RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18026
(246 letters)
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 133 bits (337), Expect = 2e-40
Identities = 75/92 (81%), Positives = 84/92 (91%)
Query: 33 SLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
+NIITVTLNM+ NFLGISIVGQSN+ GDGGIY+GSIMKGGAVA DGRIEPGDM+LQVN
Sbjct: 3 HMNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVN 62
Query: 93 DINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
D+NFENMSND+AVRVLR++V KPGPI L VAK
Sbjct: 63 DMNFENMSNDDAVRVLRDIVHKPGPIVLTVAK 94
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 120 bits (303), Expect = 5e-35
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 18 LSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQ--SNKGGDGGIYVGSIMKGGA 75
L +++ S + + LN LG+S+ G G D GI++ SI+ GGA
Sbjct: 8 LKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGA 67
Query: 76 VALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK----PGPIKLVVAKCWDPN 129
DGR+ D ++ VN SN EA+ LR + G I+LV+ + P+
Sbjct: 68 AFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPS 125
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 107 bits (269), Expect = 5e-30
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 28 TDSSMSLNIITVTLNMDTVNFLGISIVGQSN----KGGDGGIYVGSIMKGGAVALDGRIE 83
+ S L + V L D + LGISI+G GI+V ++ +GGA DGRI+
Sbjct: 2 SSGSSGLELFPVELEKDE-DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 60
Query: 84 PGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 130
D I++V+ I+ ++ + A VLR G ++ V+ + P
Sbjct: 61 VNDQIVEVDGISLVGVTQNFAATVLR---NTKGNVRFVIGREKPSGP 104
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 105 bits (263), Expect = 3e-29
Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 23 SFSSITDSSMSLNIITVTLNMDTVNFLGISIVG---QSNKGGDGGIYVGSIMKGGAVALD 79
S S SL + + DT + LGISI G QS G GIYV S++ G A ALD
Sbjct: 2 SHGYSDASGFSLYSVELFREKDT-SSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALD 60
Query: 80 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
GRIEP D IL+V+D+N + M+ + V VLR P++L++ +
Sbjct: 61 GRIEPNDKILRVDDVNVQGMAQSDVVEVLR---NAGNPVRLLLIR 102
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 106 bits (266), Expect = 5e-29
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 2 SRRRRPQRRRRHRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVG----QS 57
S RR+ S+ + L + V L D+ LGISI+G
Sbjct: 47 STYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDS-EGLGISIIGMGAGAD 105
Query: 58 NKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP 117
GI+V ++ +GGA DGRI+ D++++V+ + ++ A VLR G
Sbjct: 106 MGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR---NTKGR 162
Query: 118 IKLVVAK 124
++ ++ +
Sbjct: 163 VRFMIGR 169
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 104 bits (260), Expect = 1e-28
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVG---QSNKGGDGGIYVGSIMKGGAVAL 78
SS SS S V L LGI IVG S+ G GIYV S++ G A
Sbjct: 2 SSGSSGGSDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYH 61
Query: 79 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIP 137
+G I+ D I+ V+ +N + +N + V VLR + L + + + P
Sbjct: 62 NGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNA---GQVVHLTLVRRKTSSSTSPLEPP 117
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 103 bits (258), Expect = 2e-28
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 36 IITVTLNMDTVNFLGISIVGQSNKGG------DGGIYVGSIMKGGAVALDGRIEPGDMIL 89
I V L + N LGIS+ +KGG GGIYV +++ GA DGRI GD +L
Sbjct: 10 IFEVELAKND-NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68
Query: 90 QVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 131
VN ++ E ++ +AV LR + L++ K P K
Sbjct: 69 AVNGVSLEGATHKQAVETLR---NTGQVVHLLLEKGQSPTSK 107
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 102 bits (257), Expect = 2e-28
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 36 IITVTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
IITVTL N +G+SIV + GIYV S++KGGA +DGR+ GD +L V+
Sbjct: 12 IITVTLKKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 69
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
+ +S + A ++ + + L VAK
Sbjct: 70 SLVGLSQERAAELMT---RTSSVVTLEVAK 96
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 102 bits (256), Expect = 2e-28
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
+ +T+ L LG+SIVG+ N D G++V I+KGG DGR+ GD IL VN
Sbjct: 4 DTLTIGLQKKPGKGLGLSIVGKRN---DTGVFVSDIVKGGIADADGRLMQGDQILMVNGE 60
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
+ N + + +L+ G + L V +
Sbjct: 61 DVRNATQEAVAALLK---CSLGTVTLEVGR 87
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 102 bits (256), Expect = 3e-28
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 33 SLNIITVTLNMDTVNFLGISIVG---QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMIL 89
S+ I+ V L + LG SI G + GD IY+ I++GGA DGR++ GD +L
Sbjct: 1 SMTIMEVNL-LKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLL 59
Query: 90 QVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
VN+ N +++ ++EAV L+ + L VAK
Sbjct: 60 AVNNTNLQDVRHEEAVASLK---NTSDMVYLKVAK 91
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 100 bits (252), Expect = 2e-27
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 19 SRTSSFSSITDSSM--SLNIITVTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGA 75
+S T++ S++ V + D LG+++ G S++ D IYV S+ GG
Sbjct: 6 HHSSGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGV 65
Query: 76 VALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
++ DGRI+ GD++L V+ + +S EAV +L+ I L +
Sbjct: 66 ISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT---SSSIVLKALE 111
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 100 bits (250), Expect = 3e-27
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
N+I+V L V LG + + +K + + +++GGA G I+ GD+IL VND
Sbjct: 1 NVISVRLFKRKVGGLGFLVKERVSKPP---VIISDLIRGGAAEQSGLIQAGDIILAVNDR 57
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEPVRPI 145
++S D A+ VLR + + L++ T + I
Sbjct: 58 PLVDLSYDSALEVLRGIAS-ETHVVLILRGPEGFTTHLETTFTGDGTPKTI 107
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 100 bits (251), Expect = 3e-27
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
N+I+V L V LG + + +K + + +++GGA G I+ GD+IL VND
Sbjct: 8 NVISVRLFKRKVGGLGFLVKERVSKPP---VIISDLIRGGAAEQSGLIQAGDIILAVNDR 64
Query: 95 NFENMSNDEAVRVLRE--------VVQKPGP---IKLVVAKCWDPNPKGYFTIPRTEPVR 143
++S D A+ VLR ++ + L D PK TI T+P+
Sbjct: 65 PLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPK---TIRVTQPLG 121
Query: 144 P 144
P
Sbjct: 122 P 122
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 99.8 bits (249), Expect = 4e-27
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 13 HRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVG---QSNKGGDGGIYVGS 69
H S + S+ ++ + L LG SI G + GD IYV
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMTVVEIKLFKGP-KGLGFSIAGGVGNQHIPGDNSIYVTK 60
Query: 70 IMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
I+ GGA DGR++ GD +L VN+ + E ++++EAV +L+ + L V K
Sbjct: 61 IIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILK---NTSEVVYLKVGK 112
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 97.5 bits (243), Expect = 3e-26
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVG--QSNKGGDGGIYVGSIMKGGAVALD 79
SS SS + S + V L D LG SI+ I + S++ G
Sbjct: 2 SSGSSGELALWSPEVKIVELVKDC-KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERS 60
Query: 80 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
G + PGD ++ VN+ +N S EAV +L+ V PG + L +
Sbjct: 61 GGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV--PPGLVHLGICS 103
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 97.5 bits (243), Expect = 5e-26
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 5 RRPQRRRRHRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIV-GQSNKGGDG 63
R H S F ++ + + L T LG SI GG
Sbjct: 2 RGSHHHHHHHHG--SENLYFQGSYNTKKIGKRLNIQLKKGT-EGLGFSITSRDVTIGGSA 58
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 123
IYV +I+ GA DGR++ GD +++VN ++ S +E V +LR + G + L+V
Sbjct: 59 PIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKME-GTVSLLVF 117
Query: 124 K 124
+
Sbjct: 118 R 118
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 97.1 bits (242), Expect = 6e-26
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 25 SSITDSSMSLNIITVTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIE 83
S I + I + + + LG S+V +S G I+V + G D R++
Sbjct: 15 SVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLK 74
Query: 84 PGDMILQVNDINF-ENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRT 139
D IL +N +N+S+ +A+ +L+ Q G ++L+VA+ + K + P +
Sbjct: 75 ENDQILAINHTPLDQNISHQQAIALLQ---QTTGSLRLIVAR-EPVHTKSSTSGPSS 127
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 96.5 bits (240), Expect = 1e-25
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 34 LNIITVTLN-MDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
L + V L M++ + LG+++ +++ D GIY+ I A DGRI GD I+Q+N
Sbjct: 18 LELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQIN 77
Query: 93 DINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKG 132
I +N EAV +L ++ L++A+ +G
Sbjct: 78 GIEVQNRE--EAVALLTS--EENKNFSLLIARPELQLDEG 113
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 94.8 bits (236), Expect = 3e-25
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 34 LNIITVTLNMDTVNFLGISIVG----QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMIL 89
+ + V L D+ LGISI+G GI+V ++ +GGA DGRI+ D+++
Sbjct: 3 MELFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLV 61
Query: 90 QVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
+V+ + ++ A VLR G ++ ++ +
Sbjct: 62 EVDGTSLVGVTQSFAASVLR---NTKGRVRFMIGR 93
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 94.3 bits (235), Expect = 4e-25
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 36 IITVTLNMDTVNFLGISIVG---QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
I+ + L LG SI G + GD IYV I++GGA DG+++ GD +L VN
Sbjct: 4 IMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62
Query: 93 DINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
++ E ++++EAV L+ + L VAK
Sbjct: 63 SVSLEEVTHEEAVTALK---NTSDFVYLKVAK 91
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 94.4 bits (235), Expect = 6e-25
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGR 81
SS SS ++ ++ V L D + LG IVG G G+ V +I+ GG DGR
Sbjct: 2 SSGSSGPETVCWGHVEEVELINDG-SGLGFGIVG----GKTSGVVVRTIVPGGLADRDGR 56
Query: 82 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRT 139
++ GD IL++ N + M++++ +VLR ++++VA+ +P G ++
Sbjct: 57 LQTGDHILKIGGTNVQGMTSEQVAQVLR---NCGNSVRMLVAR----DPAGDISVTSG 107
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 94.5 bits (235), Expect = 7e-25
Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 14 RPPALSRTSSFSSITDSSMSLN--IITVTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSI 70
+ P + S + LN + ++ D+ LG+ +VG + + G ++ +
Sbjct: 13 KHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKV 72
Query: 71 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
KG G + PGD +L+ N + + +E ++ E ++LVV++
Sbjct: 73 KKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKP-EPQVELVVSR 125
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 93.6 bits (233), Expect = 1e-24
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 28 TDSSMSLNIITVTLNMDTVNFLGISIVG-------QSNKGGDGGIYVGSIMKGGAVALDG 80
+ S + + + LGISI G D GI++ + GA DG
Sbjct: 2 SSGSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDG 61
