Query psy18031
Match_columns 136
No_of_seqs 110 out of 209
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 20:43:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_F Ubiquinol-cytochrome C 100.0 7.2E-51 2.5E-55 301.4 11.1 103 33-135 8-110 (110)
2 3cx5_G Cytochrome B-C1 complex 100.0 2.1E-49 7E-54 299.2 12.1 104 32-135 18-122 (126)
3 2klz_A Ataxin-3; UIM, ubiquiti 37.3 12 0.00041 24.2 1.1 33 65-98 7-41 (52)
4 3tek_A Thermodbp-single strand 30.7 25 0.00085 26.7 2.1 36 27-63 82-117 (148)
5 1q0v_A Hydrophilic protein; ha 20.7 33 0.0011 23.8 1.0 11 87-97 15-25 (81)
6 4ayb_K DNA-directed RNA polyme 15.9 1.8E+02 0.0063 20.4 4.0 45 54-101 1-51 (95)
7 1gng_X Frattide, glycogen synt 14.8 39 0.0013 20.6 0.2 11 66-76 24-34 (39)
8 1tty_A Sigma-A, RNA polymerase 13.6 1.4E+02 0.0047 18.9 2.7 16 65-80 9-24 (87)
9 4afj_X Proto-oncogene FRAT1; t 12.5 74 0.0025 18.4 0.9 11 67-77 16-26 (30)
10 1z23_A CRK-associated substrat 11.0 89 0.0031 24.0 1.3 47 75-124 7-59 (163)
No 1
>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ...
Probab=100.00 E-value=7.2e-51 Score=301.36 Aligned_cols=103 Identities=46% Similarity=0.825 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHhccccccCcccccCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcCcCCCcccCcCcccCc
Q psy18031 33 IFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDET 112 (136)
Q Consensus 33 ~~~~~~~p~a~wy~n~sgyrk~GL~yDDLl~E~p~VqeALrRLP~~e~~~R~fRi~RA~qlSl~h~~LPkeqWtk~EeD~ 112 (136)
.+.+|+.|+++||+|+||||||||+|||||+|+|+|+|||+|||+++.++|+|||+||+|||++|++|||+||||+|+|+
T Consensus 8 ~~~~~~~~~~~w~~n~sg~rk~GL~~DDl~~e~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~e~d~ 87 (110)
T 1pp9_F 8 ASSRWLEGIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDK 87 (110)
T ss_dssp ----CHHHHHHHHHHHHCGGGGTCCGGGGSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHhccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHHccCCccch
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHhccc
Q psy18031 113 RYLKPYIEQVEKEFKEKEEWGKL 135 (136)
Q Consensus 113 ~YL~PyI~EVe~E~~ER~~~d~~ 135 (136)
+||+|||+||++|++||++||++
T Consensus 88 ~YL~p~i~ev~~E~~Er~~~d~~ 110 (110)
T 1pp9_F 88 SYLEPYLKEVIRERKEREEWAKK 110 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999985
No 2
>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G*
Probab=100.00 E-value=2.1e-49 Score=299.19 Aligned_cols=104 Identities=34% Similarity=0.646 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHHHHhccccccCcccccCCCC-ChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcCcCCCcccCcCccc
Q psy18031 32 LIFVYISGALQKWAWEYSGFRKYGLYYDDLANE-TPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYED 110 (136)
Q Consensus 32 ~~~~~~~~p~a~wy~n~sgyrk~GL~yDDLl~E-~p~VqeALrRLP~~e~~~R~fRi~RA~qlSl~h~~LPkeqWtk~Ee 110 (136)
.+..+|+.|+++||+|++|||||||+||||++| +|+|+|||+|||+++.++|+|||+||+|||++|++||||||||+||
T Consensus 18 p~l~~~~~p~~~w~~~~~g~rk~GL~~DDl~~e~~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~e~ 97 (126)
T 3cx5_G 18 PVLSKLCVPVANQFINLAGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKAQE 97 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGTCCGGGGSCCCSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccHHhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhccCCHHHccCCCc
Confidence 566899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHHHHHHHHHHhccc
Q psy18031 111 ETRYLKPYIEQVEKEFKEKEEWGKL 135 (136)
Q Consensus 111 D~~YL~PyI~EVe~E~~ER~~~d~~ 135 (136)
|++||+|||+||++|++||++||+.
T Consensus 98 d~~YL~p~i~ev~~E~~Er~~ld~~ 122 (126)
T 3cx5_G 98 DVPYLLPYILEAEAAAKEKDELDNI 122 (126)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999984
No 3
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=37.30 E-value=12 Score=24.17 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=20.3
Q ss_pred ChHHHHHHhcCCHHHHH--HHHHHHHHHHhhhhcCc
Q psy18031 65 TPVVEEALRRLPEKLKN--ERHFRQLRAVQLNIQKS 98 (136)
Q Consensus 65 ~p~VqeALrRLP~~e~~--~R~fRi~RA~qlSl~h~ 98 (136)
.++.|+||. |+.++.+ +----++||+||||+..
