Query psy18030
Match_columns 121
No_of_seqs 112 out of 216
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 20:41:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02271 UCR_14kD: Ubiquinol-c 100.0 1.6E-48 3.5E-53 281.6 10.7 97 20-116 8-105 (105)
2 KOG3440|consensus 100.0 7.5E-48 1.6E-52 283.8 9.3 103 18-120 11-114 (122)
3 KOG1673|consensus 73.4 3.5 7.5E-05 33.2 2.8 38 22-59 107-150 (205)
4 COG0568 RpoD DNA-directed RNA 68.3 3.3 7.1E-05 35.7 1.8 38 21-64 113-151 (342)
5 TIGR03761 ICE_PFL4669 integrat 67.8 8.3 0.00018 31.2 3.9 42 25-66 157-201 (216)
6 PRK07122 RNA polymerase sigma 47.0 44 0.00095 26.8 4.8 47 36-83 60-112 (264)
7 PF08900 DUF1845: Domain of un 41.7 28 0.00061 27.7 2.9 38 24-61 158-195 (217)
8 TIGR02393 RpoD_Cterm RNA polym 32.4 55 0.0012 25.4 3.2 48 36-84 20-73 (238)
9 PF08134 cIII: cIII protein fa 28.6 66 0.0014 20.2 2.4 18 61-78 18-35 (44)
10 PRK05658 RNA polymerase sigma 27.4 56 0.0012 29.5 2.8 47 36-83 400-452 (619)
11 PRK05901 RNA polymerase sigma 27.1 42 0.0009 30.3 1.9 47 36-82 291-342 (509)
12 PF09803 DUF2346: Uncharacteri 26.8 1.7E+02 0.0037 20.1 4.5 67 13-79 4-76 (80)
13 PF08707 PriCT_2: Primase C te 24.7 54 0.0012 21.6 1.7 24 52-75 1-24 (78)
14 PF02809 UIM: Ubiquitin intera 22.1 56 0.0012 16.7 1.1 11 71-81 6-16 (18)
15 PF11387 DUF2795: Protein of u 21.6 39 0.00084 20.6 0.5 16 50-65 23-38 (44)
No 1
>PF02271 UCR_14kD: Ubiquinol-cytochrome C reductase complex 14kD subunit; InterPro: IPR003197 The cytochrome bd type terminal oxidases catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. The 14 kDa (or VI) subunit of the complex is not directly involved in electron transfer, but has a role in assembly of the complex [].; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c; PDB: 3L74_F 3H1K_F 3L72_F 3H1L_S 3L71_S 3L70_S 3L73_F 3L75_F 1P84_G 3CXH_G ....
Probab=100.00 E-value=1.6e-48 Score=281.59 Aligned_cols=97 Identities=56% Similarity=0.941 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHhcchhhcccccccCCCC-ChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcccCCCcccCcccccCcc
Q psy18030 20 FRKYGALQKWAWEYSGFRKYGLYYDDLANE-TPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETR 98 (121)
Q Consensus 20 ~~~~~~~a~wy~n~sgyrk~GL~~DDL~~e-~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~~~~LPkeqwtk~eeD~~ 98 (121)
.+|+.|+++||+|++|||||||+||||++| ||+|+|||+|||+++.++|+|||+||+|||++|++||+|||||+|+|++
T Consensus 8 ~~~~~~~~~w~~n~~gyrk~GL~~DDl~~e~~~~v~eAl~RLp~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~e~d~~ 87 (105)
T PF02271_consen 8 SKFFKPLAKWYYNASGYRKYGLRYDDLLNEEDPDVQEALRRLPPDEQYDRNFRIKRAMQLSLKHQYLPKEQWTKPEEDVP 87 (105)
T ss_dssp HHHHHHHHHHHHHHHGGGGGT--GGGGS---SHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHT----GGGS--GGGS--
T ss_pred HHHHHHHHHHHHHhcchhhhcccHHhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHHccCcccchH
Confidence 478999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHH
Q psy18030 99 YLKPYIEQVEKEFKEKEE 116 (121)
Q Consensus 99 YL~Pyi~eVe~E~~Er~~ 116 (121)
||+|||+||++|.+||++
T Consensus 88 YL~p~i~ev~~E~~Er~e 105 (105)
