BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18032
(333 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|322787030|gb|EFZ13254.1| hypothetical protein SINV_10425 [Solenopsis invicta]
Length = 775
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 123/180 (68%), Positives = 146/180 (81%), Gaps = 4/180 (2%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKKKM---GGGFQSFGLGFEVLKGVLKRGYKIPTPIQ 64
D+ GF DP T+S ND+N + KKK+ GGFQS L F VLKG+LKRGYKIPTPIQ
Sbjct: 5 DLVGFADPN-TVSDNDENNEITNIKKKICKKSGGFQSMALSFPVLKGILKRGYKIPTPIQ 63
Query: 65 RKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124
RKTIPL LEGRDVVAMARTGSGKTACFLIP+ EKLK A +G RALILSPTRELALQT
Sbjct: 64 RKTIPLALEGRDVVAMARTGSGKTACFLIPLFEKLKARQAKAGARALILSPTRELALQTL 123
Query: 125 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KF+KELG+FT +++ +LGGDSMD+QF +H +PDI+VATPGRFLHI VEM+L+L +++Y
Sbjct: 124 KFIKELGRFTGFKASVILGGDSMDDQFNAIHGNPDIIVATPGRFLHICVEMDLQLKNVEY 183
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/30 (86%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL LEGRDVVAMARTGSGKTACFL F
Sbjct: 66 TIPLALEGRDVVAMARTGSGKTACFLIPLF 95
>gi|380029382|ref|XP_003698353.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis florea]
Length = 772
Score = 259 bits (663), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 122/180 (67%), Positives = 148/180 (82%), Gaps = 4/180 (2%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKKKM---GGGFQSFGLGFEVLKGVLKRGYKIPTPIQ 64
+I GF DP IS ND+ + KKK+ GGFQS L F +LKG+LKRGYKIPTPIQ
Sbjct: 5 NIVGFADPK-EISDNDEENEINNIKKKVYKKSGGFQSMALSFPILKGILKRGYKIPTPIQ 63
Query: 65 RKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124
RKTIPL LEGRD+VAMARTGSGKTACFLIP+ EKLKT A +G RALILSPTRELALQT
Sbjct: 64 RKTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKTRQAKAGARALILSPTRELALQTL 123
Query: 125 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KF+KELG+FT L++T +LGGD+M+NQF+ +H +PDI++ATPGRFLHI VEM+L+L++I+Y
Sbjct: 124 KFIKELGRFTGLKATLILGGDNMENQFSAIHGNPDILIATPGRFLHICVEMDLQLNNIEY 183
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL LEGRD+VAMARTGSGKTACFL F
Sbjct: 66 TIPLALEGRDIVAMARTGSGKTACFLIPLF 95
>gi|340723049|ref|XP_003399911.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Bombus terrestris]
Length = 772
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 146/179 (81%), Gaps = 2/179 (1%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKK--KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQR 65
+I GF DP S++DN KKK K GGFQS L F +LKG+L+RGYKIPTPIQR
Sbjct: 5 NIVGFADPGEINDSDEDNEINNIKKKVCKKSGGFQSMALSFPLLKGILRRGYKIPTPIQR 64
Query: 66 KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125
KTIPL LEGRDVVAMARTGSGKTACFLIP+ EKLKT A +G RALILSPTRELALQT K
Sbjct: 65 KTIPLALEGRDVVAMARTGSGKTACFLIPLFEKLKTRRAKAGARALILSPTRELALQTLK 124
Query: 126 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
F+KELGKFT L++ +LGGDSM+NQF+ +H +PDI+VATPGRFLHI +EM+L+L++I+Y
Sbjct: 125 FIKELGKFTDLKAAVILGGDSMENQFSAIHGNPDILVATPGRFLHICIEMDLQLNNIEY 183
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/30 (86%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL LEGRDVVAMARTGSGKTACFL F
Sbjct: 66 TIPLALEGRDVVAMARTGSGKTACFLIPLF 95
>gi|328781928|ref|XP_397101.4| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis mellifera]
Length = 772
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 121/180 (67%), Positives = 146/180 (81%), Gaps = 4/180 (2%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKKKM---GGGFQSFGLGFEVLKGVLKRGYKIPTPIQ 64
+I GF DP IS ND+ D KKK+ GGFQS L F +LKG+LKRGYKIPTPIQ
Sbjct: 5 NIVGFADPK-EISDNDEENEINDIKKKVYKKSGGFQSMALSFPILKGILKRGYKIPTPIQ 63
Query: 65 RKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124
RKTIPL LEGRD+VAMARTGSGKTACFLIP+ EKLK A G RALILSPTRELALQT
Sbjct: 64 RKTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKIRQAKVGARALILSPTRELALQTL 123
Query: 125 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KF+KELG+FT L++T +LGGD+M+NQF+ +H +PDI++ATPGRFLHI +EM+L+L++I+Y
Sbjct: 124 KFIKELGRFTGLKATIILGGDNMENQFSAIHGNPDILIATPGRFLHICIEMDLQLNNIEY 183
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL LEGRD+VAMARTGSGKTACFL F
Sbjct: 66 TIPLALEGRDIVAMARTGSGKTACFLIPLF 95
>gi|242015175|ref|XP_002428249.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
gi|212512810|gb|EEB15511.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
Length = 723
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/181 (69%), Positives = 146/181 (80%), Gaps = 8/181 (4%)
Query: 6 PEDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQR 65
P +IEGF I ++ GN KKK GGGFQ+FG F VLKG+ KRGYKIPTPIQR
Sbjct: 2 PSEIEGF-----NIGEKEEVGNASTKKKN-GGGFQAFGFSFPVLKGIQKRGYKIPTPIQR 55
Query: 66 KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKL--KTHAATSGVRALILSPTRELALQT 123
K+IPL+L+GRDVVAMARTGSGKTACFL+PM EKL KT + GVRALILSPTRELALQT
Sbjct: 56 KSIPLILQGRDVVAMARTGSGKTACFLLPMFEKLINKTPKSRLGVRALILSPTRELALQT 115
Query: 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
KF+KELGKFTKL++ +LGGDSMD QF +H +PDI+VATPGRFLHI VEMELKL+S++
Sbjct: 116 VKFIKELGKFTKLKALAILGGDSMDQQFGAIHENPDIIVATPGRFLHICVEMELKLTSVE 175
Query: 184 Y 184
Y
Sbjct: 176 Y 176
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 27/30 (90%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+IPL+L+GRDVVAMARTGSGKTACFL F
Sbjct: 57 SIPLILQGRDVVAMARTGSGKTACFLLPMF 86
>gi|350423736|ref|XP_003493575.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Bombus impatiens]
Length = 772
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 146/179 (81%), Gaps = 2/179 (1%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKK--KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQR 65
+I GF +P S++D+ KKK K GGFQS L F +LKG+L+RGYKIPTPIQR
Sbjct: 5 NIVGFANPEEINDSDEDSEINNIKKKVCKKSGGFQSMALSFPLLKGILRRGYKIPTPIQR 64
Query: 66 KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125
KTIPL LEGRD+VAMARTGSGKTACFLIP+ EKLKT A +G RALILSPTRELALQT K
Sbjct: 65 KTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKTRQAKAGARALILSPTRELALQTLK 124
Query: 126 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
F+KELGKFT L++ +LGGDSM+NQF+ +H +PDI+VATPGRFLHI +EM+L+L++I+Y
Sbjct: 125 FIKELGKFTDLKAAVILGGDSMENQFSAIHGNPDILVATPGRFLHICIEMDLQLNNIEY 183
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL LEGRD+VAMARTGSGKTACFL F
Sbjct: 66 TIPLALEGRDIVAMARTGSGKTACFLIPLF 95
>gi|195108365|ref|XP_001998763.1| GI24146 [Drosophila mojavensis]
gi|193915357|gb|EDW14224.1| GI24146 [Drosophila mojavensis]
Length = 829
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 123/186 (66%), Positives = 151/186 (81%), Gaps = 3/186 (1%)
Query: 1 MKKKDPEDIEGFE--DPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYK 58
M+KK ++I GF D + T NDD T K KK GGFQS GLGFE+LKG+ KRGYK
Sbjct: 1 MRKKQQDEIPGFPSLDQSGTSGGNDDILKTKPKSKK-SGGFQSLGLGFELLKGITKRGYK 59
Query: 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118
+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+ EKL+ T G RALILSPTRE
Sbjct: 60 VPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGARALILSPTRE 119
Query: 119 LALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK 178
LA+QT+KF+K+LG+F +L++ +LGGDSMD+QF+ +H PDI+VATPGRFLH+ VEM+LK
Sbjct: 120 LAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTCPDIIVATPGRFLHLCVEMDLK 179
Query: 179 LSSIQY 184
L+SI+Y
Sbjct: 180 LNSIEY 185
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIPL+LEGRDVVAMA+TGSGKTACFL F + R
Sbjct: 68 TIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 102
>gi|383849107|ref|XP_003700188.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Megachile
rotundata]
Length = 770
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 142/179 (79%), Gaps = 2/179 (1%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKKKMG--GGFQSFGLGFEVLKGVLKRGYKIPTPIQR 65
DIEGF DP ++N T KKK GGFQS L + VLKG+L+RGYKIPTPIQR
Sbjct: 5 DIEGFADPEKINDDEEENEITSIKKKACSKSGGFQSMALSYPVLKGILRRGYKIPTPIQR 64
Query: 66 KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125
KTIPL LEGRDVVAMARTGSGKTACFLIP+ EKLK G RALILSPTRELALQT K
Sbjct: 65 KTIPLALEGRDVVAMARTGSGKTACFLIPLFEKLKARQTKIGARALILSPTRELALQTLK 124
Query: 126 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
F+KELG+FT LQ+ +LGGD+M+NQF+ +H +PDI+VATPGRFLHI +EM+L+L+SI+Y
Sbjct: 125 FIKELGRFTGLQAAVILGGDNMENQFSTIHGNPDILVATPGRFLHICIEMDLQLNSIEY 183
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/30 (86%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL LEGRDVVAMARTGSGKTACFL F
Sbjct: 66 TIPLALEGRDVVAMARTGSGKTACFLIPLF 95
>gi|195389156|ref|XP_002053243.1| GJ23450 [Drosophila virilis]
gi|194151329|gb|EDW66763.1| GJ23450 [Drosophila virilis]
Length = 829
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/188 (64%), Positives = 151/188 (80%), Gaps = 7/188 (3%)
Query: 1 MKKKDPEDIEGFEDPTV----TISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRG 56
M+KK ++I GF P++ T NDD K KK GGFQS GLGFE+LKG+ KRG
Sbjct: 1 MRKKQHDEIPGF--PSLEQNGTSGGNDDILKNKPKSKK-SGGFQSLGLGFELLKGITKRG 57
Query: 57 YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116
YK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIPM EKL+ T G RALILSPT
Sbjct: 58 YKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPMFEKLQRREPTKGARALILSPT 117
Query: 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 176
RELA+QT+KF+K+LG+F +L++ +LGGDSMD+QF+ +H PD++VATPGRFLH+ VEM+
Sbjct: 118 RELAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMD 177
Query: 177 LKLSSIQY 184
LKL+SI+Y
Sbjct: 178 LKLNSIEY 185
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIPL+LEGRDVVAMA+TGSGKTACFL F + R
Sbjct: 68 TIPLILEGRDVVAMAKTGSGKTACFLIPMFEKLQR 102
>gi|194864582|ref|XP_001971010.1| GG14669 [Drosophila erecta]
gi|190652793|gb|EDV50036.1| GG14669 [Drosophila erecta]
Length = 827
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/193 (62%), Positives = 153/193 (79%), Gaps = 16/193 (8%)
Query: 1 MKKKDPEDIEGFEDPTVTISSNDDNGNTGDK---------KKKMGGGFQSFGLGFEVLKG 51
M+KK ++I GF P++ D++G T ++ KK GGFQS GLGFE++KG
Sbjct: 1 MRKKQADEIPGF--PSL-----DNDGGTSERGADILKSKSKKSKSGGFQSMGLGFELIKG 53
Query: 52 VLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111
+ KRGYK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+ EKL+ T G RAL
Sbjct: 54 ITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGARAL 113
Query: 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171
ILSPTRELA+QT+KF+KELG+F +L+S +LGGDSMD+QF+ +H PD++VATPGRFLH+
Sbjct: 114 ILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHL 173
Query: 172 VVEMELKLSSIQY 184
VEM+LKL+SI+Y
Sbjct: 174 CVEMDLKLNSIEY 186
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIPL+LEGRDVVAMA+TGSGKTACFL F + R
Sbjct: 69 TIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 103
>gi|195583246|ref|XP_002081434.1| GD25714 [Drosophila simulans]
gi|194193443|gb|EDX07019.1| GD25714 [Drosophila simulans]
Length = 827
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/193 (62%), Positives = 152/193 (78%), Gaps = 16/193 (8%)
Query: 1 MKKKDPEDIEGFEDPTVTISSNDDNGNTGDK---------KKKMGGGFQSFGLGFEVLKG 51
M+KK ++I GF P++ D++ T D+ KK GGFQS GLGFE++KG
Sbjct: 1 MRKKQADEIPGF--PSL-----DNDAGTSDRGADILKSKSKKNKSGGFQSMGLGFELIKG 53
Query: 52 VLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111
+ KRGYK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+ EKL+ T G RAL
Sbjct: 54 ITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGARAL 113
Query: 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171
ILSPTRELA+QT+KF+KELG+F +L+S +LGGDSMD+QF+ +H PD++VATPGRFLH+
Sbjct: 114 ILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHL 173
Query: 172 VVEMELKLSSIQY 184
VEM+LKL+SI+Y
Sbjct: 174 CVEMDLKLNSIEY 186
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIPL+LEGRDVVAMA+TGSGKTACFL F + R
Sbjct: 69 TIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 103
>gi|28575014|ref|NP_612028.4| CG32344 [Drosophila melanogaster]
gi|18447311|gb|AAL68229.1| LD28101p [Drosophila melanogaster]
gi|23092697|gb|AAN11439.1| CG32344 [Drosophila melanogaster]
gi|220947558|gb|ACL86322.1| CG32344-PA [synthetic construct]
Length = 827
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/193 (62%), Positives = 152/193 (78%), Gaps = 16/193 (8%)
Query: 1 MKKKDPEDIEGFEDPTVTISSNDDNGNTGDK---------KKKMGGGFQSFGLGFEVLKG 51
M+KK ++I GF P++ D++ T D+ KK GGFQS GLGFE++KG
Sbjct: 1 MRKKQADEIPGF--PSL-----DNDAGTSDRGADILKSKSKKNKSGGFQSMGLGFELIKG 53
Query: 52 VLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111
+ KRGYK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+ EKL+ T G RAL
Sbjct: 54 ITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGARAL 113
Query: 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171
ILSPTRELA+QT+KF+KELG+F +L+S +LGGDSMD+QF+ +H PD++VATPGRFLH+
Sbjct: 114 ILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHL 173
Query: 172 VVEMELKLSSIQY 184
VEM+LKL+SI+Y
Sbjct: 174 CVEMDLKLNSIEY 186
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIPL+LEGRDVVAMA+TGSGKTACFL F + R
Sbjct: 69 TIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 103
>gi|195336302|ref|XP_002034780.1| GM14284 [Drosophila sechellia]
gi|194127873|gb|EDW49916.1| GM14284 [Drosophila sechellia]
Length = 827
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/193 (62%), Positives = 152/193 (78%), Gaps = 16/193 (8%)
Query: 1 MKKKDPEDIEGFEDPTVTISSNDDNGNTGDK---------KKKMGGGFQSFGLGFEVLKG 51
M+KK ++I GF P++ D++ T D+ KK GGFQS GLGFE++KG
Sbjct: 1 MRKKQADEIPGF--PSL-----DNDAGTSDRGADILKSKSKKNKSGGFQSMGLGFELIKG 53
Query: 52 VLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111
+ KRGYK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+ EKL+ T G RAL
Sbjct: 54 ITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGARAL 113
Query: 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171
ILSPTRELA+QT+KF+KELG+F +L+S +LGGDSMD+QF+ +H PD++VATPGRFLH+
Sbjct: 114 ILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHL 173
Query: 172 VVEMELKLSSIQY 184
VEM+LKL+SI+Y
Sbjct: 174 CVEMDLKLNSIEY 186
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIPL+LEGRDVVAMA+TGSGKTACFL F + R
Sbjct: 69 TIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 103
>gi|307193157|gb|EFN76062.1| ATP-dependent RNA helicase DDX54 [Harpegnathos saltator]
Length = 772
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 144/179 (80%), Gaps = 3/179 (1%)
Query: 8 DIEGFEDPTVTISSNDDN--GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQR 65
D+ GF DP IS N+D N K K GGFQS L F VLKG+LKRGYKIPTPIQR
Sbjct: 5 DLVGFTDPNA-ISDNEDTEIANIKKKISKKSGGFQSMALTFPVLKGILKRGYKIPTPIQR 63
