
T Consensus 6 ~~~~~~~~-~ikdr~~~~~~~~~cF~Gse 33 (81)
T cd04439 6 KMMCKQGS-LIKDRRRKLSTFPKCFLGNE 33 (81)
T ss_pred HHhccCCC-ceEeeEECcEEcCceeEhHH
Confidence 34445544 69999999999999999954
No 65
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=94.42 E-value=0.2 Score=44.23 Aligned_cols=64 Identities=16% Similarity=0.361 Sum_probs=47.5
Q ss_pred CCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEE
Q psy18026 44 DTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 123 (246)
Q Consensus 44 ~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~ 123 (246)
+...-+|+.+..+++ ++.-...| |+.||+.+.+|+.++++ -+++.++|+...+ ...+.|+|.
T Consensus 202 r~eki~Gyr~~pgkd--------------~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~-m~s~qlTv~ 263 (275)
T COG3031 202 RNEKIEGYRFEPGKD--------------GSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRN-MPSLQLTVI 263 (275)
T ss_pred eCCceEEEEecCCCC--------------cchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhc-CcceEEEEE
Confidence 334567777777643 34555677 99999999999999986 6777777777643 466999999
Q ss_pred ec
Q psy18026 124 KC 125 (246)
Q Consensus 124 r~ 125 (246)
|.
T Consensus 264 R~ 265 (275)
T COG3031 264 RR 265 (275)
T ss_pred ec
Confidence 84
No 66
>KOG1421|consensus
Probab=94.27 E-value=0.12 Score=51.74 Aligned_cols=58 Identities=24% Similarity=0.474 Sum_probs=47.6
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
.+-+.|..|.++|+|++ .|++||+++.||+..+.+ ..++.++|-+.+ +..+.|+|.|.
T Consensus 302 tgmLvV~~vL~~gpa~k--~Le~GDillavN~t~l~d--f~~l~~iLDegv--gk~l~LtI~Rg 359 (955)
T KOG1421|consen 302 TGMLVVETVLPEGPAEK--KLEPGDILLAVNSTCLND--FEALEQILDEGV--GKNLELTIQRG 359 (955)
T ss_pred ceeEEEEEeccCCchhh--ccCCCcEEEEEcceehHH--HHHHHHHHhhcc--CceEEEEEEeC
Confidence 45577899999999987 599999999999988876 577788887663 55699999883
No 67
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=93.85 E-value=0.028 Score=41.62 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=20.1
Q ss_pred CccccCceeeeeecccceeecc
Q psy18026 214 GLEIRDRMWLKITIPNAFIGKC 235 (246)
Q Consensus 214 gl~~~~r~wlki~~~~~~~g~~ 235 (246)
+-.||||+|...+.|++|+|++
T Consensus 12 ~~~IkdR~~~~r~y~~cF~Gse 33 (82)
T cd04442 12 AKVIKDRRHHLRTYPNCFVGKE 33 (82)
T ss_pred CCeeeeeEECCEEcCceeEcHH
Confidence 5689999999999999999964
No 68
>KOG1320|consensus
Probab=93.35 E-value=0.23 Score=48.00 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=47.0
Q ss_pred CCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 63 GGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 63 ~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
++++|..|.+|+++...+ +..||+|+.|||+.+.| ..+..++++.+.- .+.|.+...+
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n--~~~l~~~i~~~~~-~~~v~vl~~~ 455 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKN--LKHLYELIEECST-EDKVAVLDRR 455 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeec--hHHHHHHHHhcCc-CceEEEEEec
Confidence 478999999999998877 99999999999999998 5778888888831 2345555554
No 69
>KOG4371|consensus
Probab=93.34 E-value=0.087 Score=54.66 Aligned_cols=84 Identities=21% Similarity=0.469 Sum_probs=72.1
Q ss_pred ceEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCC
Q psy18026 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114 (246)
Q Consensus 35 ~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~ 114 (246)
-++.|.|.+.+..++|+.+.... ..+++||..+...++|...|.++.||+++..+|.++.+.+-.+..+-++-.
T Consensus 1245 ~l~~~~~~~~p~~~~~~~~~~~~---~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v--- 1318 (1332)
T KOG4371|consen 1245 PLISVMLLKKPMATLGLSLAKRT---MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLV--- 1318 (1332)
T ss_pred hhhhheeeecccccccccccccC---cCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhc---
Confidence 34566677777888999988764 489999999999999999999999999999999999999988888888755
Q ss_pred CCcEEEEEEe
Q psy18026 115 PGPIKLVVAK 124 (246)
Q Consensus 115 ~~~V~L~V~r 124 (246)
.+++.+++.+
T Consensus 1319 ~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1319 QGPVQITVTR 1328 (1332)
T ss_pred cCchhheehh
Confidence 7888888876
No 70
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=93.18 E-value=0.04 Score=39.52 Aligned_cols=30 Identities=43% Similarity=0.842 Sum_probs=24.8
Q ss_pred CCCCccccCceeeeeecccceeeccceEEEe
Q psy18026 211 PESGLEIRDRMWLKITIPNAFIGKCERIIFI 241 (246)
Q Consensus 211 p~sgl~~~~r~wlki~~~~~~~g~~~~~~~~ 241 (246)
|..||.++||.|...+.|++|.|. |++.++
T Consensus 1 ~~~gl~~~~~~~~~~~~~~~F~G~-e~v~wL 30 (77)
T smart00049 1 PETGLKLRDRKYFLKTYPNCFTGS-ELVDWL 30 (77)
T ss_pred CCCCcccEEEEECCEECcceeEcH-HHHHHH
Confidence 568999999999999999999995 444444
No 71
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=92.82 E-value=0.034 Score=41.20 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=18.3
Q ss_pred cccCceeeeeecccceeecc
Q psy18026 216 EIRDRMWLKITIPNAFIGKC 235 (246)
Q Consensus 216 ~~~~r~wlki~~~~~~~g~~ 235 (246)
=||||.|...+.|++|+|++
T Consensus 16 ~ikdR~~~~~~y~~cF~Gse 35 (83)
T cd04443 16 IVKDRRCGLRTYKGVFCGCD 35 (83)
T ss_pred hhccceecceeccccccHHH
Confidence 58999999999999999954
No 72
>KOG4371|consensus
Probab=92.51 E-value=0.21 Score=52.03 Aligned_cols=81 Identities=27% Similarity=0.404 Sum_probs=61.9
Q ss_pred cceEEEEEEcCCCCcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccC
Q psy18026 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (246)
Q Consensus 34 ~~i~~V~L~k~~~~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~ 113 (246)
.+.+.|.+.+.+ +.||..+..- .+-+-|+...-.++-.+-. |++||.|+-|||+.+++.-|.+|+.+++..