T PF02271_consen 88 YLQPYIEEVEKERKEREE 105 (105)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999986
No 2
>KOG3440|consensus
Probab=100.00 E-value=7.5e-48 Score=283.76 Aligned_cols=103 Identities=50% Similarity=0.883 Sum_probs=100.3
Q ss_pred hhhhHHHHHHHHHHHhcchhhcccccccCCCC-ChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcccCCCcccCcccccC
Q psy18030 18 SGFRKYGALQKWAWEYSGFRKYGLYYDDLANE-TPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDE 96 (121)
Q Consensus 18 ~~~~~~~~~a~wy~n~sgyrk~GL~~DDL~~e-~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~~~~LPkeqwtk~eeD 96 (121)
.+.+++.|+.+|++|++|||+|||+||||+.| |++|+|||+|||.+++|+|++||+|||||||+|++|||+||||++||
T Consensus 11 ~~~k~~~~~~~~~~nl~g~rkyGL~~DDl~~e~n~dvkeAlrRLPr~~~d~R~~Ri~RA~~Lsm~h~~LPk~ewtk~eed 90 (122)
T KOG3440|consen 11 VLGKLFLPLRKWAYNLSGFRKYGLRYDDLYYEENEDVKEALRRLPRELYDARNYRIKRAMDLSMTHEILPKEEWTKYEED 90 (122)
T ss_pred cchHHHHHHHHHHHHHhhhhhhCccccccccccCHHHHHHHHHCcHHHHHHHHHHHHHHHHHhhhcccCCHHHhhcccch
Confidence 35589999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHhccc
Q psy18030 97 TRYLKPYIEQVEKEFKEKEEWGKL 120 (121)
Q Consensus 97 ~~YL~Pyi~eVe~E~~Er~~~d~~ 120 (121)
++||+|||.||++|++||++|++.
T Consensus 91 ~~YL~pyL~ev~~ErkERee~~~l 114 (122)
T KOG3440|consen 91 VKYLEPYLAEVEAERKEREELDAL 114 (122)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999975
No 3
>KOG1673|consensus
Probab=73.42 E-value=3.5 Score=33.20 Aligned_cols=38 Identities=24% Similarity=0.535 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcchhh------cccccccCCCCChHHHHHHhc
Q psy18030 22 KYGALQKWAWEYSGFRK------YGLYYDDLANETPVVEEALRR 59 (121)
Q Consensus 22 ~~~~~a~wy~n~sgyrk------~GL~~DDL~~e~~~V~eALrR 59 (121)
-++.+..||..+-|+|| .|-+||+++.=.|+.|+-+.|
T Consensus 107 TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~ 150 (205)
T KOG1673|consen 107 TLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISR 150 (205)
T ss_pred HHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHH
Confidence 47899999999999998 599999998888888888765
No 4
>COG0568 RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]
Probab=68.33 E-value=3.3 Score=35.65 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhcchhhcccccccCCCC-ChHHHHHHhcCCHHH
Q psy18030 21 RKYGALQKWAWEYSGFRKYGLYYDDLANE-TPVVEEALRRLPEKL 64 (121)
Q Consensus 21 ~~~~~~a~wy~n~sgyrk~GL~~DDL~~e-~~~V~eALrRLP~~~ 64 (121)
+++..||+ +|..+||-+-|||.| |.-+.+|+.+..++-
T Consensus 113 RlVvsIAk------~Y~~rGL~~~DLIQEGniGLmkAVekFdp~r 151 (342)
T COG0568 113 RLVVSIAK------KYTGRGLPFLDLIQEGNIGLMKAVEKFDPEK 151 (342)
T ss_pred HHHHHHHH------HhhcCCCcHHHHHhcccHHHHHHHHhcCccc
Confidence 34555555 789999999999999 999999999988754
No 5
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=67.84 E-value=8.3 Score=31.17 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=32.7
Q ss_pred HHHHHHHHhcchhhcccccccCCCCChHHHHHHhc---CCHHHHH
Q psy18030 25 ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRR---LPEKLKN 66 (121)
Q Consensus 25 ~~a~wy~n~sgyrk~GL~~DDL~~e~~~V~eALrR---LP~~~~~ 66 (121)
.+.+-|.-+..|+-.|+-.||....|+..++|+.+ ||+++..
