RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18027
(165 letters)
>gnl|CDD|119432 cd05172, PIKKc_DNA-PK, DNA-dependent protein kinase (DNA-PK),
catalytic domain; The DNA-PK catalytic domain subfamily
is part of a larger superfamily that includes the
catalytic domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. DNA-PK is a member of the phosphoinositide
3-kinase-related protein kinase (PIKK) subfamily. PIKKs
have intrinsic serine/threonine kinase activity and are
distinguished from other PKs by their unique catalytic
domain, similar to that of lipid PI3K, and their large
molecular weight (240-470 kDa). DNA-PK is comprised of a
regulatory subunit, containing the Ku70/80 subunit, and
a catalytic subunit, which contains a NUC194 domain of
unknown function, a FAT (FRAP, ATM and TRRAP) domain, a
catalytic domain, and a FATC domain at the C-terminus.
It is part of a multi-component system involved in
non-homologous end joining (NHEJ), a process of
repairing double strand breaks (DSBs) by joining
together two free DNA ends of little homology. DNA-PK
functions as a molecular sensor for DNA damage that
enhances the signal via phosphorylation of downstream
targets. It may also act as a protein scaffold that aids
the localization of DNA repair proteins to the site of
DNA damage. DNA-PK also plays a role in the maintenance
of telomeric stability and the prevention of chromosomal
end fusion.
Length = 235
Score = 135 bits (341), Expect = 3e-40
Identities = 51/95 (53%), Positives = 67/95 (70%)
Query: 2 REGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFG 61
R L+ ++ SP + LR++F +S A MC++ + LGIGDRHL N LV +TG VGIDFG
Sbjct: 104 RRALVEMSASPEAFLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFG 163
Query: 62 YSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
++FG ATQ LPIPELMPFRLTP + + EP + G
Sbjct: 164 HAFGTATQFLPIPELMPFRLTPQFVNLMEPMKADG 198
>gnl|CDD|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain.
Phosphoinositide 3-kinase isoforms participate in a
variety of processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, and
apoptosis. These homologues may be either lipid kinases
and/or protein kinases: the former phosphorylate the
3-position in the inositol ring of inositol
phospholipids. The ataxia telangiectesia-mutated gene
produced, the targets of rapamycin (TOR) and the
DNA-dependent kinase have not been found to possess
lipid kinase activity. Some of this family possess PI-4
kinase activities.
Length = 240
Score = 97.4 bits (243), Expect = 2e-25
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 16 VRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPE 75
R NF RS A + Y LG+GDRH +N ++ KTG IDFG+ G +L PE
Sbjct: 122 FEARKNFTRSCAGYSVITYILGLGDRHNDNIML-DKTGHLFHIDFGFILGNGPKLFGFPE 180
Query: 76 LMPFRLTPHILAV 88
+PFRLTP ++ V
Sbjct: 181 RVPFRLTPEMVDV 193
>gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase.
Some members of this family probably do not have lipid
kinase activity and are protein kinases, .
Length = 233
Score = 94.7 bits (236), Expect = 1e-24
Identities = 39/89 (43%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 16 VRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPE 75
R NFVRS A M + Y LG GDRHL+N LV TG+ IDFG F A + P PE
Sbjct: 114 GEARKNFVRSCAGMSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCFPKA-KRGPKPE 172
Query: 76 LMPFRLTPHILAVNEPYGSQGKRLWVRHL 104
+PFRLT + Y G R L
Sbjct: 173 RVPFRLTRPFVEAMGGYDPSGDEGLFREL 201
>gnl|CDD|119424 cd05164, PIKKc, Phosphoinositide 3-kinase-related protein kinase
(PIKK) subfamily, catalytic domain; The PIKK catalytic
domain subfamily is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. Members include ATM (Ataxia
telangiectasia mutated), ATR (Ataxia telangiectasia and
Rad3-related), TOR (Target of rapamycin), SMG-1
(Suppressor of morphogenetic effect on genitalia-1), and
DNA-PK (DNA-dependent protein kinase). PIKKs have
intrinsic serine/threonine kinase activity and are
distinguished from other PKs by their unique catalytic
domain, similar to that of lipid PI3K, and their large
molecular weight (240-470 kDa). They show strong
preference for phosphorylating serine/threonine residues
followed by a glutamine and are also referred to as
(S/T)-Q-directed kinases. They all contain a FATC (FRAP,
ATM and TRRAP, C-terminal) domain. PIKKs have diverse
functions including cell-cycle checkpoints, genome
surveillance, mRNA surveillance, and translation
control.
