RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18031
(136 letters)
>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex
(Ubiquinol-cytochrome c reductase) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 99
Score = 129 bits (325), Expect = 1e-40
Identities = 47/95 (49%), Positives = 70/95 (73%)
Query: 40 ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 99
++KW + +GF K GL DD +E V+EA+RRLPE L ++R FR RA+ L++++ I
Sbjct: 4 GIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQI 63
Query: 100 LPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
LPK+QWTKYE++ YL+PY+++V +E KE+EEW K
Sbjct: 64 LPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 98
>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex
(Ubiquinol-cytochrome c reductase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 129 bits (326), Expect = 2e-40
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 37 ISGALQKWAWEYSGFRKYGLYYDDLANET-PVVEEALRRLPEKLKNERHFRQLRAVQLNI 95
+ + +G++K GL +DDL E P+++ ALRRLPE R +R +RA Q +
Sbjct: 22 LCVPVANQFINLAGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTEL 81
Query: 96 QKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGKL 135
+LP+++W K +++ YL PYI + E KEK+E +
Sbjct: 82 THHLLPRNEWIKAQEDVPYLLPYILEAEAAAKEKDELDNI 121
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus
elongatus [TaxId: 32046]}
Length = 743
Score = 27.9 bits (62), Expect = 0.38
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 17/44 (38%)
Query: 20 ADVHDFESSKT---------------HL--IFVYISGALQKWAW 46
A HDF++ + HL +F+++SG A
Sbjct: 41 ALAHDFDTHTSDLEDISRKIFSAHFGHLAVVFIWLSGMYFHGAK 84
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus
elongatus [TaxId: 32046]}
Length = 739
Score = 27.1 bits (60), Expect = 0.80
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 18/45 (40%)
Query: 20 ADVHDFESSKT----------------HL--IFVYISGALQKWAW 46
A HDFES HL IF+++SG+L AW
Sbjct: 25 AMAHDFESHDGMTEENLYQKIFASHFGHLAIIFLWVSGSLFHVAW 69
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum
cardiophyllum) [TaxId: 160510]}
Length = 360
Score = 26.5 bits (57), Expect = 1.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 69 EEALRRLPEKLKNERHFRQLRA 90
EEAL+R + L + + R +A
Sbjct: 339 EEALKRFAKLLSDRKKLRANKA 360
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 24.7 bits (52), Expect = 4.9
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 67 VVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEF 126
VVE A + + ++H + + Q++ K Q + YL +Q++
Sbjct: 386 VVEAACK---TAVAEQKHLKDI-ISQVDEVKQYFNPSQLDEIFKPESYLGNIQDQIDAVL 441
Query: 127 KE 128
+E
Sbjct: 442 QE 443
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 24.6 bits (53), Expect = 4.9
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 94 NIQKSILPKDQ-WTKYEDETRYLKPYIEQVEKEFKEKEE 131
NI+ +++ +DQ E ++ Y+ ++EKE +E E+
Sbjct: 204 NIELAVMRRDQSLKILNPEE--IEKYVAEIEKEKEENEK 240
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 24.6 bits (53), Expect = 5.0
Identities = 13/52 (25%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 83 RHFRQ--LRAVQLNIQKSILPKDQWTKYEDETRYL-KPYIEQVEKEFKEKEE 131
R+ R+ L+ ++ + ++ ++P+D + E+E + L +IE++++ F+ K+E
Sbjct: 128 RNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKE 179
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 24.6 bits (52), Expect = 5.5
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 77 EKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEW 132
+ +RH R + + L ++ + D YL V + E + +
Sbjct: 392 RAVAEQRHLRAV-LGDEPQVSAELSGEELDRLLDPAHYLGQARVWVARAVSEHQRF 446
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 24.2 bits (52), Expect = 6.4
Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 65 TPVVEEALRRLPEKLKN--ERHFRQLRAVQLNIQKSI--------LPKDQWTKYEDETRY 114
P+ EE + L + ++ E+ +R V+ + + + +D + +D+ +
Sbjct: 103 PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQK 162
Query: 115 L-KPYIEQVEKEFKEKEE 131
L I+++E +KE
Sbjct: 163 LTDAAIKKIEAALADKEA 180
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis
sp. pcc 6803 [TaxId: 1148]}
Length = 279
Score = 24.1 bits (51), Expect = 7.6
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 13 EVLTHTSADVHDFESSKTHL-------IFVYISGALQKWA 45
E +T A++H +E + + + + +Y L++W
Sbjct: 31 ESITRIGAEIHGYEPTPSDIVKAQDADLILYNGMNLERWF 70
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 23.8 bits (51), Expect = 8.4
Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 31 HLIFVYISGALQKWAWEYSGFRKYGL--YYDDLANETPVVEEALRRLPEKLKNERHFRQL 88
L SGAL ++ G + + +++ + ++A+ + +L
Sbjct: 143 KLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMG-LSIESEL 201
Query: 89 RAVQLNIQKSILPKDQ--WTKYEDETRYLKPYIEQVEKEFKEKEE 131
NI+ + D + + E LKPY+E+ + +E +
Sbjct: 202 VP--ENIEVGYVKVDDRTFKEVSPEE--LKPYVERANERIRELLK 242
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 23.7 bits (51), Expect = 8.9
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 65 TPVVEEALRRLPEKLKN--ERHFRQLRAVQLNIQKSI--------LPKDQWTKYEDETRY 114
P+ EE + L ++ E +R ++ + L +D+ + E E +
Sbjct: 104 PPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQK 163
Query: 115 L-KPYIEQVEKEFKEKEE 131
+ +I + ++ ++KE+
Sbjct: 164 ITDEFIAKADQLAEKKEQ 181
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 190
Score = 23.6 bits (50), Expect = 8.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 96 QKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGKL 135
+ S L KD T + T + + I+Q K F G+L
Sbjct: 4 KTSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQL 43
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 22.9 bits (49), Expect = 9.3
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 86 RQLRAVQLNIQKSILPKDQWTKYEDET 112
+ A + + WT+ D
Sbjct: 17 ATVCANNSKVSSTGEKVVLWTREADRV 43
>d1nfpa_ c.1.16.2 (A:) Non-fluorescent flavoprotein (luxF, FP390)
{Photobacterium leiognathi [TaxId: 553611]}
Length = 228
Score = 23.5 bits (50), Expect = 9.6
Identities = 10/124 (8%), Positives = 30/124 (24%), Gaps = 2/124 (1%)
Query: 9 VRTYEVLTHTSADVHDFESSKTHLIFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVV 68
+A + + + + + Y Y +
Sbjct: 103 RIELLNHYQAAAAKFNVDIANVRHRLMLFVNVNDNPTQAKAELSIYLEDYLSYTQAETSI 162
Query: 69 EEALRRLPEKLKNE--RHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEF 126
+E + + H ++ N + + E++ + + ++V
Sbjct: 163 DEIINSNAAGNFDTCLHHVAEMAQGLNNKVDFLFCFESMKDQENKKSLMINFDKRVINYR 222
Query: 127 KEKE 130
KE
Sbjct: 223 KEHN 226
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,841
Number of extensions: 24973
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 30
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)