Query: 66 KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125
KTIPL LEGRD+VAMARTGSGKTACFLIP+ EKLKT A +G RALILSPTRELALQT K
Sbjct: 64 KTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKTRLAKTGARALILSPTRELALQTLK 123
Query: 126 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
F+KELGKFT L++ +LGGDS+D+QF+ +H +PDI+VATPGRFLHI VEM+L+L +++Y
Sbjct: 124 FIKELGKFTGLKAAVILGGDSIDDQFSAIHGNPDIIVATPGRFLHICVEMDLQLKNVEY 182
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL LEGRD+VAMARTGSGKTACFL F
Sbjct: 65 TIPLALEGRDIVAMARTGSGKTACFLIPLF 94
>gi|332025035|gb|EGI65222.1| ATP-dependent RNA helicase DDX54 [Acromyrmex echinatior]
Length = 776
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/181 (66%), Positives = 144/181 (79%), Gaps = 4/181 (2%)
Query: 7 EDIEGFEDPTVTISSNDDNGNTGDKKKKMGGG---FQSFGLGFEVLKGVLKRGYKIPTPI 63
+D+ GF D T+S ND++ KKK+ FQS L F +LKG+LKRGYKIPTPI
Sbjct: 4 DDLIGFADLN-TVSDNDEDNEIASIKKKIFKKSGGFQSMALSFPILKGILKRGYKIPTPI 62
Query: 64 QRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123
QRKTIPL LEGRD+VAMARTGSGKTACFLIP+ EKLK A +G RALILSPTRELALQT
Sbjct: 63 QRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKVRQAKTGARALILSPTRELALQT 122
Query: 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
KF+KELG+FT L+S +LGGDSMDNQF+ +H +PDI+VATPGRFLHI VEM+L+L +I+
Sbjct: 123 LKFIKELGRFTGLKSAVILGGDSMDNQFSAIHGNPDIIVATPGRFLHICVEMDLQLKNIE 182
Query: 184 Y 184
Y
Sbjct: 183 Y 183
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL LEGRD+VAMARTGSGKTACFL F
Sbjct: 66 TIPLALEGRDIVAMARTGSGKTACFLIPLF 95
>gi|194747377|ref|XP_001956128.1| GF25051 [Drosophila ananassae]
gi|190623410|gb|EDV38934.1| GF25051 [Drosophila ananassae]
Length = 826
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 11/190 (5%)
Query: 1 MKKKDPEDIEGFEDPTVTISSNDDNGNTGD------KKKKMGGGFQSFGLGFEVLKGVLK 54
M KK ++I GF P++ ND G D K K GGFQS GLGFE++KG+ K
Sbjct: 1 MGKKQADEIPGF--PSL---DNDGGGKQNDDILKSKAKSKKSGGFQSMGLGFELIKGITK 55
Query: 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114
RGYK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+ EKL+ T G RALILS
Sbjct: 56 RGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGARALILS 115
Query: 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 174
PTRELA+QT+KF+KELG+F +L++ +LGGDSMD+QF+ +H PD++VATPGRFLH+ VE
Sbjct: 116 PTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVE 175
Query: 175 MELKLSSIQY 184
M+LKL+SI+Y
Sbjct: 176 MDLKLNSIEY 185
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIPL+LEGRDVVAMA+TGSGKTACFL F + R
Sbjct: 68 TIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 102
>gi|345314566|ref|XP_001514939.2| PREDICTED: ATP-dependent RNA helicase DDX54-like [Ornithorhynchus
anatinus]
Length = 416
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/259 (49%), Positives = 163/259 (62%), Gaps = 50/259 (19%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 143 NKKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 202
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM EKLK H+A +G RAL+LSPTRELALQT KF KELGKFT L+ +LGGD M++
Sbjct: 203 CFLIPMFEKLKAHSAQAGARALVLSPTRELALQTGKFTKELGKFTGLKMALILGGDRMED 262
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSM 209
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y F + S + G S
Sbjct: 263 QFAALHENPDIIIATPGRLMHVAVEMNLKLQSVEYVV--------FDEADSLSIGGEGSA 314
Query: 210 DNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLVGDSTEM 269
F Q S LDL+GD ++
Sbjct: 315 -----------------------------------------FDQPASSAVLDLMGDDSQN 333
Query: 270 IHKQRQSVRKWDPAKKKYV 288
++K +Q + KWD +K++V
Sbjct: 334 LYKSKQ-LLKWDRKRKRFV 351
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L+G+DVVAMARTGSGKTACFL F +
Sbjct: 180 TIPVILDGKDVVAMARTGSGKTACFLIPMFEKL 212
>gi|270000966|gb|EEZ97413.1| hypothetical protein TcasGA2_TC011242 [Tribolium castaneum]
Length = 761
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/177 (67%), Positives = 141/177 (79%), Gaps = 1/177 (0%)
Query: 9 IEGFEDPTVTISSNDDNGNTGDKKKKMGGG-FQSFGLGFEVLKGVLKRGYKIPTPIQRKT 67
+ GF +P T+ ND KK GG FQ GL + VLKG+ KRGY+ PTPIQRKT
Sbjct: 4 VPGFANPDQTVEINDSTEEKVKKKGSKKGGGFQCMGLSYNVLKGITKRGYQQPTPIQRKT 63
Query: 68 IPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127
IPLVLEGRDVVAMARTGSGKTACFLIPM EKLK +A +G RALILSPTRELALQT KF+
Sbjct: 64 IPLVLEGRDVVAMARTGSGKTACFLIPMFEKLKIRSAKAGARALILSPTRELALQTLKFI 123
Query: 128 KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KELG+FT L+S +LGGDSMD+QF+ +H +PDI+VATPGRFLH+ +EMELKL+S++Y
Sbjct: 124 KELGRFTGLKSAVILGGDSMDDQFSAIHGNPDIIVATPGRFLHVCIEMELKLNSVEY 180
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Query: 284 KKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
K+ Y Q T TIPLVLEGRDVVAMARTGSGKTACFL F
Sbjct: 50 KRGYQQPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMF 92
>gi|297484847|ref|XP_002694562.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Bos taurus]
gi|296478588|tpg|DAA20703.1| TPA: DEAD box RNA helicase DP97-like [Bos taurus]
Length = 876
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 109/155 (70%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPM 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLIPMFERL 158
>gi|126324487|ref|XP_001378612.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Monodelphis domestica]
Length = 895
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/156 (70%), Positives = 133/156 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 117 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 176
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM EKLK H+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 177 CFLIPMFEKLKAHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 236
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
QFA LH +PDI++ATPGR +H+ VEM LKL S+QY
Sbjct: 237 QFAALHENPDIIIATPGRLMHVAVEMNLKLQSVQYA 272
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIP++L+G+DVVAMARTGSGKTACFL F
Sbjct: 154 TIPVILDGKDVVAMARTGSGKTACFLIPMF 183
>gi|395513937|ref|XP_003761178.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Sarcophilus harrisii]
Length = 757
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 110/156 (70%), Positives = 133/156 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 31 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 90
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM EKLK H+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 91 CFLIPMFEKLKAHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 150
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
QFA LH +PDI++ATPGR +H+ VEM LKL S+QY
Sbjct: 151 QFAALHENPDIIIATPGRLMHVAVEMNLKLHSVQYA 186
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 44/82 (53%), Gaps = 17/82 (20%)
Query: 259 ALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPLVLEG 301
A D+ D+ EMI Q + +K P KK Y + TIP++L+G
Sbjct: 16 ASDVEPDTQEMIRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDG 75
Query: 302 RDVVAMARTGSGKTACFLFYFF 323
+DVVAMARTGSGKTACFL F
Sbjct: 76 KDVVAMARTGSGKTACFLIPMF 97
>gi|426247766|ref|XP_004017647.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Ovis aries]
Length = 864
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 109/155 (70%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPM 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLIPMFERL 158
>gi|307175593|gb|EFN65503.1| ATP-dependent RNA helicase DDX54 [Camponotus floridanus]
Length = 751
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 130/151 (86%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGFQS L F +LKG+LKRGYKIPTPIQRKTIPL LEGRD+VAMARTGSGKTACFLI
Sbjct: 5 KKSGGFQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLI 64
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
P+ EKLKT +G RALILSPTRELALQT KF+KELG+FT L++ +LGGDSMDNQF+
Sbjct: 65 PLFEKLKTRQTKTGARALILSPTRELALQTLKFIKELGRFTGLKAVVILGGDSMDNQFSI 124
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+H +PDI+VATPGRF+HI +EM+LKL +++Y
Sbjct: 125 IHENPDIIVATPGRFVHICIEMDLKLKNVEY 155
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL LEGRD+VAMARTGSGKTACFL F
Sbjct: 38 TIPLALEGRDIVAMARTGSGKTACFLIPLF 67
>gi|195490088|ref|XP_002092996.1| GE21030 [Drosophila yakuba]
gi|194179097|gb|EDW92708.1| GE21030 [Drosophila yakuba]
Length = 827
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/186 (63%), Positives = 147/186 (79%), Gaps = 2/186 (1%)
Query: 1 MKKKDPEDIEGFE--DPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYK 58
M+KK ++I GF D IS + KK GGFQS GLGFE++KG+ KRGYK
Sbjct: 1 MRKKQADEIPGFPSLDNDGAISERGADILKSKSKKNKSGGFQSMGLGFELIKGITKRGYK 60
Query: 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118
+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+ EKL+ T G RALILSPTRE
Sbjct: 61 VPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGARALILSPTRE 120
Query: 119 LALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK 178
LA+QT+KF+KELG+F +L++ +LGGDSMD+QF+ +H PD++VATPGRFLH+ VEM+LK
Sbjct: 121 LAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLK 180
Query: 179 LSSIQY 184
L+SI+Y
Sbjct: 181 LNSIEY 186
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIPL+LEGRDVVAMA+TGSGKTACFL F + R
Sbjct: 69 TIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 103
>gi|440898266|gb|ELR49795.1| ATP-dependent RNA helicase DDX54 [Bos grunniens mutus]
Length = 872
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 109/155 (70%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPM 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLIPMFERL 158
>gi|194214292|ref|XP_001915035.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Equus caballus]
Length = 860
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V +GV+K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 69 NKKKKKSGGFQSMGLSYPVFRGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 128
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LKTH+A +G RAL+LSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 129 CFLIPMFERLKTHSAQTGARALVLSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 188
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 189 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 223
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 50 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFRGVMKKGYKVPTPIQRKTIPV 109
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 110 ILDGKDVVAMARTGSGKTACFLIPMFERL 138
>gi|156552297|ref|XP_001600622.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Nasonia
vitripennis]
Length = 782
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 115/186 (61%), Positives = 143/186 (76%), Gaps = 7/186 (3%)
Query: 8 DIEGFEDPTVTISSNDDNGN-------TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIP 60
D+E + DP + +++ N KK GGFQS GL V++G+LKRGYKIP
Sbjct: 2 DVEEYADPRNSDEDDEEENNIIKENKKKAGKKSNKSGGFQSMGLSQSVIRGILKRGYKIP 61
Query: 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120
TPIQRKTIP+ L+GRDVVAMARTGSGKTACFLIPM EKLKT A +G RALILSPTRELA
Sbjct: 62 TPIQRKTIPIALDGRDVVAMARTGSGKTACFLIPMFEKLKTRQAKTGARALILSPTRELA 121
Query: 121 LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 180
LQT +F+KE+G+FT L+S+ +LGGDSMDNQF+ +H +PDI+VATPGRFLHI +EM++ L
Sbjct: 122 LQTQRFIKEIGRFTGLKSSVILGGDSMDNQFSAIHGNPDIIVATPGRFLHICIEMDMNLK 181
Query: 181 SIQYTF 186
SI++
Sbjct: 182 SIEFVI 187
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIP+ L+GRDVVAMARTGSGKTACFL F
Sbjct: 68 TIPIALDGRDVVAMARTGSGKTACFLIPMF 97
>gi|297693028|ref|XP_002823828.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54
[Pongo abelii]
Length = 883
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|327282682|ref|XP_003226071.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Anolis
carolinensis]
Length = 840
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/155 (70%), Positives = 133/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+K+GYKIPTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 56 NKKKKKSGGFQSMGLSYPVFKGVMKKGYKIPTPIQRKTIPVILDGKDVVAMARTGSGKTA 115
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM EKLK H+A +G RALILSPTRELALQT KF KELG+F L++ +LGGD M++
Sbjct: 116 CFLIPMFEKLKAHSAKTGARALILSPTRELALQTLKFTKELGRFAGLKTALILGGDKMED 175
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM+LKL S++Y
Sbjct: 176 QFAALHENPDIIIATPGRLMHVAVEMKLKLHSVEY 210
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIP++L+G+DVVAMARTGSGKTACFL F
Sbjct: 93 TIPVILDGKDVVAMARTGSGKTACFLIPMF 122
>gi|410216684|gb|JAA05561.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410253652|gb|JAA14793.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410293490|gb|JAA25345.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410354051|gb|JAA43629.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
Length = 885
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|410216682|gb|JAA05560.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410253650|gb|JAA14792.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410293488|gb|JAA25344.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410354049|gb|JAA43628.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
Length = 882
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|114647100|ref|XP_001152281.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 5 [Pan
troglodytes]
Length = 884
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|397525044|ref|XP_003832488.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Pan paniscus]
Length = 884
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|405975829|gb|EKC40371.1| ATP-dependent RNA helicase DDX54, partial [Crassostrea gigas]
Length = 742
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/182 (63%), Positives = 140/182 (76%), Gaps = 2/182 (1%)
Query: 3 KKDPEDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTP 62
K+D ED + D + + ++KKK GGFQS GL V KGVL++GYKIPTP
Sbjct: 1 KQDKEDADS--DSSQELQDTRKWLTEQNRKKKKSGGFQSMGLSHGVYKGVLRKGYKIPTP 58
Query: 63 IQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122
IQRKT+PL++EG+DVVAMARTGSGKTA FLIPM EKLKTH A SG R LILSPTRELALQ
Sbjct: 59 IQRKTVPLIMEGKDVVAMARTGSGKTAAFLIPMFEKLKTHTAKSGARGLILSPTRELALQ 118
Query: 123 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 182
T KF KELGK+T L++ +LGGD MD+QFA LH +PDI++ATPGR +H++VEME KL S+
Sbjct: 119 TLKFTKELGKYTGLRAAVVLGGDKMDDQFAALHENPDIIIATPGRLMHVLVEMEKKLKSV 178
Query: 183 QY 184
+Y
Sbjct: 179 EY 180
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
T+PL++EG+DVVAMARTGSGKTA FL F
Sbjct: 63 TVPLIMEGKDVVAMARTGSGKTAAFLIPMF 92
>gi|426374226|ref|XP_004053980.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Gorilla gorilla