Length = 222
Score = 93.5 bits (233), Expect = 4e-24
Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
+++ P R N+ RS A M I Y LG+GDRHL+N L+ +TG V IDF
Sbjct: 98 LKKWFWLQFPDPEQWFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDF 157
Query: 61 GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
G F LP+PEL+PFRLT +I+ G +G
Sbjct: 158 GCIFEKGKT-LPVPELVPFRLTRNIINGMGITGVEG 192
>gnl|CDD|119418 cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and Rad3-related),
catalytic domain; The ATR catalytic domain subfamily is
part of a larger superfamily that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. ATR is also referred to as Mei-41
(Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae),
Rad3 (Schizosaccharomyces pombe), and FRAP-related
protein (human). ATR is a member of the phosphoinositide
3-kinase-related protein kinase (PIKK) subfamily. PIKKs
have intrinsic serine/threonine kinase activity and are
distinguished from other PKs by their unique catalytic
domain, similar to that of lipid PI3K, and their large
molecular weight (240-470 kDa). ATR contains a UME
domain of unknown function, a FAT (FRAP, ATM and TRRAP)
domain, a catalytic domain, and a FATC domain at the
C-terminus. Together with its downstream effector
kinase, Chk1, ATR plays a central role in regulating the
replication checkpoint. ATR stabilizes replication forks
by promoting the association of DNA polymerases with the
fork. Preventing fork collapse is essential in
preserving genomic integrity. ATR plays a role in normal
cell growth and in response to DNA damage.
Length = 237
Score = 85.4 bits (212), Expect = 6e-21
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 10 KSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQ 69
P ++ RN + RS A M + Y LG+GDRH EN L + TG V +DF F
Sbjct: 115 PDPSAWLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGE- 173
Query: 70 LLPIPELMPFRLTPHILAVNEPYGSQG 96
L +PE +PFRLT +++ G +G
Sbjct: 174 TLEVPERVPFRLTQNMVDAMGVLGVEG 200
>gnl|CDD|227365 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the
PI-3 kinase family [Signal transduction mechanisms / Cell
division and chromosome partitioning / Chromatin
structure and dynamics / DNA replication, recombination,
and repair / Intracellular trafficking and secretion].
Length = 2105
Score = 86.8 bits (215), Expect = 2e-20
Identities = 33/95 (34%), Positives = 47/95 (49%)
Query: 2 REGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFG 61
+ +P + + R NF RS A + Y LG+GDRH N L+ +G + IDFG
Sbjct: 1910 YDWFSESFPNPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFG 1969
Query: 62 YSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
+ A P PE +PFRLT +I+ G +G
Sbjct: 1970 FILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVEG 2004
>gnl|CDD|119416 cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI3K)-like family,
catalytic domain; The PI3K-like catalytic domain family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. Members of the family include PI3K,
phosphoinositide 4-kinase (PI4K), PI3K-related protein
kinases (PIKKs), and TRansformation/tRanscription
domain-Associated Protein (TRRAP). PI3Ks catalyze the
transfer of the gamma-phosphoryl group from ATP to the
3-hydroxyl of the inositol ring of
D-myo-phosphatidylinositol (PtdIns) or its derivatives,
while PI4K catalyze the phosphorylation of the
4-hydroxyl of PtdIns. PIKKs are protein kinases that
catalyze the phosphorylation of serine/threonine
residues, especially those that are followed by a
glutamine. PI3Ks play an important role in a variety of
fundamental cellular processes, including cell motility,
the Ras pathway, vesicle trafficking and secretion,
immune cell activation and apoptosis. PI4Ks produce
PtdIns(4)P, the major precursor to important signaling
phosphoinositides. PIKKs have diverse functions
including cell-cycle checkpoints, genome surveillance,
mRNA surveillance, and translation control.
Length = 219
Score = 80.0 bits (198), Expect = 5e-19
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
+ + L + R NF+ S A +A Y LGIGDRH +N ++ TG+ IDF
Sbjct: 95 LSKWLKRKSPDEDEWQEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDF 154
Query: 61 GYSFGVATQLLPIPELMPFRLTP 83
G+ FG + L E +PFRLTP
Sbjct: 155 GFIFGKRKKFLG-RERVPFRLTP 176
>gnl|CDD|119431 cd05171, PIKKc_ATM, Ataxia telangiectasia mutated (ATM), catalytic
domain; The ATM catalytic domain subfamily is part of a
larger superfamily that includes the catalytic domains
of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. ATM is a member of the phosphoinositide
3-kinase-related protein kinase (PIKK) subfamily. PIKKs
have intrinsic serine/threonine kinase activity and are
distinguished from other PKs by their unique catalytic
domain, similar to that of lipid PI3K, and their large
molecular weight (240-470 kDa). ATM contains a FAT
(FRAP, ATM and TRRAP) domain, a catalytic domain, and a
FATC domain at the C-terminus. ATM is critical in the
response to DNA double strand breaks (DSBs) caused by
radiation. It is activated at the site of a DSB and
phosphorylates key substrates that trigger pathways that
regulate DNA repair and cell cycle checkpoints at the
G1/S, S phase, and G2/M transition. Patients with the
human genetic disorder Ataxia telangiectasia (A-T),
caused by truncating mutations in ATM, show genome
instability, increased cancer risk, immunodeficiency,
compromised mobility, and neurodegeneration. A-T
displays clinical heterogeneity, which is correlated to
the degree of retained ATM activity.