T Consensus 157 ~vR~vf~~~~~yr~~gvtR~D~~~~n~~a~~Aie~~G~lp~dIL~ 201 (216)
T TIGR03761 157 LIRRLFGLAQRYRHSGVTRDDFAANNARARKAIERFGELPQDILE 201 (216)
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHhCCHHHHHHHHHcCCCCHHHHc
Confidence 44455555567999999999999889999999988 5666543
No 6
>PRK07122 RNA polymerase sigma factor SigF; Reviewed
Probab=46.95 E-value=44 Score=26.79 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=37.1
Q ss_pred hhhcccccccCCCC-ChHHHHHHhcCCHHH-----HHHHHHHHHHHHhhhhccc
Q psy18030 36 FRKYGLYYDDLANE-TPVVEEALRRLPEKL-----KNERHFRQLRAVQLNIQKS 83 (121)
Q Consensus 36 yrk~GL~~DDL~~e-~~~V~eALrRLP~~~-----~~~R~~Ri~RA~qlS~~~~ 83 (121)
|...|+-.|||+.+ +--+-+|+.+..+.- .| =.++|+-++.-.+.+.
T Consensus 60 y~~~g~~~~DLiQeG~iGLi~AierFDp~~G~~FsTY-A~~~Irg~I~~~lr~~ 112 (264)
T PRK07122 60 FDGRGEPRDDLVQVARVGLVNAVNRFDVETGSDFVSF-AVPTIMGEVRRHFRDN 112 (264)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHcCCCCCCChHHH-HHHHHHHHHHHHHHHc
Confidence 55669999999999 888999999998752 44 4568888887777654
No 7
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=41.69 E-value=28 Score=27.71 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcchhhcccccccCCCCChHHHHHHhcCC
Q psy18030 24 GALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLP 61 (121)
Q Consensus 24 ~~~a~wy~n~sgyrk~GL~~DDL~~e~~~V~eALrRLP 61 (121)
..+.+-|.-+-+|+-.|+.++|+...|+..++|+.++.
T Consensus 158 ~~iR~v~~~~~~yr~~gvtR~D~~~~n~~~~~A~~~~G 195 (217)
T PF08900_consen 158 RAIRRVFGLAQRYRHSGVTRDDFAANNARAQAAIERFG 195 (217)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHhcCHHHHHHHHHcC
Confidence 34455555556799999999999988999999987753
No 8
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=32.45 E-value=55 Score=25.39 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=35.6
Q ss_pred hhhcccccccCCCC-ChHHHHHHhcCCHHH-----HHHHHHHHHHHHhhhhcccC
Q psy18030 36 FRKYGLYYDDLANE-TPVVEEALRRLPEKL-----KNERHFRQLRAVQLNIQKSI 84 (121)
Q Consensus 36 yrk~GL~~DDL~~e-~~~V~eALrRLP~~~-----~~~R~~Ri~RA~qlS~~~~~ 84 (121)
|...|+-.+||+.| +--+-+|+.+..++- .| =..+|+.|+.-.+..+.
T Consensus 20 ~~~~~~~~eDLiQeG~igL~~A~~~fd~~~g~~FstY-A~~~Ir~~I~~~l~~~~ 73 (238)
T TIGR02393 20 YTNRGLSFLDLIQEGNIGLMKAVEKFDYRKGYKFSTY-ATWWIRQAITRAIADQA 73 (238)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhCCCCCCChHHH-hHHHHHHHHHHHHHHcC
Confidence 44558999999999 888999999997632 33 34788888766665543
No 9
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=28.60 E-value=66 Score=20.25 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHhh
Q psy18030 61 PEKLKNERHFRQLRAVQL 78 (121)
Q Consensus 61 P~~~~~~R~~Ri~RA~ql 78 (121)
++.+.--|++|++||...
T Consensus 18 ~ESELskr~rrLIRaa~k 35 (44)
T PF08134_consen 18 TESELSKRIRRLIRAARK 35 (44)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 356777899999999753
No 10
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=27.39 E-value=56 Score=29.54 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=34.8
Q ss_pred hhhcccccccCCCC-ChHHHHHHhcCCHHH-----HHHHHHHHHHHHhhhhccc
Q psy18030 36 FRKYGLYYDDLANE-TPVVEEALRRLPEKL-----KNERHFRQLRAVQLNIQKS 83 (121)
Q Consensus 36 yrk~GL~~DDL~~e-~~~V~eALrRLP~~~-----~~~R~~Ri~RA~qlS~~~~ 83 (121)
|+..||-++||+.| |--+-+|+.+..+.- .|+ .++|+.|+.-++..+
T Consensus 400 y~~~gl~~~DLiQeG~iGL~~Av~kfd~~~G~~FstYA-~~wIr~aI~~~i~~~ 452 (619)
T PRK05658 400 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA-TWWIRQAITRSIADQ 452 (619)
T ss_pred HhhCCCCHHHHHHHHHHHHHHHHHhcCccCCCchHHHh-HHHHHHHHHHHHHHc
Confidence 55569999999999 888999999887532 333 567777777666554
No 11
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=27.13 E-value=42 Score=30.33 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=33.7
Q ss_pred hhhcccccccCCCC-ChHHHHHHhcCCHHH----HHHHHHHHHHHHhhhhcc
Q psy18030 36 FRKYGLYYDDLANE-TPVVEEALRRLPEKL----KNERHFRQLRAVQLNIQK 82 (121)
Q Consensus 36 yrk~GL~~DDL~~e-~~~V~eALrRLP~~~----~~~R~~Ri~RA~qlS~~~ 82 (121)
|...|+-++||+.| +--+-+|+.+..+.- .--=.++|+.|+.-.+..