gorilla]
Length = 881
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|51094101|ref|NP_076977.3| ATP-dependent RNA helicase DDX54 isoform 2 [Homo sapiens]
gi|46576615|sp|Q8TDD1.2|DDX54_HUMAN RecName: Full=ATP-dependent RNA helicase DDX54; AltName:
Full=ATP-dependent RNA helicase DP97; AltName: Full=DEAD
box RNA helicase 97 kDa; AltName: Full=DEAD box protein
54
gi|162319036|gb|AAI56670.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [synthetic construct]
Length = 881
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|164419743|ref|NP_001104792.1| ATP-dependent RNA helicase DDX54 isoform 1 [Homo sapiens]
gi|19110894|gb|AAL85336.1|AF478457_1 ATP-dependent RNA helicase [Homo sapiens]
gi|119618445|gb|EAW98039.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, isoform CRA_a [Homo
sapiens]
Length = 882
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|403281618|ref|XP_003932278.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Saimiri boliviensis
boliviensis]
Length = 879
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|383421509|gb|AFH33968.1| ATP-dependent RNA helicase DDX54 isoform 1 [Macaca mulatta]
Length = 884
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|109098826|ref|XP_001111246.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 2 [Macaca
mulatta]
Length = 883
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|28301751|gb|AAN59978.1| DEAD box RNA helicase DP97 [Homo sapiens]
gi|119618446|gb|EAW98040.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, isoform CRA_b [Homo
sapiens]
Length = 865
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 73 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 132
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 133 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 192
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 193 QFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 227
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 54 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 113
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 114 ILDGKDVVAMARTGSGKTACFLLPMFERL 142
>gi|38014855|gb|AAH05848.2| DDX54 protein, partial [Homo sapiens]
Length = 864
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 72 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 131
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 132 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 191
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 192 QFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 226
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 53 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 112
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 113 ILDGKDVVAMARTGSGKTACFLLPMFERL 141
>gi|402887738|ref|XP_003907240.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Papio anubis]
Length = 883
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|156396703|ref|XP_001637532.1| predicted protein [Nematostella vectensis]
gi|156224645|gb|EDO45469.1| predicted protein [Nematostella vectensis]
Length = 700
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/148 (75%), Positives = 133/148 (89%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGFQS GL F V KGV+K+GYK+PTPIQRKT+PLV++G+DVVAMARTGSGKTA FLIPM
Sbjct: 19 GGFQSLGLSFPVFKGVMKKGYKVPTPIQRKTLPLVMDGKDVVAMARTGSGKTAAFLIPMF 78
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
EKL+TH A G+RALILSPTRELALQT KF+KELG+FT L+S+ +LGGDS++ QFA +H
Sbjct: 79 EKLQTHTAKVGIRALILSPTRELALQTQKFIKELGRFTGLKSSVILGGDSLEGQFAAIHT 138
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY 184
+PDIVVATPGRFLH+V+EMELKLSS++Y
Sbjct: 139 NPDIVVATPGRFLHVVMEMELKLSSVEY 166
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
T+PLV++G+DVVAMARTGSGKTA FL F
Sbjct: 49 TLPLVMDGKDVVAMARTGSGKTAAFLIPMF 78
>gi|355564704|gb|EHH21204.1| hypothetical protein EGK_04216 [Macaca mulatta]
Length = 790
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|296212991|ref|XP_002753123.1| PREDICTED: ATP-dependent RNA helicase DDX54, partial [Callithrix
jacchus]
Length = 471
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|147898895|ref|NP_001088266.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Xenopus laevis]
gi|83318280|gb|AAI08845.1| LOC495097 protein [Xenopus laevis]
Length = 846
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+K+GYK+PTPIQRK +P++L+G+DVVAMARTGSGKTA
Sbjct: 68 NKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTA 127
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM EKLK H+A +GVR LILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 128 CFLIPMFEKLKAHSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 187
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ +EM LKL S++Y
Sbjct: 188 QFAALHENPDIIIATPGRLMHVAIEMNLKLRSVEY 222
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+P++L+G+DVVAMARTGSGKTACFL F
Sbjct: 106 VPVILDGKDVVAMARTGSGKTACFLIPMF 134
>gi|344295386|ref|XP_003419393.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Loxodonta africana]
Length = 926
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 133/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V +G++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 222 NKKKKKSGGFQSMGLSYPVFRGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTA 281
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LK H+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 282 CFLIPMFERLKAHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 341
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 342 QFAALHKNPDIIIATPGRLVHVAVEMSLKLQSMEY 376
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 203 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFRGIMKKGYKVPTPIQRKTIPM 262
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 263 ILDGKDVVAMARTGSGKTACFLIPMFERL 291
>gi|441629962|ref|XP_003274471.2| PREDICTED: ATP-dependent RNA helicase DDX54 [Nomascus leucogenys]
Length = 862
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 133/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 73 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 132
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 133 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 192
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PD ++ATPGR +H+ VEM LKL S++Y
Sbjct: 193 QFAALHENPDTIIATPGRLVHVAVEMNLKLQSVEY 227
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L+G+DVVAMARTGSGKTACFL F R
Sbjct: 110 TIPVILDGKDVVAMARTGSGKTACFLLPMFERL 142
>gi|301609527|ref|XP_002934380.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Xenopus (Silurana)
tropicalis]
Length = 847
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+K+GYK+PTPIQRK IP++L+G+DVVAMARTGSGKTA
Sbjct: 66 NKKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKVIPVILDGKDVVAMARTGSGKTA 125
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM EKLK H+A +GVR LILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 126 CFLIPMFEKLKAHSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMED 185
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ +EM LKL +++Y
Sbjct: 186 QFAALHENPDIIIATPGRLMHVAIEMNLKLRTVEY 220
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFF 323
IP++L+G+DVVAMARTGSGKTACFL F
Sbjct: 104 IPVILDGKDVVAMARTGSGKTACFLIPMF 132
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 244 IQLSLTDFKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV 288
+ + + F+Q + LDL+GD TE + K +Q V KWD KKK+V
Sbjct: 662 LSIGASSFEQAAAGAVLDLLGDQTEDLRKNKQ-VMKWDRKKKKFV 705
>gi|355683380|gb|AER97088.1| DEAD box polypeptide 54 [Mustela putorius furo]
Length = 877
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 133/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 88 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 147
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LKT +A +G RAL+LSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 148 CFLIPMFERLKTRSAQTGARALVLSPTRELALQTMKFTKELGKFTGLRTALILGGDKMED 207
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL SI+Y
Sbjct: 208 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSIEY 242
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS A D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 69 TSECASDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 128
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 129 ILDGKDVVAMARTGSGKTACFLIPMFERL 157
>gi|54038020|gb|AAH84268.1| LOC495097 protein, partial [Xenopus laevis]
Length = 717
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+K+GYK+PTPIQRK +P++L+G+DVVAMARTGSGKTA
Sbjct: 68 NKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTA 127
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM EKLK H+A +GVR LILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 128 CFLIPMFEKLKAHSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 187
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ +EM LKL S++Y
Sbjct: 188 QFAALHENPDIIIATPGRLMHVAIEMNLKLRSVEY 222
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+P++L+G+DVVAMARTGSGKTACFL F
Sbjct: 106 VPVILDGKDVVAMARTGSGKTACFLIPMF 134
>gi|62740160|gb|AAH94142.1| LOC495097 protein, partial [Xenopus laevis]
Length = 693
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+K+GYK+PTPIQRK +P++L+G+DVVAMARTGSGKTA
Sbjct: 68 NKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTA 127
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM EKLK H+A +GVR LILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 128 CFLIPMFEKLKAHSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 187
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ +EM LKL S++Y
Sbjct: 188 QFAALHENPDIIIATPGRLMHVAIEMNLKLRSVEY 222
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+P++L+G+DVVAMARTGSGKTACFL F
Sbjct: 106 VPVILDGKDVVAMARTGSGKTACFLIPMF 134
>gi|195170534|ref|XP_002026067.1| GL16100 [Drosophila persimilis]
gi|194110947|gb|EDW32990.1| GL16100 [Drosophila persimilis]
Length = 854
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 107/148 (72%), Positives = 131/148 (88%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGFQS GLGFE++KG+ KRGYK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+
Sbjct: 39 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 98
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
EKL+ T G RALILSPTRELA+QT+KF+KELG+F +L++ +LGGDSMD+QF+ +H
Sbjct: 99 EKLQRRDPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHT 158
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY 184
PD++VATPGRFLH+ VEM+LKL+SI Y
Sbjct: 159 CPDVIVATPGRFLHLCVEMDLKLNSIDY 186
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIPL+LEGRDVVAMA+TGSGKTACFL F + R
Sbjct: 69 TIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 103
>gi|198462641|ref|XP_001352498.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
gi|198150914|gb|EAL29995.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
Length = 852
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 107/148 (72%), Positives = 131/148 (88%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGFQS GLGFE++KG+ KRGYK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+
Sbjct: 39 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 98
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
EKL+ T G RALILSPTRELA+QT+KF+KELG+F +L++ +LGGDSMD+QF+ +H
Sbjct: 99 EKLQRRDPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHT 158
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY 184
PD++VATPGRFLH+ VEM+LKL+SI Y
Sbjct: 159 CPDVIVATPGRFLHLCVEMDLKLNSIDY 186
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIPL+LEGRDVVAMA+TGSGKTACFL F + R
Sbjct: 69 TIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 103
>gi|405968650|gb|EKC33699.1| ATP-dependent RNA helicase DDX54 [Crassostrea gigas]
Length = 472
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 110/156 (70%), Positives = 131/156 (83%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++KKK GGFQS GL V KGVL++GYKIPTPIQRKT+PL++EG+DVVAMARTGSGKTA
Sbjct: 39 NRKKKKSGGFQSMGLSHGVYKGVLRKGYKIPTPIQRKTVPLIMEGKDVVAMARTGSGKTA 98
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FLIPM EKLKTH A SG R LILSPTRELALQT KF KELGK+T L++ +LGGD MD+
Sbjct: 99 AFLIPMFEKLKTHTAKSGARGLILSPTRELALQTLKFTKELGKYTGLRAAVVLGGDKMDD 158
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
QFA LH +PDI++ATPGR +H++VEME KL S++Y
Sbjct: 159 QFAALHENPDIIIATPGRLMHVLVEMEKKLKSVEYV 194
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
T+PL++EG+DVVAMARTGSGKTA FL F
Sbjct: 76 TVPLIMEGKDVVAMARTGSGKTAAFLIPMF 105
>gi|444723055|gb|ELW63720.1| ATP-dependent RNA helicase DDX54 [Tupaia chinensis]
Length = 937
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 133/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKT +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTRSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLLPMFERL 158
>gi|395834008|ref|XP_003790009.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Otolemur garnettii]
Length = 859
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 133/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 73 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 132
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKT +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 133 CFLLPMFERLKTRSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 192
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 193 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 227
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 54 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 113
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 114 ILDGKDVVAMARTGSGKTACFLLPMFERL 142
>gi|301779842|ref|XP_002925338.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Ailuropoda
melanoleuca]
Length = 863
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 133/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 76 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 135
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LKT +A +G RAL+LSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 136 CFLIPMFERLKTRSAQTGARALVLSPTRELALQTMKFTKELGKFTGLRTALILGGDKMED 195
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM L+L S++Y
Sbjct: 196 QFAALHENPDIIIATPGRLVHVAVEMNLRLQSVEY 230
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 57 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 116
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 117 ILDGKDVVAMARTGSGKTACFLIPMFERL 145