Length = 279
Score = 74.2 bits (183), Expect = 2e-16
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 11 SPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQL 70
P + R + RS A I Y LG+GDRH N L+ KT V ID G +F ++
Sbjct: 158 DPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFE-QGKI 216
Query: 71 LPIPELMPFRLTPHILAVNEPYGSQG 96
LP+PE +PFRLT I+ G G
Sbjct: 217 LPVPETVPFRLTRDIVD---GMGITG 239
>gnl|CDD|119429 cd05169, PIKKc_TOR, TOR (Target of rapamycin), catalytic domain;
The TOR catalytic domain subfamily is part of a larger
superfamily that includes the catalytic domains of other
kinases such as the typical serine/threonine/tyrosine
protein kinases (PKs), aminoglycoside
phosphotransferase, choline kinase, and RIO kinases. TOR
is a member of the phosphoinositide 3-kinase-related
protein kinase (PIKK) subfamily. PIKKs have intrinsic
serine/threonine kinase activity and are distinguished
from other PKs by their unique catalytic domain, similar
to that of lipid PI3K, and their large molecular weight
(240-470 kDa). TOR contains a rapamycin binding domain,
a catalytic domain, and a FATC (FRAP, ATM and TRRAP,
C-terminal) domain at the C-terminus. It is also called
FRAP (FK506 binding protein 12-rapamycin associated
protein). TOR is a central component of the eukaryotic
growth regulatory network. It controls the expression of
many genes transcribed by all three RNA polymerases. It
associates with other proteins to form two distinct
complexes, TORC1 and TORC2. TORC1 is involved in diverse
growth-related functions including protein synthesis,
nutrient use and transport, autophagy and stress
responses. TORC2 is involved in organizing cytoskeletal
structures.
Length = 280
Score = 72.9 bits (180), Expect = 4e-16
Identities = 31/64 (48%), Positives = 38/64 (59%)
Query: 19 RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMP 78
R NF RS A M + Y LG+GDRH N ++ TG+ + IDFG F VA PE +P
Sbjct: 166 RTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVP 225
Query: 79 FRLT 82
FRLT
Sbjct: 226 FRLT 229
>gnl|CDD|119422 cd00896, PI3Kc_III, Phosphoinositide 3-kinase (PI3K), class III,
catalytic domain; The PI3K catalytic domain family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. PI3Ks catalyze the transfer of the
gamma-phosphoryl group from ATP to the 3-hydroxyl of the
inositol ring of D-myo-phosphatidylinositol (PtdIns) or
its derivatives. PI3Ks play an important role in a
variety of fundamental cellular processes, including
cell motility, the Ras pathway, vesicle trafficking and
secretion, immune cell activation and apoptosis. They
can be divided into three main classes (I, II, and III),
defined by their substrate specificity, regulation, and
domain structure. Class III PI3Ks, also called Vps34
(vacuolar protein sorting 34), contain an N-terminal
lipid binding C2 domain, a PI3K homology domain of
unknown function, and a C-terminal ATP-binding cataytic
domain. They phosphorylate only the substrate PtdIns.
They interact with a regulatory subunit, Vps15, to form
a membrane-associated complex. Class III PI3Ks are
involved in protein and vesicular trafficking and
sorting, autophagy, trimeric G-protein signaling, and
phagocytosis.
Length = 350
Score = 61.9 bits (151), Expect = 5e-12
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 20 NNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP 74
+ FV+S A C+ Y LG+GDRHL+N L+ TK G+ IDFGY G + P P
Sbjct: 188 DTFVKSCAGYCVITYILGVGDRHLDNLLL-TKDGKLFHIDFGYILGRDPKPFPPP 241
>gnl|CDD|119430 cd05170, PIKKc_SMG1, Suppressor of morphogenetic effect on
genitalia-1 (SMG-1), catalytic domain; The SMG-1
catalytic domain subfamily is part of a larger
superfamily that includes the catalytic domains of other
kinases such as the typical serine/threonine/tyrosine
protein kinases (PKs), aminoglycoside
phosphotransferase, choline kinase, and RIO kinases.
