RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18027
(165 letters)
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 67.6 bits (164), Expect = 6e-14
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 10 KSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQ 69
FV S A C+A + LGIGDRH +N ++ ++TG IDFG+ G
Sbjct: 775 PIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-SETGNLFHIDFGHILGNYKS 833
Query: 70 LLPI-PELMPFRLTPHILAV 88
L I E +PF LTP L V
Sbjct: 834 FLGINKERVPFVLTPDFLFV 853
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 66.0 bits (160), Expect = 2e-13
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 19 RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELM 77
F S A C+A Y LGIGDRH +N ++ ++G+ IDFG+ G I E +
Sbjct: 768 IEEFTLSCAGYCVATYVLGIGDRHSDNIMI-RESGQLFHIDFGHFLGNFKTKFGINRERV 826
Query: 78 PFRLTPHILAVNEPYGSQG 96
PF LT + V + +
Sbjct: 827 PFILTYDFVHVIQQGKTNN 845
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase;
2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A*
2x6j_A* 2x6k_A*
Length = 696
Score = 64.5 bits (156), Expect = 6e-13
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 17 RLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPEL 76
+ + +++S A C+ Y LG+GDRHL+N L+ T G+ IDFGY G P P
Sbjct: 529 EVMDTYIKSCAGYCVITYLLGVGDRHLDNLLL-TTNGKLFHIDFGYILGRD----PKPMP 583
Query: 77 MPFRLTPHILAV 88
P +L+ ++
Sbjct: 584 PPMKLSKEMVEA 595
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1,
phosphatidilynositol 3,4,5- triphosphate, wortmannin,
H1047R, ATP-binding, disease mutation, kinase; HET: KWT;
2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 64.1 bits (155), Expect = 9e-13
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 19 RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVA-TQLLPIPELM 77
+ F RS A C+A + LGIGDRH N +V G+ IDFG+ + E +
Sbjct: 917 IDLFTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERV 975
Query: 78 PFRLTPHILAV 88
PF LT L V
Sbjct: 976 PFVLTQDFLIV 986
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta
protein, PIK3C3, compound 15E, structural genomics, SGC
stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Length = 614
Score = 63.7 bits (154), Expect = 1e-12
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 17 RLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPEL 76
+ + +V+S A C+ Y LG+GDRHL+N L+ TKTG+ IDFGY G P P
Sbjct: 455 EVMDTYVKSCAGYCVITYILGVGDRHLDNLLL-TKTGKLFHIDFGYILGRD----PKPLP 509
Query: 77 MPFRLTPHILAVNEPYGSQG----KRLWV-------RHLNEIDTLLS 112
P +L ++ S+ ++ R+ N I L S
Sbjct: 510 PPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNLFS 556
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 63.4 bits (153), Expect = 2e-12
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 19 RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELM 77
F S A C+A Y LGIGDRH +N +V KTG+ IDFG+ G I E +
Sbjct: 920 IEEFTLSCAGYCVASYVLGIGDRHSDNIMV-KKTGQLFHIDFGHILGNFKSKFGIKRERV 978
Query: 78 PFRLTPHILAVNEPYGSQG 96
PF LT + V + +
Sbjct: 979 PFILTYDFIHVIQQGKTGN 997
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.11
Identities = 29/156 (18%), Positives = 45/156 (28%), Gaps = 51/156 (32%)
Query: 5 LLSVAKS-PMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGI----- 58
LLS+ S P+ V A + LG L + L TG G+
Sbjct: 231 LLSIPISCPLI-------GVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAVA 282
Query: 59 --------DF--------GYSF--GVATQLLPIPELMP-FRLTPHILAVNEPYGSQGKR- 98
F F GV E P L P IL + +G
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCY-----EAYPNTSLPPSILEDSLENN-EGVPS 336
Query: 99 --LWVR---------HLNEIDTLLSKSFLLSVGVYN 123
L + ++N+ ++ L + + + N
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps,
trans-prenyltransferase; 2.40A {Sulfolobus solfataricus}
PDB: 2azk_A
Length = 289
Score = 28.1 bits (63), Expect = 1.4
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 108 DTLLSKSFLLSVGVYNQKILE 128
+ L+ + + Y L
Sbjct: 118 NYLIPTALRIIQTSYGDDALN 138
>3to3_A Petrobactin biosynthesis protein ASBB; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
alpha-beta structure; HET: MSE ATP; 2.38A {Bacillus
anthracis}
Length = 619
Score = 27.7 bits (61), Expect = 2.1
Identities = 12/56 (21%), Positives = 15/56 (26%), Gaps = 3/56 (5%)
Query: 42 HLENTLVCTKTGRCVGI---DFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGS 94
H +N ++ K G V I DF L P H N
Sbjct: 439 HGQNMILVHKEGLPVRIALKDFHEGLEFYRPFLKEMNKCPDFTKMHKTYANGKMND 494
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase,
aminoglycoside, phosphorylation, transferase-antibiotic
complex; HET: TOY; 1.80A {Enterococcus casseliflavus}
PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A*
3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A*
4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Length = 304
Score = 27.5 bits (61), Expect = 2.2
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 39 GDRHLENTLVCTKTGRCVG-IDFG 61
D ++ L T+ G IDFG
Sbjct: 196 NDFSSDHILFDTEKNTICGIIDFG 219
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 27.1 bits (59), Expect = 3.3
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 20 NNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVG 57
+ A CI + + L C G C
Sbjct: 344 LPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHN 381
>2x0q_A ALCC, alcaligin biosynthesis protein; adenylation, siderophores,
iron ACQU biosynthetic protein; HET: ATP; 1.96A
{Bordetella bronchiseptica} PDB: 2x0o_A* 2x0p_A*
Length = 618
Score = 26.9 bits (59), Expect = 3.7
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 42 HLENTLVCTKTGRCVGI---DFGYSFGVATQLLPIPELMP 78
H EN ++ + G V D + + +P+
Sbjct: 449 HGENVILVIQDGVPVRAFMKDIAEESSILNPQVRLPQAAQ 488
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus,
phosphoprotein, UBL conjugation pathway, WD repeat,
nuclear protein; 1.60A {Saccharomyces cerevisiae}
Length = 253
Score = 26.6 bits (58), Expect = 4.5
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 125 KILEQKQYLWFIQINVTAMSHQPKMKE 151
K+L KQYL N + + +
Sbjct: 3 KVLPVKQYLIMENYNPDTI--FNGIVK 27
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for
structural genomics, protein struc initiative, MCSG,
STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Length = 99
Score = 25.5 bits (56), Expect = 5.2
Identities = 4/32 (12%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 92 YGSQGKRLWVRHLNEIDTLLSKSFLLSVGVYN 123
+ +G + + +NE S++ + + +++
Sbjct: 72 FRREGAEVRIVGMNE----ASETMVDRLAIHD 99
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 25.8 bits (57), Expect = 6.5
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 10/45 (22%)
Query: 20 NNFVRSYACMCIAQYTLGIGDRH--------LENTLVCTKTGRCV 56
N C + E +C + G+C+
Sbjct: 96 NTSEYKILCPGGEGFRPN-PITVILEDIDECQELPGLC-QGGKCI 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.427
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,436,217
Number of extensions: 131964
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 19
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.8 bits)