RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18027
         (165 letters)



>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
           catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 369

 Score = 72.8 bits (178), Expect = 2e-16
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 1   MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
           +   L                FV S A  C+A + LGIGDRH +N ++  +TG    IDF
Sbjct: 182 LSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMIS-ETGNLFHIDF 240

Query: 61  GYSFGVATQLLPI-PELMPFRLTPHILAVNEPYGSQG 96
           G+  G     L I  E +PF LTP  L V    G + 
Sbjct: 241 GHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKT 277


>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit
           alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 166

 Score = 28.6 bits (64), Expect = 0.22
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 51  KTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYG 93
           K G  VG+ FGY  GV  +    PE  P     H + V +P G
Sbjct: 65  KHGGIVGV-FGYGGGVIGRYCDQPEKFPGVAHFHTVRVAQPSG 106


>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit
           alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 166

 Score = 28.6 bits (64), Expect = 0.24
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 51  KTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYG 93
           K G  V +  GY  GV  +   + E +P     H + +N+P G
Sbjct: 63  KHGGIVSV-VGYGGGVIGRYSDLGEQIPEVEHFHTMRINQPSG 104


>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein
           IscX {Escherichia coli [TaxId: 562]}
          Length = 64

 Score = 24.2 bits (53), Expect = 2.6
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 8/37 (21%)

Query: 98  RLWVRHLNEIDTLLSKSFLLSVGVYNQKILEQKQYLW 134
             W+  L + D     S        N+KILE    +W
Sbjct: 32  HQWICDLEDFDDDPQAS--------NEKILEAILLVW 60


>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL)
          receptor, different EGF domains {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 41

 Score = 23.5 bits (51), Expect = 2.8
 Identities = 5/23 (21%), Positives = 6/23 (26%), Gaps = 1/23 (4%)

Query: 20 NNFVRSYACMCIAQYTLGIGDRH 42
           N    Y C C   + L      
Sbjct: 15 VNLEGGYKCQCEEGFQLD-PHTK 36


>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 53

 Score = 23.8 bits (51), Expect = 3.1
 Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)

Query: 21 NFVRSYACMCIAQYTLGIGDRH 42
          N+V  Y C C   Y L   DRH
Sbjct: 28 NYVGGYFCSCRPGYELQ-EDRH 48


>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
          serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 45

 Score = 23.7 bits (51), Expect = 3.1
 Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)

Query: 20 NNFVRSYACMCIAQYTLGIGDRH 42
          +N +  + C C A Y L   ++ 
Sbjct: 19 HNHLGGFYCSCRAGYVLH-RNKR 40


>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
          serine protease 2, MASP2 {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 45

 Score = 22.9 bits (49), Expect = 5.8
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)

Query: 21 NFVRSYACMCIAQYTLGIGDRH 42
          N++  Y C C   Y L   ++H
Sbjct: 20 NYLGGYYCSCRVGYILH-QNKH 40


>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
           fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 185

 Score = 24.6 bits (53), Expect = 6.0
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 8/59 (13%)

Query: 53  GRCVGIDFGYSF-GVATQLLPIPELMPF----RLTPHILAVNEP---YGSQGKRLWVRH 103
           G  VGID G ++  V        E++      R TP  +A  +     G   K     +
Sbjct: 1   GPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 596,306
Number of extensions: 25782
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 11
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.8 bits)