Query: 81 RIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 130
R+ G +L+VN + +++ EAV++LR V + ++V ++ P
Sbjct: 62 RLRVGLRLLEVNQQSLLGLTHGEAVQLLRSV---GDTLTVLVCDGFESGP 108
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 93.7 bits (233), Expect = 1e-24
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 5/112 (4%)
Query: 13 HRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMK 72
H S + S+ VTL D N +GISI G +Y+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMVPGKVTLQKDAQNLIGISIGG--GAQYCPCLYIVQVFD 59
Query: 73 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
ALDG + GD I VN + + + E ++++EV G + + K
Sbjct: 60 NTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV---KGEVTIHYNK 108
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 92.0 bits (229), Expect = 5e-24
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 13 HRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIV-GQSNKGGDGGIYVGSIM 71
H S + S+ + TV + + LGISI G + GD I++ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMH 61
Query: 72 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
G A ++ GD I+ + + E M++ +AV +L+ G I++ V
Sbjct: 62 PTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA---SGSIEMQVVA 111
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 91.8 bits (228), Expect = 8e-24
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 13 HRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVG-------QSNKGGDGGI 65
H S + S+ V L + LGISIVG SN GI
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGI 61
Query: 66 YVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
++ +++ +G ++PGD I++V+ ++ + S+++AV +R+ P+ +V
Sbjct: 62 FIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA---GNPVVFMV 115
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 89.9 bits (224), Expect = 2e-23
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 36 IITVTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
I V L + N LGIS+ G + GGIYV +++ GA DGRI GD +L VN +
Sbjct: 6 IFEVELAKND-NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDP 128
+ E ++ +AV LR + L++ K P
Sbjct: 65 SLEGATHKQAVETLR---NTGQVVHLLLEKGQSP 95
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 90.0 bits (224), Expect = 2e-23
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 36 IITVTLNMDTVNFLGISIVG--QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
V L V LGI+I G K GI+V SI K AV DGRI+ GD I+ V+
Sbjct: 5 TFDVELT-KNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDG 63
Query: 94 INFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
N + +N +AV VLR + L + +
Sbjct: 64 TNLQGFTNQQAVEVLR---HTGQTVLLTLMR 91
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 90.1 bits (224), Expect = 2e-23
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
L V L LG+S+ + G + +++G +D +++ GD+I + N
Sbjct: 1 LEKFNVDLMKKAGKELGLSLSP-----NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNG 55
Query: 94 INFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRT 139
E + + + G + + V + + +PR
Sbjct: 56 DALEGLPFQVCYALFKGA---NGKVSMEVTRPKPGSGGSGSLVPRL 98
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 90.6 bits (225), Expect = 2e-23
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 19 SRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIV-GQSNKGGDGGIYVGSIMKGGAVA 77
S +++ +S+ + TVTL + LG S+ G+ + GD + + I KG A
Sbjct: 13 SASAASDVSVESTAEATVCTVTLEKMS-AGLGFSLEGGKGSLHGDKPLTINRIFKGAASE 71
Query: 78 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
++PGD ILQ+ + ++ EA +++ + GP+ +V+ +
Sbjct: 72 QSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL--PDGPVTIVIRR 116
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 89.7 bits (223), Expect = 4e-23
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 13 HRPPALSRTSSFSSITDSSMSL-NIITVTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSI 70
H S + S+ ++TL LG SIVG + GD IYV ++
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMPQCKSITLERGPDG-LGFSIVGGYGSPHGDLPIYVKTV 60
Query: 71 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
GA + DGR++ GD I+ VN + E ++++EAV +L+ G + L+V
Sbjct: 61 FAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT---KGTVTLMVLS 111
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 89.4 bits (222), Expect = 7e-23
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 19 SRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVAL 78
S +S + S + ++ TL G +I+G D + V S++ G A
Sbjct: 3 SGSSGLFTRDASQLKGTFLSTTLKKSN-MGFGFTIIGGDE--PDEFLQVKSVIPDGPAAQ 59
Query: 79 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
DG++E GD+I+ +N++ ++ + V++ + V + LV+ +
Sbjct: 60 DGKMETGDVIVYINEVCVLGHTHADVVKLFQS-VPIGQSVNLVLCR 104
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 88.9 bits (221), Expect = 7e-23
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 36 IITVTLNMDTVNFLGISIV-GQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
+ + L T LG SI GG IYV +I+ GA DGR++ GD +++VN +
Sbjct: 12 RLNIQLKKGT-EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 70
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
+ S +E V +LR + G + L+V +
Sbjct: 71 DLAGKSQEEVVSLLRSTKME-GTVSLLVFR 99
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 87.8 bits (218), Expect = 2e-22
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 25 SSITDSSMSLNIITVTLNMDTVNFLGISIVG-QSNKGGDGGIYVGSIMKGGAVALDGRIE 83
I + + ++ L LG S+VG +S G+ GI+V I +G DGR++
Sbjct: 10 QLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLK 69
Query: 84 PGDMILQVNDINF-ENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGY 133
D IL +N + +++ +A+ +L+ + ++LV+A+ P+ Y
Sbjct: 70 ETDQILAINGQALDQTITHQQAISILQ---KAKDTVQLVIAR--GSLPQYY 115
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 86.6 bits (215), Expect = 3e-22
Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 33 SLNIITVTLN-MDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQV 91
S+ I+ V L+ D+ LGI +V + + G+++ +++GG A DGR+ D +L +
Sbjct: 1 SMEILQVALHKRDSGEQLGIKLVR---RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAI 57
Query: 92 NDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDP 128
N + + + + A ++++ + L +A+ P
Sbjct: 58 NGHDLKYGTPELAAQIIQ---ASGERVNLTIARPGKP 91
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 86.6 bits (215), Expect = 3e-22
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 33 SLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
SL V L LG+S+ + G + +++G +D +++ GD+I + N
Sbjct: 6 SLEKFNVDLMKKAGKELGLSLSP-----NEIGCTIADLIQGQYPEIDSKLQRGDIITKFN 60
Query: 93 DINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
E + + + + G + + V +
Sbjct: 61 GDALEGLPFQVSYALFKGA---NGKVSMEVTR 89
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 86.6 bits (215), Expect = 4e-22
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 49 LGISIVG---QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG +IVG Q D GIYV I + GA ALDGR++ GD IL VN + +N+ + +AV
Sbjct: 20 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 79
Query: 106 RVLREVVQKPGPIKLVVAKCWDPN 129
+ R + L V + +
Sbjct: 80 DLFR---NAGYAVSLRVQHRLESS 100
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 86.2 bits (214), Expect = 5e-22
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 36 IITVTLNMDTVNFLGISIVG----QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQV 91
I VTL+ GI IV S GI++ I+ L GR++ GD IL +
Sbjct: 6 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Query: 92 NDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
N + N + + +++E I+L +
Sbjct: 66 NGKDVRNSTEQAVIDLIKEA---DFKIELEIQT 95
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 86.3 bits (214), Expect = 8e-22
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNF-LGISIVG---QSNKGGDGGIYVGSIMKGGAVA 77
SS SS + + + +N+ LG +IVG Q D GIYV I + GA A
Sbjct: 2 SSGSSGMNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAA 61
Query: 78 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
LDGR++ GD IL VN + +N+ + +AV + R + L V
Sbjct: 62 LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR---NAGYAVSLRVQH 105
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 85.4 bits (212), Expect = 1e-21
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 26 SITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPG 85
S S + +V L G+++ G + GD + V ++K G GR+E G
Sbjct: 2 SSGSSGQASGHFSVELVRGY-AGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVG 60
Query: 86 DMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
D++L +N + + +++ +AV +R + LV+ +
Sbjct: 61 DLVLHINGESTQGLTHAQAVERIR---AGGPQLHLVIRR 96
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 84.6 bits (210), Expect = 2e-21
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 33 SLNIITVTLNMDTVNFLGISIVG--QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQ 90
S+ + VTL+ + N G I G ++ + + S+ GG +G I+PGD +L
Sbjct: 1 SMRTVEVTLHKEG-NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLS 59
Query: 91 VNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 130
V+ I ++ EA+ +L+ Q L++ D +
Sbjct: 60 VDGIRLLGTTHAEAMSILK---QCGQEAALLIEY--DVSE 94
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 85.2 bits (211), Expect = 2e-21
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 5/113 (4%)
Query: 10 RRRHRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGS 69
H S ++ I V L + LGISI G K I +
Sbjct: 2 HHHHHHHHHSSGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITG--GKEHGVPILISE 59
Query: 70 IMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
I G G + GD IL VN +N + + EAV +L Q+ G I+ V
Sbjct: 60 IHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS---QQRGEIEFEV 109
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 84.7 bits (210), Expect = 2e-21
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 29 DSSMSLNIITVTLNMDTVNFLGISIV-GQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDM 87
S S + TV L + LG+ ++ G G G+Y+ +++ G A DGR+ GD
Sbjct: 2 SSGSSGYVFTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDR 60
Query: 88 ILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIP 137
IL+VN + + AV ++R ++ +VAK K + P
Sbjct: 61 ILEVNGSSLLGLGYLRAVDLIR---HGGKKMRFLVAKSDVETAKKIHSGP 107
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 84.3 bits (209), Expect = 3e-21
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 49 LGISIVG---QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G + D GI++ I+ GGA A+DGR+ D +L+VN+++ + + AV
Sbjct: 17 LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAV 76
Query: 106 RVLREVVQKPGPIKLVVAK 124
L+ + ++LVV +
Sbjct: 77 EALK---EAGPVVRLVVRR 92
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 84.3 bits (209), Expect = 3e-21
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 28 TDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDM 87
+ S + V L + G I+G I +G+++ G+ DGR+ PGD
Sbjct: 2 SSGSSGYKELDVHLRRME-SGFGFRILGG--DEPGQPILIGAVIAMGSADRDGRLHPGDE 58
Query: 88 ILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
++ V+ I ++ + ++ + G + L V +
Sbjct: 59 LVYVDGIPVAGKTHRYVIDLMHHAAR-NGQVNLTVRR 94
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 84.3 bits (209), Expect = 3e-21
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
Query: 13 HRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMK 72
H S + S++ TV L G S+ G + + +YV + +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMDFYTVELERGAKG-FGFSLRG--GREYNMDLYVLRLAE 58
Query: 73 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
G G++ GD IL++N +NM + A+ +++ ++L + +
Sbjct: 59 DGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK---NGGRRVRLFLKR 107
