Query psy18030
Match_columns 121
No_of_seqs 112 out of 216
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:42:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_F Ubiquinol-cytochrome C 100.0 1.3E-51 4.4E-56 299.1 11.5 102 19-120 9-110 (110)
2 3cx5_G Cytochrome B-C1 complex 100.0 1.2E-49 4.2E-54 294.3 12.1 101 20-120 21-122 (126)
3 2klz_A Ataxin-3; UIM, ubiquiti 38.3 12 0.00041 23.5 1.2 33 50-83 7-41 (52)
4 1q0v_A Hydrophilic protein; ha 24.4 26 0.00088 23.7 1.1 11 72-82 15-25 (81)
5 1gng_X Frattide, glycogen synt 18.4 29 0.001 20.5 0.3 11 51-61 24-34 (39)
6 4ayb_K DNA-directed RNA polyme 17.9 1.6E+02 0.0054 20.2 4.0 44 39-85 1-50 (95)
7 4afj_X Proto-oncogene FRAT1; t 15.5 56 0.0019 18.3 1.0 12 51-62 15-26 (30)
8 3tek_A Thermodbp-single strand 14.6 1.1E+02 0.0036 22.6 2.5 30 18-48 88-117 (148)
9 1tty_A Sigma-A, RNA polymerase 13.2 1.4E+02 0.0049 18.4 2.6 16 50-65 9-24 (87)
10 1z23_A CRK-associated substrat 10.9 1.1E+02 0.0037 22.9 1.6 47 60-109 7-59 (163)
No 1
>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ...
Probab=100.00 E-value=1.3e-51 Score=299.07 Aligned_cols=102 Identities=47% Similarity=0.863 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHHhcchhhcccccccCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcccCCCcccCcccccCcc
Q psy18030 19 GFRKYGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETR 98 (121)
Q Consensus 19 ~~~~~~~~a~wy~n~sgyrk~GL~~DDL~~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~~~~LPkeqwtk~eeD~~ 98 (121)
+.+|+.|+++||+|+||||||||+|||||+|+|+|+|||+|||++++++|+|||+||+|||++|++||++||||+|+|++
T Consensus 9 ~~~~~~~~~~w~~n~sg~rk~GL~~DDl~~e~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~e~d~~ 88 (110)
T 1pp9_F 9 SSRWLEGIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKS 88 (110)
T ss_dssp ---CHHHHHHHHHHHHCGGGGTCCGGGGSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGGCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHhccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHHccCCccchH
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhccc
Q psy18030 99 YLKPYIEQVEKEFKEKEEWGKL 120 (121)
Q Consensus 99 YL~Pyi~eVe~E~~Er~~~d~~ 120 (121)
||+|||+||++|++||++||++
T Consensus 89 YL~p~i~ev~~E~~Er~~~d~~ 110 (110)
T 1pp9_F 89 YLEPYLKEVIRERKEREEWAKK 110 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999985
No 2
>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G*
Probab=100.00 E-value=1.2e-49 Score=294.25 Aligned_cols=101 Identities=35% Similarity=0.648 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHhcchhhcccccccCCCC-ChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcccCCCcccCcccccCcc
Q psy18030 20 FRKYGALQKWAWEYSGFRKYGLYYDDLANE-TPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETR 98 (121)
Q Consensus 20 ~~~~~~~a~wy~n~sgyrk~GL~~DDL~~e-~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~~~~LPkeqwtk~eeD~~ 98 (121)
.+|+.|+++||+|++|||||||+||||++| +|+|+|||+|||+++.++|+|||+||+|||++|++||+|||||+|+|++
T Consensus 21 ~~~~~p~~~w~~~~~g~rk~GL~~DDl~~e~~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~e~d~~ 100 (126)
T 3cx5_G 21 SKLCVPVANQFINLAGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKAQEDVP 100 (126)
T ss_dssp HHHHHHHHHHHHHHHCGGGGTCCGGGGSCCCSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGGCCC
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhccCCHHHccCCCcchH
Confidence 377899999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhccc
Q psy18030 99 YLKPYIEQVEKEFKEKEEWGKL 120 (121)
Q Consensus 99 YL~Pyi~eVe~E~~Er~~~d~~ 120 (121)
||+|||+||++|++||++||+.
T Consensus 101 YL~p~i~ev~~E~~Er~~ld~~ 122 (126)
T 3cx5_G 101 YLLPYILEAEAAAKEKDELDNI 122 (126)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999984
No 3
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=38.33 E-value=12 Score=23.51 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred ChHHHHHHhcCCHHHHH--HHHHHHHHHHhhhhccc
Q psy18030 50 TPVVEEALRRLPEKLKN--ERHFRQLRAVQLNIQKS 83 (121)
Q Consensus 50 ~~~V~eALrRLP~~~~~--~R~~Ri~RA~qlS~~~~ 83 (121)
.++.|+||. |...+.+ +----++||+||||+..