SMG-1 is a member of the phosphoinositide
3-kinase-related protein kinase (PIKK) subfamily. PIKKs
have intrinsic serine/threonine kinase activity and are
distinguished from other PKs by their unique catalytic
domain, similar to that of lipid PI3K, and their large
molecular weight (240-470 kDa). In addition to its
catalytic domain, SMG-1 contains a FATC (FRAP, ATM and
TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays
a critical role in the mRNA surveillance mechanism known
as non-sense mediated mRNA decay (NMD). NMD protects the
cells from the accumulation of aberrant mRNAs with
premature termination codons (PTCs) generated by genome
mutations and by errors during transcription and
splicing. SMG-1 phosphorylates Upf1, another central
component of NMD, at the C-terminus upon recognition of
PTCs. The phosphorylation/dephosphorylation cycle of
Upf1 is essential for promoting NMD.
Length = 307
Score = 61.7 bits (150), Expect = 6e-12
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 22 FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRL 81
+ RS A M + Y +G+GDRHL+N L+ KTG V ID+ F + L IPE +PFR+
Sbjct: 197 YARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFEKG-KSLRIPEKVPFRM 255
Query: 82 TPHILAVNEPYGSQG 96
T +I G +G
Sbjct: 256 TQNIETALGLTGVEG 270
>gnl|CDD|119417 cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K), catalytic domain;
The PI3K catalytic domain family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as the typical serine/threonine/tyrosine
protein kinases (PKs), aminoglycoside
phosphotransferase, choline kinase, and RIO kinases.
PI3Ks catalyze the transfer of the gamma-phosphoryl
group from ATP to the 3-hydroxyl of the inositol ring of
D-myo-phosphatidylinositol (PtdIns) or its derivatives.
PI3Ks play an important role in a variety of fundamental
cellular processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, immune cell
activation and apoptosis. They can be divided into three
main classes (I, II, and III), defined by their
substrate specificity, regulation, and domain structure.
Class I PI3Ks are the only enzymes capable of converting
PtdIns(4,5)P2 to the critical second messenger
PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
exist in multiple isoforms consisting of one catalytic
subunit (out of four isoforms) and one of several
regulatory subunits. Class II PI3Ks comprise three
catalytic isoforms that do not associate with any
regulatory subunits. They selectively use PtdIns as a
susbtrate to produce PtsIns(3)P.
Length = 352
Score = 61.9 bits (151), Expect = 7e-12
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 21 NFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPF 79
NF S A C+A Y LGIGDRH +N ++ TKTG IDFG+ G + I E PF
Sbjct: 190 NFTYSCAGYCVATYVLGIGDRHNDNIML-TKTGHLFHIDFGHFLGNFKKKFGIKRERAPF 248
Query: 80 RLTPHILAV 88
LTP + V
Sbjct: 249 VLTPDMAYV 257
>gnl|CDD|119420 cd00894, PI3Kc_IB_gamma, Phosphoinositide 3-kinase (PI3K), class
IB, gamma isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks can be divided into three main
classes (I, II, and III), defined by their substrate
specificity, regulation, and domain structure. Class I
PI3Ks are the only enzymes capable of converting
PtdIns(4,5)P2 to the critical second messenger
PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
exist in multiple isoforms consisting of one catalytic
subunit (out of four isoforms) and one of several
regulatory subunits. They are further classified into
class IA (alpha, beta and delta) and IB (gamma).
PI3Kgamma associates with one of two regulatory
subunits, p101 and p84. It is activated by
G-protein-coupled receptors (GPCRs) by direct binding to
their betagamma subunits. It contains an N-terminal Ras
binding domain, a lipid binding C2 domain, a PI3K
homology domain of unknown function, and a C-terminal
ATP-binding cataytic domain. PI3Kgamma signaling
controls diverse immune and vascular functions including
cell recruitment, mast cell activation, platelet
aggregation, and smooth muscle contractility.
Length = 365
Score = 58.4 bits (141), Expect = 1e-10
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 22 FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
FV S A C+A + LGIGDRH +N ++ T+TG IDFG+ G L I E +PF
Sbjct: 200 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 258
Query: 81 LTPHILAVNEPYGSQGKR 98
LTP L V G+ GK+
Sbjct: 259 LTPDFLFV---MGTSGKK 273
>gnl|CDD|119425 cd05165, PI3Kc_I, Phosphoinositide 3-kinase (PI3K), class I,
catalytic domain; The PI3K catalytic domain family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. PI3Ks catalyze the transfer of the
gamma-phosphoryl group from ATP to the 3-hydroxyl of the
inositol ring of D-myo-phosphatidylinositol (PtdIns) or
its derivatives. PI3Ks play an important role in a
variety of fundamental cellular processes, including
cell motility, the Ras pathway, vesicle trafficking and
secretion, immune cell activation and apoptosis. They
can be divided into three main classes (I, II, and III),
defined by their substrate specificity, regulation, and
domain structure. Class I PI3Ks are the only enzymes
capable of converting PtdIns(4,5)P2 to the critical
second messenger PtdIns(3,4,5)P3. In vitro, they can
also phosphorylate the substrates PtdIns and PtdIns(4)P.