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 84.3 bits (209), Expect = 3e-21
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 49 LGISIVG----QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEA 104
LG SI G + GD GI+V I +GGA G ++ GD +L +N ++ +D A
Sbjct: 20 LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHA 79
Query: 105 VRVLREVVQKPGPIKLVVAKCWDPNP 130
V +L I L++ + P
Sbjct: 80 VSLLT---AASPTIALLLEREAGSGP 102
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 84.4 bits (209), Expect = 5e-21
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 29 DSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMI 88
+ VTL D N +GISI G +Y+ + ALDG + GD I
Sbjct: 13 KLGIPTVPGKVTLQKDAQNLIGISIGG--GAQYCPCLYIVQVFDNTPAALDGTVAAGDEI 70
Query: 89 LQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
VN + + + E ++++EV G + + K
Sbjct: 71 TGVNGRSIKGKTKVEVAKMIQEV---KGEVTIHYNK 103
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 83.2 bits (206), Expect = 7e-21
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 33 SLNIITVTLNMDTVNFLGISIVGQSNKG-------GDGGIYVGSIMKGGAVALDGRIEPG 85
S+ V L + LGISIVG G GI++ +++ +G ++PG
Sbjct: 2 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 61
Query: 86 DMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
D I++V+ ++ + S+++AV +R+ P+ +V
Sbjct: 62 DRIVEVDGMDLRDASHEQAVEAIRKA---GNPVVFMV 95
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 82.9 bits (205), Expect = 9e-21
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 32 MSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQV 91
S + T+ + LGI+I G +N + +I +GG+ G+++ G +IL+V
Sbjct: 2 SSGSSGTLVRVKKSAATLGIAIEGGAN-TRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60
Query: 92 NDINFENMSNDEAVRVLREVVQK--PGPIKLVVAK 124
N + + EA R++ E + I +V +
Sbjct: 61 NGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTE 95
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 82.3 bits (204), Expect = 1e-20
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G I+G IY+G I+ GA DGR+ GD ++ V+ S+ V+++
Sbjct: 15 FGFRILG--GNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLM 72
Query: 109 REVVQKPGPIKLVVAK 124
++ ++ G + L V +
Sbjct: 73 QQAAKQ-GHVNLTVRQ 87
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 82.8 bits (205), Expect = 1e-20
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 26 SITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPG 85
S S + TV + G SI G + +YV + + G +GR+ G
Sbjct: 2 SSGSSGQDFDYFTVDMEKGA-KGFGFSIRG--GREYKMDLYVLRLAEDGPAIRNGRMRVG 58
Query: 86 DMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
D I+++N + +M++ A+ +++ ++L++ +
Sbjct: 59 DQIIEINGESTRDMTHARAIELIK---SGGRRVRLLLKR 94
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 82.9 bits (205), Expect = 1e-20
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGR 81
SS SS + +T+ +T LG+ I+G N+ +Y+ ++ GG DGR
Sbjct: 2 SSGSSGSPLDRDPAFRVITVTKETG--LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGR 59
Query: 82 IEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAK 124
++PGD ++ +N + +S +EA ++ + P ++ +
Sbjct: 60 LKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 103
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 81.5 bits (202), Expect = 2e-20
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG +I+G K + IY+ ++ GG G ++ GD +L VN ++ E +++AV +L
Sbjct: 18 LGFNIMGG--KEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELL 75
Query: 109 REVVQKPGPIKLVVAKCWDPNP 130
+ G +KLVV P+
Sbjct: 76 K---AAQGSVKLVVRS--GPSS 92
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 82.0 bits (203), Expect = 2e-20
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 29 DSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMI 88
S I V L + LGISI G I + I G G + GD I
Sbjct: 3 KSQGVGPIRKVLLLKEDHEGLGISITGGKEH--GVPILISEIHPGQPADRCGGLHVGDAI 60
Query: 89 LQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
L VN +N + + EAV +L Q+ G I+ V
Sbjct: 61 LAVNGVNLRDTKHKEAVTILS---QQRGEIEFEV 91
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 82.0 bits (203), Expect = 3e-20
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 30 SSMSLNIITVTLNMDTVNFLGISIVG----QSNKGGDGGIYVGSIMKGGAVALDGRIEPG 85
S M TVTL+ GI+I G + G+ I + ++KGG +G+++
Sbjct: 2 SHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQEN 59
Query: 86 DMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
D + VN ++ +N+ + AV+ LR + K+ +
Sbjct: 60 DRVAMVNGVSMDNVEHAFAVQQLR---KSGKNAKITI 93
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 82.1 bits (203), Expect = 3e-20
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Query: 21 TSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDG 80
+ +++ L + L +++ G + G + V ++ +GGA G
Sbjct: 2 SEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVD-SPVGKVVVSAVYEGGAAERHG 60
Query: 81 RIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP-IKLVVAKC 125
+ GD I+ +N + + EA L++ + G I LVVA C
Sbjct: 61 GVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 81.2 bits (201), Expect = 4e-20
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG+SIVG S+ G I + + + GA DGR+ GD IL+VN I+ ++DEA+ VL
Sbjct: 17 LGLSIVGGSDTL-LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVL 75
Query: 109 REVVQKPGPIKLVVAKCWDP 128
R Q P ++L + + P
Sbjct: 76 R---QTPQRVRLTLYRDEAP 92
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 83.7 bits (207), Expect = 4e-20
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 18 LSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVA 77
++ F S V L LGI+I S++ + + I KG
Sbjct: 90 VTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAH 149
Query: 78 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
G +E GD +L +++I ++ S ++AV++L++ +KL + K
Sbjct: 150 RTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC---EDLVKLKIRK 193
Score = 81.0 bits (200), Expect = 5e-19
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 36 IITVTLNMDTVNFLGISIVG--QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
V L D V GI + G + + + I G ++ GD ++ +N
Sbjct: 7 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 66
Query: 94 INFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEPVRPIDPGA 149
I E+ + +EA ++LR K+ + +D + P
Sbjct: 67 IPTEDSTFEEANQLLR---DSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSV 119
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 80.4 bits (199), Expect = 5e-20
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 37 ITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINF 96
I L + G ++VG D + + S++ G ALDG++E GD+I+ VND
Sbjct: 2 IHTKLRKSS-RGFGFTVVG--GDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCV 58
Query: 97 ENMSNDEAVRVLREVVQKPGPIKLVVAK 124
++ + V++ + + + L + +
Sbjct: 59 LGHTHAQVVKIFQS-IPIGASVDLELCR 85
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 80.8 bits (200), Expect = 6e-20
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 31 SMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQ 90
S I TV L LGI+I G + I + S+ KGG G I GD IL
Sbjct: 1 SSGAIIYTVELKRYG-GPLGITISGT--EEPFDPIIISSLTKGGLAERTGAIHIGDRILA 57
Query: 91 VNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 130
+N + + EA+ +L+ + L + K D P
Sbjct: 58 INSSSLKGKPLSEAIHLLQ---MAGETVTLKIKKQTDAQP 94
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 81.4 bits (201), Expect = 6e-20
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKG-------GDGGIYVGSIMKGG 74
SS SS + S V + + LGISIVG GI++ +++
Sbjct: 2 SSGSSGPNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDS 61
Query: 75 AVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
++ GD IL+V+ ++ +N S+ EAV ++ P+ +V
Sbjct: 62 PAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNA---GNPVVFIV 106
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 80.9 bits (200), Expect = 8e-20
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSN----KGGDGGIYVGSIMKGGAVA 77
SS SS + + +T+T+ T LGISI G KG D GI++ + + G A
Sbjct: 2 SSGSSGEPARIEEEELTLTILRQT-GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAA 60
Query: 78 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
G + GD +L+VN + + + EAV LR +++ V +
Sbjct: 61 RAG-VRVGDKLLEVNGVALQGAEHHEAVEALR---GAGTAVQMRVWR 103
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 80.1 bits (198), Expect = 1e-19
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGR 81
SS SS + + L+ + LG +IVG + G I+V I+ GG L G
Sbjct: 2 SSGSSGRPGGDAREPRKIILHKGS-TGLGFNIVGGEDGEG---IFVSFILAGGPADLSGE 57
Query: 82 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
+ GD IL VN +N N ++++A L+ + + +V
Sbjct: 58 LRRGDRILSVNGVNLRNATHEQAAAALK---RAGQSVTIVA 95
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 80.1 bits (198), Expect = 2e-19
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 21 TSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDG 80
+ S T + + + ++ + LG+SIVG + I + + + GA A DG
Sbjct: 3 SGSSGPATCPIVPGQEMIIEISKGR-SGLGLSIVGGKD-TPLNAIVIHEVYEEGAAARDG 60
Query: 81 RIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
R+ GD IL+VN ++ N S++EA+ LR Q P ++LVV +
Sbjct: 61 RLWAGDQILEVNGVDLRNSSHEEAITALR---QTPQKVRLVVYR 101
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 79.7 bits (197), Expect = 2e-19
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 30 SSMSLNIITVTLNMDTVNFLGISIVG------QSNKGGDGGIYVGSIMKGGAVALDGRIE 83
S S +T+ L+ D+ LG +I+G + GI+V I+ G A +G ++
Sbjct: 3 SGSSGKSLTLVLHRDS-GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ 61
Query: 84 PGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
D I++VN + ++D+AV + PI + V +
Sbjct: 62 IHDRIIEVNGRDLSRATHDQAVEAFK---TAKEPIVVQVLR 99
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 80.2 bits (198), Expect = 2e-19
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 19 SRTSSFSSITD-------SSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIM 71
S SS + TD + + + + L D N LG+S+ G + I+V I
Sbjct: 2 SSGSSGDAFTDQKIRQRYADLPGELHIIELEKDK-NGLGLSLAGNKD-RSRMSIFVVGIN 59
Query: 72 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
G A DGR+ GD +L++N+ S+ A +++ P +KLV +
Sbjct: 60 PEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIK---TAPSKVKLVFIR 109
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 80.2 bits (198), Expect = 2e-19
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGR 81
SS SS I L+ + LG S+ G ++ + I V + G + +G
Sbjct: 2 SSGSSGATLKQLDGIHVTILHKEEGAGLGFSLAGGAD-LENKVITVHRVFPNGLASQEGT 60
Query: 82 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
I+ G+ +L +N + + ++ +A+ +LR Q P + V+
Sbjct: 61 IQKGNEVLSINGKSLKGTTHHDALAILR---QAREPRQAVI 98
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 78.9 bits (195), Expect = 2e-19
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 33 SLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
SL VT+ LGISI G + I + I KG A + GD IL VN
Sbjct: 2 SLQRRRVTVRKADAGGLGISIKG--GRENKMPILISKIFKGLAADQTEALFVGDAILSVN 59
Query: 93 DINFENMSNDEAVRVLREVVQKPGPIKLVV 122
+ + ++DEAV+ L+ + + L V
Sbjct: 60 GEDLSSATHDEAVQALK---KTGKEVVLEV 86
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 82.1 bits (203), Expect = 2e-19
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 49 LGISIVG--QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVR 106
G I G ++ + + + GG +G I+PGD +L V+ I ++ EA+
Sbjct: 119 FGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMS 178
Query: 107 VLREVVQKPGPIKLVVA 123
+L++ L++
Sbjct: 179 ILKQC---GQEATLLIE 192
Score = 76.3 bits (188), Expect = 3e-17
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
V L LG+++ G DG V ++ +GG A +++ GD I VN IN