T Consensus 1146 p~~i~~~~~r~~-~~l~~~~a~~-----~~~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~-- 1216 (1332)
T KOG4371|consen 1146 PRVIDVELDRNE-GSLGVQIASL-----SGRVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGG-- 1216 (1332)
T ss_pred CccccccCCCCC-CCCCceeccC-----ccceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhcc--
Confidence 467777887765 6799988764 3344455544444433434 899999999999999999999999999987
Q ss_pred CCCcEEEEEEe
Q psy18026 114 KPGPIKLVVAK 124 (246)
Q Consensus 114 ~~~~V~L~V~r 124 (246)
+..|.|-|.|
T Consensus 1217 -~~~~~~~~~r 1226 (1332)
T KOG4371|consen 1217 -GDRVVLGVQR 1226 (1332)
T ss_pred -CceEEEEeec
Confidence 6679999987
No 73
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=91.92 E-value=0.045 Score=38.91 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=22.7
Q ss_pred CccccCceeeeeecccceeeccceEEEe
Q psy18026 214 GLEIRDRMWLKITIPNAFIGKCERIIFI 241 (246)
Q Consensus 214 gl~~~~r~wlki~~~~~~~g~~~~~~~~ 241 (246)
||.+|||+|...++|++|.|+ |++.++
T Consensus 1 Gv~i~~~~~~~~~~~~~F~G~-e~v~WL 27 (74)
T PF00610_consen 1 GVPIKDRRKRLKTYPNCFTGS-EAVDWL 27 (74)
T ss_dssp SSCSEEEECSSEEECCEEEHH-HHHHHH
T ss_pred CCccEEEEECCEEcCCEeEhH-HHHHHH
Confidence 899999999999999999995 444443
No 74
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=90.32 E-value=0.17 Score=36.37 Aligned_cols=37 Identities=38% Similarity=0.690 Sum_probs=30.2
Q ss_pred HHHhhCCCCCCccccCceeeeeecccceeeccceEEEe
Q psy18026 204 IVRVMARPESGLEIRDRMWLKITIPNAFIGKCERIIFI 241 (246)
Q Consensus 204 v~~~m~~p~sgl~~~~r~wlki~~~~~~~g~~~~~~~~ 241 (246)
.+..|..+.+|+.+++|+|...+.+++|.|+ |++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~G~-e~v~WL 38 (81)
T cd04371 2 LVRIMLDSDSGVPIKDRKYHLKTYPNCFTGS-ELVDWL 38 (81)
T ss_pred HHHHhhccCCCCccEEEEECCEECCceeEcH-HHHHHH
Confidence 3566788899999999999999999999995 444443
No 75
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=90.31 E-value=0.1 Score=39.69 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=31.9
Q ss_pred HHHHHhhCCCCCCccccCceeeeeecccceeecc
Q psy18026 202 ATIVRVMARPESGLEIRDRMWLKITIPNAFIGKC 235 (246)
Q Consensus 202 ~~v~~~m~~p~sgl~~~~r~wlki~~~~~~~g~~ 235 (246)
..|+..|..|+.|..-++.+=++=+||++|.|+|
T Consensus 3 ~~lv~sMqDp~~GIk~~~~~~~~tv~~hcftGsd 36 (99)
T cd04445 3 SALYLSMKDPEKGIKELNLEKDKKVFNHCFTGSC 36 (99)
T ss_pred HHHHHHHhCcccchhhhhHHHhhccccceecccH
Confidence 5689999999999999999999999999999975
No 76
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=89.99 E-value=0.14 Score=38.06 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=22.2
Q ss_pred HhhCCCCCCccccCceeeeeecccceeeccceEEEe
Q psy18026 206 RVMARPESGLEIRDRMWLKITIPNAFIGKCERIIFI 241 (246)
Q Consensus 206 ~~m~~p~sgl~~~~r~wlki~~~~~~~g~~~~~~~~ 241 (246)
..|+.++|++. ||..-..+.|++|+|+ |++.++
T Consensus 10 ~~~~~~~~~ik--~R~~~~~~y~~cF~Gs-ElVdWL 42 (85)
T cd04441 10 KLMSTENSILQ--VREEEGVKYERTFVGS-EFIDWL 42 (85)
T ss_pred HHHcCCCCcee--eeEeCCEEcCCEeEch-HHHHHH
Confidence 35677777655 5555558899999995 444443
No 77
>PF12812 PDZ_1: PDZ-like domain
Probab=89.66 E-value=1.2 Score=32.39 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=37.0
Q ss_pred CeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhc
Q psy18026 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (246)
Q Consensus 64 gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~ 111 (246)
+.++.....|+++...| +..|-.|..|||..+.+ .++.++++++.
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~i 75 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPD--LDDFIKVVKKI 75 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcC--HHHHHHHHHhC
Confidence 35555667888876655 99999999999999996 78999999877
No 78
>KOG4407|consensus
Probab=87.31 E-value=0.27 Score=52.29 Aligned_cols=59 Identities=19% Similarity=0.402 Sum_probs=52.6
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
..-+||..|++.|+|+... |+.||.++.||.....++.+.+++.++++. ...++|.|..
T Consensus 142 ~eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt---~~~~~~~~~P 200 (1973)
T KOG4407|consen 142 METIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQT---PAVLTLHVVP 200 (1973)
T ss_pred hhhhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccC---CCCCCceecc
Confidence 3448999999999999877 999999999999999999999999999987 6667887765
No 79
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=86.07 E-value=0.4 Score=36.47 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHhhCCCCCCccccCceeeeeecccceeecc
Q psy18026 204 IVRVMARPESGLEIRDRMWLKITIPNAFIGKC 235 (246)
Q Consensus 204 v~~~m~~p~sgl~~~~r~wlki~~~~~~~g~~ 235 (246)
|++.+.. |++||||.|.==+-|+.|+|++
T Consensus 4 ii~~~r~---~v~ikdRr~~lk~y~~CF~GsE 32 (95)
T cd04446 4 IIDALQT---QVEVKKRRHNLKSYHDCFLGSE 32 (95)
T ss_pred HHHHHHh---cCcccceeeeceecccccchHH
Confidence 4444443 9999999998888999999963
No 80
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=81.56 E-value=0.8 Score=35.69 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=30.9
Q ss_pred HHHHHhhCCCCCCccccCceeeeeecccceeecc
Q psy18026 202 ATIVRVMARPESGLEIRDRMWLKITIPNAFIGKC 235 (246)
Q Consensus 202 ~~v~~~m~~p~sgl~~~~r~wlki~~~~~~~g~~ 235 (246)
..|+..|..|..|+...||.|-.=+-+++|+|++
T Consensus 3 ~~L~~~mq~~~~Gik~~~~r~~~k~y~~CF~Gse 36 (109)
T cd04444 3 HRIVDKMHDSSTGIRHSPNMEQGSTYKKTFLGSA 36 (109)
T ss_pred HHHHHHHhCCCcCcchhhhhhccccccccccchH
Confidence 5689999999999999999998889999999963
No 81
>KOG4407|consensus
Probab=79.06 E-value=1.6 Score=46.93 Aligned_cols=63 Identities=6% Similarity=-0.020 Sum_probs=47.9
Q ss_pred EEEEEEcCCCCcccEEEEcc--------------------cCC---CCCCCeEEEEecCCChhhhcCCCCCCCEEEEECC
Q psy18026 37 ITVTLNMDTVNFLGISIVGQ--------------------SNK---GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93 (246)
Q Consensus 37 ~~V~L~k~~~~~LG~sI~gg--------------------~~~---~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg 93 (246)
..+.+.+.+++||||+++-. +.. .....+|+.++..++++..+| +..||.|+.|||
T Consensus 47 ~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG 125 (1973)
T KOG4407|consen 47 KLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGITG 125 (1973)
T ss_pred ceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeecc
Confidence 34555567789999997542 111 223347888999999999999 999999999999
Q ss_pred eecccCC
Q psy18026 94 INFENMS 100 (246)
Q Consensus 94 ~~~~~~s 100 (246)
....+.+
T Consensus 126 ~e~~~~T 132 (1973)
T KOG4407|consen 126 LEPTSPT 132 (1973)
T ss_pred cccCCCc
Confidence 9888766
No 82
>KOG0792|consensus
Probab=75.65 E-value=1.5 Score=45.92 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=55.0
Q ss_pred CCcccEEEEcccCC---CCCCCeEEEEec-------------CCChhhhcC-CCCCCCEEEEECCeecccCCHHHHHHHH
Q psy18026 46 VNFLGISIVGQSNK---GGDGGIYVGSIM-------------KGGAVALDG-RIEPGDMILQVNDINFENMSNDEAVRVL 108 (246)
Q Consensus 46 ~~~LG~sI~gg~~~---~~~~gi~I~~V~-------------~gg~A~~~G-rL~~GD~Il~VNg~~~~~~s~~eav~lL 108 (246)
.+.+||.+.|+.+. ....+..++++. ++..|+... ++..||+++.+||.+.....|+.+|.++
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 56799999998774 222677788888 888886653 7788999999999999999999999999
Q ss_pred Hhc
Q psy18026 109 REV 111 (246)
Q Consensus 109 r~~ 111 (246)
+..