>gi|344257761|gb|EGW13865.1| ATP-dependent RNA helicase DDX54 [Cricetulus griseus]
Length = 861
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 72 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 131
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 132 CFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 191
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 192 QFAALHENPDIIIATPGRLMHVAVEMNLKLQSVEY 226
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L+G+DVVAMARTGSGKTACFL F R
Sbjct: 109 TIPVILDGKDVVAMARTGSGKTACFLLPMFERL 141
>gi|354497511|ref|XP_003510863.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 1 [Cricetulus
griseus]
Length = 876
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 88 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 147
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 148 CFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 207
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 208 QFAALHENPDIIIATPGRLMHVAVEMNLKLQSVEY 242
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L+G+DVVAMARTGSGKTACFL F R
Sbjct: 125 TIPVILDGKDVVAMARTGSGKTACFLLPMFERL 157
>gi|354497513|ref|XP_003510864.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 2 [Cricetulus
griseus]
Length = 875
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 88 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 147
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 148 CFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 207
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 208 QFAALHENPDIIIATPGRLMHVAVEMNLKLQSVEY 242
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L+G+DVVAMARTGSGKTACFL F R
Sbjct: 125 TIPVILDGKDVVAMARTGSGKTACFLLPMFERL 157
>gi|417405072|gb|JAA49261.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 876
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+GRDVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYTVFKGIMKKGYKVPTPIQRKTIPVILDGRDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLIPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QF+ LH +PD+++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFSALHENPDVIIATPGRLMHVAVEMNLKLQSVEY 243
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWDP--------------AKKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYTVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+GRDVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGRDVVAMARTGSGKTACFLIPMFERL 158
>gi|89269500|emb|CAJ82782.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Xenopus (Silurana)
tropicalis]
Length = 437
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 107/156 (68%), Positives = 132/156 (84%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+K+GYK+PTPIQRK IP++L+G+DVVAMARTGSGKTA
Sbjct: 66 NKKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKVIPVILDGKDVVAMARTGSGKTA 125
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM EKLK H+A +GVR LILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 126 CFLIPMFEKLKAHSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMED 185
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
QFA LH +PDI++ATPGR +H+ +EM LKL +++Y
Sbjct: 186 QFAALHENPDIIIATPGRLMHVAIEMNLKLRTVEYV 221
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
IP++L+G+DVVAMARTGSGKTACFL F
Sbjct: 103 VIPVILDGKDVVAMARTGSGKTACFLIPMF 132
>gi|443712578|gb|ELU05832.1| hypothetical protein CAPTEDRAFT_148777 [Capitella teleta]
Length = 902
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/155 (70%), Positives = 131/155 (84%), Gaps = 1/155 (0%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++KKK GGFQS GL V G+++RGYK+PTPIQRKTIPL+L+G+DVVAMARTGSGKTA
Sbjct: 142 NRKKKKSGGFQSMGLSHHVFTGIMRRGYKVPTPIQRKTIPLILDGKDVVAMARTGSGKTA 201
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FLIPM EKLK H T G RALIL+PTRELALQT KF KELGKFT L+ +LGGDSM+N
Sbjct: 202 AFLIPMFEKLKGHLPT-GARALILAPTRELALQTLKFTKELGKFTGLKPAVILGGDSMEN 260
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA +H +PDI++ATPGRF+HI+VEME+KLS +QY
Sbjct: 261 QFAAIHENPDILIATPGRFMHILVEMEMKLSEVQY 295
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL+L+G+DVVAMARTGSGKTA FL F
Sbjct: 179 TIPLILDGKDVVAMARTGSGKTAAFLIPMF 208
>gi|281343478|gb|EFB19062.1| hypothetical protein PANDA_014817 [Ailuropoda melanoleuca]
Length = 819
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 133/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 32 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 91
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LKT +A +G RAL+LSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 92 CFLIPMFERLKTRSAQTGARALVLSPTRELALQTMKFTKELGKFTGLRTALILGGDKMED 151
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM L+L S++Y
Sbjct: 152 QFAALHENPDIIIATPGRLVHVAVEMNLRLQSVEY 186
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 13 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 72
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 73 ILDGKDVVAMARTGSGKTACFLIPMFERL 101
>gi|410976686|ref|XP_003994747.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Felis catus]
Length = 866
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 133/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 69 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTA 128
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LKT +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD +++
Sbjct: 129 CFLIPMFERLKTRSAQTGARALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKIED 188
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PD+++ATPGR +H+ VEM LKL S++Y
Sbjct: 189 QFAALHENPDVIIATPGRLVHVAVEMNLKLQSVEY 223
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ TIP++L+G+DVVAMARTGSGKTACFL F R
Sbjct: 102 IQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFERL 138
>gi|148687811|gb|EDL19758.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Mus musculus]
Length = 855
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 90 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 149
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 150 CFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 209
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 210 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 244
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 71 TSECVSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 130
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 131 ILDGKDVVAMARTGSGKTACFLLPMFERL 159
>gi|26327389|dbj|BAC27438.1| unnamed protein product [Mus musculus]
Length = 874
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 88 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 147
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 148 CFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 207
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 208 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 242
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 69 TSECVSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 128
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 129 ILDGKDVVAMARTGSGKTACFLLPMFERL 157
>gi|28076989|ref|NP_082317.1| ATP-dependent RNA helicase DDX54 [Mus musculus]
gi|46576606|sp|Q8K4L0.1|DDX54_MOUSE RecName: Full=ATP-dependent RNA helicase DDX54; AltName: Full=DEAD
box protein 54
gi|21325958|gb|AAM47540.1|AF319547_1 ATP-dependent RNA-helicase [Mus musculus]
gi|55249609|gb|AAH43699.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Mus musculus]
Length = 874
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 88 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 147
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 148 CFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 207
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 208 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 242
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 69 TSECVSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 128
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 129 ILDGKDVVAMARTGSGKTACFLLPMFERL 157
>gi|26327531|dbj|BAC27509.1| unnamed protein product [Mus musculus]
Length = 909
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 88 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 147
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 148 CFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 207
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 208 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 242
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 69 TSECVSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 128
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 129 ILDGKDVVAMARTGSGKTACFLLPMFERL 157
>gi|300796770|ref|NP_001178477.1| ATP-dependent RNA helicase DDX54 [Rattus norvegicus]
Length = 874
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 88 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 147
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 148 CFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 207
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 208 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 242
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 69 TSECVSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 128
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 129 ILDGKDVVAMARTGSGKTACFLLPMFERL 157
>gi|431914219|gb|ELK15477.1| ATP-dependent RNA helicase DDX54 [Pteropus alecto]
Length = 942
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V +GV+K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFRGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLIPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QF+ LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFSALHENPDIIIATPGRLMHVAVEMNLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFRGVMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLIPMFERL 158
>gi|351694739|gb|EHA97657.1| ATP-dependent RNA helicase DDX54 [Heterocephalus glaber]
Length = 876
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+D VAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYLVFKGIMKKGYKVPTPIQRKTIPVILDGKDTVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LKT +A +G RALILSPTRELALQT KF KELG+FT L++ +LGGD M++
Sbjct: 149 CFLIPMFERLKTRSAQTGARALILSPTRELALQTMKFTKELGRFTGLKTALILGGDKMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLHSVEY 243
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 27/33 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L+G+D VAMARTGSGKTACFL F R
Sbjct: 126 TIPVILDGKDTVAMARTGSGKTACFLIPMFERL 158
>gi|432094964|gb|ELK26372.1| ATP-dependent RNA helicase DDX54 [Myotis davidii]
Length = 829
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+D+VAMARTGSGKTA
Sbjct: 40 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDMVAMARTGSGKTA 99
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LK +A SG RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 100 CFLIPMFERLKARSAQSGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 159
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QF+ LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 160 QFSALHENPDIIIATPGRLMHVAVEMNLKLQSVEY 194
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 21 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 80
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+D+VAMARTGSGKTACFL F R
Sbjct: 81 ILDGKDMVAMARTGSGKTACFLIPMFERL 109
>gi|442750425|gb|JAA67372.1| Putative atp-dependent rna helicase [Ixodes ricinus]
Length = 767
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 109/152 (71%), Positives = 133/152 (87%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
KK GGFQS GL +LKGVLKRGY+IPTPIQRKTIP++LEGRD+VAMARTGSGKTA FL
Sbjct: 10 KKKSGGFQSMGLSPPILKGVLKRGYQIPTPIQRKTIPVILEGRDMVAMARTGSGKTAAFL 69
Query: 93 IPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
+P+L+KLK + +G RAL+LSPTRELALQT KF KELGKFT L+ST +LGGD+M++QF
Sbjct: 70 VPILDKLKARSLQAGARALVLSPTRELALQTHKFAKELGKFTDLKSTVILGGDNMEDQFE 129
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+H +PD+++ATPGRFLHIV+EM+LKLSSI+Y
Sbjct: 130 AIHENPDVLIATPGRFLHIVMEMDLKLSSIKY 161
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/26 (84%), Positives = 25/26 (96%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
TIP++LEGRD+VAMARTGSGKTA FL
Sbjct: 44 TIPVILEGRDMVAMARTGSGKTAAFL 69
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 251 FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYVQVTDD 293
F+Q S+ LDL D +M+ KQ+ S KWD KK++V+ +D
Sbjct: 615 FEQQASQAVLDLTADDEKMLRKQK-STMKWDRKKKRFVREGND 656
>gi|348551186|ref|XP_003461411.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 2 [Cavia
porcellus]
Length = 876
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 131/155 (84%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LK + +G RAL+LSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLIPMFERLKARSGQTGARALVLSPTRELALQTMKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLIPMFERL 158
>gi|348551184|ref|XP_003461410.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 1 [Cavia
porcellus]
Length = 875
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 131/155 (84%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LK + +G RAL+LSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLIPMFERLKARSGQTGARALVLSPTRELALQTMKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 70 TSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLIPMFERL 158
>gi|149063450|gb|EDM13773.1| similar to ATP-dependent RNA-helicase (predicted) [Rattus
norvegicus]
Length = 297
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 88 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 147
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 148 CFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 207
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 208 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 242
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS D+ D+ EM+ Q + +K P KK Y + TIP+
Sbjct: 69 TSECVSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPV 128
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 129 ILDGKDVVAMARTGSGKTACFLLPMFERL 157
>gi|410904152|ref|XP_003965556.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Takifugu
rubripes]
Length = 863
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 131/155 (84%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+++GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 67 NKKKKKSGGFQSMGLSYPVYKGVMRKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 126