Sbjct: 10 VVELMKKEGTTLGLTVSG--GIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLA 67
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVVAK 124
+DE + +L+ + L V
Sbjct: 68 KFRHDEIISLLK---NVGERVVLEVEY 91
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 79.8 bits (197), Expect = 2e-19
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 38 TVTLNMDTVNFLGISIVG---QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
+ + N LGI IVG G+ G Y+ I+ GG+ G++ G +L+ N I
Sbjct: 21 DSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGI 80
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVV 122
+ + +E ++ Q+ G ++ V
Sbjct: 81 PLTSKTYEEVQSIIS---QQSGEAEICV 105
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 79.8 bits (197), Expect = 3e-19
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGR 81
F + S + I L + G ++VG D + + S++ G ALDG+
Sbjct: 5 KPFFTRNPSELKGKFIHTKLRKSS-RGFGFTVVGGDE--PDEFLQIKSLVLDGPAALDGK 61
Query: 82 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
+E GD+I+ VND ++ + V++ + + + L + +
Sbjct: 62 METGDVIVSVNDTCVLGHTHAQVVKIFQS-IPIGASVDLELCR 103
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 81.3 bits (201), Expect = 4e-19
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 31 SMSLNIITVTLNMDTVNFLGISIVGQSNK---GGDGGIYVGSIMKGGAVALDGRIEPGDM 87
S S+ +TL + LG SI G ++ G D I++ I+ GGA A DGR+ D
Sbjct: 1 SGSMEYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 59
Query: 88 ILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEP 141
IL VN+++ +++ AV L+ + ++L V + P K P
Sbjct: 60 ILFVNEVDVREVTHSAAVEALK---EAGSIVRLYVMRRKPPAEKVMEIKLIKGP 110
Score = 79.8 bits (197), Expect = 1e-18
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 49 LGISIVG---QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAV 105
LG SI G + GD IYV I++GGA DGR++ GD IL VN + E++ +++AV
Sbjct: 113 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 172
Query: 106 RVLREVVQKPGPIKLVVAK 124
L+ + L VAK
Sbjct: 173 AALKNT---YDVVYLKVAK 188
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 78.6 bits (194), Expect = 4e-19
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
Query: 28 TDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDM 87
+ S N V L LG+++V + +++ GG G + GD
Sbjct: 2 SSGSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDR 61
Query: 88 ILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125
+ +N + + +RE + + L + C
Sbjct: 62 LTAINGTSLVGLPLAACQAAVRE-TKSQTSVTLSIVHC 98
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 77.8 bits (192), Expect = 7e-19
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 36 IITVTLNMDTVNFLGISIVG------QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMIL 89
+ + + ++ LG SI G + D GI+V + G ++PGD I+
Sbjct: 2 SMEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 59
Query: 90 QVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
Q N +F N+ + +AV +L+ ++L++ +
Sbjct: 60 QANGYSFINIEHGQAVSLLK---TFQNTVELIIVR 91
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 78.3 bits (193), Expect = 9e-19
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 28 TDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDG-----GIYVGSIMKGGAVALDGRI 82
+ SS SL V ++ G I+ N+ G +G I+ G ++
Sbjct: 3 SGSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKL 62
Query: 83 EPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
+ GD IL VN + NM + + V+++++ + L +
Sbjct: 63 KVGDRILAVNGQSIINMPHADIVKLIKDA---GLSVTLRIIP 101
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 78.2 bits (193), Expect = 9e-19
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 23 SFSSITDSSMSLNIITVTLNMDTVNFLGISIVG----QSNKGGDGGIYVGSIMKGGAVAL 78
S S + TVTL D+ GI++ G + G+ I + ++ GG
Sbjct: 2 SSGSSGMEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA-- 59
Query: 79 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
DG ++ D ++ VN E++ + AV+ LR + +VV
Sbjct: 60 DGLLQENDRVVMVNGTPMEDVLHSFAVQQLR---KSGKIAAIVV 100
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 79.9 bits (197), Expect = 1e-18
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 11/122 (9%)
Query: 17 ALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAV 76
+ + + L V L LG+S+ + G + +++G
Sbjct: 95 TYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPN-----EIGCTIADLIQGQYP 149
Query: 77 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTI 136
+D +++ GD+I + N E + + + G + + V + P P
Sbjct: 150 EIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA---NGKVSMEVTR---PKPTLRTEA 203
Query: 137 PR 138
P+
Sbjct: 204 PK 205
Score = 66.8 bits (163), Expect = 9e-14
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN--D 93
I + L ++ +G+ + G N G + + G VA D R++ D I +N
Sbjct: 19 KILIELKVEKKP-MGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTP 77
Query: 94 INFENMSNDEAVRVLREVVQKP 115
I+ +M+ + ++ +K
Sbjct: 78 IHVGSMTTLKVHQLFHTTYEKA 99
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 77.5 bits (191), Expect = 2e-18
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG +IVG + G I++ I+ GG L G + GD IL VN ++ N S+++A L
Sbjct: 27 LGFNIVGGEDGEG---IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 83
Query: 109 REVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEPVRPIDP 147
+ + ++ P+ Y R E +D
Sbjct: 84 K---NAGQTVTIIAQY----KPEEY---SRFEANSRVDS 112
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 76.9 bits (190), Expect = 2e-18
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 33 SLNIITVTLNMDTVNFLGISIVG----QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMI 88
S+ +T+T+ T LGISI G KG D GI++ + + G A G + GD +
Sbjct: 1 SMEELTLTILRQT-GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKL 58
Query: 89 LQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
L+VN + + + EAV LR +++ V
Sbjct: 59 LEVNGVALQGAEHHEAVEALR---GAGTAVQMRV 89
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 75.9 bits (187), Expect = 4e-18
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 38 TVTLNMDTVNFLGISIVG------QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQV 91
+ + ++ LG SI G + D GI+V + G ++PGD I+Q
Sbjct: 12 EIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQA 69
Query: 92 NDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
N +F N+ + +AV +L+ ++L++ +
Sbjct: 70 NGYSFINIEHGQAVSLLK---TFQNTVELIIVR 99
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 76.8 bits (189), Expect = 4e-18
Identities = 20/133 (15%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 2 SRRRRPQRRRRHRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGG 61
S + ++ + + A + + +I L + LG+ ++
Sbjct: 5 SSGSKNEKEQLSKAKASVSSLN-----------KVIQTKLTVGN-LGLGLVVIQ-----N 47
Query: 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG-PIKL 120
+ + ++ GA A DG ++PGD+++ V N + E +++L+ + G +++
Sbjct: 48 GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI--TIGTVLQI 105
Query: 121 VVAKCWDPNPKGY 133
+ + P+ +
Sbjct: 106 KAYRGFLEIPQEW 118
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 75.0 bits (185), Expect = 6e-18
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDIN 95
+I V L N + S I+V + + G DG + GD+IL++N
Sbjct: 1 MIGVLLMKSRAN-EEYGLRLGS------QIFVKEMTRTGLATKDGNLHEGDIILKINGTV 53
Query: 96 FENMSNDEAVRVLREVVQKPGPIKLVVAK 124
ENMS +A +++ + G ++LVV +
Sbjct: 54 TENMSLTDARKLIE---KSRGKLQLVVLR 79
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 76.0 bits (187), Expect = 7e-18
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 19 SRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVAL 78
S +S D V + + LGISIV G GGIYV + G
Sbjct: 3 SGSSGGERRKDRPYVEEPRHVKVQKGS-EPLGISIVS----GEKGGIYVSKVTVGSIAHQ 57
Query: 79 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
G +E GD +L+ N IN + + +A ++ Q+ I ++
Sbjct: 58 AG-LEYGDQLLEFNGINLRSATEQQARLIIG---QQCDTITILA 97
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 75.4 bits (186), Expect = 7e-18
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG +IVG G I++ I+ GG L G + GD IL VN ++ N S+++A L
Sbjct: 24 LGFNIVGGEXGEG---IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 80
Query: 109 REVVQKPGPIKLVVA 123
+ + ++
Sbjct: 81 K---NAGQTVTIIAQ 92
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 74.8 bits (184), Expect = 2e-17
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDIN 95
+ V + + LGIS+ S + I + I V G + PGD IL ++ +
Sbjct: 16 PLMVEIVKTPGSALGISLTTTSLRN-KSVITIDRIKPASVVDRSGALHPGDHILSIDGTS 74
Query: 96 FENMSNDEAVRVLREVVQKPGPIKLVV 122
E+ S EA ++L + ++L +
Sbjct: 75 MEHCSLLEATKLLASI---SEKVRLEI 98
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 73.1 bits (180), Expect = 3e-17
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 50 GISIVGQSNKGGDG-------GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSND 102
G + ++ + I+V I + A DG I+ GD++L++N ENMS
Sbjct: 1 GSKVTLVKSRKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLT 60
Query: 103 EAVRVLREVVQKPGPIKLVVAK 124
+A ++ + G +K+VV +
Sbjct: 61 DAKTLIE---RSKGKLKMVVQR 79
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 78.8 bits (193), Expect = 5e-17
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 1 MSRRRRPQRRRRHRPPALSRTSSFSS---ITDSSMSLNIITVTLNMDTVNFLGISIVG-- 55
+ + + PP + T + + + + + +TL LG SI G
Sbjct: 22 LKHSPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNSG-LGFSIAGGT 80
Query: 56 -QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114
+ G D I++ I+ GGA A DGR+ D IL VN+++ +++ AV L+ +
Sbjct: 81 DNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK---EA 137
Query: 115 PGPIKLVV 122
++L V
Sbjct: 138 GSIVRLYV 145
Score = 71.1 bits (173), Expect = 2e-14
Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 7/135 (5%)
Query: 7 PQRRRRHRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIY 66
P + + + + + ++ + LG +IVG + G I+
Sbjct: 279 YPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTG-LGFNIVGGEDGEG---IF 334
Query: 67 VGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 126
+ I+ GG L G + GD IL VN ++ N S+++A L+ + ++
Sbjct: 335 ISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA---GQTVTIIAQYKP 391
Query: 127 DPNPKGYFTIPRTEP 141
+ + I
Sbjct: 392 EEYSRFEAKIHDLRE 406
Score = 53.0 bits (126), Expect = 3e-08
Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 4/140 (2%)
Query: 51 ISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110
VG + GD IYV I++GGA DGR++ GD IL VN + E++ +++AV L+
Sbjct: 172 AGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK- 230
Query: 111 VVQKPGPIKLVVAKC-WDPNPKGYFTIPRTEPVRPIDPGAWVAHTAAIRGDGFPLRPPSV 169
+ L VAK Y T + + P S
Sbjct: 231 --NTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSP 288
Query: 170 STLTSTSSSLTSSIAETEKA 189
+ + L +
Sbjct: 289 RRYSPVAKDLLGEEDIPREP 308
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 73.3 bits (180), Expect = 6e-17
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGD--GGIYVGSIMKGGAVALD 79
SS SS + V L D V GI + G + I
Sbjct: 2 SSGSSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERC 61
Query: 80 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
G ++ GD ++ +N I E+ + +EA ++LR+ K+ +
Sbjct: 62 GVLQIGDRVMAINGIPTEDSTFEEANQLLRDS---SITSKVTL 101
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 73.3 bits (180), Expect = 6e-17
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGR 81
SS SS + + V +++ LG SI GI++ + G A G
Sbjct: 2 SSGSSGSPGNRENKEKKVFISLVGSRGLGCSISS--GPIQKPGIFISHVKPGSLSAEVG- 58
Query: 82 IEPGDMILQVNDINFENMSNDEAVRVLR 109
+E GD I++VN ++F N+ + EAV VL+
Sbjct: 59 LEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 72.4 bits (178), Expect = 8e-17