Class I enzymes are heterodimers and exist in multiple
isoforms consisting of one catalytic subunit (out of
four isoforms) and one of several regulatory subunits.
They are further classified into class IA (alpha, beta
and delta) and IB (gamma).
Length = 366
Score = 54.0 bits (130), Expect = 4e-09
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 20 NNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMP 78
F S A C+A + LGIGDRH +N +V +TG+ IDFG+ G I E +P
Sbjct: 198 EEFTLSCAGYCVATFVLGIGDRHNDNIMV-KETGQLFHIDFGHILGNYKSKFGINRERVP 256
Query: 79 FRLTPHILAV 88
F LTP + V
Sbjct: 257 FVLTPDFVHV 266
>gnl|CDD|119426 cd05166, PI3Kc_II, Phosphoinositide 3-kinase (PI3K), class II,
catalytic domain; The PI3K catalytic domain family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. PI3Ks catalyze the transfer of the
gamma-phosphoryl group from ATP to the 3-hydroxyl of the
inositol ring of D-myo-phosphatidylinositol (PtdIns) or
its derivatives. PI3Ks play an important role in a
variety of fundamental cellular processes, including
cell motility, the Ras pathway, vesicle trafficking and
secretion, immune cell activation and apoptosis. They
can be divided into three main classes (I, II, and III),
defined by their substrate specificity, regulation, and
domain structure. Class II PI3Ks preferentially use
PtdIns as a substrate to produce PtdIns(3)P, but can
also phosphorylate PtdIns(4)P. They function as monomers
and do not associate with any regulatory subunits. Class
II enzymes contain an N-terminal Ras binding domain, a
lipid binding C2 domain, a PI3K homology domain of
unknown function, an ATP-binding cataytic domain, a Phox
homology (PX) domain, and a second C2 domain at the
C-terminus. They are activated by a variety of stimuli
including chemokines, cytokines, lysophosphatidic acid
(LPA), insulin, and tyrosine kinase receptors.
Length = 353
Score = 50.5 bits (121), Expect = 6e-08
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 21 NFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVA 67
NF+ S A C+A Y LGI DRH +N ++ TK+G IDFG G A
Sbjct: 189 NFIYSCAGCCVATYVLGICDRHNDNIML-TKSGHMFHIDFGKFLGHA 234
>gnl|CDD|119433 cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase (PI3K), class IA,
beta isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks can be divided into three main
classes (I, II, and III), defined by their substrate
specificity, regulation, and domain structure. Class I
PI3Ks are the only enzymes capable of converting
PtdIns(4,5)P2 to the critical second messenger
PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
exist in multiple isoforms consisting of one catalytic
subunit (out of four isoforms) and one of several
regulatory subunits. They are further classified into
class IA (alpha, beta and delta) and IB (gamma). Class
IA enzymes contain an N-terminal p85 binding domain, a
Ras binding domain, a lipid binding C2 domain, a PI3K
homology domain of unknown function, and a C-terminal
ATP-binding cataytic domain. They associate with a
regulatory subunit of the p85 family and are activated
by tyrosine kinase receptors. In addition, PI3Kbeta can
also be activated by G-protein-coupled receptors.
Deletion of PI3Kbeta in mice results in early lethality
at around day three of development. PI3Kbeta plays an
important role in regulating sustained integrin
activation and stable platelet agrregation, especially
under conditions of high shear stress.
Length = 362
Score = 48.8 bits (116), Expect = 3e-07
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 17 RLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-E 75
R F S A C+A Y LGIGDRH +N +V K G+ IDFG+ G I E
Sbjct: 191 RAIEEFTLSCAGYCVATYVLGIGDRHSDNIMV-RKNGQLFHIDFGHILGNFKSKFGIKRE 249
Query: 76 LMPFRLTPHILAVNEPYGSQGK 97
+PF LT + V + QGK
Sbjct: 250 RVPFILTYDFIHVIQ----QGK 267
>gnl|CDD|119427 cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinase (PI4K), Type
III, alpha isoform, catalytic domain; The PI4K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI4Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 4-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
to generate PtdIns(4)P, the major precursor in the
synthesis of other phosphoinositides including
PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two
isoforms of type III PI4K, alpha and beta, exist in most
eukaryotes. PI4KIIIalpha is a 220 kDa protein found in
the plasma membrane and the endoplasmic reticulum (ER).
The role of PI4KIIIalpha in the ER remains unclear. In
the plasma membrane, it provides PtdIns(4)P, which is
then converted by PI5Ks to PtdIns(4,5)P2, an important
signaling molecule. Vertebrate PI4KIIIalpha is also part
of a signaling complex associated with P2X7 ion
channels. The yeast homolog, Stt4p, is also important in
regulating the conversion of phosphatidylserine to
phosphatidylethanolamine at the ER and Golgi interface.
Mammalian PI4KIIIalpha is highly expressed in the
nervous system.
