RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18030
(121 letters)
>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex
(Ubiquinol-cytochrome c reductase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 125 bits (317), Expect = 3e-39
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 9 ALQKWAWEYSGFRKY-GALQKWAWEYSGFRKYGLYYDDLANET-PVVEEALRRLPEKLKN 66
+ + + K + +G++K GL +DDL E P+++ ALRRLPE
Sbjct: 8 RIGDYILKSPVLSKLCVPVANQFINLAGYKKLGLKFDDLIAEENPIMQTALRRLPEDESY 67
Query: 67 ERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGKL 120
R +R +RA Q + +LP+++W K +++ YL PYI + E KEK+E +
Sbjct: 68 ARAYRIIRAHQTELTHHLLPRNEWIKAQEDVPYLLPYILEAEAAAKEKDELDNI 121
>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex
(Ubiquinol-cytochrome c reductase) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 99
Score = 124 bits (313), Expect = 5e-39
Identities = 47/95 (49%), Positives = 70/95 (73%)
Query: 25 ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 84
++KW + +GF K GL DD +E V+EA+RRLPE L ++R FR RA+ L++++ I
Sbjct: 4 GIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQI 63
Query: 85 LPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 119
LPK+QWTKYE++ YL+PY+++V +E KE+EEW K
Sbjct: 64 LPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 98
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum
cardiophyllum) [TaxId: 160510]}
Length = 360
Score = 26.5 bits (57), Expect = 0.99
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 54 EEALRRLPEKLKNERHFRQLRA 75
EEAL+R + L + + R +A
Sbjct: 339 EEALKRFAKLLSDRKKLRANKA 360
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 25.7 bits (56), Expect = 1.5
Identities = 13/52 (25%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 68 RHFRQ--LRAVQLNIQKSILPKDQWTKYEDETRYL-KPYIEQVEKEFKEKEE 116
R+ R+ L+ ++ + ++ ++P+D + E+E + L +IE++++ F+ K+E
Sbjct: 128 RNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKE 179
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 25.3 bits (55), Expect = 2.1
Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 50 TPVVEEALRRLPEKLKN--ERHFRQLRAVQLNIQKSI--------LPKDQWTKYEDETRY 99
P+ EE + L + ++ E+ +R V+ + + + +D + +D+ +
Sbjct: 103 PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQK 162
Query: 100 L-KPYIEQVEKEFKEKEE 116
L I+++E +KE
Sbjct: 163 LTDAAIKKIEAALADKEA 180
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 24.9 bits (54), Expect = 2.8
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 50 TPVVEEALRRLPEKLKN--ERHFRQLRAVQLNIQKSI--------LPKDQWTKYEDETRY 99
P+ EE + L ++ E +R ++ + L +D+ + E E +
Sbjct: 104 PPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQK 163
Query: 100 L-KPYIEQVEKEFKEKEE 116
+ +I + ++ ++KE+
Sbjct: 164 ITDEFIAKADQLAEKKEQ 181
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 24.6 bits (53), Expect = 4.2
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 79 NIQKSILPKDQ-WTKYEDETRYLKPYIEQVEKEFKEKEE 116
NI+ +++ +DQ E ++ Y+ ++EKE +E E+
Sbjct: 204 NIELAVMRRDQSLKILNPEE--IEKYVAEIEKEKEENEK 240
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 190
Score = 24.0 bits (51), Expect = 5.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 81 QKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGKL 120
+ S L KD T + T + + I+Q K F G+L
Sbjct: 4 KTSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQL 43
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 185
Score = 23.8 bits (51), Expect = 6.3
Identities = 6/33 (18%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 85 LPKDQWTKYEDETRYL-KPYIEQVEKEFKEKEE 116
+ +D+ K ++E + L ++++++ KE+
Sbjct: 148 ISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEK 180
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex
aeolicus [TaxId: 63363]}
Length = 184
Score = 23.8 bits (51), Expect = 6.5
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 65 KNERHFRQLRAVQLNIQKSI--LPKDQWTKYEDETRYL-KPYIEQVEKEFKEKEE 116
+ R +R + + + + +D+ + + + L YI+++ K + KE+
Sbjct: 125 EARVRVRNVRREAKEMIEELEGISEDEKKRALERLQKLTDKYIDEINKLMEAKEK 179
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 23.8 bits (50), Expect = 7.0
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 62 EKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEW 117
+ +RH R + + L ++ + D YL V + E + +
Sbjct: 392 RAVAEQRHLRAV-LGDEPQVSAELSGEELDRLLDPAHYLGQARVWVARAVSEHQRF 446
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 23.9 bits (50), Expect = 7.6
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 52 VVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEF 111
VVE A + + ++H + + Q++ K Q + YL +Q++
Sbjct: 386 VVEAACK---TAVAEQKHLKDI-ISQVDEVKQYFNPSQLDEIFKPESYLGNIQDQIDAVL 441
Query: 112 KE 113
+E
Sbjct: 442 QE 443
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 183
Score = 23.4 bits (50), Expect = 8.0
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 82 KSILPKDQWTKYEDETRYL-KPYIEQVEKEFKEKEE 116
+ +D+ + E + Y+ Q+++ K KE
Sbjct: 144 EGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEG 179
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.416
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 514,792
Number of extensions: 23665
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 29
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)