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 36 IITVTLNMDTVNF-LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
VTL N G+ + I+V I + A DG I+ GD++L++N
Sbjct: 3 PTKVTLVKSAKNEEYGLRLAS--------HIFVKEISQDSLAARDGNIQEGDVVLKINGT 54
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
ENMS +A ++ + G +K+VV +
Sbjct: 55 VTENMSLTDAKTLIE---RSKGKLKMVVQR 81
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 72.5 bits (178), Expect = 2e-16
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
+G+ + G G D GI+V +++ A +G +E GD IL+VN+++F N+ +EAV L
Sbjct: 41 VGLRLAG----GNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFL 95
Query: 109 REVVQKPGPIKLVVAK 124
+ + K + ++ K
Sbjct: 96 LD-LPKGEEVTILAQK 110
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 71.3 bits (175), Expect = 2e-16
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG++I G G ++ I GG + I GD I +N N + + + L
Sbjct: 18 LGLTITD----NGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKL 73
Query: 109 REV 111
+E+
Sbjct: 74 KEL 76
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 71.6 bits (176), Expect = 2e-16
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGR 81
SS SS + VTL LG +I G K GI++ ++ G
Sbjct: 2 SSGSSGNNELTQFLPRIVTLKKPPGAQLGFNIRGG--KASQLGIFISKVIPDSDAHRAG- 58
Query: 82 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
++ GD +L VND++F+++ + +AV +L+ I + V
Sbjct: 59 LQEGDQVLAVNDVDFQDIEHSKAVEILK----TAREISMRV 95
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 71.2 bits (175), Expect = 2e-16
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 28 TDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDM 87
+ SS S I +V + LG S+ G S G GI+V + +G + G + GD
Sbjct: 3 SGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGL--GIFVSKVEEGSSAERAG-LCVGDK 59
Query: 88 ILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
I +VN ++ E+ + AV+VL + ++V
Sbjct: 60 ITEVNGLSLESTTMGSAVKVLT----SSSRLHMMV 90
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 71.4 bits (175), Expect = 4e-16
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGG-AVALDG 80
SS SS N++ + + D G ++ G + V + G A
Sbjct: 2 SSGSSGNGGIPHDNLVLIRMKPDENGRFGFNVKG--GYDQKMPVIVSRVAPGTPADLCVP 59
Query: 81 RIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP-GPIKLVVA 123
R+ GD ++ +N + ++D+ V ++ ++ G + L+V
Sbjct: 60 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 103
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 70.9 bits (174), Expect = 4e-16
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
+ V + LG ++ + + + I+KGGA G + GD +L++N I
Sbjct: 25 TVKIVRIEKARDIPLGATV-----RNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGI 79
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 130
+E +L ++ G + V+ P+
Sbjct: 80 EIRGKDVNEVFDLLSDM---HGTLTFVLIPSSGPSS 112
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 72.3 bits (177), Expect = 9e-16
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 5 RRPQRRRRHRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGG 64
R RP + S + V L+ LG+S+ G G G
Sbjct: 54 SRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGC--G 111
Query: 65 IYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 109
+++ ++KGG G ++ GD I+++N + + +++E + ++R
Sbjct: 112 LFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIR 155
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 70.3 bits (172), Expect = 1e-15
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 13/124 (10%)
Query: 9 RRRRHRPPALSR--TSSFSSITDSSMSLNIITVTLN-MDTVNFLGISIVGQSNKGG---- 61
R++ H ++ + S I + V L T LG I S+
Sbjct: 1 RKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHG 60
Query: 62 ---DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPI 118
GI++ ++ GG G + D +L+VN I S D+ ++ +
Sbjct: 61 LEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI---ANSRNL 117
Query: 119 KLVV 122
+ V
Sbjct: 118 IITV 121
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 69.5 bits (170), Expect = 1e-15
Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVAL-DGRIEPGDMILQVND 93
N++ + + D G ++ G + V + G L R+ GD ++ +N
Sbjct: 17 NLVLIRMKPDENGRFGFNVKG--GYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 74
Query: 94 INFENMSNDEAVRVLREVVQKP-GPIKLVV 122
+ ++D+ V ++ ++ G + L+V
Sbjct: 75 RDIAEHTHDQVVLFIKASCERHSGELMLLV 104
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR
{Mus musculus} SCOP: a.4.5.31
Length = 105
Score = 69.5 bits (170), Expect = 1e-15
Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 180 TSSIAETEKAFEELSLTINTDMATIVRVMARPESGLEIRDRMWLKITIPNAFIGK 234
TSS+ + EE LT+ +DM+ IVRVM P+SGLEIRDRMWLKITI NA IG
Sbjct: 1 TSSVPGAPQ-LEEAPLTVKSDMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGA 54
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 68.5 bits (168), Expect = 2e-15
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 30 SSMSLNIITVTLNMDTVNF-LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMI 88
S S + V+L + LG SI G S G GIYV + G +G + GD I
Sbjct: 3 SGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGV--GIYVSLVEPGSLAEKEG-LRVGDQI 59
Query: 89 LQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 131
L+VND + +++ EAV+ L+ + V + P
Sbjct: 60 LRVNDKSLARVTHAEAVKALK---GSKKLVLSVYSAGRISGPS 99
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 72.5 bits (177), Expect = 2e-15
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 2/109 (1%)
Query: 2 SRRRRPQRRRRHRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGG 61
+ + + + ++ L VT+ LGISI G +
Sbjct: 44 ADGEPGPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKG--GREN 101
Query: 62 DGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110
I + I KG A + GD IL VN + + ++DEAV+ L++
Sbjct: 102 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 150
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 68.5 bits (168), Expect = 3e-15
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 30 SSMSLNIITVTLNMDTVNF-LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMI 88
S S TV ++ DT+ G I + V ++ GG+ G++ PGD I
Sbjct: 3 SGSSGVRHTVKIDKDTLLQDYGFHI------SESLPLTVVAVTAGGSA--HGKLFPGDQI 54
Query: 89 LQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 131
LQ+N+ E++S + AV +LRE + + V +C P
Sbjct: 55 LQMNNEPAEDLSWERAVDILREA---EDSLSITVVRCTSSGPS 94
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 67.0 bits (164), Expect = 7e-15
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 30 SSMSLNIITVTLNMDTVNF-LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMI 88
S + + VTL D+ G S+ + G+YV +I G L G ++P D +
Sbjct: 1 SPTPVELHKVTLYKDSGMEDFGFSVADGL---LEKGVYVKNIRPAGPGDLGG-LKPYDRL 56
Query: 89 LQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
LQVN + + V ++ + + LV+++
Sbjct: 57 LQVNHVRTRDFDCCLVVPLIA---ESGNKLDLVISR 89
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 67.0 bits (164), Expect = 9e-15
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
+ + T +GI + V I+ GG + G + GD IL++N
Sbjct: 12 MVRLIQFEKVTEEPMGICLKL----NEKQSCTVARILHGGMIHRQGSLHVGDEILEINGT 67
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVVA 123
N N S D+ + ++E G I L V
Sbjct: 68 NVTNHSVDQLQKAMKET---KGMISLKVI 93
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 66.2 bits (162), Expect = 1e-14
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG +I G I V IM+GGA G I GD + +VN I E+ +E +++L
Sbjct: 17 LGATIKKDEQTGA---IIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQIL 73
Query: 109 REVVQKPGPIKLVVAKCWDPNP 130
+ G I +
Sbjct: 74 AQS---QGAITFKIIPGSKEET 92
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 66.6 bits (162), Expect = 4e-14
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 10 RRRHRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKG--------- 60
H + + ++ SM + L LG SI G ++
Sbjct: 3 HHHHHSSGVDLGTE--NLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSED 60
Query: 61 -GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIK 119
D GIYV + +GG + G ++ GD I+QVN + +++D+A + L + + ++
Sbjct: 61 KTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTK--RSEEVVR 117
Query: 120 LVVAK 124
L+V +
Sbjct: 118 LLVTR 122
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 64.7 bits (158), Expect = 5e-14
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
V +T +GI++ V IM GG + G + GD I ++N I+
Sbjct: 4 LVQFQKNTDEPMGITLKM----NELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVVA 123
N + ++ ++LRE+ G I +
Sbjct: 60 NQTVEQLQKMLREM---RGSITFKIV 82
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 66.0 bits (161), Expect = 9e-14
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
V L D +G+ + D GI+V + +L G + GD +LQ+N N
Sbjct: 7 EVILCKDQDGKIGLRLKS-----IDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCA 60
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVV 122
S+D+A +VL++ I + +
Sbjct: 61 GWSSDKAHKVLKQ--AFGEKITMTI 83
Score = 38.7 bits (90), Expect = 6e-04
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
+ SI+K + A +G + I ++N N + + + +L + + +
Sbjct: 108 NGKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILS---TSGTVVTITI 162
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin
adaptor AP-2 complex...; dishevelled, frizzled
internalization; 3.50A {Mus musculus}
Length = 385
Score = 67.7 bits (164), Expect = 3e-13
Identities = 27/40 (67%), Positives = 36/40 (90%)
Query: 194 SLTINTDMATIVRVMARPESGLEIRDRMWLKITIPNAFIG 233
+L+++ DMA++ + MA PESGLE+RDRMWLKITIPNAF+G
Sbjct: 2 ALSVHMDMASVTKAMAAPESGLEVRDRMWLKITIPNAFLG 41
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 62.4 bits (152), Expect = 3e-13
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 37 ITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINF 96
I++ G +I GI+V S+ G A +++ D I+ +N+ F
Sbjct: 7 ISINQTPGKSLDFGFTIKW-----DIPGIFVASVEAGSP-AEFSQLQVDDEIIAINNTKF 60
Query: 97 ENMSNDEAVRVLREVVQKPGPIKLVV 122
+ E + + Q+ G + + V
Sbjct: 61 SYNDSKEWEEAMAK-AQETGHLVMDV 85
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 63.3 bits (154), Expect = 4e-13
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
V L + LG++I G + G GIY+ + G G ++ GD IL+VN +F
Sbjct: 23 KVNLVLGDGRSLGLTIRGGAEYGL--GIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFL 79
Query: 98 NMSNDEAVRVLR 109
N+ +DEAVR+L+
Sbjct: 80 NILHDEAVRLLK 91
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 66.9 bits (162), Expect = 4e-13
Identities = 13/78 (16%), Positives = 32/78 (41%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
LG+ +V + + ++M GG A G++ GD I+ +N + + ++
Sbjct: 218 LGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGII 277
Query: 109 REVVQKPGPIKLVVAKCW 126
+ + + +V+
Sbjct: 278 KGLKNQTQVKLNIVSCPP 295
Score = 52.7 bits (125), Expect = 3e-08
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 37 ITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINF 96
+ D LG S+ + S+M+GG G + G I+++N +
Sbjct: 298 TVLIKRPDLKYQLGFSV---------QNGIICSLMRGGIAERGG-VRVGHRIIEINGQSV 347
Query: 97 ENMSNDEAVRVLREVVQKPGPIKLVVA 123
++++ V+ L G I +
Sbjct: 348 VATAHEKIVQALSNS---VGEIHMKTM 371
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 59.2 bits (144), Expect = 5e-12
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 33 SLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
S+ +ITV + + F G +I G GG V I+ ++ GD+I++VN
Sbjct: 1 SMELITVHIVKGPMGF-GFTIADSP---GGGGQRVKQIVDSPR---SRGLKEGDLIVEVN 53
Query: 93 DINFENMSNDEAVRVLREVVQKPGPIKLVV 122
N + +++++ V +L E + + L+V
Sbjct: 54 KKNVQALTHNQVVDMLVESPKG-SEVTLLV 82
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 59.7 bits (145), Expect = 5e-12