Length = 311
Score = 47.7 bits (114), Expect = 4e-07
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 19 RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP---- 74
R NF+RS A + Y L I DRH N ++ G + IDFG+ F ++ P
Sbjct: 145 RENFIRSMAAYSLISYLLQIKDRHNGNIMI-DDDGHIIHIDFGFIFEIS------PGGNL 197
Query: 75 --ELMPFRLT 82
E PF+LT
Sbjct: 198 KFESAPFKLT 207
>gnl|CDD|119419 cd00893, PI4Kc_III, Phosphoinositide 4-kinase (PI4K), Type III,
catalytic domain; The PI4K catalytic domain family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. PI4Ks catalyze the transfer of the
gamma-phosphoryl group from ATP to the 4-hydroxyl of the
inositol ring of D-myo-phosphatidylinositol (PtdIns) to
generate PtdIns(4)P, the major precursor in the
synthesis of other phosphoinositides including
PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There
are two types of PI4Ks, types II and III. Type II PI4Ks
lack the characteristic catalytic kinase domain present
in PI3Ks and type III PI4Ks, and are excluded from this
family. Two isoforms of type III PI4K, alpha and beta,
exist in most eukaryotes.
Length = 289
Score = 47.4 bits (113), Expect = 5e-07
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 19 RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMP 78
R NF+ S A + Y L I DRH N L+ G + IDFG+ + E
Sbjct: 124 RYNFIESMAGYSLLCYLLQIKDRHNGNILL-DSDGHIIHIDFGFILDSSPGNNLGFEPAA 182
Query: 79 FRLTPHIL 86
F+ T ++
Sbjct: 183 FKFTKEMV 190
>gnl|CDD|119434 cd05174, PI3Kc_IA_delta, Phosphoinositide 3-kinase (PI3K), class
IA, delta isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks can be divided into three main
classes (I, II, and III), defined by their substrate
specificity, regulation, and domain structure. Class I
PI3Ks are the only enzymes capable of converting
PtdIns(4,5)P2 to the critical second messenger
PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
exist in multiple isoforms consisting of one catalytic
subunit (out of four isoforms) and one of several
regulatory subunits. They are further classified into
class IA (alpha, beta and delta) and IB (gamma). Class
IA enzymes contain an N-terminal p85 binding domain, a
Ras binding domain, a lipid binding C2 domain, a PI3K
homology domain of unknown function, and a C-terminal
ATP-binding cataytic domain. They associate with a
regulatory subunit of the p85 family and are activated
by tyrosine kinase receptors. PI3Kdelta is mainly
expressed in immune cells and plays an important role in
cellular and humoral immunity. It plays a major role in
antigen receptor signaling in B-cells, T-cells, and mast
cells. It regulates the differentiation of peripheral
helper T-cells and controls the development and function
of regulatory T-cells.
Length = 361
Score = 45.4 bits (107), Expect = 3e-06
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 22 FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFG-VATQLLPIPELMPFR 80
F S A C+A Y LGIGDRH +N ++ ++G+ IDFG+ G T+ E +PF
Sbjct: 196 FTLSCAGYCVATYVLGIGDRHSDNIMI-RESGQLFHIDFGHFLGNFKTKFGINRERVPFI 254
Query: 81 LT 82
LT
Sbjct: 255 LT 256
>gnl|CDD|119421 cd00895, PI3Kc_C2_beta, Phosphoinositide 3-kinase (PI3K), class II,
beta isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks play an important role in a
variety of fundamental cellular processes, including
cell motility, the Ras pathway, vesicle trafficking and
secretion, immune cell activation and apoptosis. They
can be divided into three main classes (I, II, and III),
defined by their substrate specificity, regulation, and
domain structure. Class II PI3Ks preferentially use
PtdIns as a substrate to produce PtdIns(3)P, but can
also phosphorylate PtdIns(4)P. They function as monomers
and do not associate with any regulatory subunits. Class
II enzymes contain an N-terminal Ras binding domain, a
lipid binding C2 domain, a PI3K homology domain of
unknown function, an ATP-binding cataytic domain, a Phox
homology (PX) domain, and a second C2 domain at the
C-terminus. The class II beta isoform, PI3K-C2beta,
contributes to the migration and survival of cancer
cells. It regulates Rac activity and impacts membrane
ruffling, cell motility, and cadherin-mediated cell-cell
adhesion.