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FLIPM EKLK A +G RALILSPTRELALQT KF KELGKFTKL++ +LGGDSMD+
Sbjct: 127 AFLIPMFEKLKAPQAQTGARALILSPTRELALQTMKFTKELGKFTKLKTALILGGDSMDD 186
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ TPGR +H++ EM LKL +++Y
Sbjct: 187 QFAALHENPDIIIGTPGRLMHVIKEMNLKLHNMEY 221
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIP++L+G+DVVAMARTGSGKTA FL F
Sbjct: 104 TIPVILDGKDVVAMARTGSGKTAAFLIPMF 133
>gi|47223591|emb|CAF99200.1| unnamed protein product [Tetraodon nigroviridis]
Length = 532
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 131/155 (84%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL F V KGV+++GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 30 NKKKKKSGGFQSMGLSFPVFKGVMRKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 89
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FLIPM E+LK A +G RALILSPTRELALQT KF KELGKFTKL++ +LGGDSMD+
Sbjct: 90 AFLIPMFERLKAPQAQTGARALILSPTRELALQTMKFTKELGKFTKLKTALILGGDSMDD 149
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ TPGR +H++ EM LKL +++Y
Sbjct: 150 QFAALHENPDIIIGTPGRLMHVIKEMNLKLQNVEY 184
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 27/33 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L+G+DVVAMARTGSGKTA FL F R
Sbjct: 67 TIPVILDGKDVVAMARTGSGKTAAFLIPMFERL 99
>gi|328708487|ref|XP_003243704.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Acyrthosiphon
pisum]
Length = 777
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/156 (71%), Positives = 127/156 (81%), Gaps = 2/156 (1%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
K K GGFQ+ GL F VLKGVLKRGYK+PTPIQRKTIP+ LE RDVVAMARTGSGKTAC
Sbjct: 22 KTGKRSGGFQAMGLSFPVLKGVLKRGYKVPTPIQRKTIPIALENRDVVAMARTGSGKTAC 81
Query: 91 FLIPMLEKLKTHAATS--GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD 148
FLIPM EKL H G+RALILSPTRELA+QT KF+KE+GKFT L+S +LGGD M+
Sbjct: 82 FLIPMFEKLTQHTVNGHRGIRALILSPTRELAVQTLKFLKEIGKFTNLKSAVILGGDPME 141
Query: 149 NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QF+ +H++PDIVVATPGRFLH+ VEM LKL IQY
Sbjct: 142 AQFSTMHSAPDIVVATPGRFLHLCVEMSLKLPYIQY 177
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 28/39 (71%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFN 332
TIP+ LE RDVVAMARTGSGKTACFL F + + N
Sbjct: 58 TIPIALENRDVVAMARTGSGKTACFLIPMFEKLTQHTVN 96
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 260 LDLVGDSTEMIHKQRQSVRKWDPAKKKYV 288
LDL+GDS + + KQ + RKWDP KYV
Sbjct: 625 LDLMGDSEQSLAKQNSNKRKWDPVSHKYV 653
>gi|195011457|ref|XP_001983158.1| GH15746 [Drosophila grimshawi]
gi|193896640|gb|EDV95506.1| GH15746 [Drosophila grimshawi]
Length = 786
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/184 (60%), Positives = 142/184 (77%), Gaps = 9/184 (4%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
GLGFE+LKG+ KRGYK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+ EKL+
Sbjct: 1 MGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 60
Query: 102 HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIV 161
T G RALILSPTRELA+QT+KF+KELG+F +L++ +LGGDSMD+QF+ +H PD++
Sbjct: 61 REPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDVI 120
Query: 162 VATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLG-GDSMDNQFARLHASP 220
VATPGRFLH+ VEM+LKL+SI+Y F + +G G+ ++ RL AS
Sbjct: 121 VATPGRFLHLCVEMDLKLTSIEYVV--------FDEADRLFEMGFGEQLNETLNRLPASR 172
Query: 221 DIVV 224
+V+
Sbjct: 173 QMVM 176
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIPL+LEGRDVVAMA+TGSGKTACFL F + R
Sbjct: 26 TIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 60
>gi|328708524|ref|XP_001949320.2| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
[Acyrthosiphon pisum]
Length = 478
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/156 (71%), Positives = 127/156 (81%), Gaps = 2/156 (1%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
K K GGFQ+ GL F VLKGVLKRGYK+PTPIQRKTIP+ LE RDVVAMARTGSGKTAC
Sbjct: 22 KTGKRSGGFQAMGLSFPVLKGVLKRGYKVPTPIQRKTIPIALENRDVVAMARTGSGKTAC 81
Query: 91 FLIPMLEKLKTHAATS--GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD 148
FLIPM EKL H G+RALILSPTRELA+QT KF+KE+GKFT L+S +LGGD M+
Sbjct: 82 FLIPMFEKLTQHTVNGHRGIRALILSPTRELAVQTLKFLKEIGKFTNLKSAVILGGDPME 141
Query: 149 NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QF+ +H++PDIVVATPGRFLH+ VEM LKL IQY
Sbjct: 142 AQFSTMHSAPDIVVATPGRFLHLCVEMSLKLPYIQY 177
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 28/39 (71%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFN 332
TIP+ LE RDVVAMARTGSGKTACFL F + + N
Sbjct: 58 TIPIALENRDVVAMARTGSGKTACFLIPMFEKLTQHTVN 96
>gi|170045492|ref|XP_001850341.1| ATP-dependent RNA helicase DDX54 [Culex quinquefasciatus]
gi|167868515|gb|EDS31898.1| ATP-dependent RNA helicase DDX54 [Culex quinquefasciatus]
Length = 793
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/222 (58%), Positives = 157/222 (70%), Gaps = 10/222 (4%)
Query: 5 DPEDIEGFEDPTVTISSNDDN-GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPI 63
DP I GF V + +DD G G KKKK GGGFQ+ GL VLKG+LK GYK+PTPI
Sbjct: 5 DPNVIPGFSVENVDLDYDDDEPGKGGKKKKKNGGGFQAMGLAMPVLKGILKMGYKVPTPI 64
Query: 64 QRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123
QRKTIPL+LEGRDVVAMA+TGSGKT CFLIP+ EKLK G RALILSPTRELA+QT
Sbjct: 65 QRKTIPLILEGRDVVAMAKTGSGKTGCFLIPLFEKLKQREIKKGARALILSPTRELAIQT 124
Query: 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
FKF+K+LGKF L++ +LGGDSMD QFA +H PDI+VATPGRFLH+ VEM+LKLS+I+
Sbjct: 125 FKFIKQLGKFMDLKTILVLGGDSMDTQFAAIHTLPDIIVATPGRFLHLCVEMDLKLSAIK 184
Query: 184 YTFKFVKELGKFTKLQSTCLLG-GDSMDNQFARLHASPDIVV 224
Y F + +G G+ + ARL +S +V+
Sbjct: 185 YCV--------FDEADRLFEMGFGEQLTETLARLPSSRQMVL 218
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL+LEGRDVVAMA+TGSGKT CFL F
Sbjct: 68 TIPLILEGRDVVAMAKTGSGKTGCFLIPLF 97
>gi|198433176|ref|XP_002130371.1| PREDICTED: similar to ATP-dependent RNA helicase [Ciona
intestinalis]
Length = 816
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 102/155 (65%), Positives = 129/155 (83%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++KKK GGFQS GL V KGV+++GYK+PTPIQRK IPL+L +DVVAMARTGSGKTA
Sbjct: 61 NRKKKKSGGFQSMGLSHSVFKGVIRKGYKVPTPIQRKCIPLILSDKDVVAMARTGSGKTA 120
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FLIPM EKL+ + +G RAL+LSPTRELALQT KFVKELG+FT L++ C+LGGDSMD
Sbjct: 121 AFLIPMFEKLQGAQSGAGARALLLSPTRELALQTLKFVKELGRFTSLRTACILGGDSMDE 180
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QF+ +H +PD+ +ATPGR +H+++EMEL+LS+I Y
Sbjct: 181 QFSAMHENPDVTIATPGRLMHVLIEMELRLSNIHY 215
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 23/29 (79%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFF 323
IPL+L +DVVAMARTGSGKTA FL F
Sbjct: 99 IPLILSDKDVVAMARTGSGKTAAFLIPMF 127
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 249 TDFKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYVQVTD 292
T+F ++ S + LDL+GD + + +Q+ + WD KK++V D
Sbjct: 667 TNFAKEASNVTLDLIGDEDKTLRQQKMQRKVWDRKKKRFVNAQD 710
>gi|259155174|ref|NP_001158829.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
gi|223647616|gb|ACN10566.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
Length = 875
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 130/155 (83%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+K+GYK+PTPIQRKTIP++L+G+D+VAMARTGSGKTA
Sbjct: 70 NKKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILDGKDMVAMARTGSGKTA 129
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FL+PM EKLK A +G RALIL+PTRELALQT KF KELGKFT L++ +LGGD MD+
Sbjct: 130 AFLVPMFEKLKVPQAQTGARALILTPTRELALQTMKFTKELGKFTGLKTALILGGDRMDD 189
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ TPGR +H+V+EM LKL S++Y
Sbjct: 190 QFAALHENPDIIIGTPGRLMHVVMEMNLKLQSVEY 224
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIP++L+G+D+VAMARTGSGKTA FL F
Sbjct: 107 TIPVILDGKDMVAMARTGSGKTAAFLVPMF 136
>gi|27545287|ref|NP_775375.1| ATP-dependent RNA helicase DDX54 [Danio rerio]
gi|20977591|gb|AAM28223.1| ATP-dependent RNA helicase [Danio rerio]
Length = 862
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 130/155 (83%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 71 NKKKKKSGGFQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 130
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FL+P+ EKLK A +G RALIL+PTRELALQT KF KELGKFT L++ +LGGDSMD+
Sbjct: 131 AFLVPLFEKLKAPQAQTGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDD 190
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ TPGR +H++ EM LKL S++Y
Sbjct: 191 QFAALHENPDIIIGTPGRLMHVIQEMNLKLQSVEY 225
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIP++L+G+DVVAMARTGSGKTA FL F
Sbjct: 108 TIPVILDGKDVVAMARTGSGKTAAFLVPLF 137
>gi|432885908|ref|XP_004074816.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 2 [Oryzias
latipes]
Length = 853
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 129/155 (83%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 71 NKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 130
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FL+PM EKLK A++G RALI+SPTRELALQT KF KELGKF L++ +LGGD M++
Sbjct: 131 AFLVPMFEKLKAPQASAGARALIMSPTRELALQTMKFTKELGKFAGLKTALILGGDRMED 190
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ TPGR +H+V EM LKL S++Y
Sbjct: 191 QFAALHENPDIIIGTPGRLMHVVKEMNLKLHSVEY 225
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIP++L+G+DVVAMARTGSGKTA FL F
Sbjct: 108 TIPVILDGKDVVAMARTGSGKTAAFLVPMF 137
>gi|363740165|ref|XP_003642273.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54
[Gallus gallus]
Length = 858
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/153 (69%), Positives = 128/153 (83%), Gaps = 1/153 (0%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
KKK GGFQS GL + V KGV+K+GYK+PTPIQRKTIP++L GRDVVAMARTGSGKTACF
Sbjct: 67 KKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACF 126
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
L+PM E+LK + SG RALILSPTRELALQT KF KELGKFT L++ +LGGD M++QF
Sbjct: 127 LLPMFERLKA-PSPSGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQF 185
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
A LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 186 AALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 218
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 28/37 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ TIP++L GRDVVAMARTGSGKTACFL F R
Sbjct: 98 IQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERL 134
>gi|432885906|ref|XP_004074815.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 1 [Oryzias
latipes]
Length = 852
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 129/155 (83%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 70 NKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 129
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FL+PM EKLK A++G RALI+SPTRELALQT KF KELGKF L++ +LGGD M++
Sbjct: 130 AFLVPMFEKLKAPQASAGARALIMSPTRELALQTMKFTKELGKFAGLKTALILGGDRMED 189
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ TPGR +H+V EM LKL S++Y
Sbjct: 190 QFAALHENPDIIIGTPGRLMHVVKEMNLKLHSVEY 224
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIP++L+G+DVVAMARTGSGKTA FL F
Sbjct: 107 TIPVILDGKDVVAMARTGSGKTAAFLVPMF 136
>gi|348532949|ref|XP_003453968.1| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
[Oreochromis niloticus]
Length = 336
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 129/155 (83%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KGV+K+GYKIPTPIQRKT+P++L+G+DVVAMARTGSGKTA
Sbjct: 69 NKKKKKSGGFQSMGLSYPVFKGVMKKGYKIPTPIQRKTVPVILDGKDVVAMARTGSGKTA 128
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FLIPM EKLK A +G RALIL+PTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 129 AFLIPMFEKLKAPQAQTGARALILTPTRELALQTMKFTKELGKFTGLKTALILGGDRMED 188
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ TPGR +H+V+EM LKL S+ Y
Sbjct: 189 QFAALHENPDIIIGTPGRLMHVVMEMNLKLHSVAY 223
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
T+P++L+G+DVVAMARTGSGKTA FL F
Sbjct: 106 TVPVILDGKDVVAMARTGSGKTAAFLIPMF 135
>gi|326929996|ref|XP_003211139.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Meleagris gallopavo]
Length = 831
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 111/175 (63%), Positives = 134/175 (76%), Gaps = 6/175 (3%)
Query: 15 PTVTISSNDDNGNT-----GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIP 69
PT +D +T KKK GGFQS GL + V KGV+K+GYK+PTPIQRKTIP
Sbjct: 33 PTAEDRDDDTAEDTQAMVRAQNKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIP 92
Query: 70 LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129
++L GRDVVAMARTGSGKTACFL+PM E+LK + SG RALILSPTRELALQT KF KE
Sbjct: 93 VILRGRDVVAMARTGSGKTACFLLPMFERLKA-PSPSGARALILSPTRELALQTLKFTKE 151
Query: 130 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
LGKFT L++ +LGGD M++QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 152 LGKFTGLKTALVLGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLHSMEY 206
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 28/37 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ TIP++L GRDVVAMARTGSGKTACFL F R
Sbjct: 86 IQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERL 122
>gi|157121423|ref|XP_001659898.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108874627|gb|EAT38852.1| AAEL009285-PA [Aedes aegypti]
Length = 784
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 104/146 (71%), Positives = 125/146 (85%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ+ GL +LK +LK GYK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKT CFLIP+ EK
Sbjct: 40 FQAMGLSMPILKAILKMGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTGCFLIPLFEK 99
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LK SG RAL+L+PTRELA+QTFKF+K+LGKFT L++ +LGGDSMD+QFA +H P
Sbjct: 100 LKQREIKSGARALVLTPTRELAIQTFKFIKQLGKFTDLKTILVLGGDSMDSQFAAIHTLP 159
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI+VATPGRFLH+ VEM+LKLSS+QY
Sbjct: 160 DIIVATPGRFLHLCVEMDLKLSSVQY 185
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIPL+LEGRDVVAMA+TGSGKT CFL F
Sbjct: 68 TIPLILEGRDVVAMAKTGSGKTGCFLIPLF 97
>gi|291239093|ref|XP_002739459.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Saccoglossus
kowalevskii]
Length = 851
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/155 (65%), Positives = 131/155 (84%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++KKK GGFQ+ GL VLKG+ ++GYK+PTPIQRK +P++++ +DVVAMARTGSGKTA
Sbjct: 71 NRKKKKSGGFQAMGLSMGVLKGIFRKGYKVPTPIQRKCVPIIMDRKDVVAMARTGSGKTA 130