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G S+ G G+Y+ I G G + D +++VN N E+ S++E V +
Sbjct: 21 YGFSLKTVQ---GKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKV 76
Query: 109 REVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEP 141
+ + + ++ D ++ P
Sbjct: 77 K---KSGSRVMFLLV---DKETDKRHVEQKSGP 103
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 58.8 bits (143), Expect = 7e-12
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G + G+ G G Y+ + G A + GD +++VN N E ++ + V +
Sbjct: 16 YGFHLHGEK---GKLGQYIRLVEPGSP-AEKAGLLAGDRLVEVNGENVEKETHQQVVSRI 71
Query: 109 REVVQKPGPIKLVVAK 124
R ++L+V
Sbjct: 72 R---AALNAVRLLVVD 84
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 57.7 bits (140), Expect = 2e-11
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 31 SMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQ 90
SMS ++++ G + G K + + + S+ GG A + GD++L
Sbjct: 1 SMS----NYSVSLVGPAPWGFRLQGG--KDFNMPLTISSLKDGGK-AAQANVRIGDVVLS 53
Query: 91 VNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
++ IN + M++ EA ++ G + + +
Sbjct: 54 IDGINAQGMTHLEAQNKIK---GCTGSLNMTL 82
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 57.3 bits (139), Expect = 3e-11
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G + + G G ++ + G G ++ GD ++ V + E + ++E V +
Sbjct: 16 FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRI 74
Query: 109 REVVQKPGPIKLVVA 123
+ + + L V
Sbjct: 75 Q---GQGSCVSLTVV 86
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 56.5 bits (137), Expect = 5e-11
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 33 SLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
S++ V L G + G K + + + + GG A G + GD +L ++
Sbjct: 1 SMDSFKVVLEGPAP--WGFRLQGG--KDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSID 55
Query: 93 DINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125
N ++++ EA +R + L +++
Sbjct: 56 GENAGSLTHIEAQNKIR---ACGERLSLGLSRA 85
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 57.1 bits (138), Expect = 5e-11
Identities = 12/90 (13%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
++ + + G ++ G + + V + + ++ G GD I+ + ++ +
Sbjct: 26 SIRFTAEEGDL-GFTLRG------NAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCK 77
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVVAKCWD 127
++ E +++L+ I++ V D
Sbjct: 78 WLTLSEVMKLLKSF--GEDEIEMKVVSLLD 105
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 56.6 bits (137), Expect = 5e-11
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 33 SLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
S+ + L G +VG + + + + G A + GD+I ++
Sbjct: 1 SMTTQQIDLQGPGP--WGFRLVGGKDFEQ--PLAISRVTPGSK-AALANLCIGDVITAID 55
Query: 93 DINFENMSNDEAVRVLREVVQKPGPIKLVVAK 124
N NM++ EA ++ + L VA+
Sbjct: 56 GENTSNMTHLEAQNRIK---GCTDNLTLTVAR 84
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 57.0 bits (138), Expect = 6e-11
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 49 LGISIVGQSNKGGDG----------GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFEN 98
G ++ GQ ++GG +V +++ GGA G + GD IL+VN +N E
Sbjct: 19 YGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEG 77
Query: 99 MSNDEAVRVLREVVQKPGPIKLVV 122
++ + V ++R + L V
Sbjct: 78 ATHKQVVDLIR---AGEKELILTV 98
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 60.2 bits (145), Expect = 8e-11
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
+G+ + G G D GI+V +++ A +G +E GD IL+VN+++F N+ +EAV L
Sbjct: 21 VGLRLAG----GNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFL 75
Query: 109 RE 110
+
Sbjct: 76 LD 77
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 55.9 bits (135), Expect = 1e-10
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 35 NIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
+ V + LG++ + G + + I+ GG VA G + GD+I +VN
Sbjct: 6 SGRMVGIRKTAGEHLGVTF-----RVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQ 60
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVVAKC 125
+ +LR G + L +
Sbjct: 61 PVGS-DPRALQELLR---NASGSVILKILSG 87
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 55.5 bits (134), Expect = 1e-10
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G +I G V I+ + GD+I+++N N +N+S+ E V +L
Sbjct: 23 FGFTIAD-----SPTGQRVKQILDIQGCP---GLCEGDLIVEINQQNVQNLSHTEVVDIL 74
Query: 109 REVVQKPGPIKLVV 122
++ L++
Sbjct: 75 KD-CPIGSETSLII 87
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 55.3 bits (134), Expect = 2e-10
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G +VG + + + + G AL + PGD+I +N + E M++ EA +
Sbjct: 20 WGFRLVGGRDFSA--PLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRI 76
Query: 109 REVVQKPGPIKLVV 122
+ + L V
Sbjct: 77 K---GCHDHLTLSV 87
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 55.1 bits (133), Expect = 2e-10
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 22 SSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGR 81
SS SS + + +T+ F G +I D + V ++ GG G
Sbjct: 2 SSGSSGEGDPENGEKLQITIRRGKDGF-GFTICC------DSPVRVQAVDSGGPAERAG- 53
Query: 82 IEPGDMILQVNDINFENMSNDEAVRVLR--------EVVQKPGP 117
++ D +LQ+N+ E+ E +R V + GP
Sbjct: 54 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGP 97
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 55.0 bits (133), Expect = 3e-10
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
+T+++ G I G + I V + + G + PGD+I+ +N + E
Sbjct: 7 GLTVDVAGPAPWGFRISGGRDFHT--PIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAE 63
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 130
NM + EA +R Q P++L + + P+
Sbjct: 64 NMLHAEAQSKIR---QSASPLRLQLDRSSGPSS 93
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 54.6 bits (132), Expect = 3e-10
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
L + G ++ G Y+ S+ G A G + D +++VN N E
Sbjct: 7 LCHLRKGPQGY-GFNLHSDK---SRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVE 61
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVVAK 124
+ + E V ++ + +L+V
Sbjct: 62 GLRHAEVVASIK---AREDEARLLVVG 85
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 54.8 bits (132), Expect = 4e-10
Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 36 IITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDIN 95
++T+ L F G +I G V I+ ++ GD+I ++ N
Sbjct: 13 LVTIPLIKGPKGF-GFAIAD-----SPTGQKVKMILDSQ---WCQGLQKGDIIKEIYHQN 63
Query: 96 FENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEP 141
+N+++ + V VL++ + L++ + P+P +
Sbjct: 64 VQNLTHLQVVEVLKQFPVG-ADVPLLILRGGPPSPTKTAKMGSGSG 108
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 54.7 bits (132), Expect = 4e-10
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G ++ +K G ++ S+ G + D I++VN + E + + V +
Sbjct: 22 YGFNLHSDKSKPG---QFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAI 77
Query: 109 REVVQKPGPIKLVVAKCWDPNPKGYF 134
R KL+V D +F
Sbjct: 78 R---AGGDETKLLVV---DRETDEFF 97
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 54.2 bits (131), Expect = 4e-10
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G + G + + + I G A ++ GD+++ ++ +N + M++ EA +
Sbjct: 13 WGFRLQGGKDFNM--PLTISRITPGSK-AAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKI 69
Query: 109 REVVQKPGPIKLVV 122
+ + L +
Sbjct: 70 K---SASYNLSLTL 80
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 58.4 bits (140), Expect = 4e-10
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
+G+ + G G D GI+V +++ A +G +E GD IL+VN+++F N+ +EAV L
Sbjct: 13 VGLRLAG----GNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFL 67
Query: 109 RE 110
+
Sbjct: 68 LD 69
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 54.2 bits (131), Expect = 4e-10
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G I G + I V + + G A D + PGD+I+ +N + E M + EA +
Sbjct: 14 WGFRITGG--RDFHTPIMVTKVAERGK-AKDADLRPGDIIVAINGESAEGMLHAEAQSKI 70
Query: 109 REVVQKPGPIKLVVAK 124
R Q P P++L + +
Sbjct: 71 R---QSPSPLRLQLDR 83
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 53.8 bits (130), Expect = 5e-10
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
L + G + G G ++ + KGG L G +E D+I++VN +N
Sbjct: 6 LCRLAKGENGY-GFHLNAIR---GLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVL 60
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVVA 123
+ ++ V ++ + L+V
Sbjct: 61 DEPYEKVVDRIQ---SSGKNVTLLVC 83
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 56.7 bits (136), Expect = 5e-10
Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 19/144 (13%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G ++ +K G ++ S+ G + D I++VN + E + + V +
Sbjct: 22 YGFNLHSDKSKPG---QFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAI 77
Query: 109 REVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEPVR---------PIDPGAWVAHTAAIRG 159
R KL+V D +F R P + P G +
Sbjct: 78 R---AGGDETKLLV---VDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREAL 131
Query: 160 DGFPLRPPSVSTLTSTSSSLTSSI 183
L P + + S SS + +
Sbjct: 132 AEAALESPRPALVRSASSDTSEEL 155
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 53.4 bits (129), Expect = 6e-10
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
+V + + G ++ G + +M+G G + GD IL VN+IN +
Sbjct: 5 SVEVARGRAGY-GFTLSG------QAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVK 56
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVVA 123
S+++ V+++ + G + +V+A
Sbjct: 57 KASHEDVVKLIG---KCSGVLHMVIA 79
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 53.7 bits (129), Expect = 1e-09
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G ++ +K G ++ S+ G + D I++VN + E + + V +
Sbjct: 22 YGFNLHSDKSKPG---QFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAI 77
Query: 109 REVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEPVRP 144
R KL+V D +F R P +
Sbjct: 78 R---AGGDETKLLV---VDRETDEFFKKCRVIPSQE 107
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 52.8 bits (127), Expect = 2e-09
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G + G + + + S+ GG A + GD++L ++ I+ + M++ EA +
Sbjct: 17 WGFRLQGGKDFNM--PLTISSLKDGGK-ASQAHVRIGDVVLSIDGISAQGMTHLEAQNKI 73
Query: 109 REVVQKPGPIKLVVAKCWDPNPK 131
+ G + + + +
Sbjct: 74 K---ACTGSLNMTLQRASAAAKS 93
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 52.3 bits (126), Expect = 2e-09
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G ++ G + V I GG AL ++ GD ++ +N EA+ ++
Sbjct: 23 WGFTLKGG--LEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILI 79
Query: 109 REVVQKPGPIKLVV 122
+ +KL+V
Sbjct: 80 K---GSFRILKLIV 90
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 52.4 bits (126), Expect = 3e-09
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 37 ITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINF 96
V L G + G + + + I G A + PGD+IL ++
Sbjct: 7 GNVVLPGPAP--WGFRLSG--GIDFNQPLVITRITPGSK-AAAANLCPGDVILAIDGFGT 61
Query: 97 ENMSNDEAVRVLREVVQKPGPIKLVV 122
E+M++ +A ++ + L +
Sbjct: 62 ESMTHADAQDRIK---AASYQLCLKI 84
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 52.0 bits (125), Expect = 3e-09
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 33 SLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
S+ +T+ F G +I D + V ++ GG G ++ D +LQ+N
Sbjct: 1 SMRYRQITIPRGKDGF-GFTI------CCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLN 52
Query: 93 DINFENMSNDEAVRVLREVVQKPGPIKLVVA 123
+ E+ E +R P I L+V
Sbjct: 53 ERPVEHWKCVELAHEIR---SCPSEIILLVW 80
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 51.1 bits (123), Expect = 6e-09
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
V + + + G + + G + I G G ++ D+++ VN + E
Sbjct: 8 VVVIKKGSNGY-GFYLRAGPEQKG---QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVE 62