Length = 354
Score = 41.9 bits (98), Expect = 5e-05
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 21 NFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVA 67
NF+ S A C+A Y LGI DRH +N ++ T TG IDFG G A
Sbjct: 190 NFIYSCAGCCVATYVLGICDRHNDNIMLKT-TGHMFHIDFGRFLGHA 235
>gnl|CDD|119428 cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase (PI4K), Type
III, beta isoform, catalytic domain; The PI4K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI4Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 4-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
to generate PtdIns(4)P, the major precursor in the
synthesis of other phosphoinositides including
PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two
isoforms of type III PI4K, alpha and beta, exist in most
eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is
a 110 kDa protein that is localized to the Golgi and the
nucleus. It is required for maintaining the structural
integrity of the Golgi complex (GC), and is a key
regulator of protein transport from the GC to the plasma
membrane. PI4KIIIbeta also functions in the genesis,
transport, and exocytosis of synaptic vesicles. The
Drosophila PI4KIIIbeta is essential for cytokinesis
during spermatogenesis.
Length = 293
Score = 41.4 bits (98), Expect = 6e-05
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 19 RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP---- 74
+ NF+ S A + Y L I DRH N L+ G + IDFG+ + P
Sbjct: 126 QKNFIESLAGYSLICYLLQIKDRHNGNILI-DNDGHIIHIDFGFMLSNS------PGNVG 178
Query: 75 -ELMPFRLTPHILAV 88
E PF+LT + V
Sbjct: 179 FETAPFKLTQEYIEV 193
>gnl|CDD|88554 cd05175, PI3Kc_IA_alpha, Phosphoinositide 3-kinase (PI3K), class
IA, alpha isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks can be divided into three main
classes (I, II, and III), defined by their substrate
specificity, regulation, and domain structure. Class I
PI3Ks are the only enzymes capable of converting
PtdIns(4,5)P2 to the critical second messenger
PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
exist in multiple isoforms consisting of one catalytic
subunit (out of four isoforms) and one of several
regulatory subunits. They are further classified into
class IA (alpha, beta and delta) and IB (gamma). Class
IA enzymes contain an N-terminal p85 binding domain, a
Ras binding domain, a lipid binding C2 domain, a PI3K
homology domain of unknown function, and a C-terminal
ATP-binding cataytic domain. They associate with a
regulatory subunit of the p85 family and are activated
by tyrosine kinase receptors. PI3Kalpha plays an
important role in insulin signaling. It also mediates
physiologic heart growth and provides protection from
stress. Activating mutations of PI3Kalpha is associated
with diverse forms of cancer at high frequency.
Length = 366
Score = 40.8 bits (95), Expect = 1e-04
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 22 FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFR 80
F RS A C+A + LGIGDRH N +V G+ IDFG+ + E +PF
Sbjct: 199 FTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 257
Query: 81 LTPHILAV 88
LT L V
Sbjct: 258 LTQDFLIV 265
>gnl|CDD|119435 cd05176, PI3Kc_C2_alpha, Phosphoinositide 3-kinase (PI3K), class
II, alpha isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks play an important role in a
variety of fundamental cellular processes, including
cell motility, the Ras pathway, vesicle trafficking and
secretion, immune cell activation and apoptosis. They
can be divided into three main classes (I, II, and III),
defined by their substrate specificity, regulation, and
domain structure. Class II PI3Ks preferentially use
PtdIns as a substrate to produce PtdIns(3)P, but can
also phosphorylate PtdIns(4)P. They function as monomers
and do not associate with any regulatory subunits. Class
II enzymes contain an N-terminal Ras binding domain, a
lipid binding C2 domain, a PI3K homology domain of
unknown function, an ATP-binding cataytic domain, a Phox
homology (PX) domain, and a second C2 domain at the
C-terminus. The class II alpha isoform, PI3K-C2alpha,
plays key roles in clathrin assembly and
clathrin-mediated membrane trafficking, insulin
signaling, vascular smooth muscle contraction, and the
priming of neurosecretory granule exocytosis.
Length = 353
Score = 40.8 bits (95), Expect = 1e-04
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 21 NFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPF 79
NF+ S A C+A Y LGI DRH +N ++ TG IDFG G A + PF
Sbjct: 189 NFIYSCAGCCVATYVLGICDRHNDNIML-RSTGHMFHIDFGKFLGHAQMFGSFKRDRAPF 247
Query: 80 RLT 82
LT
Sbjct: 248 VLT 250
>gnl|CDD|119436 cd05177, PI3Kc_C2_gamma, Phosphoinositide 3-kinase (PI3K), class
II, gamma isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks play an important role in a
variety of fundamental cellular processes, including
cell motility, the Ras pathway, vesicle trafficking and
secretion, immune cell activation and apoptosis. They
can be divided into three main classes (I, II, and III),
defined by their substrate specificity, regulation, and
domain structure. Class II PI3Ks preferentially use
PtdIns as a substrate to produce PtdIns(3)P, but can
also phosphorylate PtdIns(4)P. They function as monomers
and do not associate with any regulatory subunits. Class
II enzymes contain an N-terminal Ras binding domain, a
lipid binding C2 domain, a PI3K homology domain of
unknown function, an ATP-binding cataytic domain, a Phox
homology (PX) domain, and a second C2 domain at the
C-terminus. The class II gamma isoform, PI3K-C2gamma, is
expressed in the liver, breast, and prostate. It's
biological function remains unknown.