T Consensus 795 rs~ 797 (1144)
T KOG0792|consen 795 RSP 797 (1144)
T ss_pred hhh
Confidence 886
No 83
>KOG3834|consensus
Probab=72.78 E-value=6.6 Score=37.55 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=46.1
Q ss_pred CCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 62 ~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
..|.-|.+|.++++|+++|..---|.|+.|||..+.. ..+....+|+.. ...|+|+|.-
T Consensus 14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~---sekVkltv~n 72 (462)
T KOG3834|consen 14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKAN---SEKVKLTVYN 72 (462)
T ss_pred ceeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhc---ccceEEEEEe
Confidence 5677788899999999999444579999999999975 466677777766 3348888764
No 84
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=71.98 E-value=14 Score=33.98 Aligned_cols=54 Identities=28% Similarity=0.472 Sum_probs=40.0
Q ss_pred EEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCc---EEEEEEe
Q psy18026 66 YVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP---IKLVVAK 124 (246)
Q Consensus 66 ~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~---V~L~V~r 124 (246)
++..+..+++|+..| +++||.++++|+..+.. .++..+.+.... +.. +.+.+.+
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~--~~~~~~~~~~~~--~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVAS--WDDVRRLLVAAA--GDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccC--HHHHHHHHHhcc--CCcccceEEEEEe
Confidence 344789999999999 99999999999999986 456655555541 222 4566665
No 85
>KOG3834|consensus
Probab=69.62 E-value=22 Score=34.15 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=46.4
Q ss_pred CcccEEEEcccCC-CCCCCeEEEEecCCChhhhcCCCCCCCEEEEE-CCeecccCCHHHHHHHHHhccCCCCcEEEEEE
Q psy18026 47 NFLGISIVGQSNK-GGDGGIYVGSIMKGGAVALDGRIEPGDMILQV-NDINFENMSNDEAVRVLREVVQKPGPIKLVVA 123 (246)
Q Consensus 47 ~~LG~sI~gg~~~-~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~V-Ng~~~~~~s~~eav~lLr~~~~~~~~V~L~V~ 123 (246)
..||++|+=.... ..+.-.-|-+|.+.++|+++|...-+|.|+-+ +.+.- ..++...+|..- .+..+.|.|.
T Consensus 92 qllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~---~~eDl~~lIesh--e~kpLklyVY 165 (462)
T KOG3834|consen 92 QLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMH---EEEDLFTLIESH--EGKPLKLYVY 165 (462)
T ss_pred cccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhcc---chHHHHHHHHhc--cCCCcceeEe
Confidence 3588887654331 23445568899999999999954478999876 44332 345666666543 2444777653
No 86
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=69.41 E-value=1.9 Score=32.67 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=19.4
Q ss_pred cccCceeeeeecccceeeccceEE
Q psy18026 216 EIRDRMWLKITIPNAFIGKCERII 239 (246)
Q Consensus 216 ~~~~r~wlki~~~~~~~g~~~~~~ 239 (246)
=||||.|---+-|++|+|+ ||+.
T Consensus 23 likdR~~~l~~y~~cFvGs-ElVd 45 (93)
T cd04440 23 VVKDRDYHLKTYKSVVPAS-KLVD 45 (93)
T ss_pred ceeeceeccEEcccccchh-HHHH
Confidence 5899999999999999995 4443
No 87
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=62.97 E-value=13 Score=31.61 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=38.7
Q ss_pred ceEEEEEEcCCC-------CcccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEEC
Q psy18026 35 NIITVTLNMDTV-------NFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92 (246)
Q Consensus 35 ~i~~V~L~k~~~-------~~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VN 92 (246)
..++|.|..+.. ...|+.+... ++.+.|..|..||+|++.| +..|++|.+|-
T Consensus 92 ~~k~v~lpl~~~~~g~eRL~~~GL~l~~e-----~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 92 VTKTVLLPLGDGADGEERLEAAGLTLMEE-----GGKVIVDEVEFGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred eEEEEEEEcCCCCCHHHHHHhCCCEEEee-----CCEEEEEecCCCCHHHHcC-CCCCcEEEEEE
Confidence 345666663321 1258887763 6779999999999999999 99999888763
No 88
>KOG1421|consensus
Probab=61.36 E-value=19 Score=36.63 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=45.9
Q ss_pred CCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEE
Q psy18026 61 GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122 (246)
Q Consensus 61 ~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V 122 (246)
...|+|+...-.|+||.. + |+.-..|..|||++..+ .++.+.++++. ++.-...|
T Consensus 860 lp~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~~--lddf~~~~~~i---pdnsyv~v 914 (955)
T KOG1421|consen 860 LPEGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTNT--LDDFYHMLLEI---PDNSYVQV 914 (955)
T ss_pred cCCceEEeecccCChhHh-h-cchheeEEEecccccCc--HHHHHHHHhhC---CCCceEEE
Confidence 357899999999999987 5 99999999999999875 79999999988 55533333
No 89
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=61.27 E-value=2.3 Score=32.11 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=24.9
Q ss_pred HHHHhhCCCCCCccccCceeeeeecccceeecc
Q psy18026 203 TIVRVMARPESGLEIRDRMWLKITIPNAFIGKC 235 (246)
Q Consensus 203 ~v~~~m~~p~sgl~~~~r~wlki~~~~~~~g~~ 235 (246)
.|++.|. +|++||+|-|-==+-|++|+|++
T Consensus 5 ~ii~~~r---~g~~vk~rR~~lr~y~~CF~gsE 34 (92)
T cd04447 5 EVTELFR---AGMPLRKHRQHFKSYENCFTASE 34 (92)
T ss_pred HHHHHHH---ccCChHHHHHhcccCccccchHH
Confidence 5777777 89999999886667899999974
No 90
>KOG0143|consensus
Probab=50.56 E-value=5.7 Score=36.56 Aligned_cols=43 Identities=28% Similarity=0.557 Sum_probs=34.5
Q ss_pred ccCccccCChHHHHHhhCC-CCCCcccc--Cceeeee-ecccceeec
Q psy18026 192 ELSLTINTDMATIVRVMAR-PESGLEIR--DRMWLKI-TIPNAFIGK 234 (246)
Q Consensus 192 ~~~l~v~~~~~~v~~~m~~-p~sgl~~~--~r~wlki-~~~~~~~g~ 234 (246)
..-+.-|||+..+.=.+.. --.||+|+ |-.|..| +||.|||.-
T Consensus 192 ~lGl~~HtD~~~lTiLlqd~~V~GLQv~~~dg~Wi~V~P~p~a~vVN 238 (322)
T KOG0143|consen 192 TLGLGAHTDKSFLTILLQDDDVGGLQVFTKDGKWIDVPPIPGAFVVN 238 (322)
T ss_pred cccccCccCcCceEEEEccCCcCceEEEecCCeEEECCCCCCCEEEE