Query: 98 NMSNDEAVRVLREVVQKPGPIKLVVA 123
+ +D V ++R + L+V
Sbjct: 63 ALDHDGVVEMIR---KGGDQTTLLVL 85
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 50.4 bits (121), Expect = 8e-09
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 33 SLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVN 92
+++ T+T++ D+ +G K G + SI+K + A +G + I ++N
Sbjct: 2 AMDPRTITMHKDSTGHVGFIF-----KNG----KITSIVKDSSAARNG-LLTEHNICEIN 51
Query: 93 DINFENMSNDEAVRVLREVVQKPGPIKLVV 122
N + + + +L + + +
Sbjct: 52 GQNVIGLKDSQIADILS---TSGTVVTITI 78
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 52.6 bits (125), Expect = 1e-08
Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 15/141 (10%)
Query: 49 LGISIVG------QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSND 102
LG SI G + D GI+V + G ++PGD I+Q N +F N+ +
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHG 61
Query: 103 EAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEPVRPIDPGAWVAHTAAIRGDGF 162
+AV +L+ ++L++ + V V+
Sbjct: 62 QAVSLLK---TFQNTVELIIVR----EVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVA 114
Query: 163 PLRPPSVSTLTSTSSSLTSSI 183
+ + ++ ++
Sbjct: 115 ATPTSLLISWDASYYGVSYYR 135
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 50.2 bits (120), Expect = 1e-08
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDG-----GIYVGSIMKGGAVALDGRIEPGDMILQVN 92
VT+ G I + + + I + G ++ GD++ +N
Sbjct: 18 LVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANIN 76
Query: 93 DINFENMSNDEAVRVLRE 110
++ E + + V ++R
Sbjct: 77 GVSTEGFTYKQVVDLIRS 94
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 50.0 bits (120), Expect = 2e-08
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFE 97
V + D F G ++ GD + V S+ GGA G ++ GD I++VN
Sbjct: 11 CVIIQKDQHGF-GFTV------SGDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVT 62
Query: 98 NMSNDEAVRVLR 109
N S+ E V++++
Sbjct: 63 NSSHLEVVKLIK 74
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 50.1 bits (120), Expect = 2e-08
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDG-----GIYVGSIMKGGAVALDGRIEPGDMILQVN 92
+TL G I + +V + + L G + PGD I VN
Sbjct: 7 VLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVN 65
Query: 93 DINFENMSNDEAVRVLRE 110
+N E + + E V +++
Sbjct: 66 GLNVEGIRHREIVDIIKA 83
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 49.3 bits (118), Expect = 3e-08
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G + + G + I G G ++ D+++ VN + E + +D V ++
Sbjct: 19 YGFYLRAGPEQKG---QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMI 74
Query: 109 REVVQKPGPIKLVVA 123
R + L+V
Sbjct: 75 R---KGGDQTTLLVL 86
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 48.6 bits (116), Expect = 5e-08
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDG-----GIYVGSIMKGGAVALDGRIEPGDMILQVN 92
+ ++ + G S+ GD V S+ G A + + GD+I +N
Sbjct: 5 PIVIHSSGKKY-GFSLRAIRVYMGDSDVYTVHHVVWSVEDGSP-AQEAGLRAGDLITHIN 62
Query: 93 DINFENMSNDEAVRVLRE 110
+ + + + V +L +
Sbjct: 63 GESVLGLVHMDVVELLLK 80
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 47.8 bits (114), Expect = 1e-07
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 30 SSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMIL 89
+M + D LG S+ + S+M+GG G + G I+
Sbjct: 7 ETMGNVTTVLIRRPDLRYQLGFSVQNG---------IICSLMRGGIAERGG-VRVGHRII 56
Query: 90 QVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
++N + +++ V +L G I +
Sbjct: 57 EINGQSVVATPHEKIVHILS---NAVGEIHMKT 86
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 48.2 bits (115), Expect = 1e-07
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 25 SSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEP 84
S + + + N L+ G + + + G + I +G G +
Sbjct: 3 SGSSGMASTFNPRECKLSKQEGQNYGFFLRIEKDTDG---HLIRVIEEGSPAEKAG-LLD 58
Query: 85 GDMILQVNDINFENMSNDEAVRVLRE 110
GD +L++N + + + + V ++R+
Sbjct: 59 GDRVLRINGVFVDKEEHAQVVELVRK 84
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 47.9 bits (114), Expect = 1e-07
Identities = 11/61 (18%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 61 GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKL 120
G+ + V + + +L G + GD I+ + ++ + ++ E +++L+ + +K+
Sbjct: 34 GNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKV 92
Query: 121 V 121
V
Sbjct: 93 V 93
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 47.0 bits (112), Expect = 2e-07
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G + + + G + I +G G + GD +L++N + + + + V ++
Sbjct: 15 YGFFLRIEKDTDG---HLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELV 70
Query: 109 RE 110
R+
Sbjct: 71 RK 72
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 47.2 bits (112), Expect = 3e-07
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 55 GQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 114
++ I+V + +GG G + GD I++VN + + + + +++
Sbjct: 53 QRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQ---NS 108
Query: 115 PGPIKLVV 122
++L V
Sbjct: 109 DTTLELSV 116
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 46.1 bits (109), Expect = 7e-07
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 16/113 (14%)
Query: 8 QRRRRHRPPALSRTSSFSSITDSSMSLNIITVTLNMDTVNFLGISIVGQSNKGGDG---- 63
H L S S + TV L G + G +
Sbjct: 5 HHHHHHSQDPLVPRGS-----GSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTP 59
Query: 64 ------GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110
Y+ S+ +GG G + GD +++VN N + + + V ++R+
Sbjct: 60 TPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 111
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 45.2 bits (107), Expect = 9e-07
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 14/95 (14%)
Query: 38 TVTLNMDTVNFLGISIVGQSNKGGDG----------GIYVGSIMKGGAVALDGRIEPGDM 87
TV L G + G + Y+ S+ +GG G + GD
Sbjct: 10 TVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDF 68
Query: 88 ILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
+++VN N + + + V ++R Q + + V
Sbjct: 69 LIEVNGQNVVKVGHRQVVNMIR---QGGNTLMVKV 100
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 43.9 bits (103), Expect = 4e-06
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 22 SSFSSITDSSMSLNIITVTLNMD--TVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALD 79
SS SS ++ + + G S+ G +YV S+ + G +
Sbjct: 2 SSGSSGEIEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDG-IRRLYVNSVKETGLASKK 60
Query: 80 GRIEPGDMILQVNDINFENMSNDEAVRVLRE 110
G ++ GD IL++N+ + +++ L +
Sbjct: 61 G-LKAGDEILEINNRAADALNSSMLKDFLSQ 90
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 42.6 bits (100), Expect = 6e-06
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
G S+ G +YV S+ + G + G ++ GD IL++N+ + +++ L
Sbjct: 22 YGFSLSSVEEDGI-RRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFL 79
Query: 109 RE 110
+
Sbjct: 80 SQ 81
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Mus musculus} SCOP:
a.4.5.31 PDB: 1w4m_A
Length = 109
Score = 42.3 bits (99), Expect = 1e-05
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 198 NTDMATIVRVMARPESGLEIRDRMWLKITIPNAFIGKC 235
++ + + M PE G++ + K + G
Sbjct: 5 SSGLGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSG 42
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 41.5 bits (98), Expect = 1e-04
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Query: 47 NFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVR 106
+ G+ + + G + V + GG G GD+I+ V+ + MS +
Sbjct: 83 SVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSD 141
Query: 107 VLREVVQKPG-PIKLVVAKCWDPNPKGYFTIPR----TEPVR 143
+L+ + +++V+ P+ + R PV
Sbjct: 142 LLQ---GEADSQVEVVLHAPGAPSNTRTLQLTRQKVTINPVT 180
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 37.2 bits (87), Expect = 4e-04
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV--QKPG-PIKL 120
GIY S+++ G+IE GD I+ + N+++ L + + +K G + L
Sbjct: 2 GIYASSVVENMPA--KGKIEVGDKIISADGKNYQSAEK------LIDYISSKKAGDKVTL 53
Query: 121 VV 122
+
Sbjct: 54 KI 55
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 37.3 bits (87), Expect = 5e-04
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG-PIKLVV 122
G+YV S+ A + GD+I +++ F++ E + + +K G +K+
Sbjct: 8 GVYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSS--QEFIDYIHS--KKVGDTVKINY 61
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 37.3 bits (87), Expect = 5e-04
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG-PIKLVV 122
G+YV S++ A GR+E GD I ++ + V +RE ++ G +++
Sbjct: 6 GVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTSE--QIVSYVRE--KQAGDRVRVTF 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 8e-04
Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 39/143 (27%)
Query: 102 DEAVRVLREVVQKPG-PIKLVVAKCWDPNPKG---YFTIPRTEPVRPIDPGAWVAHTAAI 157
+ A ++ G I +V NP +F + + +R + A
Sbjct: 1647 NRADNHFKDTY---GFSILDIVIN----NPVNLTIHFGGEKGKRIRE----NYSAMIFET 1695
Query: 158 RGDGFPLRPPSVSTLTSTSSSLTSSIAETEKAFEELSLTINT-------DMATIVRVMAR 210
DG + S+S T +EK LS T T + A +
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYT---FRSEK--GLLSATQFTQPALTLMEKA-AFEDLK- 1748
Query: 211 PESGLEIRDRMWLKITIPNAFIG 233
GL I F G
Sbjct: 1749 -SKGL---------IPADATFAG 1761
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 39.0 bits (91), Expect = 0.001
Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 50 GISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVR 106
++ + + ++ G G ++ G I+ +N E ++
Sbjct: 77 DYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESELLQ 132
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 38.8 bits (91), Expect = 0.001
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 47 NFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVR 106
F GI SNKG D G+ V ++ G A G ++ GD+I+ N +N++
Sbjct: 367 IFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAE----- 420
Query: 107 VLREVVQKPGPIKLV 121
LR+V+ + +
Sbjct: 421 -LRKVLDSKPSVLAL 434
Score = 28.4 bits (64), Expect = 2.3
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS 100
G +V ++ + A I+ GD+I +N + +
Sbjct: 287 GAFVSQVLPNSS-AAKAGIKAGDVITSLNGKPISSFA 322
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 35.0 bits (81), Expect = 0.004
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 20/88 (22%)
Query: 48 FLGISIV-------------GQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDI 94
F+GI + GIYV + + G I+ GD+I++VN
Sbjct: 7 FIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSP-SQRGGIQDGDIIVKVNGR 65
Query: 95 NFENMSNDEAVRVLREVVQKPGPIKLVV 122
+ S L+E V P+ L V
Sbjct: 66 PLVDSSE------LQEAVLTESPLLLEV 87
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 34.9 bits (81), Expect = 0.006
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 23/90 (25%)
Query: 48 FLGISIVGQSN------------KGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDIN 95
LGI +V SN G+ V S+ +G +E D+I +V+D
Sbjct: 30 ALGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRSVQSNMPA--NGHLEKYDVITKVDDKE 87
Query: 96 FENMSNDEAVRVLREVVQ--KPG-PIKLVV 122
+ ++ L+ + G IK+
Sbjct: 88 IASSTD------LQSALYNHSIGDTIKITY 111
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 35.7 bits (83), Expect = 0.009
Identities = 12/84 (14%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 39 VTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFEN 98
++L L + G Y+ ++ A G ++ D+I+ +N + +
Sbjct: 232 MSLTSSKAKELKDRHRDFPDV--ISGAYIIEVIPDTP-AEAGGLKENDVIISINGQSVVS 288
Query: 99 MSNDEAVRVLREVVQKPGPIKLVV 122
++ + +V+++ + +VV
Sbjct: 289 AND------VSDVIKRESTLNMVV 306
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.011
Identities = 37/285 (12%), Positives = 75/285 (26%), Gaps = 77/285 (27%)
