BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18030
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCC|F Chain F, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|F Chain F, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|F Chain F, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 109
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 63/95 (66%)
Query: 25 ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 84
++KW + +GF KYGL DD E V+EA+RRLPE L ++R FR RA+ LN+++ I
Sbjct: 15 GIRKWYYNAAGFNKYGLMRDDTIYENDDVKEAIRRLPENLYDDRMFRIKRALDLNMRQQI 74
Query: 85 LPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 119
LPK+QWTKYE++ YL+PY+++V W K
Sbjct: 75 LPKEQWTKYEEDVPYLEPYLKEVIRERKEREEWDK 109
>pdb|3H1H|F Chain F, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|S Chain S, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|F Chain F, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|S Chain S, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|F Chain F, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|S Chain S, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|F Chain F, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|S Chain S, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3L70|F Chain F, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|S Chain S, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|F Chain F, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|S Chain S, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|F Chain F, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|S Chain S, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|F Chain F, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|S Chain S, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|F Chain F, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|S Chain S, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|F Chain F, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|S Chain S, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|F Chain F, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|S Chain S, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 110
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 63/102 (61%)
Query: 18 SGFRKYGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQ 77
G R ++KW + +GF KYGL DD E V+EAL+RLPE L NER FR RA+
Sbjct: 8 GGGRLMDRIRKWYYNAAGFNKYGLMRDDTLYEDDDVKEALKRLPEDLYNERMFRIKRALD 67
Query: 78 LNIQKSILPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 119
L+++ ILPK+QW KYE++ YL+PY+++V W K
Sbjct: 68 LSLKHRILPKEQWVKYEEDKPYLEPYLKEVIRERLEREAWNK 109
>pdb|1QCR|F Chain F, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 103
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 63/95 (66%)
Query: 25 ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 84
++KW + +GF K GL DD +E V+EA+RRLPE L ++R FR RA+ L++++ I
Sbjct: 8 GIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQI 67
Query: 85 LPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 119
LPK+QWTKYE++ YL+PY+++V W K
Sbjct: 68 LPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 102
>pdb|1BGY|F Chain F, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|R Chain R, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|F Chain F, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|F Chain F, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|F Chain F, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|F Chain F, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|S Chain S, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|F Chain F, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|S Chain S, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|F Chain F, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|S Chain S, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|F Chain F, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|F Chain F, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|FF Chain f, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 110
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 63/95 (66%)
Query: 25 ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 84
++KW + +GF K GL DD +E V+EA+RRLPE L ++R FR RA+ L++++ I
Sbjct: 15 GIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQI 74
Query: 85 LPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 119
LPK+QWTKYE++ YL+PY+++V W K
Sbjct: 75 LPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 109
>pdb|1SQP|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 110
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 63/94 (67%)
Query: 26 LQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSIL 85
++KW + +GF K GL DD +E V+EA+RRLPE L ++R FR RA+ L++++ IL
Sbjct: 16 IRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQIL 75
Query: 86 PKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 119
PK+QWTKYE++ YL+PY+++V W K
Sbjct: 76 PKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 109