Confidence 4567789999887766666 67999999 5899998 589999864
No 91
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=49.90 E-value=32 Score=29.07 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=33.0
Q ss_pred cCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcE
Q psy18026 79 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPI 118 (246)
Q Consensus 79 ~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V 118 (246)
.|.+..||+++-|+++-.+|-|..+++++++++ +..|
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~---Ga~V 152 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREA---GAYI 152 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHC---CCEE
Confidence 466889999999999999999999999999998 5553
No 92
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=44.40 E-value=6.7 Score=34.98 Aligned_cols=40 Identities=25% Similarity=0.535 Sum_probs=28.2
Q ss_pred CccccCChHHHHHhhCCCCCCccc-cCceeeee-ecccceee
Q psy18026 194 SLTINTDMATIVRVMARPESGLEI-RDRMWLKI-TIPNAFIG 233 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~p~sgl~~-~~r~wlki-~~~~~~~g 233 (246)
.+.-|+|...|.=..+..-.||+| ++-.|+.| ++|++||-
T Consensus 134 g~~~HtD~g~lTlL~qd~v~GLqV~~~g~Wi~V~p~p~a~vV 175 (262)
T PLN03001 134 GLQSHSDFGAITLLIQDDVEGLQLLKDAEWLMVPPISDAILI 175 (262)
T ss_pred CCcCCcCCCeeEEEEeCCCCceEEeeCCeEEECCCCCCcEEE
Confidence 345678776554344445689999 56689999 68999874
No 93
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=43.36 E-value=7.1 Score=36.13 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=28.3
Q ss_pred CccccCChHHHHHhhCCCCCCcccc--Cceeeee-ecccceee
Q psy18026 194 SLTINTDMATIVRVMARPESGLEIR--DRMWLKI-TIPNAFIG 233 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~p~sgl~~~--~r~wlki-~~~~~~~g 233 (246)
.+.-|+|...+.=..+..-.||+|+ +..|+.+ ++|.+||-
T Consensus 198 g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~Wi~Vpp~pga~VV 240 (335)
T PLN02156 198 GFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPDHSSFFV 240 (335)
T ss_pred CCCCccCCCceEEEEeCCCCceEEEeCCCCEEEccCCCCcEEE
Confidence 4556888766543344466899995 6699999 47888864
No 94
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=42.19 E-value=6.1 Score=36.33 Aligned_cols=37 Identities=27% Similarity=0.571 Sum_probs=28.7
Q ss_pred cccCChHHHHHhhCCCCCCccccCc--eeeeee-ccccee
Q psy18026 196 TINTDMATIVRVMARPESGLEIRDR--MWLKIT-IPNAFI 232 (246)
Q Consensus 196 ~v~~~~~~v~~~m~~p~sgl~~~~r--~wlki~-~~~~~~ 232 (246)
--|+|-..|.=..+.--.||+|+++ .||+|. +|.+|+
T Consensus 194 GaHtD~G~lTLl~Qd~~~GLqv~~~~g~Wl~v~P~pgtlv 233 (322)
T COG3491 194 GAHTDYGLLTLLFQDDVGGLEVRPPNGGWLDVPPIPGTLV 233 (322)
T ss_pred ccccCCCeEEEEEecccCCeEEecCCCCeeECCCCCCeEE
Confidence 3567777777677777899999999 899995 666664
No 95
>PLN02485 oxidoreductase
Probab=40.86 E-value=7.9 Score=35.48 Aligned_cols=38 Identities=21% Similarity=0.547 Sum_probs=26.2
Q ss_pred CccccCChHHHHHhhCC-CC-CCcccc--Cceeeee-eccccee
Q psy18026 194 SLTINTDMATIVRVMAR-PE-SGLEIR--DRMWLKI-TIPNAFI 232 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~-p~-sgl~~~--~r~wlki-~~~~~~~ 232 (246)
.+.-|||...|. .+.+ .+ .||+|+ +..|+.| ++|.+||
T Consensus 206 g~~~HTD~g~lT-lL~qd~~~~GLqV~~~~g~Wi~V~p~pg~~v 248 (329)
T PLN02485 206 GCGAHTDYGLLT-LVNQDDDITALQVRNLSGEWIWAIPIPGTFV 248 (329)
T ss_pred ccccccCCCeEE-EEeccCCCCeeeEEcCCCcEEECCCCCCcEE
Confidence 455688886543 3444 33 899996 5689999 4677877
No 96
>KOG1945|consensus
Probab=39.46 E-value=19 Score=33.74 Aligned_cols=86 Identities=23% Similarity=0.341 Sum_probs=65.5
Q ss_pred ceEEEEEEcCCCCcccEEEEcc---cCC-CCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHh
Q psy18026 35 NIITVTLNMDTVNFLGISIVGQ---SNK-GGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110 (246)
Q Consensus 35 ~i~~V~L~k~~~~~LG~sI~gg---~~~-~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~ 110 (246)
+.+.+.+.+. ..++|+++.|- ++- -...++|+.+..+|+..+++|+..+-|++..+.+.++..++...+++.++.
T Consensus 99 ~~~e~av~~~-~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~ 177 (377)
T KOG1945|consen 99 DLFEVAVEKG-AEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGG 177 (377)
T ss_pred chhhhhccCC-cCCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhccccc
Confidence 4455555544 47788877761 111 345789999999999999999999999999999999999999999999987
Q ss_pred ccCCCCcEEEEEEe
Q psy18026 111 VVQKPGPIKLVVAK 124 (246)
Q Consensus 111 ~~~~~~~V~L~V~r 124 (246)
+ ...+.++..+
T Consensus 178 S---~~~~n~~s~~ 188 (377)
T KOG1945|consen 178 S---SSRVNFTSPT 188 (377)
T ss_pred c---hhccCCcccc
Confidence 7 4445555444
No 97
>PTZ00273 oxidase reductase; Provisional
Probab=38.75 E-value=8.8 Score=34.98 Aligned_cols=38 Identities=21% Similarity=0.503 Sum_probs=25.9
Q ss_pred ccccCChHHHHHhhCCCCCCccccCc--eeeeee-ccccee
Q psy18026 195 LTINTDMATIVRVMARPESGLEIRDR--MWLKIT-IPNAFI 232 (246)
Q Consensus 195 l~v~~~~~~v~~~m~~p~sgl~~~~r--~wlki~-~~~~~~ 232 (246)
+.-|||...+.=..+....||+|+++ .|+.|+ +|.+||
T Consensus 197 ~~~HTD~g~lTlL~qd~~~GLqV~~~~g~Wi~V~p~pg~lv 237 (320)
T PTZ00273 197 CGEHTDYGIITLLYQDSVGGLQVRNLSGEWMDVPPLEGSFV 237 (320)
T ss_pred cccccCCCeEEEEecCCCCceEEECCCCCEEeCCCCCCeEE
Confidence 34577776554334445679999754 799995 677776
No 98
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=37.82 E-value=9.7 Score=34.50 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=27.3
Q ss_pred CccccCChHHHHHhhCCC-CCCccccCc---eeeee-ecccceee
Q psy18026 194 SLTINTDMATIVRVMARP-ESGLEIRDR---MWLKI-TIPNAFIG 233 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~p-~sgl~~~~r---~wlki-~~~~~~~g 233 (246)
.+.-|+|...|.=..+.. -.||+|+++ .|+.| ++|++||-
T Consensus 167 g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g~Wi~V~p~pga~vV 211 (300)
T PLN02365 167 GVQIHTDSGFLTILQDDENVGGLEVMDPSSGEFVPVDPLPGTLLV 211 (300)
T ss_pred cccCccCCCceEEEecCCCcCceEEEECCCCeEEecCCCCCeEEE