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FLIPM EKL+ H+A +G RALILSPTRELA+QT KF +ELGKF L+S +LGGD MD+
Sbjct: 131 AFLIPMFEKLQRHSAKTGARALILSPTRELAVQTLKFTRELGKFLGLRSAVILGGDKMDD 190
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR LH++VEM+LKL+S++Y
Sbjct: 191 QFAALHENPDIIIATPGRLLHVLVEMDLKLNSLEY 225
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
+P++++ +DVVAMARTGSGKTA FL F + R
Sbjct: 109 VPIIMDRKDVVAMARTGSGKTAAFLIPMFEKLQR 142
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 246 LSLTD--FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYVQVTDD 293
LS+ D F Q SR LDL GD +M+ K + ++ KWD KKK+++ D
Sbjct: 671 LSIGDCSFDQQASRAMLDLTGDDADMMKKHKDNI-KWDRKKKKFIRDAGD 719
>gi|427785439|gb|JAA58171.1| Putative atp-dependent rna helicase ddx54 [Rhipicephalus
pulchellus]
Length = 816
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 105/152 (69%), Positives = 129/152 (84%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
KK GGFQ+ GL +LKG+LKRGYK PTPIQRK IP+VLEGRDVVAMARTGSGKTA FL
Sbjct: 52 KKKSGGFQAMGLSHAILKGILKRGYKQPTPIQRKAIPVVLEGRDVVAMARTGSGKTAAFL 111
Query: 93 IPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
+P+LE+L + +G RALILSPTRELALQT KF KELGKFT L+ST +LGGDSM++QF
Sbjct: 112 VPILERLGGRSPHTGPRALILSPTRELALQTHKFAKELGKFTDLRSTVILGGDSMEDQFE 171
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+H +PD+++ATPGRFLH+V+EM L+L+S++Y
Sbjct: 172 AIHENPDLLIATPGRFLHVVMEMNLRLNSVKY 203
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 284 KKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
K+ Y Q T IP+VLEGRDVVAMARTGSGKTA FL R
Sbjct: 73 KRGYKQPTPIQRKAIPVVLEGRDVVAMARTGSGKTAAFLVPILERL 118
>gi|449268056|gb|EMC78927.1| ATP-dependent RNA helicase DDX54, partial [Columba livia]
Length = 797
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/155 (66%), Positives = 130/155 (83%), Gaps = 1/155 (0%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++KKK GGFQS GL + V KG++K+GYK+PTPIQRK+IP +L GRDVVAMARTGSGKTA
Sbjct: 15 NQKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKSIPAILRGRDVVAMARTGSGKTA 74
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LK + +G RAL+LSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 75 CFLIPMFERLKA-PSQAGARALVLSPTRELALQTLKFTKELGKFTGLKTALILGGDKMED 133
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM+LKL +++Y
Sbjct: 134 QFAALHENPDIIIATPGRLVHVAVEMKLKLHTVEY 168
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 27/37 (72%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ +IP +L GRDVVAMARTGSGKTACFL F R
Sbjct: 48 IQRKSIPAILRGRDVVAMARTGSGKTACFLIPMFERL 84
>gi|115762569|ref|XP_792708.2| PREDICTED: ATP-dependent RNA helicase DDX54-like
[Strongylocentrotus purpuratus]
Length = 889
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 107/176 (60%), Positives = 137/176 (77%), Gaps = 6/176 (3%)
Query: 15 PTVTISSNDDNGNT------GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTI 68
PT+ S+D + +T ++KKK GGFQS GL V KG++K+GYKIPTPIQRK I
Sbjct: 45 PTIDGYSSDADIDTRALVKQQNRKKKKSGGFQSMGLSHAVFKGIMKKGYKIPTPIQRKCI 104
Query: 69 PLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128
P+++EG+DVV MARTGSGKTA FL+PMLE+L+ +A SG RALILSPTRELALQT KF K
Sbjct: 105 PIIMEGQDVVGMARTGSGKTAAFLLPMLERLQRRSAQSGARALILSPTRELALQTLKFTK 164
Query: 129 ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
EL ++T L+S +LGGD MD+QFA LH +PDI++AT GR LH++VEM+LKL ++Y
Sbjct: 165 ELARYTDLRSEVILGGDRMDDQFAALHENPDILIATRGRLLHVLVEMDLKLMQVEY 220
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
IP+++EG+DVV MARTGSGKTA FL R R
Sbjct: 104 IPIIMEGQDVVGMARTGSGKTAAFLLPMLERLQR 137
>gi|340377875|ref|XP_003387454.1| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
[Amphimedon queenslandica]
Length = 1183
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 139/177 (78%), Gaps = 13/177 (7%)
Query: 21 SNDDNGNTG------------DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTI 68
S+DDN G +KKKK GGFQS GL V KGV+K+GY++PTPIQRKTI
Sbjct: 22 SDDDNEAEGGGGFTRSLVLQQNKKKKRSGGFQSMGLSHTVYKGVMKKGYRVPTPIQRKTI 81
Query: 69 PLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTRELALQTFKFV 127
PL+++G+DVVAMARTGSGKTA FLIP+ E+LK+H+ SGVR LILSPTRELALQT KF
Sbjct: 82 PLIMDGKDVVAMARTGSGKTAAFLIPLFERLKSHSPQVSGVRGLILSPTRELALQTMKFT 141
Query: 128 KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KELG+FT L++ +LGGD +++QF+ +H +PDI++ATPGRFLH+++EM++KL ++Y
Sbjct: 142 KELGRFTGLRAAVILGGDRIEDQFSTIHENPDIIIATPGRFLHLLLEMDMKLLHVEY 198
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 27/33 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPL+++G+DVVAMARTGSGKTA FL F R
Sbjct: 80 TIPLIMDGKDVVAMARTGSGKTAAFLIPLFERL 112
>gi|321464010|gb|EFX75021.1| hypothetical protein DAPPUDRAFT_306922 [Daphnia pulex]
Length = 825
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 127/155 (81%), Gaps = 1/155 (0%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++KKK GGFQS GL + V GV+K GYKIPTPIQRK IPL++E +DVVAMARTGSGKTA
Sbjct: 28 NRKKKKSGGFQSMGLSYNVYHGVMKCGYKIPTPIQRKCIPLIMEKKDVVAMARTGSGKTA 87
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIP+ E+L+ H+ T G RALI+SPTRELALQT KF +ELGKFT L++ +LGGDSM+
Sbjct: 88 CFLIPLFERLQAHS-TIGTRALIMSPTRELALQTLKFTRELGKFTGLKAATILGGDSMEA 146
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA +H PDI++ATPGRF H+ VEMELKL I+Y
Sbjct: 147 QFAAMHEIPDIIIATPGRFAHLCVEMELKLKEIEY 181
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 26/32 (81%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IPL++E +DVVAMARTGSGKTACFL F R
Sbjct: 66 IPLIMEKKDVVAMARTGSGKTACFLIPLFERL 97
>gi|339238715|ref|XP_003380912.1| ATP-dependent RNA helicase RhlE [Trichinella spiralis]
gi|316976123|gb|EFV59462.1| ATP-dependent RNA helicase RhlE [Trichinella spiralis]
Length = 182
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 130/157 (82%), Gaps = 1/157 (0%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++K K GGFQ+ GL V KG++K+GYKIPTPIQRKTIP++L G+DVVAMARTGSGKTA
Sbjct: 19 NRKNKSSGGFQAMGLDHNVFKGIMKKGYKIPTPIQRKTIPIILNGKDVVAMARTGSGKTA 78
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE-LGKFTKLQSTCLLGGDSMD 148
FLIPM KLK ++GVRA+I+SPTRELALQTFKF+KE LGKFT L+++ ++GGDSM+
Sbjct: 79 AFLIPMFVKLKMRDPSAGVRAMIISPTRELALQTFKFLKEVLGKFTGLRASVIIGGDSME 138
Query: 149 NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
+QFA +H +PD+V+ATPGR LH++VEM L L S+ Y
Sbjct: 139 DQFAAIHENPDVVIATPGRLLHLIVEMNLSLKSVNYV 175
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L G+DVVAMARTGSGKTA FL F +
Sbjct: 56 TIPIILNGKDVVAMARTGSGKTAAFLIPMFVKL 88
>gi|326435254|gb|EGD80824.1| hypothetical protein PTSG_11725 [Salpingoeca sp. ATCC 50818]
Length = 818
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 98/148 (66%), Positives = 127/148 (85%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGFQS GL V +G++ +GYK+PTPIQRKTIPL++ G+DVV MARTGSGKTA F+IPML
Sbjct: 36 GGFQSMGLSRGVFRGIMDKGYKVPTPIQRKTIPLIIGGQDVVGMARTGSGKTAAFVIPML 95
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
EKLK+H+A G+RAL++SPTRELA QTFKF+KELG+ T L+ +LGGD+MD+QF +HA
Sbjct: 96 EKLKSHSAKVGIRALVMSPTRELAEQTFKFIKELGRRTDLRVALILGGDNMDDQFGWMHA 155
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY 184
+PD++VATPGRFLH++VEMEL L +++Y
Sbjct: 156 NPDVIVATPGRFLHLLVEMELSLKAVEY 183
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 55/68 (80%)
Query: 183 QYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 242
+ TFKF+KELG+ T L+ +LGGD+MD+QF +HA+PD++VATPGRFLH++VEMEL L
Sbjct: 120 EQTFKFIKELGRRTDLRVALILGGDNMDDQFGWMHANPDVIVATPGRFLHLLVEMELSLK 179
Query: 243 SIQLSLTD 250
+++ + D
Sbjct: 180 AVEYVVFD 187
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL++ G+DVV MARTGSGKTA F+
Sbjct: 66 TIPLIIGGQDVVGMARTGSGKTAAFVI 92
>gi|167518760|ref|XP_001743720.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777682|gb|EDQ91298.1| predicted protein [Monosiga brevicollis MX1]
Length = 787
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/148 (67%), Positives = 125/148 (84%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
G FQ+ GL V + + ++GYK+PTPIQRKTIPL++ G+DVVAMARTGSGKTA FLIP+
Sbjct: 2 GAFQAMGLSQAVARAINRKGYKVPTPIQRKTIPLLMAGQDVVAMARTGSGKTAAFLIPLF 61
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
E+LK H+A G+RAL+LSPTRELALQTFKFVKELG+F+ L+S +LGGDSMD+QF +H
Sbjct: 62 ERLKNHSARVGIRALVLSPTRELALQTFKFVKELGRFSDLRSILILGGDSMDSQFGDMHT 121
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY 184
+PDIVVATPGRFLH++VEMEL L + +Y
Sbjct: 122 NPDIVVATPGRFLHLIVEMELSLVTTEY 149
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPL++ G+DVVAMARTGSGKTA FL F R
Sbjct: 32 TIPLLMAGQDVVAMARTGSGKTAAFLIPLFERL 64
>gi|320163598|gb|EFW40497.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1198
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/183 (54%), Positives = 137/183 (74%), Gaps = 6/183 (3%)
Query: 2 KKKDPEDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPT 61
K + +D +G +D + N +KK GGFQS GL + + + + K+GYK+PT
Sbjct: 228 KSRGKQDEDGSDDESAV------NNAKAQNRKKSSGGFQSLGLSYNIFRAIGKKGYKVPT 281
Query: 62 PIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121
PIQRKT+PL+LEG+DVVAMARTGSGKTA FL+P+LEKL++H +G RALILSPTRELA+
Sbjct: 282 PIQRKTMPLLLEGKDVVAMARTGSGKTAAFLVPLLEKLQSHVPGTGCRALILSPTRELAM 341
Query: 122 QTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSS 181
QT KF +L FT L++ ++GG+S++ QFA +H +PDIV+ATPGRFLH+V+EM L+L +
Sbjct: 342 QTHKFCNDLSSFTNLRTRLIVGGESLEQQFAAMHENPDIVIATPGRFLHVVMEMNLRLQA 401
Query: 182 IQY 184
+QY
Sbjct: 402 VQY 404
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/26 (84%), Positives = 25/26 (96%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
T+PL+LEG+DVVAMARTGSGKTA FL
Sbjct: 287 TMPLLLEGKDVVAMARTGSGKTAAFL 312
>gi|195429198|ref|XP_002062651.1| GK17652 [Drosophila willistoni]
gi|194158736|gb|EDW73637.1| GK17652 [Drosophila willistoni]
Length = 782
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 97/143 (67%), Positives = 125/143 (87%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
GL +++KG+ KRGYK+PTPIQRKTIP++LEGRDVVAMA+TGSGKTACFLIP+ E+L+
Sbjct: 1 MGLNQDLVKGITKRGYKVPTPIQRKTIPMILEGRDVVAMAKTGSGKTACFLIPLFERLQR 60
Query: 102 HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIV 161
T G RALILSPTRELA+QT+KF+KELG+F +L++ +LGGDSMD+QF+ +H PD++
Sbjct: 61 REPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDVI 120
Query: 162 VATPGRFLHIVVEMELKLSSIQY 184
VATPGRFLH+ VEM+LKL+SI+Y
Sbjct: 121 VATPGRFLHLCVEMDLKLNSIEY 143
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIP++LEGRDVVAMA+TGSGKTACFL F R R
Sbjct: 26 TIPMILEGRDVVAMAKTGSGKTACFLIPLFERLQR 60
>gi|118777945|ref|XP_308366.3| AGAP007511-PA [Anopheles gambiae str. PEST]
gi|116132145|gb|EAA04660.3| AGAP007511-PA [Anopheles gambiae str. PEST]
Length = 816
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/148 (68%), Positives = 126/148 (85%), Gaps = 2/148 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ+ GL VLKG+LK GYKIPTPIQRKTIP++L+GRDVVAMA+TGSGKT CFLIPM E+
Sbjct: 40 FQAMGLSAPVLKGILKMGYKIPTPIQRKTIPIILDGRDVVAMAKTGSGKTGCFLIPMFER 99
Query: 99 LKTHAATS--GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
LK A + G RALILSPTRELA+QT+KF+K+LG+F L++ +LGGDSMD+QFA +H
Sbjct: 100 LKQREAKAGGGARALILSPTRELAIQTYKFIKQLGRFMDLKAILVLGGDSMDSQFAAVHT 159
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY 184
PD++VATPGRFLH+ VEM+LKL+S+QY
Sbjct: 160 LPDVIVATPGRFLHLCVEMDLKLNSVQY 187
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 27/33 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L+GRDVVAMA+TGSGKT CFL F R
Sbjct: 68 TIPIILDGRDVVAMAKTGSGKTGCFLIPMFERL 100
>gi|256074321|ref|XP_002573474.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353228911|emb|CCD75082.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 829
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/266 (45%), Positives = 166/266 (62%), Gaps = 27/266 (10%)
Query: 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGK 87
T ++K + GGFQS GL G++K+GYKIPTPIQRK IP++L GRDVV+MARTGSGK
Sbjct: 21 TMNRKNRKAGGFQSMGLSVATFNGIIKKGYKIPTPIQRKAIPIILSGRDVVSMARTGSGK 80
Query: 88 TACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
TA FLIP+ EK H+ +G RALI+SPTRELA+QT F KELGKFT L++T +LGGD M
Sbjct: 81 TAAFLIPLFEKFPCHSP-AGPRALIMSPTRELAIQTLNFTKELGKFTPLKATIILGGDKM 139
Query: 148 DNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF--------------KFVKELG 193
+ QFA LH SPDI++ATPGRFLH+++EM L L SI+Y + + L
Sbjct: 140 EEQFAALHKSPDIIIATPGRFLHVLMEMNLSLKSIEYVVFDEGDRLFELGFAEQLSETLK 199
Query: 194 KFTKLQSTCLLGGDSMDN--QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTDF 251
+ + + T + N +FAR I++ LH + +LKL+ I T
Sbjct: 200 RLPRSRQTLIFSATLPKNLVEFARAGLVDPILLRLD---LHSKLSQDLKLAHI----TCL 252
Query: 252 KQDTSRIALDLVGDSTEMIHKQRQSV 277
++ + I + L+G ++IHK Q+V
Sbjct: 253 PEEKNVILVHLLG---KVIHKDEQAV 275
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IP++L GRDVV+MARTGSGKTA FL F +F
Sbjct: 60 AIPIILSGRDVVSMARTGSGKTAAFLIPLFEKF 92
>gi|226468478|emb|CAX69916.1| hypotherical protein [Schistosoma japonicum]
Length = 259
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 127/158 (80%), Gaps = 1/158 (0%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N+ ++K K GGFQ+ GL G++K+GYK+PTPIQRKTIP++L GRDVVAMARTGSG
Sbjct: 20 NSMNRKNKKSGGFQAMGLSSATFNGIIKKGYKLPTPIQRKTIPIILSGRDVVAMARTGSG 79
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA FLIP+ EK H T G RALI+SPTRELALQT F KELG++T L++T +LGGD
Sbjct: 80 KTAAFLIPLFEKFPCHLPT-GPRALIVSPTRELALQTLNFTKELGRYTPLKATVILGGDK 138
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
M++QFA LH+SPDI++ATPGRFLHI++EM L L +I+Y
Sbjct: 139 MEDQFAALHSSPDIIIATPGRFLHILMEMNLSLKTIEY 176
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L GRDVVAMARTGSGKTA FL F +F
Sbjct: 60 TIPIILSGRDVVAMARTGSGKTAAFLIPLFEKF 92
>gi|449477372|ref|XP_004176637.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Taeniopygia guttata]
Length = 849
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/155 (65%), Positives = 126/155 (81%), Gaps = 1/155 (0%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++KKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP +L GRDVVAMARTGSGKTA
Sbjct: 55 NQKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPAILRGRDVVAMARTGSGKTA 114
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFLIPM E+LK + +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 115 CFLIPMFERLKA-PSQAGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMED 173
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PD+ V T GR +H+ VEM+ KL +++Y
Sbjct: 174 QFAALHENPDMXVGTTGRLVHVAVEMKQKLHTVEY 208
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 27/37 (72%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ TIP +L GRDVVAMARTGSGKTACFL F R