Length = 354
Score = 39.9 bits (93), Expect = 3e-04
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 21 NFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVA 67
NF S A C+ + LG+ DRH +N ++ T +G IDFG G A
Sbjct: 190 NFFHSCAGWCVVTFILGVCDRHNDNIML-THSGHMFHIDFGKFLGHA 235
>gnl|CDD|119423 cd05163, TRRAP, TRansformation/tRanscription domain-Associated
Protein (TRRAP), pseudokinase domain; The TRRAP
catalytic domain is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. TRRAP shows some similarity to
members of the phosphoinositide 3-kinase-related protein
kinase (PIKK) subfamily in that it contains a FATC
(FRAP, ATM and TRRAP, C-terminal) domain and has a large
molecular weight. Unlike PIKK proteins, however, it
contains an inactive PI3K-like pseudokinase domain,
which lacks the conserved residues necessary for ATP
binding and catalytic activity. TRRAP also contains many
motifs that may be critical for protein-protein
interactions. TRRAP is a common component of many
histone acetyltransferase (HAT) complexes, and is
responsible for the recruitment of these complexes to
chromatin during transcription, replication, and DNA
repair. TRRAP also exists in non-HAT complexes such as
the p400 and MRN complexes, which are implicated in
ATP-dependent remodeling and DNA repair, respectively.
Length = 253
Score = 38.4 bits (90), Expect = 8e-04
Identities = 22/81 (27%), Positives = 32/81 (39%)
Query: 5 LLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSF 64
+LS + + R F A + Y L I +R+ + + TG D S
Sbjct: 125 ILSTFPTYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSI 184
Query: 65 GVATQLLPIPELMPFRLTPHI 85
L E +PFRLTP+I
Sbjct: 185 NNNKPLFHNNEPVPFRLTPNI 205
>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional.
Length = 1374
Score = 32.7 bits (74), Expect = 0.087
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 21 NFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVAT 68
NF+ S + Y IGDRH N L+ T G + IDF + F T
Sbjct: 1132 NFLASAKLFLLLNYIFSIGDRHKGNVLIGT-NGALLHIDFRFIFSEKT 1178
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 31.2 bits (71), Expect = 0.25
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 18/97 (18%)
Query: 56 VGIDFG--------YSFGVATQLLPIPELMPFRLTPHILAVNEP----YGSQGKRLWVRH 103
+GID G G +++ E RLTP ++A ++ G KR V
Sbjct: 8 IGIDLGTTNSVVAVMRGGGLPKVIENAEGE--RLTPSVVAFSKNGEVLVGQAAKRQAVD- 64
Query: 104 LNEIDTLLSKSFLLSVGVYNQKIL--EQKQYLWFIQI 138
N +T+ S + G KI + +I
Sbjct: 65 -NPENTIFSIKRKIGRGSNGLKISVEVDGKKYTPEEI 100
>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit
[Intracellular trafficking and secretion].
Length = 898
Score = 29.6 bits (66), Expect = 0.77
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 14 NRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCV 56
NR+ L NN VRS A ++++ L I D ++ RC+
Sbjct: 494 NRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALK-RCL 535
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 28.5 bits (63), Expect = 1.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 110 LLSKSFLLSVGVYNQKILEQKQYLWFI 136
LL KSF+ GVY Q + ++ +WF+
Sbjct: 175 LLRKSFMSIKGVYYQATIGGEKVVWFV 201
>gnl|CDD|224531 COG1615, COG1615, Uncharacterized conserved protein [Function
unknown].
Length = 885
Score = 27.8 bits (62), Expect = 3.5
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 77 MPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLSV 119
+PF L HI + + Q L H+N+ + V
Sbjct: 628 IPFELRSHIRYPEDLFKVQRLLLAKYHVNDPGVFYNTEDFWEV 670
>gnl|CDD|218955 pfam06247, Plasmod_Pvs28, Plasmodium ookinete surface protein
Pvs28. This family consists of several ookinete
surface protein (Pvs28) from several species of
Plasmodium. Pvs25 and Pvs28 are expressed on the
surface of ookinetes. These proteins are potential
candidates for vaccine and induce antibodies that block
the infectivity of Plasmodium vivax in immunised
animals.
Length = 196
Score = 27.0 bits (60), Expect = 4.1
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 9/42 (21%)
Query: 20 NNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFG 61
++ C CI YTL G VC +C G
Sbjct: 64 KAEEKALKCGCINGYTLSQG--------VCVPN-KCNNKVCG 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.427
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,330,275
Number of extensions: 750302
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 38
Length of query: 165
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 75
Effective length of database: 6,945,742
Effective search space: 520930650
Effective search space used: 520930650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)