Confidence 344678887644333333 589999754 89999 48888874
No 99
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=37.33 E-value=11 Score=34.89 Aligned_cols=40 Identities=28% Similarity=0.514 Sum_probs=28.9
Q ss_pred CccccCChHHHHHhhCCCCCCcccc---Cceeeeee-cccceee
Q psy18026 194 SLTINTDMATIVRVMARPESGLEIR---DRMWLKIT-IPNAFIG 233 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~p~sgl~~~---~r~wlki~-~~~~~~g 233 (246)
.+.-|+|...+.=..+....||+|+ +-.|+.++ +|++||-
T Consensus 211 g~~~HtD~g~lTlL~qd~v~GLQV~~~~~g~Wi~V~p~pg~~vV 254 (345)
T PLN02750 211 GVGRHKDGGALTVLAQDDVGGLQISRRSDGEWIPVKPIPDAFII 254 (345)
T ss_pred CcCCCCCCCeEEEEecCCCCceEEeecCCCeEEEccCCCCeEEE
Confidence 4556888876654444567899994 56899994 7888874
No 100
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=35.95 E-value=29 Score=26.77 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=25.5
Q ss_pred ChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhc
Q psy18026 74 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (246)
Q Consensus 74 g~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~ 111 (246)
.+.....++.+|+.|+++.+++. .+.+.+.|+.+
T Consensus 68 ~~~~~~a~v~~G~iifEi~~~~~----~~~~~~alk~a 101 (112)
T cd01433 68 KPEGWVARVKPGQILFEVRGVPE----EEVAKEALRRA 101 (112)
T ss_pred CccEEEEEECCCCEEEEEeCcCc----HHHHHHHHHHh
Confidence 33344446888999999998876 67788888877
No 101
>PLN02904 oxidoreductase
Probab=35.80 E-value=10 Score=35.38 Aligned_cols=40 Identities=25% Similarity=0.495 Sum_probs=28.3
Q ss_pred cCccccCChHHHHHhhCCCCCCccccCc--eeeeee-cccceee
Q psy18026 193 LSLTINTDMATIVRVMARPESGLEIRDR--MWLKIT-IPNAFIG 233 (246)
Q Consensus 193 ~~l~v~~~~~~v~~~m~~p~sgl~~~~r--~wlki~-~~~~~~g 233 (246)
..+.-|+|...|.=. .+...||+|+++ .|+.++ +|.+||-
T Consensus 225 ~g~~~HtD~g~lTlL-~qd~~GLQV~~~~g~Wi~V~p~pgalVV 267 (357)
T PLN02904 225 LGMPPHSDFGSLTIL-LQSSQGLQIMDCNKNWVCVPYIEGALIV 267 (357)
T ss_pred cCCcCccCCCceEEE-ecCCCeeeEEeCCCCEEECCCCCCeEEE
Confidence 345568888765433 345689999765 899994 7888864
No 102
>KOG2921|consensus
Probab=35.73 E-value=66 Score=30.82 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHh
Q psy18026 61 GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110 (246)
Q Consensus 61 ~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~ 110 (246)
...++.|..|...+|+.---.|.+||+|.++||..+.+ -++=.+.++.
T Consensus 218 ~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~t 265 (484)
T KOG2921|consen 218 HGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLAT 265 (484)
T ss_pred cCceEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHh
Confidence 36778888888888875544499999999999999985 4555555554
No 103
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=35.25 E-value=11 Score=34.75 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=27.2
Q ss_pred CccccCChHHHHHhhCCCCCCccccCc------eeeee-ecccceee
Q psy18026 194 SLTINTDMATIVRVMARPESGLEIRDR------MWLKI-TIPNAFIG 233 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~p~sgl~~~~r------~wlki-~~~~~~~g 233 (246)
.+.-|+|...+.=..+..-.||+|+.+ .|+.| ++|++||-
T Consensus 201 g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VV 247 (332)
T PLN03002 201 ACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIV 247 (332)
T ss_pred ccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEECCCCCCeEEE
Confidence 345688886543333333589999764 69999 68899873
No 104
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=33.64 E-value=12 Score=34.69 Aligned_cols=40 Identities=33% Similarity=0.613 Sum_probs=29.6
Q ss_pred CccccCChHHHHHhhCCCCCCccc-cCceeeee-ecccceee
Q psy18026 194 SLTINTDMATIVRVMARPESGLEI-RDRMWLKI-TIPNAFIG 233 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~p~sgl~~-~~r~wlki-~~~~~~~g 233 (246)
.+.-|+|...+.=..+..-.||+| ++-.|+.| ++|++||-
T Consensus 215 G~~~HtD~g~lTlL~Qd~v~GLQV~~~g~Wi~V~p~pgalvV 256 (348)
T PLN02912 215 GLPGHKDANLITVLLQDEVSGLQVFKDGKWIAVNPIPNTFIV 256 (348)
T ss_pred CcCCCcCCCceEEEEECCCCceEEEECCcEEECCCcCCeEEE
Confidence 455688887665555556789999 56699999 47888864
No 105
>PLN02997 flavonol synthase
Probab=33.47 E-value=13 Score=34.10 Aligned_cols=41 Identities=24% Similarity=0.537 Sum_probs=29.6
Q ss_pred cCccccCChHHHHHhhCCCCCCccc-cCceeeeee-cccceee
Q psy18026 193 LSLTINTDMATIVRVMARPESGLEI-RDRMWLKIT-IPNAFIG 233 (246)
Q Consensus 193 ~~l~v~~~~~~v~~~m~~p~sgl~~-~~r~wlki~-~~~~~~g 233 (246)
..+.-|||...+.=..+..-.||+| ++-.|+.++ +|.+||-
T Consensus 200 ~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~Wi~V~p~pgalvV 242 (325)
T PLN02997 200 IGAAAHSDMGAIALLIPNEVPGLQAFKDEQWLDLNYINSAVVV 242 (325)
T ss_pred cCccCccCCCceEEEecCCCCCEEEeECCcEEECCCCCCeEEE
Confidence 3456788887765555556789999 667899985 6777753
No 106
>KOG1703|consensus
Probab=33.21 E-value=38 Score=32.88 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=60.0
Q ss_pred cccEEEEcccCCCCCCCeEEEEecCCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy18026 48 FLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125 (246)
Q Consensus 48 ~LG~sI~gg~~~~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V~L~V~r~ 125 (246)
.|||.+.++ + ....+-|..+.+++.++... +..+|.+..+++.+-..+.|.++..-.+.. .....+.+.|.
T Consensus 9 ~~~~r~~~~-~--~~~~l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~ 79 (479)
T KOG1703|consen 9 PWGFRLQGG-D--FLQPLRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKGS---GSQLALTLSRS 79 (479)
T ss_pred Cceeeeccc-c--cccccceeccCCCCcccccc-ccccccccccccccccccccccccCccccc---ccccccccccc
Confidence 566766654 2 46678999999999998877 999999999999999999999999999888 67788888773
No 107
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=33.19 E-value=23 Score=26.48 Aligned_cols=12 Identities=42% Similarity=0.960 Sum_probs=8.6
Q ss_pred Cceeeeeecccc
Q psy18026 219 DRMWLKITIPNA 230 (246)
Q Consensus 219 ~r~wlki~~~~~ 230 (246)
.+.|.|||||..