Sbjct: 88 IQRKTIPAILRGRDVVAMARTGSGKTACFLIPMFERL 124
>gi|407926601|gb|EKG19568.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 913
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 134/165 (81%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N + N + K GGGFQ+ GL VLK + ++G+ +PTPIQRKTIPLVL+G+DVV
Sbjct: 72 AANRKSSNLKGRTVKKGGGFQAMGLNANVLKAITRKGFSVPTPIQRKTIPLVLDGQDVVG 131
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+E+LK H+A G RA+I+SP+RELALQT K VKELG+ T L++
Sbjct: 132 MARTGSGKTAAFVIPMIERLKAHSAKVGARAIIMSPSRELALQTLKVVKELGRGTDLRTV 191
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS+++QFA ++++PDI++ATPGRFLH+ VEMEL LS+++Y
Sbjct: 192 LLVGGDSLEDQFADMNSNPDIIIATPGRFLHLKVEMELDLSTVRY 236
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPLVL+G+DVV MARTGSGKTA F+ R
Sbjct: 119 TIPLVLDGQDVVGMARTGSGKTAAFVIPMIERL 151
>gi|367045536|ref|XP_003653148.1| hypothetical protein THITE_2115255 [Thielavia terrestris NRRL 8126]
gi|347000410|gb|AEO66812.1| hypothetical protein THITE_2115255 [Thielavia terrestris NRRL 8126]
Length = 938
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 104/165 (63%), Positives = 128/165 (77%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
SSN N K K GGGFQ+ GL +L+ + ++G+ +PTPIQRKTIPL+LE RDVV
Sbjct: 83 SSNRKASNLQGKTVKKGGGFQAMGLNANLLRAITRKGFSVPTPIQRKTIPLILERRDVVG 142
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+E+LK H+A G RALILSP+RELALQT K VKELGK T L++
Sbjct: 143 MARTGSGKTAAFVIPMIERLKAHSARVGARALILSPSRELALQTLKVVKELGKGTDLRTV 202
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + A+PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 203 LLVGGDSLEEQFGLMAANPDIVIATPGRFLHLKVEMSLDLSSIKY 247
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 50/66 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELGK T L++ L+GGDS++ QF + A+PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 186 TLKVVKELGKGTDLRTVLLVGGDSLEEQFGLMAANPDIVIATPGRFLHLKVEMSLDLSSI 245
Query: 245 QLSLTD 250
+ + D
Sbjct: 246 KYVVFD 251
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPL+LE RDVV MARTGSGKTA F+ R
Sbjct: 130 TIPLILERRDVVGMARTGSGKTAAFVIPMIERL 162
>gi|171690518|ref|XP_001910184.1| hypothetical protein [Podospora anserina S mat+]
gi|170945207|emb|CAP71318.1| unnamed protein product [Podospora anserina S mat+]
Length = 924
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 108/180 (60%), Positives = 134/180 (74%), Gaps = 1/180 (0%)
Query: 5 DPEDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQ 64
+ ED E F T SN + N K K GGGFQ+ GL +L+ + K+G+ +PTPIQ
Sbjct: 57 NAEDDEDF-IATAQRKSNRKSSNVQGKSVKKGGGFQAMGLNANLLRAITKKGFSVPTPIQ 115
Query: 65 RKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124
RKTIPLVLE RDVV MARTGSGKTA F+IPM+E+LK H+ G RALILSP+RELALQT
Sbjct: 116 RKTIPLVLERRDVVGMARTGSGKTAAFVIPMIERLKGHSPKVGARALILSPSRELALQTL 175
Query: 125 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
K VKELG+ T L++ L+GGDS++ QFA++ +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 176 KVVKELGRGTDLKTILLVGGDSLEEQFAQMATNPDIVIATPGRFLHLKVEMNLNLSSIKY 235
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L++ L+GGDS++ QFA++ +PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 174 TLKVVKELGRGTDLKTILLVGGDSLEEQFAQMATNPDIVIATPGRFLHLKVEMNLNLSSI 233
Query: 245 QLSLTD 250
+ + D
Sbjct: 234 KYVVFD 239
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPLVLE RDVV MARTGSGKTA F+ R
Sbjct: 118 TIPLVLERRDVVGMARTGSGKTAAFVIPMIERL 150
>gi|391345925|ref|XP_003747233.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Metaseiulus
occidentalis]
Length = 805
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 6/177 (3%)
Query: 13 EDPTVTISSNDD-NGNTGDK-----KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRK 66
E P V S DD G +K KK GGFQS GL +LKG+ K+GY+ PTPIQRK
Sbjct: 27 ERPDVNSDSEDDMKGFDAEKLSAAESKKRTGGFQSLGLNPSLLKGIQKKGYRQPTPIQRK 86
Query: 67 TIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126
IP +LE RDVVAMARTGSGKTA FL+PM E LKTH+ +G RALI+SPTRELA+QT KF
Sbjct: 87 AIPPILERRDVVAMARTGSGKTAAFLLPMFEILKTHSPVTGGRALIISPTRELAIQTHKF 146
Query: 127 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
KELGKFT L+S +LGGDS+D+QFA +H +PDI++ TPGR LH+V+EM L L I+
Sbjct: 147 CKELGKFTDLRSVVILGGDSLDDQFAAMHENPDIIIGTPGRLLHLVMEMNLNLRMIE 203
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 7/51 (13%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
Q++ R+ P ++K IP +LE RDVVAMARTGSGKTA FL F
Sbjct: 73 QKKGYRQPTPIQRK-------AIPPILERRDVVAMARTGSGKTAAFLLPMF 116
>gi|449675652|ref|XP_002156296.2| PREDICTED: ATP-dependent RNA helicase DDX54-like [Hydra
magnipapillata]
Length = 802
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 101/169 (59%), Positives = 134/169 (79%), Gaps = 8/169 (4%)
Query: 23 DDNGNTGD------KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD 76
DD GD KK+K GGFQS G + + KG++++GYK+PTPIQRKTIP++++G+D
Sbjct: 103 DDKLEVGDLAKEQRKKQKKTGGFQSMGFSYAIYKGIIRKGYKVPTPIQRKTIPVLMDGKD 162
Query: 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136
VVAMARTGSGKTA FL+P+ +KL+TH+ +G R LILSPTRELA+QT KF KELGKFT L
Sbjct: 163 VVAMARTGSGKTAAFLLPLFQKLQTHSP-NGSRGLILSPTRELAIQTLKFAKELGKFTTL 221
Query: 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQY 184
+ +LGGDS++ QF+ LH +PDI++ATPGRFLH++VEM++ KL I+Y
Sbjct: 222 KFAIILGGDSLEEQFSALHQNPDIIIATPGRFLHLLVEMDIKKLEFIEY 270
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIP++++G+DVVAMARTGSGKTA FL F
Sbjct: 153 TIPVLMDGKDVVAMARTGSGKTAAFLLPLF 182
>gi|312379831|gb|EFR25992.1| hypothetical protein AND_08228 [Anopheles darlingi]
Length = 803
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/148 (67%), Positives = 123/148 (83%), Gaps = 2/148 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ+ GL VLKG+LK GYK+PTPIQRKTIP++++GRDVVAMA+TGSGKT FLIPM EK
Sbjct: 39 FQAMGLSAPVLKGILKMGYKVPTPIQRKTIPIIMDGRDVVAMAKTGSGKTGSFLIPMFEK 98
Query: 99 LKTHAATSG--VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L+ A +G RALILSPTRELA+QTF+F+K+LG+F L++ +LGGDSMD QFA +H
Sbjct: 99 LRQREAKAGGGARALILSPTRELAIQTFRFIKQLGRFMDLKTILVLGGDSMDAQFAAVHT 158
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY 184
PDI+VATPGRFLH+ VEM+LKL S+QY
Sbjct: 159 LPDIIVATPGRFLHLCVEMDLKLGSVQY 186
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 25/30 (83%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIP++++GRDVVAMA+TGSGKT FL F
Sbjct: 67 TIPIIMDGRDVVAMAKTGSGKTGSFLIPMF 96
>gi|116196072|ref|XP_001223848.1| hypothetical protein CHGG_04634 [Chaetomium globosum CBS 148.51]
gi|118575168|sp|Q2H0R2.1|DBP10_CHAGB RecName: Full=ATP-dependent RNA helicase DBP10
gi|88180547|gb|EAQ88015.1| hypothetical protein CHGG_04634 [Chaetomium globosum CBS 148.51]
Length = 762
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/165 (60%), Positives = 128/165 (77%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
SSN G+ K K GGFQ+ GL +L+ + ++G+ +PTPIQRKTIPLVLE RDVV
Sbjct: 69 SSNRKTGSLQSKSAKKSGGFQAMGLNSNLLRAISRKGFSVPTPIQRKTIPLVLERRDVVG 128
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+E+LK H+A G RA+I+SP+RELALQT K VKELGK T L++
Sbjct: 129 MARTGSGKTAAFVIPMIERLKAHSARVGARAIIMSPSRELALQTLKVVKELGKGTDLKTV 188
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + A+PDI++ATPGRFLH+ VEM L LSS++Y
Sbjct: 189 LLVGGDSLEEQFGLMAANPDIIIATPGRFLHLKVEMSLNLSSVRY 233
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPLVLE RDVV MARTGSGKTA F+ R
Sbjct: 116 TIPLVLERRDVVGMARTGSGKTAAFVIPMIERL 148
>gi|340960309|gb|EGS21490.1| hypothetical protein CTHT_0033480 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 924
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/165 (61%), Positives = 128/165 (77%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
SSN + N K K GGGFQ+ GL +L+ + ++G+ +PTPIQRKTIPL+LE RDVV
Sbjct: 73 SSNRKSSNLQGKTVKKGGGFQAMGLDANLLRAIARKGFSVPTPIQRKTIPLILERRDVVG 132
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+E+LK H+A G RAL+LSP+RELALQT K VKELGK T L++
Sbjct: 133 MARTGSGKTAAFVIPMIERLKAHSARFGARALVLSPSRELALQTLKVVKELGKGTDLKTV 192
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 193 LLVGGDSLEEQFGLMATNPDIIIATPGRFLHLKVEMSLDLSSIKY 237
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELGK T L++ L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 176 TLKVVKELGKGTDLKTVLLVGGDSLEEQFGLMATNPDIIIATPGRFLHLKVEMSLDLSSI 235
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 236 KYVV--FDEADRLFEMGFAAQLTEILH 260
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPL+LE RDVV MARTGSGKTA F+ R
Sbjct: 120 TIPLILERRDVVGMARTGSGKTAAFVIPMIERL 152
>gi|345570653|gb|EGX53474.1| hypothetical protein AOL_s00006g340 [Arthrobotrys oligospora ATCC
24927]
Length = 946
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 130/165 (78%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N K K GGFQS GL ++LK + ++G+ +PTPIQRKTIPL+LEG+DVV
Sbjct: 85 SANRKASNIKSKSIKKSGGFQSMGLNLQLLKAIQRKGFSVPTPIQRKTIPLLLEGQDVVG 144
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F++PM+EKLK H+A G RAL++SP+RELALQT K VK++ + T L++
Sbjct: 145 MARTGSGKTAAFVVPMIEKLKAHSAKVGARALVMSPSRELALQTLKVVKDISRGTDLKAI 204
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS+++QF+ + +PDI++ATPGRFLH+ VEMEL LSS+QY
Sbjct: 205 LLVGGDSLEDQFSMMTTNPDIIIATPGRFLHLKVEMELDLSSMQY 249
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 24/26 (92%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
TIPL+LEG+DVV MARTGSGKTA F+
Sbjct: 132 TIPLLLEGQDVVGMARTGSGKTAAFV 157
>gi|384495385|gb|EIE85876.1| hypothetical protein RO3G_10586 [Rhizopus delemar RA 99-880]
Length = 958
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 99/177 (55%), Positives = 130/177 (73%), Gaps = 9/177 (5%)
Query: 17 VTISSNDDNGN---------TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKT 67
+ +S +DD + ++K K GGFQS GL + K VL +G+K+PTPIQRK
Sbjct: 130 IKVSESDDEQDEKFIASETMAANRKNKKSGGFQSMGLSNPIFKAVLHKGFKVPTPIQRKC 189
Query: 68 IPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127
IPLVL+G DVV MARTGSGKTA FLIPMLE+LK H+A +G R+L+LSP+RELALQT K
Sbjct: 190 IPLVLQGDDVVGMARTGSGKTAAFLIPMLERLKAHSAKTGARSLVLSPSRELALQTQKVC 249
Query: 128 KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KEL K+T L+S C++GGDS+D QF + ++PDI++ATPGR LH+ VEM L L +++Y
Sbjct: 250 KELMKYTDLRSCCIVGGDSLDEQFEMIASNPDILIATPGRLLHLAVEMNLDLRTVEY 306
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 23/32 (71%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IPLVL+G DVV MARTGSGKTA FL R
Sbjct: 190 IPLVLQGDDVVGMARTGSGKTAAFLIPMLERL 221
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 204 LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ--------LSLT---DFK 252
LGGD +++ A+ +I A + + E LS Q S+T +F
Sbjct: 721 LGGDVEEDELAKTF---NIPAARENKKKQSFRDEEYYLSYTQKDANTERGYSMTSKGNFA 777
Query: 253 QDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGS 312
+ S+ LDL+GD + I K+ Q++ +WD KKK+V+ T G D M RT S
Sbjct: 778 EQASKAQLDLIGDDQDGI-KKNQNMLRWDSKKKKFVRGTGI-------GSDNKKMIRTES 829
Query: 313 G 313
G
Sbjct: 830 G 830
>gi|325094395|gb|EGC47705.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus H88]
Length = 941
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 101/165 (61%), Positives = 129/165 (78%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N N + K GGGFQS GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV
Sbjct: 69 AANRKASNLKGRTVKKGGGFQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVG 128
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+A G RALILSP+RELALQT K VKELG+ T L+S
Sbjct: 129 MARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSV 188
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 189 LLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSIRY 233
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+S L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 172 TLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSI 231
Query: 245 QLSLTD 250
+ + D
Sbjct: 232 RYVVFD 237
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKTA F+
Sbjct: 116 TIPLVLDDQDVVGMARTGSGKTAAFVI 142
>gi|225558604|gb|EEH06888.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus G186AR]
Length = 940
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 101/165 (61%), Positives = 129/165 (78%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N N + K GGGFQS GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV
Sbjct: 71 AANRKASNLKGRTVKKGGGFQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVG 130
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+A G RALILSP+RELALQT K VKELG+ T L+S
Sbjct: 131 MARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSV 190
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 191 LLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSIRY 235
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+S L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 174 TLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSI 233
Query: 245 QLSLTD 250
+ + D
Sbjct: 234 RYVVFD 239
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKTA F+
Sbjct: 118 TIPLVLDDQDVVGMARTGSGKTAAFVI 144
>gi|367022384|ref|XP_003660477.1| hypothetical protein MYCTH_2298870 [Myceliophthora thermophila ATCC
42464]
gi|347007744|gb|AEO55232.1| hypothetical protein MYCTH_2298870 [Myceliophthora thermophila ATCC
42464]
Length = 926
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/165 (60%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
SSN + N K K GGGFQ+ GL +L+ + ++G+ +PTPIQRKTIPL+L+ RDVV
Sbjct: 74 SSNRKSSNLQGKTVKKGGGFQAMGLNANLLRAITRKGFSVPTPIQRKTIPLILDKRDVVG 133
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+E LK H+A G RALILSP+RELALQT K VKELG+ T L++
Sbjct: 134 MARTGSGKTAAFVIPMIEHLKAHSARVGARALILSPSRELALQTLKVVKELGRGTDLKTV 193
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 194 LLVGGDSLEEQFGLMATNPDIIIATPGRFLHLKVEMSLDLSSIRY 238
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ RDVV MARTGSGKTA F+
Sbjct: 121 TIPLILDKRDVVGMARTGSGKTAAFVI 147
>gi|67516603|ref|XP_658187.1| hypothetical protein AN0583.2 [Aspergillus nidulans FGSC A4]
gi|74681494|sp|Q5BFU7.1|DBP10_EMENI RecName: Full=ATP-dependent RNA helicase dbp10
gi|40747526|gb|EAA66682.1| hypothetical protein AN0583.2 [Aspergillus nidulans FGSC A4]
gi|259489152|tpe|CBF89188.1| TPA: ATP-dependent RNA helicase dbp10 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5BFU7] [Aspergillus
nidulans FGSC A4]
Length = 936
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/178 (58%), Positives = 132/178 (74%), Gaps = 1/178 (0%)
Query: 7 EDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRK 66
ED E F T S+N + N + K GGGFQ+ GL +LK + ++G+ +PTPIQRK