T Consensus 7 EedlqrALa-lSRQE~dmEDeeadLrrAiqLSmQGs 41 (52)
T 2klz_A 7 EEDLQRALA-LSRQEIDMEDEEADLRRAIQLSMQGS 41 (52)
T ss_dssp HHHHHHHHH-HHHHHHCCSSSHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHH-HHHHHhccchhHHHHHHHHHHHhhcc
Confidence 467888875 2222211 11224889999999854
No 4
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=24.45 E-value=26 Score=23.68 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=9.6
Q ss_pred HHHHHhhhhcc
Q psy18030 72 QLRAVQLNIQK 82 (121)
Q Consensus 72 i~RA~qlS~~~ 82 (121)
|+||++|||+-
T Consensus 15 LkrAieLSL~E 25 (81)
T 1q0v_A 15 IRKAIELSLKE 25 (81)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhHHH
Confidence 89999999963
No 5
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=18.40 E-value=29 Score=20.54 Aligned_cols=11 Identities=45% Similarity=0.767 Sum_probs=8.6
Q ss_pred hHHHHHHhcCC
Q psy18030 51 PVVEEALRRLP 61 (121)
Q Consensus 51 ~~V~eALrRLP 61 (121)
--++||++||-
T Consensus 24 ~LIkEAVrRlq 34 (39)
T 1gng_X 24 NLIKEAVRRLH 34 (39)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 45799999974
No 6
>4ayb_K DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_I 4b1o_K 4b1p_I 2waq_K 2wb1_I 2pmz_K 3hkz_K
Probab=17.88 E-value=1.6e+02 Score=20.16 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=22.6
Q ss_pred cccccccCCCCChHHHHHH-----hcCCHHHHHHHHHHH-HHHHhhhhcccCC
Q psy18030 39 YGLYYDDLANETPVVEEAL-----RRLPEKLKNERHFRQ-LRAVQLNIQKSIL 85 (121)
Q Consensus 39 ~GL~~DDL~~e~~~V~eAL-----rRLP~~~~~~R~~Ri-~RA~qlS~~~~~L 85 (121)
+||-.|+++.++-...+.. .+|.. |++.+=| .||.|+|+-...|
T Consensus 1 ~~~~~dg~i~~~l~~~~~~~~~~~~kLTK---YEkaRIiG~RA~Qis~GA~~~ 50 (95)
T 4ayb_K 1 MGLERDGILSQDLHFNEVFVSLWQNKLTR---YEIARVISARALQLAMGAPAL 50 (95)
T ss_dssp ----------CCSHHHHHHHHHHTSSCCH---HHHHHHHHHHHHHHHTCCCCS
T ss_pred CCccccCeecchhhccchhhhcccccccH---HHHHHHHHHHHHHHHCCCCce
Confidence 5888888888855555555 35664 5555433 6999999998886
No 7
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=15.53 E-value=56 Score=18.31 Aligned_cols=12 Identities=42% Similarity=0.709 Sum_probs=9.1
Q ss_pred hHHHHHHhcCCH
Q psy18030 51 PVVEEALRRLPE 62 (121)
Q Consensus 51 ~~V~eALrRLP~ 62 (121)
--++||++||-.
T Consensus 15 ~likeAvrrl~s 26 (30)
T 4afj_X 15 NLIKEAVRRLHS 26 (30)
T ss_dssp CHHHHHHHHTCC
T ss_pred chHHHHHHHHHH
Confidence 357899999853
No 8
>3tek_A Thermodbp-single stranded DNA binding protein; leucine zipper; 2.00A {Thermoproteus tenax}
Probab=14.57 E-value=1.1e+02 Score=22.64 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHHHHHhcchhhcccccccCCC
Q psy18030 18 SGFRKYGALQKWAWEYSGFRKYGLYYDDLAN 48 (121)
Q Consensus 18 ~~~~~~~~~a~wy~n~sgyrk~GL~~DDL~~ 48 (121)
++.-++..+.+|++|-.- -||||-.-|++.
T Consensus 88 ssre~Fd~~K~WFFnE~~-pky~l~kGDiFm 117 (148)
T 3tek_A 88 TSRELFDGLKKWFFEEAV-PRYNLERGDIFM 117 (148)
T ss_dssp HHHHHHHHHHHHHHHTHH-HHHTCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhhh-hhhCCCcCcEEE
Confidence 344578899999999875 588999988753
No 9
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=13.25 E-value=1.4e+02 Score=18.40 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=12.2
Q ss_pred ChHHHHHHhcCCHHHH
Q psy18030 50 TPVVEEALRRLPEKLK 65 (121)
Q Consensus 50 ~~~V~eALrRLP~~~~ 65 (121)
...+.+||..||+.+.
T Consensus 9 ~~~l~~~l~~L~~~er 24 (87)
T 1tty_A 9 REELEKVLKTLSPREA 24 (87)
T ss_dssp CSHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHhCCHHHH
Confidence 4678888888887654
No 10
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=10.85 E-value=1.1e+02 Score=22.92 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHHhhhhcccCCC------cccCcccccCccChHHHHHHHHH
Q psy18030 60 LPEKLKNERHFRQLRAVQLNIQKSILP------KDQWTKYEDETRYLKPYIEQVEK 109 (121)
Q Consensus 60 LP~~~~~~R~~Ri~RA~qlS~~~~~LP------keqwtk~eeD~~YL~Pyi~eVe~ 109 (121)
|..+...++..|+...+.-|+.+...= ...|..+. .||.|+|.+|..
T Consensus 7 Ldld~A~E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~---~~le~~i~~i~~ 59 (163)
T 1z23_A 7 LELEVAVETLARLQQGVSTTVAHLLDLVGSASGPGGWRSTS---EPQEPPVQDLKA 59 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCSS---SSCCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCccCcc---cccchhHHHHHH
Confidence 567777788888888888777765432 67899883 367888888764
Done!