T Consensus 4 ~~~WfKVtIp~G 15 (88)
T PF09162_consen 4 SSSWFKVTIPYG 15 (88)
T ss_dssp S--EEEEEETTG
T ss_pred CCcEEEEEecCC
Confidence 468999999974
No 108
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=32.86 E-value=72 Score=31.12 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=33.8
Q ss_pred hcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcE
Q psy18026 78 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPI 118 (246)
Q Consensus 78 ~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V 118 (246)
..|.+..||.++-|+++-.+|-|..++++++++. +..|
T Consensus 386 ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~a---G~~V 423 (477)
T PRK05500 386 IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSA---GLNV 423 (477)
T ss_pred EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHC---CCEE
Confidence 4567889999999999999999999999999998 5654
No 109
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=32.21 E-value=71 Score=27.83 Aligned_cols=50 Identities=26% Similarity=0.445 Sum_probs=34.0
Q ss_pred hhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCC-CCcEEEEEEecCC
Q psy18026 75 AVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAKCWD 127 (246)
Q Consensus 75 ~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~-~~~V~L~V~r~~~ 127 (246)
+.....++++|+.|++|.+... +.+.|.+.|+.+.++ +....+.+.+.|.
T Consensus 122 p~g~vArVk~Gqiifei~~~~~---~~~~AkeALrrA~~KlP~~~kIv~~~~wg 172 (213)
T PTZ00173 122 PNGTCARVRIGQILLSIRTKEA---YVPQAIEALRRAKYKFPGRQKIVVSNKWG 172 (213)
T ss_pred ccEEEEEECcCCEEEEEecccC---CHHHHHHHHHHhcccCCCeEEEEEecccC
Confidence 3333456899999999977543 467788888877543 4446777776553
No 110
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=32.00 E-value=43 Score=26.61 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=26.5
Q ss_pred CCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhc
Q psy18026 72 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (246)
Q Consensus 72 ~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~ 111 (246)
+|.+..-..++.+|+.|++|.+ .+.+.|.+.|+.+
T Consensus 86 KG~~~~~varV~~G~ilfEi~~-----~~~~~a~~al~~a 120 (126)
T TIGR01164 86 KGNPEYWVAVVKPGKILFEIAG-----VPEEVAREAFRLA 120 (126)
T ss_pred CCCCCEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHH
Confidence 4445555567899999999988 4567888888876
No 111
>PLN02276 gibberellin 20-oxidase
Probab=31.99 E-value=14 Score=34.53 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=29.3
Q ss_pred cCccccCChHHHHHhhCCCCCCccc-cCceeeeee-ccccee
Q psy18026 193 LSLTINTDMATIVRVMARPESGLEI-RDRMWLKIT-IPNAFI 232 (246)
Q Consensus 193 ~~l~v~~~~~~v~~~m~~p~sgl~~-~~r~wlki~-~~~~~~ 232 (246)
..+.-|+|...|.=..+..-.||+| ++-.|+.|+ +|.+||
T Consensus 223 ~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~Wi~V~p~pgalV 264 (361)
T PLN02276 223 LGTGPHCDPTSLTILHQDQVGGLQVFVDNKWRSVRPRPGALV 264 (361)
T ss_pred cCCccccCCceeEEEEecCCCceEEEECCEEEEcCCCCCeEE
Confidence 3455789987655444555689999 566999996 788876
No 112
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=31.82 E-value=42 Score=27.07 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=27.8
Q ss_pred CCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccC
Q psy18026 72 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (246)
Q Consensus 72 ~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~ 113 (246)
+|.+..-..++.+|+.|+++.+ .+.+.|.+.|+.+.+
T Consensus 87 KG~~~~~varVk~G~iifEi~~-----~~~~~a~~al~~a~~ 123 (138)
T PRK09203 87 KGSPEYWVAVVKPGRILFEIAG-----VSEELAREALRLAAA 123 (138)
T ss_pred CCCCcEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHHhc
Confidence 4455555567899999999988 356788999988743
No 113
>PLN02216 protein SRG1
Probab=31.17 E-value=14 Score=34.42 Aligned_cols=41 Identities=27% Similarity=0.608 Sum_probs=29.6
Q ss_pred cCccccCChHHHHHhhC-CCCCCccc-cCceeeee-ecccceee
Q psy18026 193 LSLTINTDMATIVRVMA-RPESGLEI-RDRMWLKI-TIPNAFIG 233 (246)
Q Consensus 193 ~~l~v~~~~~~v~~~m~-~p~sgl~~-~~r~wlki-~~~~~~~g 233 (246)
..+.-|||...+.=.++ ..-.||+| ++-.|+.+ ++|.+||-
T Consensus 227 ~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~pgalvV 270 (357)
T PLN02216 227 IGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVV 270 (357)
T ss_pred cCccCcccCceEEEEEecCCCCceeEEECCEEEECCCCCCeEEE
Confidence 34667899876654444 24689999 55689999 58999874
No 114
>PLN02704 flavonol synthase
Probab=30.38 E-value=18 Score=33.29 Aligned_cols=39 Identities=33% Similarity=0.728 Sum_probs=29.3
Q ss_pred CccccCChHHHHHhhCCCCCCccc-cCceeeeee-ccccee
Q psy18026 194 SLTINTDMATIVRVMARPESGLEI-RDRMWLKIT-IPNAFI 232 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~p~sgl~~-~~r~wlki~-~~~~~~ 232 (246)
.+.-|+|...+.=..+....||+| ++..|+.++ +|.+||
T Consensus 217 g~~~HtD~g~lTlL~qd~v~GLQV~~~g~Wi~V~p~pg~lv 257 (335)
T PLN02704 217 GVVAHTDMSAITILVPNEVQGLQVFRDDHWFDVKYIPNALV 257 (335)
T ss_pred CccCccCCcceEEEecCCCCceeEeECCEEEeCCCCCCeEE
Confidence 455789987766555567789999 677999994 677765
No 115
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=30.18 E-value=94 Score=26.68 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCCCCCCEEEEECCeecccCCHHHHHHHHHhc
Q psy18026 80 GRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (246)
Q Consensus 80 GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~ 111 (246)
|.+..|+.++-|+++-.+|-|..+++++|+++
T Consensus 113 g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~ 144 (206)
T PRK13809 113 GLFTPGQTCLVINDMVSSGKSIIETAVALEEE 144 (206)
T ss_pred cccCCCCEEEEEEeccccCHHHHHHHHHHHHC
Confidence 45779999999999999999999999999998
No 116
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=30.03 E-value=91 Score=26.40 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCc
Q psy18026 82 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP 117 (246)
Q Consensus 82 L~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~ 117 (246)
+..||+++-|+++-.+|-|...++++++++ ++.
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~a---Ga~ 146 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQA---GAK 146 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHC---CCE
Confidence 779999999999999999999999999998 555
No 117
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=28.73 E-value=1.1e+02 Score=25.55 Aligned_cols=33 Identities=33% Similarity=0.590 Sum_probs=30.7
Q ss_pred cCCCCCCCEEEEECCeecccCCHHHHHHHHHhc
Q psy18026 79 DGRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (246)
Q Consensus 79 ~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~ 111 (246)
.|.+..|+.++-|+++--+|-|..+++++|+++
T Consensus 101 ~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~ 133 (176)
T PRK13812 101 EGRLDEGEEVVVLEDIATTGQSAVDAVEALREA 133 (176)
T ss_pred EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHC
Confidence 456889999999999999999999999999998
No 118
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=28.64 E-value=1.1e+02 Score=25.81 Aligned_cols=50 Identities=32% Similarity=0.415 Sum_probs=31.6
Q ss_pred CCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCC-CCcEEEEEEe
Q psy18026 72 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAK 124 (246)
Q Consensus 72 ~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~-~~~V~L~V~r 124 (246)
.|.+.....++++|+.|++|.++.. +.+.|.+.|+.+.++ +....+.+.+
T Consensus 116 kG~p~~wva~Vk~G~ilfei~~~~~---~~~~akeAlr~a~~KLP~k~kiv~~~ 166 (172)
T PRK04199 116 FGKPVGTAARVEKGQKIFTVRVNPE---HLEAAKEALRRAAMKLPTPCRIVVEK 166 (172)
T ss_pred CCCccEEEEEECcCCEEEEEEecCC---CHHHHHHHHHHhhccCCCcEEEEEec
Confidence 3344445556899999999976544 466788888877443 2224444443
No 119
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=28.16 E-value=1.1e+02 Score=26.29 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=33.1
Q ss_pred hcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCcE
Q psy18026 78 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPI 118 (246)
Q Consensus 78 ~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~V 118 (246)
..|....|++++-|+++-..|-+--+|++.|++. ++.|
T Consensus 105 ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~---G~~V 142 (201)
T COG0461 105 IEGGEVKGEKVVVVEDVITTGGSILEAVEALREA---GAEV 142 (201)
T ss_pred eEecCCCCCEEEEEEecccCCHhHHHHHHHHHHc---CCeE
Confidence 3455668999999999999999999999999998 6664
No 120
>PLN02293 adenine phosphoribosyltransferase
Probab=28.08 E-value=1.1e+02 Score=25.75 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCc
Q psy18026 80 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP 117 (246)
Q Consensus 80 GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~ 117 (246)
|.+..|+.++-|+++--+|-|...++++++++ +..