T Consensus 291 Y~~~Gl~~eDLIQEGnIGLikAvekFDp~rG~rFSTYA~wWIRqaI~raI~d 342 (509)
T PRK05901 291 YTNRGLSFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 342 (509)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhCcccCCCchhhhHHHHHHHHHHHHHH
Confidence 45669999999999 888999999987643 222356677776555443
No 12
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=26.83 E-value=1.7e+02 Score=20.13 Aligned_cols=67 Identities=21% Similarity=0.338 Sum_probs=42.7
Q ss_pred HHHHhhhhhH--HHHHHH-HHHHhcc-hhhc-ccccccCCCC-ChHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Q psy18030 13 WAWEYSGFRK--YGALQK-WAWEYSG-FRKY-GLYYDDLANE-TPVVEEALRRLPEKLKNERHFRQLRAVQLN 79 (121)
Q Consensus 13 ~~~~~~~~~~--~~~~a~-wy~n~sg-yrk~-GL~~DDL~~e-~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS 79 (121)
|.+|++-|.+ +-||+- ||+|..- |.++ +-..+-+++. ++...+.|.++=.+....|..||.++++-.
T Consensus 4 ~~LEvfKfg~Yv~fPI~~~~~fN~pe~f~~~v~~~~~~~~ppe~~~~~~ele~~~~~~~~k~~~rl~~~~e~~ 76 (80)
T PF09803_consen 4 WNLEVFKFGMYVFFPIGMFYYFNQPEWFEKWVIKRKRELYPPENEEIREELEEFKEELRKKREERLLREMEEE 76 (80)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCcHHHHHHhHHHhcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554442 347763 3344332 4433 3344555544 788888999888899999999999988743
No 13
>PF08707 PriCT_2: Primase C terminal 2 (PriCT-2) ; InterPro: IPR014819 This alpha helical domain is found at the C-terminal of primases. ; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=24.74 E-value=54 Score=21.57 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=17.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Q psy18030 52 VVEEALRRLPEKLKNERHFRQLRA 75 (121)
Q Consensus 52 ~V~eALrRLP~~~~~~R~~Ri~RA 75 (121)
+|++||+-||++...+|.-=++.+
T Consensus 1 ~~~~~L~~i~~~~~~~y~~W~~vg 24 (78)
T PF08707_consen 1 DIREALDHIPPDIADDYDDWIRVG 24 (78)
T ss_pred CHHHHHhcCCcccccCHHHHHHHH
Confidence 478999999998655555555444
No 14
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=22.13 E-value=56 Score=16.68 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=8.0
Q ss_pred HHHHHHhhhhc
Q psy18030 71 RQLRAVQLNIQ 81 (121)
Q Consensus 71 Ri~RA~qlS~~ 81 (121)
-|.+|+.+|+.
T Consensus 6 ~L~~Al~~S~~ 16 (18)
T PF02809_consen 6 DLQRALEMSLE 16 (18)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhc
Confidence 46788888874
No 15
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=21.61 E-value=39 Score=20.58 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=12.9
Q ss_pred ChHHHHHHhcCCHHHH
Q psy18030 50 TPVVEEALRRLPEKLK 65 (121)
Q Consensus 50 ~~~V~eALrRLP~~~~ 65 (121)
..+|-++|++||..++
T Consensus 23 ~~~vl~~L~~lP~~~Y 38 (44)
T PF11387_consen 23 PDDVLDALERLPDREY 38 (44)
T ss_pred CHHHHHHHHHCCccCC
Confidence 4688999999997653
Done!