Query: 8 QRRRRHRPPAL------SRTSSFSSITDSSMSLN---IITV---------TLNMDTVNFL 49
QR R + + SR + + + + L + + + +D
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 50 GISIVGQSNKGGDGGIY---VGSIMKGGAV-----ALDGRIEPGDMILQVNDINFENMSN 101
+ Q D I+ + + V L +I+P + N + +
Sbjct: 175 KV----QCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 102 DEAVRVLREVVQKPGPIKLVV-AKCWDPNPKGYFTIPRTEPVRPIDPGAWVAHTAAIRGD 160
+ R + KP L+V + + + + T
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNA-----------KAWNAFNLSCKILLTT----- 272
Query: 161 GFPLRPPSVSTLTSTSSSLTSSIAETEKAFEE------LSLTINTDMATIVRVMAR--PE 212
R V+ S +++ S+ L ++ + R + P
Sbjct: 273 ----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 213 S----GLEIRDRM-----WLKITIPNAFIGKCERII--FIYSCEP 246
IRD + W + K II + EP
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCD-----KLTTIIESSLNVLEP 368
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 34.1 bits (78), Expect = 0.012
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG-PIKLVV 122
G+ + S++ G + PG +I +N + N++ L+ G I +
Sbjct: 26 GVQIDSVVPGSPA--SKVLTPGLVIESINGMPTSNLT--TYSAALKT--ISVGEVINITT 79
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP
domain, DHEX domain, GGL domain, propeller, signaling
protein; 1.95A {Mus musculus}
Length = 424
Score = 34.8 bits (79), Expect = 0.020
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 195 LTINTDMATIVRVMARPESGLEIRDRMWLKITIPNAFIG 233
+ + +V+ M PE+G+ + ++ L ++P+A G
Sbjct: 16 MAFLQKIEALVKDMQNPETGVRMHNQRVLVTSVPHAMTG 54
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 33.1 bits (76), Expect = 0.022
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 34 LNIITVTLNMDTVNFLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVND 93
+ ++ +TL+ + L + S G+ + ++ G A + PGD+IL + +
Sbjct: 8 IGVMMLTLSPSILAELQLR--EPSFPDVQHGVLIHKVILGSP-AHRAGLRPGDVILAIGE 64
Query: 94 INFENMSNDEAVRVLREVVQKPGPIKLVV 122
+N + + E V+ + + +
Sbjct: 65 QMVQNAED------VYEAVRTQSQLAVQI 87
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 34.2 bits (79), Expect = 0.031
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 59 KGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPI 118
K G GI + ++KG A G ++ D+I+ VN +++ +R+V+ I
Sbjct: 359 KDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAE------MRKVLAAKPAI 411
Query: 119 KLV 121
+
Sbjct: 412 IAL 414
Score = 28.4 bits (64), Expect = 2.4
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS 100
G +V ++ G + ++ GD+I +N + +
Sbjct: 264 GAFVSEVLPGSG-SAKAGVKAGDIITSLNGKPLNSFA 299
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 33.0 bits (76), Expect = 0.078
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 48 FLGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRV 107
LG+ + + G + ++ GGA A G + G ++ +V+D + D V
Sbjct: 230 SLGVQVTNDKD---TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAA 283
Query: 108 LREVVQKPG-PIKLVV 122
+R + PG + L
Sbjct: 284 VRS--KAPGATVALTF 297
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 32.6 bits (75), Expect = 0.085
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 122
G+ + ++ G G + PGD+IL + + +N + + E V+ + + +
Sbjct: 257 GVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAED------VYEAVRTQSQLAVQI 308
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 31.3 bits (70), Expect = 0.10
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
+++ S+ + I PGD IL++N + +E +
Sbjct: 31 FSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAI 90
Query: 109 REVVQKPGPIKLVVAKCWDPNPK 131
++ ++L++ DP P+
Sbjct: 91 KQT---SQTLQLLIEH--DPVPQ 108
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 32.3 bits (74), Expect = 0.13
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 56 QSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV-QK 114
G G+ V + A G I PGD+I+ N ++ + L+ + +K
Sbjct: 379 SPPHGNVIGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTDVKS------LQTIAQEK 431
Query: 115 PGPIKLVV 122
+ + V
Sbjct: 432 KKELLVQV 439
Score = 28.4 bits (64), Expect = 2.1
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS 100
G V + L G ++ GD+I Q+ND +
Sbjct: 283 GALVSQVNPNSPAELAG-LKAGDIITQINDTKITQAT 318
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Length = 151
Score = 30.8 bits (69), Expect = 0.22
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 67 VGSIMKGGAVALDG---RIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVV 122
+ + M+G G R+ G +I+ I + + + + LR K PG K+ +
Sbjct: 80 LQTGMRGAFGKPQGTVARVHIGQVIMS---IRTKLQNKEHVIEALRRAKFKFPGRQKIHI 136
Query: 123 AKCWD 127
+K W
Sbjct: 137 SKKWG 141
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 30.2 bits (69), Expect = 0.56
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS 100
GI V + G A G I+ D+I+ V++ +
Sbjct: 245 GIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISAL 280
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle,
tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB:
3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I
Length = 219
Score = 30.1 bits (67), Expect = 0.60
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 72 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAKCWD 127
G L R++ G +I + ++ + D V LR K PG K++++K W
Sbjct: 117 WGKPHGLAARVDIGQIIFS---VRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWG 170
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 28.4 bits (63), Expect = 1.0
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 51 ISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110
+ + G V G ++ GDM + +N ++ + + + +
Sbjct: 25 VRLSQVKRDDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQS 81
Query: 111 VVQKPG-PIKLVV 122
+ + L V
Sbjct: 82 M--NEMTEMSLTV 92
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 28.5 bits (63), Expect = 1.5
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 49 LGISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 108
+G S + GG G +V + + G D I+ +N N + +
Sbjct: 2 MGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRL----NKDNDTLK 57
Query: 109 REVVQKPG-PIKLVV 122
+ P+K+++
Sbjct: 58 DLLKANVEKPVKMLI 72
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 28.7 bits (65), Expect = 1.7
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 64 GIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMS 100
G +V ++ G + ++ GD+I +N + +
Sbjct: 264 GAFVSEVLPGSG-SAKAGVKAGDIITSLNGKPLNSFA 299
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 214
Score = 28.5 bits (63), Expect = 1.8
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 60 GGDGGIYVGSIMKGGAVALDG---RIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-P 115
G + + M+G G ++ G +I+ I + + + + LR K P
Sbjct: 104 SCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMS---IRTKLQNKEHVIEALRRAKFKFP 160
Query: 116 GPIKLVVAKCWD 127
G K+ ++K W
Sbjct: 161 GRQKIHISKKWG 172
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_I 1s1i_I 3jyw_I
Length = 224
Score = 28.5 bits (63), Expect = 1.9
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 60 GGDGGIYVGSIMKGGAVALDG---RIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-P 115
G + + M+G G R++ G ++L + + + A LR K P
Sbjct: 104 SCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS---VRCKESNAKHAEEALRRAKFKFP 160
Query: 116 GPIKLVVAKCWD 127
G K++ ++ W
Sbjct: 161 GRQKIIHSRKWG 172
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 27.5 bits (61), Expect = 1.9
Identities = 4/34 (11%), Positives = 8/34 (23%), Gaps = 3/34 (8%)
Query: 201 MATIVRVMARPESGLEIRDRMWLKITIPNAFIGK 234
+ +G+ +R N F
Sbjct: 14 WNEVTTSF---RAGMPLRKHRQHFKKYGNCFTAG 44
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 26.7 bits (59), Expect = 2.3
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 67 VGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG-PIKLVVAK 124
+ ++ A + G ++ GD I+ V+ + V PG + L + +
Sbjct: 8 LENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVT-----FVMLVRDNPGXSLALEIER 60
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure
initiativ midwest center for structural genomics, MCSG;
2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Length = 243
Score = 27.9 bits (62), Expect = 3.2
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 1 MSRRRRPQ-RRRRHRPPALSR 20
M+ RR P RR R PALSR
Sbjct: 1 MAARRAPISRRDRPAKPALSR 21
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold,
nucleic acid binding, D binding protein; 1.06A
{Silurana} PDB: 4a4i_A
Length = 90
Score = 25.9 bits (57), Expect = 4.4
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 126 WDPNPKGY-FTIPRTEPVRPIDPGAWV-AHTAAIRGDGF 162
W G+ F + P++ V H + + +GF
Sbjct: 15 WFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGF 53
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 27.2 bits (60), Expect = 4.9
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 71 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 130
G + G IL ++D+ + +EA ++ K + ++A
Sbjct: 111 DHGEGGIIVGSALENKRILIIDDVMTAGTAINEAFEIISN--AKGQVVGSIIA------- 161
Query: 131 KGYFTIPRTEPVRPIDPGAWVAHTAAIRGDGFPLRPPSVSTLTSTSSSLTSSIAETEKA 189
+ R E V D A + G P+ S+ +L + L I EK+
Sbjct: 162 -----LDRQEVVSTDDKEGLSATQTVSKKYGIPVL--SIVSLIHIITYLEGRITAEEKS 213
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics,
PSI-2, protein structure initiative; 2.04A
{Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1
c.18.1.4 d.17.6.5
Length = 306
Score = 27.1 bits (59), Expect = 5.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 68 GSIMKGGAVALDGRIEPGDMILQVND 93
G+I GG + D +I P D+++ N
Sbjct: 242 GTIFAGGVLRADEKIRPNDVVVFHNS 267
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 25.6 bits (56), Expect = 6.2
Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 51 ISIVGQSNKGGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 110
+ + G V G ++ GDM + +N ++ + + + +
Sbjct: 7 VRLSQVKRDDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQS 63
Query: 111 VVQKPGPIKLVV 122
+ + + L V
Sbjct: 64 -MNEMTEMSLTV 74
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 26.8 bits (60), Expect = 7.1
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 141 PVRPIDPGAWVAHTAAIRGDG 161
V I G+ A T + D
Sbjct: 212 RVVDIACGSGDAQTLCLTDDD 232
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding,
nucleotide serine/threonine-protein kinase, transferase,
signaling Pro; HET: ACP; 1.80A {Dictyostelium
discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Length = 287
Score = 26.9 bits (60), Expect = 7.2
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 96 FENMSNDEAVRVLREVVQK----------PGPIKLVVAKCWDPNPK 131
F+ S ++ + + ++ P ++ V+ CW +PK
Sbjct: 228 FDEYSY-GKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPK 272
>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina
thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A
1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A
Length = 247
Score = 26.4 bits (58), Expect = 8.4
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 128 PNPKGYFTIPRTEPVRPIDPGAWVAHTAAIRGD 160
NP + + PV IDP A++ A++ G+
Sbjct: 47 ENPVTPWNPEPSAPV--IDPTAYIDPQASVIGE 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,858,624
Number of extensions: 233838
Number of successful extensions: 1097
Number of sequences better than 10.0: 1
Number of HSP's gapped: 967
Number of HSP's successfully gapped: 221
Length of query: 246
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,160,982
Effective search space: 644952210
Effective search space used: 644952210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)