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~---Ga~ 154 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERA---GAE 154 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHC---CCE
Confidence 45789999999999999999999999999998 555
No 121
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=27.89 E-value=16 Score=33.31 Aligned_cols=38 Identities=29% Similarity=0.520 Sum_probs=27.3
Q ss_pred ccccCChHHHHHhhCC-CCCCccc-cCceeeeee-cc-ccee
Q psy18026 195 LTINTDMATIVRVMAR-PESGLEI-RDRMWLKIT-IP-NAFI 232 (246)
Q Consensus 195 l~v~~~~~~v~~~m~~-p~sgl~~-~~r~wlki~-~~-~~~~ 232 (246)
+.-|+|...+.=..+. ...||+| ++-.|+.|+ +| ++||
T Consensus 172 ~~~HtD~g~lTlL~q~~~v~GLqV~~~g~Wi~V~p~p~~~lv 213 (303)
T PLN02403 172 LREHTDAGGIILLLQDDQVPGLEFLKDGKWVPIPPSKNNTIF 213 (303)
T ss_pred ccCccCCCeEEEEEecCCCCceEeccCCeEEECCCCCCCEEE
Confidence 4468888776544443 3689999 667899997 57 6885
No 122
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=27.48 E-value=19 Score=33.56 Aligned_cols=40 Identities=28% Similarity=0.649 Sum_probs=28.0
Q ss_pred CccccCChHHHHHhhCC-CCCCccc-cCceeeeee-cccceee
Q psy18026 194 SLTINTDMATIVRVMAR-PESGLEI-RDRMWLKIT-IPNAFIG 233 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~-p~sgl~~-~~r~wlki~-~~~~~~g 233 (246)
.+.-|+|...|.=..+. .-+||+| ++..|+.++ +|++||-
T Consensus 231 g~~~HtD~g~lTlL~q~~~v~GLQV~~~g~W~~V~p~pgalVV 273 (362)
T PLN02393 231 GLSPHSDPGGMTILLPDDNVAGLQVRRDDAWITVKPVPDAFIV 273 (362)
T ss_pred ccccccCCceEEEEeeCCCCCcceeeECCEEEECCCCCCeEEE
Confidence 46678888765333332 3589999 566899995 7888873
No 123
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=27.19 E-value=1.2e+02 Score=24.99 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=29.9
Q ss_pred CCCCCCCEEEEECCeecccCCHHHHHHHHHhc
Q psy18026 80 GRIEPGDMILQVNDINFENMSNDEAVRVLREV 111 (246)
Q Consensus 80 GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~ 111 (246)
|.+..|+.++-|+++--+|-|..+++++|+++
T Consensus 103 g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~ 134 (173)
T TIGR00336 103 GELLEGDKVVVVEDVITTGTSILEAVEIIQAA 134 (173)
T ss_pred cCCCCCCEEEEEeccccChHHHHHHHHHHHHc
Confidence 45779999999999999999999999999998
No 124
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=27.07 E-value=1.2e+02 Score=24.26 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=29.9
Q ss_pred CCCCCCCEEEEECCeec-ccCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy18026 80 GRIEPGDMILQVNDINF-ENMSNDEAVRVLREVVQKPGPIKLVVAK 124 (246)
Q Consensus 80 GrL~~GD~Il~VNg~~~-~~~s~~eav~lLr~~~~~~~~V~L~V~r 124 (246)
.++++||.|+. |.++ .|-++++|+..|+.++ |..+|++
T Consensus 41 ~~v~~gdilVa--G~nFG~GSSRE~A~~al~~~G-----i~~VIA~ 79 (129)
T cd01674 41 TKTKQGDILVS--GFNFGTGSSREQAATALLAKG-----IPLVVSG 79 (129)
T ss_pred hcCCCCCEEEe--CCccCCCCcHHHHHHHHHHcC-----ccEEEec
Confidence 45889998864 6666 5779999999999873 6777776
No 125
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=26.92 E-value=1e+02 Score=26.00 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCc
Q psy18026 81 RIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP 117 (246)
Q Consensus 81 rL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~ 117 (246)
.+..||.++-|+++-.+|-|...++++++++ ++.
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~a---Ga~ 146 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQA---GAK 146 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHC---CCE
Confidence 4789999999999999999999999999998 555
No 126
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=26.08 E-value=23 Score=32.86 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=30.6
Q ss_pred cCccccCChHHHHHhhCCCCCCccc-cCceeeee-ecccceee
Q psy18026 193 LSLTINTDMATIVRVMARPESGLEI-RDRMWLKI-TIPNAFIG 233 (246)
Q Consensus 193 ~~l~v~~~~~~v~~~m~~p~sgl~~-~~r~wlki-~~~~~~~g 233 (246)
..+.-|||...+.=..+..-.||+| ++-.|+-| ++|++||-
T Consensus 217 ~g~~aHTD~g~lTlL~Qd~v~GLQV~~~g~Wv~V~p~pgalVV 259 (341)
T PLN02984 217 PGMEVHTDSSVISILNQDEVGGLEVMKDGEWFNVKPIANTLVV 259 (341)
T ss_pred cCccCccCCCceEEEEeCCCCCeeEeeCCceEECCCCCCeEEE
Confidence 3466789987765555556789999 56689999 58888864
No 127
>CHL00044 rpl16 ribosomal protein L16
Probab=25.83 E-value=40 Score=27.16 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=26.6
Q ss_pred CCChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhcc
Q psy18026 72 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV 112 (246)
Q Consensus 72 ~gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~ 112 (246)
+|.+.+-..++.+|+.|+++.|++. +.|.+.|+.+.