>pdb|3CWB|F Chain F, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|S Chain S, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1L|F Chain F, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|S Chain S, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
Length = 110
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 63/102 (61%)
Query: 18 SGFRKYGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQ 77
G R ++KW + +GF KYGL DD E V+EAL+RLP+ L NER FR RA+
Sbjct: 8 GGGRLMDRIRKWYYNAAGFNKYGLMRDDTLYEDDDVKEALKRLPKDLYNERMFRIKRALD 67
Query: 78 LNIQKSILPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 119
L+++ ILPK+QW KYE++ YL+PY+++V W K
Sbjct: 68 LSLKHRILPKEQWVKYEEDKPYLEPYLKEVIRERLEREAWNK 109
>pdb|1EZV|F Chain F, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KB9|G Chain G, Yeast Cytochrome Bc1 Complex
pdb|1P84|G Chain G, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
Length = 125
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 34 SGFRKYGLYYDDL-ANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTK 92
+G++K GL +DDL A E P+++ ALRRLPE R +R +RA Q + +LP+++W K
Sbjct: 34 AGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIK 93
Query: 93 YEDETRYLKPYI 104
+++ YL PYI
Sbjct: 94 AQEDVPYLLPYI 105
>pdb|2IBZ|F Chain F, Yeast Cytochrome Bc1 Complex With Stigmatellin
Length = 127
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 34 SGFRKYGLYYDDL-ANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTK 92
+G++K GL +DDL A E P+++ ALRRLPE R +R +RA Q + +LP+++W K
Sbjct: 36 AGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIK 95
Query: 93 YEDETRYLKPYI 104
+++ YL PYI
Sbjct: 96 AQEDVPYLLPYI 107
>pdb|1KYO|G Chain G, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|R Chain R, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|3CX5|G Chain G, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|R Chain R, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|G Chain G, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|R Chain R, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 126
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 34 SGFRKYGLYYDDL-ANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTK 92
+G++K GL +DDL A E P+++ ALRRLPE R +R +RA Q + +LP+++W K
Sbjct: 35 AGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIK 94
Query: 93 YEDETRYLKPYI 104
+++ YL PYI
Sbjct: 95 AQEDVPYLLPYI 106
>pdb|2PJU|A Chain A, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|B Chain B, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|C Chain C, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|D Chain D, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
Length = 225
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 36 FRKYGLYYDDLANETPV---VEEALRRLPEKLKNER 68
FR L +D LAN TP+ E+A+ + +KL NER
Sbjct: 28 FRDISLEFDHLANITPIQLGFEKAVTYIRKKLANER 63
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 36 FRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKY 93
FR+ G YY ++ P ++ ++ E + + + Q RA + I+ D W ++
Sbjct: 721 FRQEGFYYTNMLEAPPEIDRVVQYTYEIARLQANMGQFRAA----LRRIMDDDDWVRF 774
>pdb|3DKR|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DLT|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYI|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYV|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3E1G|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
Length = 251
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 35 GFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQK 82
GF KY Y + LA ++ + L LP +L F A LN+ K
Sbjct: 137 GFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVK 184
>pdb|2CH4|A Chain A, Complex Between Bacterial Chemotaxis Histidine Kinase Chea
Domains P4 And P5 And Receptor-Adaptor Protein Chew
pdb|2CH4|B Chain B, Complex Between Bacterial Chemotaxis Histidine Kinase Chea
Domains P4 And P5 And Receptor-Adaptor Protein Chew
pdb|3UR1|A Chain A, The Structure Of A Ternary Complex Between Chea Domains P4
And P5 With Chew And With A Truncated Fragment Of Tm14,
A Chemoreceptor Analog From Thermotoga Maritima
Length = 320
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 35 GFRKYGLYYDDLANETPVVEEALRRLPEKLK 65
G RKYG+ DDL + +V ++L ++ ++K
Sbjct: 267 GNRKYGIVVDDLLGQDDIVIKSLGKVFSEVK 297
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 13 WAWEYSGFRKYGALQK-WAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERH 69
WA Y F + Q WA + F++ LA+ET E AL + +LK+ RH
Sbjct: 248 WATNYCTFMRESQTQVIWATGLNNFKQ-------LAHETKGKEFALTPIKTELKDIRH 298
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 26 LQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRL 60
L+ W W+ RK +Y D P+ +E L +L
Sbjct: 509 LENWVWDVDSLRKLSKHYKD---GHPITDELLEKL 540
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 26 LQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRL 60
L+ W W+ RK +Y D P+ +E L +L
Sbjct: 509 LENWVWDVDSLRKLSKHYKD---GHPITDELLEKL 540
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,755,202
Number of Sequences: 62578
Number of extensions: 144305
Number of successful extensions: 411
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 28
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)