T Consensus 7 EedlqrALa-lSRQE~dmEDeeadLrrAiqLSmQGs 41 (52)
T 2klz_A 7 EEDLQRALA-LSRQEIDMEDEEADLRRAIQLSMQGS 41 (52)
T ss_dssp HHHHHHHHH-HHHHHHCCSSSHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHH-HHHHHhccchhHHHHHHHHHHHhhcc
Confidence 568888875 2222221 11225889999999854
No 4
>3tek_A Thermodbp-single stranded DNA binding protein; leucine zipper; 2.00A {Thermoproteus tenax}
Probab=30.69 E-value=25 Score=26.73 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=29.1
Q ss_pred cccchhhHHHHHHHHHHHHHHhccccccCcccccCCC
Q psy18031 27 SSKTHLIFVYISGALQKWAWEYSGFRKYGLYYDDLAN 63 (136)
Q Consensus 27 s~~~~~~~~~~~~p~a~wy~n~sgyrk~GL~yDDLl~ 63 (136)
|+++--...-++..+.+|+||-+- -||||-.-|+..
T Consensus 82 s~~Fr~ssre~Fd~~K~WFFnE~~-pky~l~kGDiFm 117 (148)
T 3tek_A 82 SEKFRETSRELFDGLKKWFFEEAV-PRYNLERGDIFM 117 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTHH-HHHTCCTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-hhhCCCcCcEEE
Confidence 566666667889999999999876 788999888753
No 5
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=20.67 E-value=33 Score=23.77 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=9.6
Q ss_pred HHHHHhhhhcC
Q psy18031 87 QLRAVQLNIQK 97 (136)
Q Consensus 87 i~RA~qlSl~h 97 (136)
|+||++||++-
T Consensus 15 LkrAieLSL~E 25 (81)
T 1q0v_A 15 IRKAIELSLKE 25 (81)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhHHH
Confidence 89999999964
No 6
>4ayb_K DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_I 4b1o_K 4b1p_I 2waq_K 2wb1_I 2pmz_K 3hkz_K
Probab=15.86 E-value=1.8e+02 Score=20.37 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=22.9
Q ss_pred cCcccccCCCCChHHHHHH-----hcCCHHHHHHHHHHH-HHHHhhhhcCcCCC
Q psy18031 54 YGLYYDDLANETPVVEEAL-----RRLPEKLKNERHFRQ-LRAVQLNIQKSILP 101 (136)
Q Consensus 54 ~GL~yDDLl~E~p~VqeAL-----rRLP~~e~~~R~fRi-~RA~qlSl~h~~LP 101 (136)
|||..|+++.++-...+.. .+|.. |+|.+=| .||.|+|+-...+=
T Consensus 1 ~~~~~dg~i~~~l~~~~~~~~~~~~kLTK---YEkaRIiG~RA~Qis~GA~~~I 51 (95)
T 4ayb_K 1 MGLERDGILSQDLHFNEVFVSLWQNKLTR---YEIARVISARALQLAMGAPALI 51 (95)
T ss_dssp ----------CCSHHHHHHHHHHTSSCCH---HHHHHHHHHHHHHHHTCCCCSS
T ss_pred CCccccCeecchhhccchhhhcccccccH---HHHHHHHHHHHHHHHCCCCceE
Confidence 5888888888755555554 35664 5555444 69999999988873
No 7
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=14.79 E-value=39 Score=20.59 Aligned_cols=11 Identities=45% Similarity=0.767 Sum_probs=8.4
Q ss_pred hHHHHHHhcCC
Q psy18031 66 PVVEEALRRLP 76 (136)
Q Consensus 66 p~VqeALrRLP 76 (136)
--++||++||-
T Consensus 24 ~LIkEAVrRlq 34 (39)
T 1gng_X 24 NLIKEAVRRLH 34 (39)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 35789999874
No 8
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=13.61 E-value=1.4e+02 Score=18.89 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=12.5
Q ss_pred ChHHHHHHhcCCHHHH
Q psy18031 65 TPVVEEALRRLPEKLK 80 (136)
Q Consensus 65 ~p~VqeALrRLP~~e~ 80 (136)
...+.+||..||+.+.
T Consensus 9 ~~~l~~~l~~L~~~er 24 (87)
T 1tty_A 9 REELEKVLKTLSPREA 24 (87)
T ss_dssp CSHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHhCCHHHH
Confidence 4678889999988764
No 9
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=12.47 E-value=74 Score=18.38 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.6
Q ss_pred HHHHHHhcCCH
Q psy18031 67 VVEEALRRLPE 77 (136)
Q Consensus 67 ~VqeALrRLP~ 77 (136)
-++||.+||-.
T Consensus 16 likeAvrrl~s 26 (30)
T 4afj_X 16 LIKEAVRRLHS 26 (30)
T ss_dssp HHHHHHHHTCC
T ss_pred hHHHHHHHHHH
Confidence 57899999853
No 10
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=11.03 E-value=89 Score=23.96 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHHhhhhcCcCCC------cccCcCcccCccChHHHHHHHHH
Q psy18031 75 LPEKLKNERHFRQLRAVQLNIQKSILP------KDQWTKYEDETRYLKPYIEQVEK 124 (136)
Q Consensus 75 LP~~e~~~R~fRi~RA~qlSl~h~~LP------keqWtk~EeD~~YL~PyI~EVe~ 124 (136)
|..+...++..|+...+.-|+.+...= ...|..+. .||.|+|.++..
T Consensus 7 Ldld~A~E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~---~~le~~i~~i~~ 59 (163)
T 1z23_A 7 LELEVAVETLARLQQGVSTTVAHLLDLVGSASGPGGWRSTS---EPQEPPVQDLKA 59 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCSS---SSCCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCccCcc---cccchhHHHHHH
Confidence 567778888889998888777665432 67899883 267778877754
Done!