T Consensus 87 KG~~~~~va~V~~G~ilfEi~g~~~-----~~ak~al~~a~ 122 (135)
T CHL00044 87 KGSPEYWVAVVKPGRILYEMGGVSE-----TIARAAIKIAA 122 (135)
T ss_pred CCCccEEEEEECCCcEEEEEeCCCH-----HHHHHHHHHHh
Confidence 4455555567999999999988553 57888888773
No 128
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=23.45 E-value=21 Score=33.33 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=28.3
Q ss_pred CccccCChHHHHHhhCCCCCCccccCc---eeeee-ecccceee
Q psy18026 194 SLTINTDMATIVRVMARPESGLEIRDR---MWLKI-TIPNAFIG 233 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~p~sgl~~~~r---~wlki-~~~~~~~g 233 (246)
.+.-|+|...+.=..+..-.||+|+.+ .|+.+ ++|.+||-
T Consensus 213 G~~~HTD~g~lTlL~Qd~v~GLQV~~~~~~~Wi~Vpp~pgalVV 256 (358)
T PLN02515 213 GLKRHTDPGTITLLLQDQVGGLQATRDGGKTWITVQPVEGAFVV 256 (358)
T ss_pred CCCCCCCCCeEEEEecCCCCceEEEECCCCeEEECCCCCCeEEE
Confidence 455688887765444455689999654 59999 47888864
No 129
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=22.93 E-value=43 Score=27.44 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=27.3
Q ss_pred CChhhhcCCCCCCCEEEEECCeecccCCHHHHHHHHHhccC
Q psy18026 73 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 113 (246)
Q Consensus 73 gg~A~~~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~ 113 (246)
|++..-..++++|+.|++|.|++-+- |.+.|+.+.+
T Consensus 91 G~pegwaArVkpG~vlfei~g~~e~~-----A~EAlr~Aa~ 126 (146)
T COG0197 91 GKPEGWAARVKPGRVLFEIAGVPEEL-----AREALRRAAA 126 (146)
T ss_pred CCccEEEEEecCCcEEEEEecCcHHH-----HHHHHHHHhh
Confidence 55555566799999999999877543 8888887744
No 130
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=22.30 E-value=27 Score=32.57 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=28.1
Q ss_pred CccccCChHHHHHhhCCC--CCCcccc-Cceeeeee-cccceee
Q psy18026 194 SLTINTDMATIVRVMARP--ESGLEIR-DRMWLKIT-IPNAFIG 233 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~p--~sgl~~~-~r~wlki~-~~~~~~g 233 (246)
.+.-|+|...+.=.++.. -.||+|+ +-.|+.|+ +|.+||-
T Consensus 229 g~~~HtD~g~lTlL~qd~~~v~GLQV~~~g~Wi~V~p~pgalVV 272 (361)
T PLN02758 229 GLSPHSDGSALTVLQQGKGSCVGLQILKDNTWVPVHPVPNALVI 272 (361)
T ss_pred CccCccCCceeEEEEeCCCCCCCeeeeeCCEEEeCCCCCCeEEE
Confidence 455689987665444433 4599994 66899994 7888873
No 131
>PLN02947 oxidoreductase
Probab=22.19 E-value=27 Score=32.83 Aligned_cols=40 Identities=20% Similarity=0.497 Sum_probs=29.9
Q ss_pred CccccCChHHHHHhhCCCCCCcccc-Cceeeee-ecccceee
Q psy18026 194 SLTINTDMATIVRVMARPESGLEIR-DRMWLKI-TIPNAFIG 233 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~p~sgl~~~-~r~wlki-~~~~~~~g 233 (246)
.+.-|+|...|.=.++..-.||+|+ |-.|+.+ ++|++||-
T Consensus 243 G~~~HTD~g~lTlL~Qd~v~GLQV~~~g~Wi~V~p~pga~VV 284 (374)
T PLN02947 243 GMPPHSDYGFLTLLLQDEVEGLQIMHAGRWVTVEPIPGSFVV 284 (374)
T ss_pred CCCCccCCCceEEEEecCCCCeeEeECCEEEeCCCCCCeEEE
Confidence 4556899876654555567899995 6699998 48999874
No 132
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=21.72 E-value=26 Score=24.73 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCCCccccCc----eeeeeecccceeeccceEE
Q psy18026 211 PESGLEIRDR----MWLKITIPNAFIGKCERII 239 (246)
Q Consensus 211 p~sgl~~~~r----~wlki~~~~~~~g~~~~~~ 239 (246)
|+--|++|+- .| +++.|+.++-.|||..
T Consensus 35 ~GEvl~ikgdYa~vr~-~~PtP~vWLr~dqLe~ 66 (67)
T PF11910_consen 35 PGEVLDIKGDYAQVRF-RVPTPDVWLRLDQLEA 66 (67)
T ss_pred CCeEEEecCCEEEEEe-cCCCCchhhhhhhhhc
Confidence 4446777766 79 9999999999999864
No 133
>KOG1712|consensus
Probab=21.39 E-value=1.3e+02 Score=25.25 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=32.5
Q ss_pred cCCCCCCCEEEEECCeecccCCHHHHHHHHHhccCCCCc
Q psy18026 79 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP 117 (246)
Q Consensus 79 ~GrL~~GD~Il~VNg~~~~~~s~~eav~lLr~~~~~~~~ 117 (246)
-|.+.+|++++-|++...+|=|..-|.+++.+. ++.
T Consensus 116 ~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~---ga~ 151 (183)
T KOG1712|consen 116 KGAIKPGQRVVVVDDLLATGGTLAAATELLERV---GAE 151 (183)
T ss_pred ccccCCCCeEEEEechhhcCccHHHHHHHHHHh---ccE
Confidence 466999999999999999999999999999998 565
No 134
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=20.83 E-value=30 Score=32.13 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=28.1
Q ss_pred CccccCChHHHHHhhCC-CCCCccc-cCceeeee-ecccceee
Q psy18026 194 SLTINTDMATIVRVMAR-PESGLEI-RDRMWLKI-TIPNAFIG 233 (246)
Q Consensus 194 ~l~v~~~~~~v~~~m~~-p~sgl~~-~~r~wlki-~~~~~~~g 233 (246)
.+.-|+|...+.=..+. .-.||+| ++-.|+-| ++|++||-
T Consensus 221 g~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg~lVV 263 (348)
T PLN00417 221 GVKPHADGSAFTLLLPDKDVEGLQFLKDGKWYKAPIVPDTILI 263 (348)
T ss_pred CCcCccCCCceEEEEecCCCCceeEeECCeEEECCCCCCcEEE
Confidence 45568998776533332 3589999 56689998 47888764
No 135
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=20.46 E-value=1.5e+02 Score=24.60 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=25.6
Q ss_pred CCCEEEEECCeecccCCHHHHHHHHHhc
Q psy18026 84 PGDMILQVNDINFENMSNDEAVRVLREV 111 (246)
Q Consensus 84 ~GD~Il~VNg~~~~~~s~~eav~lLr~~ 111 (246)
.|-.|+-|+++-.+|.|..++.+.|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~ 178 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLEL 178 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHc
Confidence 3567899999999999999999999987
No 136
>PF07497 Rho_RNA_bind: Rho termination factor, RNA-binding domain; InterPro: IPR011113 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers [].; GO: 0003723 RNA binding, 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=20.18 E-value=2.1e+02 Score=20.82 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=19.8
Q ss_pred CcccEEEEcccCC-CCCCCeEEEEecCCChhhhcCCCCCCCEEE
Q psy18026 47 NFLGISIVGQSNK-GGDGGIYVGSIMKGGAVALDGRIEPGDMIL 89 (246)
Q Consensus 47 ~~LG~sI~gg~~~-~~~~gi~I~~V~~gg~A~~~GrL~~GD~Il 89 (246)
.++||--....+- +...-+||+. +...+-| |+.||.|.
T Consensus 12 dGyGFLR~~~~~y~~~~~DvYVs~----~qIrrf~-LR~GD~V~ 50 (78)
T PF07497_consen 12 DGYGFLRSPDNNYLPSPDDVYVSP----SQIRRFG-LRTGDLVE 50 (78)
T ss_dssp TS-EEEE-GGGTTS-STTSEEE-C----CCCCCTT---TTEEEE
T ss_pred CCcEEeECCCcCCCCCCCCEEECH----HHHHHcC-CCCCCEEE
Confidence 5788876652111 4567789864 3333555 99999986
Done!