Sbjct: 62 EDDEAFIAEKQT-SANRKSANLKGRTVKKGGGFQAMGLNANLLKAIARKGFSVPTPIQRK 120
Query: 67 TIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126
TIP+++E +DVV MARTGSGKTA F+IPM+EKLK+H+ G R LILSP+RELALQT K
Sbjct: 121 TIPVIMEDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKFGARGLILSPSRELALQTLKV 180
Query: 127 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
VKELGK T L+S L+GGDS++ QF + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 181 VKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFLHLKVEMNLDLSSIKY 238
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELGK T L+S L+GGDS++ QF + +PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 177 TLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFLHLKVEMNLDLSSI 236
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 237 KYVV--FDEADRLFEMGFAAQLTEILH 261
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP+++E +DVV MARTGSGKTA F+
Sbjct: 121 TIPVIMEDQDVVGMARTGSGKTAAFVI 147
>gi|391865804|gb|EIT75083.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 928
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 128/165 (77%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++G+DVV
Sbjct: 72 SANRKASNLKGRTVKKGGGFQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVG 131
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ G R LILSP+RELALQT K VKELGK T L+S
Sbjct: 132 MARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGKGTDLKSV 191
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 192 LLVGGDSLEEQFSLMAGNPDIVIATPGRFLHLKVEMNLDLSSIRY 236
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 50/66 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELGK T L+S L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 175 TLKVVKELGKGTDLKSVLLVGGDSLEEQFSLMAGNPDIVIATPGRFLHLKVEMNLDLSSI 234
Query: 245 QLSLTD 250
+ + D
Sbjct: 235 RYVVFD 240
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP++++G+DVV MARTGSGKTA F+
Sbjct: 119 TIPVIMDGQDVVGMARTGSGKTAAFVI 145
>gi|169773155|ref|XP_001821046.1| ATP-dependent RNA helicase DBP10 [Aspergillus oryzae RIB40]
gi|238491104|ref|XP_002376789.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
NRRL3357]
gi|91208275|sp|Q2UHC1.1|DBP10_ASPOR RecName: Full=ATP-dependent RNA helicase dbp10
gi|83768907|dbj|BAE59044.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697202|gb|EED53543.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
NRRL3357]
Length = 929
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 128/165 (77%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++G+DVV
Sbjct: 72 SANRKASNLKGRTVKKGGGFQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVG 131
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ G R LILSP+RELALQT K VKELGK T L+S
Sbjct: 132 MARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGKGTDLKSV 191
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 192 LLVGGDSLEEQFSLMAGNPDIVIATPGRFLHLKVEMNLDLSSIRY 236
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 50/66 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELGK T L+S L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 175 TLKVVKELGKGTDLKSVLLVGGDSLEEQFSLMAGNPDIVIATPGRFLHLKVEMNLDLSSI 234
Query: 245 QLSLTD 250
+ + D
Sbjct: 235 RYVVFD 240
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP++++G+DVV MARTGSGKTA F+
Sbjct: 119 TIPVIMDGQDVVGMARTGSGKTAAFVI 145
>gi|154286484|ref|XP_001544037.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|160380603|sp|A6QUM7.1|DBP10_AJECN RecName: Full=ATP-dependent RNA helicase DBP10
gi|150407678|gb|EDN03219.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 900
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/165 (61%), Positives = 129/165 (78%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N N + K GGGFQS GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV
Sbjct: 69 AANRKASNLRGRTVKKGGGFQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVG 128
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+A G RALILSP+RELALQT K VKELG+ T L+S
Sbjct: 129 MARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSV 188
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 189 LLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSIRY 233
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+S L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 172 TLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSI 231
Query: 245 QLSLTD 250
+ + D
Sbjct: 232 RYVVFD 237
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKTA F+
Sbjct: 116 TIPLVLDDQDVVGMARTGSGKTAAFVI 142
>gi|255956777|ref|XP_002569141.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590852|emb|CAP97066.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 913
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/165 (58%), Positives = 130/165 (78%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++ +DVV
Sbjct: 68 SANRKGANLKGRTVKKGGGFQAMGLSMTLLKAITRKGFSVPTPIQRKTIPVIMDDKDVVG 127
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ T G RALI+SP+RELALQT K VKE+GK T L S
Sbjct: 128 MARTGSGKTASFVIPMIEKLKSHSTTFGARALIMSPSRELALQTMKVVKEMGKGTNLTSV 187
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS+++QF + ++PDI++ATPGRFLH+ VEM++ LSSI+Y
Sbjct: 188 LLIGGDSLEDQFGMMASNPDIIIATPGRFLHLKVEMDMDLSSIKY 232
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP++++ +DVV MARTGSGKTA F+
Sbjct: 115 TIPVIMDDKDVVGMARTGSGKTASFVI 141
>gi|378726362|gb|EHY52821.1| ATP-dependent RNA helicase dbp10 [Exophiala dermatitidis
NIH/UT8656]
Length = 931
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/181 (55%), Positives = 133/181 (73%), Gaps = 4/181 (2%)
Query: 8 DIEGFEDPTVTIS----SNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPI 63
D G +D T+ + SN N + K GGGFQ+ GL +LK + ++G+ +PTPI
Sbjct: 53 DESGLDDETIIAAQLAASNRKGANLKGRTVKKGGGFQAMGLNANLLKAITRKGFSVPTPI 112
Query: 64 QRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123
QRKTIPL+L +DVV MARTGSGKTA F+IPM+EKLK H++ G RALI+SP+RELALQT
Sbjct: 113 QRKTIPLLLNDKDVVGMARTGSGKTAAFVIPMIEKLKAHSSKVGARALIMSPSRELALQT 172
Query: 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ VKELGK T L+S L+GGDS++ QF+ + +PDI++ATPGRFLH+ VEM L LSS++
Sbjct: 173 LQVVKELGKGTDLRSILLVGGDSLEQQFSAMANNPDIIIATPGRFLHLKVEMSLDLSSMK 232
Query: 184 Y 184
Y
Sbjct: 233 Y 233
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L +DVV MARTGSGKTA F+
Sbjct: 116 TIPLLLNDKDVVGMARTGSGKTAAFVI 142
>gi|115397285|ref|XP_001214234.1| hypothetical protein ATEG_05056 [Aspergillus terreus NIH2624]
gi|121738336|sp|Q0CMM8.1|DBP10_ASPTN RecName: Full=ATP-dependent RNA helicase dbp10
gi|114192425|gb|EAU34125.1| hypothetical protein ATEG_05056 [Aspergillus terreus NIH2624]
Length = 928
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++ RDVV
Sbjct: 72 SANRKAANLKGRTVKKGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMDDRDVVG 131
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H++ G R LILSP+RELALQT K VKELGK T L+S
Sbjct: 132 MARTGSGKTAAFVIPMIEKLKSHSSKFGARGLILSPSRELALQTLKVVKELGKGTDLKSV 191
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 192 LLVGGDSLEEQFGMMAGNPDIVIATPGRFLHLKVEMNLDLSSIRY 236
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELGK T L+S L+GGDS++ QF + +PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 175 TLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFLHLKVEMNLDLSSI 234
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 235 RYVV--FDEADRLFEMGFAAQLTEILH 259
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP++++ RDVV MARTGSGKTA F+
Sbjct: 119 TIPVIMDDRDVVGMARTGSGKTAAFVI 145
>gi|358393875|gb|EHK43276.1| hypothetical protein TRIATDRAFT_32758 [Trichoderma atroviride IMI
206040]
Length = 903
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/151 (64%), Positives = 123/151 (81%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPLVLE RDVV MARTGSGKTA F+I
Sbjct: 81 KKGGGFQAMGLNANILKAIARKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKTAAFVI 140
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+E+L+ H++ G RALILSP+RELA+QT K VKELG+ T L++ L+GGDS++ QF
Sbjct: 141 PMIERLRAHSSKFGARALILSPSRELAIQTLKVVKELGRGTDLKAVLLVGGDSLEEQFGF 200
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 201 MSANPDIVIATPGRFLHLKVEMNLDLSSIKY 231
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPLVLE RDVV MARTGSGKTA F+ R
Sbjct: 114 TIPLVLERRDVVGMARTGSGKTAAFVIPMIERL 146
>gi|119471856|ref|XP_001258230.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
gi|134034063|sp|A1DNG2.1|DBP10_NEOFI RecName: Full=ATP-dependent RNA helicase dbp10
gi|119406382|gb|EAW16333.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
Length = 934
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++ +DVV
Sbjct: 73 SANRKASNLKGRTVKKGGGFQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVG 132
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ G R LILSP+RELALQT K VKELG+ T L+S
Sbjct: 133 MARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKSV 192
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QFA + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 193 LLVGGDSLEEQFAMMAGNPDIVIATPGRFLHLKVEMNLDLSSIRY 237
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+S L+GGDS++ QFA + +PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 176 TLKVVKELGRGTDLKSVLLVGGDSLEEQFAMMAGNPDIVIATPGRFLHLKVEMNLDLSSI 235
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 236 RYVV--FDEADRLFEMGFAAQLTEILH 260
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP++++ +DVV MARTGSGKTA F+
Sbjct: 120 TIPVIMDDQDVVGMARTGSGKTAAFVI 146
>gi|240275043|gb|EER38558.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus H143]
Length = 941
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/165 (60%), Positives = 128/165 (77%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N N + K GGGFQ GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV
Sbjct: 69 AANRKASNLKGRTVKKGGGFQPLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVG 128
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+A G RALILSP+RELALQT K VKELG+ T L+S
Sbjct: 129 MARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSV 188
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 189 LLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSIRY 233
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+S L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 172 TLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSI 231
Query: 245 QLSLTD 250
+ + D
Sbjct: 232 RYVVFD 237
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKTA F+
Sbjct: 116 TIPLVLDDQDVVGMARTGSGKTAAFVI 142
>gi|239613976|gb|EEQ90963.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ER-3]
Length = 945
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 100/165 (60%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N N + K GGGFQS GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV
Sbjct: 69 AANRKASNLKGRTVKKGGGFQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVG 128
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK H+A G RALILSP+RELALQT K VKELG+ T L+S
Sbjct: 129 MARTGSGKTAAFVIPMIEKLKNHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSV 188
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 189 LLVGGDSLEEQFEYMAGNPDIIIATPGRFLHLKVEMSLDLSSIRY 233
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+S L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 172 TLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGNPDIIIATPGRFLHLKVEMSLDLSSI 231
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 232 RYVV--FDEADRLFEMGFAAQLTEILH 256
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 116 TIPLLLDDQDVVGMARTGSGKTAAFVI 142
>gi|327353326|gb|EGE82183.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ATCC
18188]
Length = 945
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 100/165 (60%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N N + K GGGFQS GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV
Sbjct: 69 AANRKASNLKGRTVKKGGGFQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVG 128
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK H+A G RALILSP+RELALQT K VKELG+ T L+S
Sbjct: 129 MARTGSGKTAAFVIPMIEKLKNHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSV 188
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 189 LLVGGDSLEEQFEYMAGNPDIIIATPGRFLHLKVEMSLDLSSIRY 233
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+S L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 172 TLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGNPDIIIATPGRFLHLKVEMSLDLSSI 231
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 232 RYVV--FDEADRLFEMGFAAQLTEILH 256
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 116 TIPLLLDDQDVVGMARTGSGKTAAFVI 142
>gi|452838537|gb|EME40477.1| hypothetical protein DOTSEDRAFT_90700 [Dothistroma septosporum
NZE10]
Length = 1010
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 130/160 (81%)
Query: 25 NGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTG 84
N + +K K G FQ+ GL +LK + ++G+ +PTPIQRKTIPL+L+G+DVV MARTG
Sbjct: 169 NRKSENKNAKKAGAFQTMGLNTHLLKAITRKGFSVPTPIQRKTIPLILDGQDVVGMARTG 228
Query: 85 SGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGG 144
SGKTA F+IPM+EKLK+H+A G RA++LSP+RELALQT K VKE+GK T L++T L+GG
Sbjct: 229 SGKTAAFVIPMIEKLKSHSAKVGARAIVLSPSRELALQTLKVVKEMGKGTDLRTTLLVGG 288
Query: 145 DSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DS+++QF+ + ++PDI++ATPGRF H+ VEM L+LSS++Y
Sbjct: 289 DSLEDQFSSMASNPDIIIATPGRFEHLKVEMGLELSSVKY 328
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+G+DVV MARTGSGKTA F+
Sbjct: 211 TIPLILDGQDVVGMARTGSGKTAAFVI 237
>gi|296422662|ref|XP_002840878.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637104|emb|CAZ85069.1| unnamed protein product [Tuber melanosporum]
Length = 838
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 97/154 (62%), Positives = 122/154 (79%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
K K GGGFQS GL +LK + ++G+ +PTPIQRKTIPLVL+G DVV MARTGSGKTA
Sbjct: 83 KSIKKGGGFQSMGLNMTLLKAITRKGFSVPTPIQRKTIPLVLDGVDVVGMARTGSGKTAA 142
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
F+IPM+E+LKTH+ G+RAL+LSP+RELALQT K VKE G+ T L+ L+GGDS++ Q
Sbjct: 143 FVIPMVERLKTHSVRVGMRALVLSPSRELALQTMKVVKEFGRGTDLKVVLLVGGDSLEEQ 202
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
F + +PDIV+ATPGRF+H+ VEMEL L S+QY
Sbjct: 203 FGYMAGNPDIVIATPGRFMHLKVEMELDLRSVQY 236
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKE G+ T L+ L+GGDS++ QF + +PDIV+ATPGRF+H+ VEMEL L S+
Sbjct: 175 TMKVVKEFGRGTDLKVVLLVGGDSLEEQFGYMAGNPDIVIATPGRFMHLKVEMELDLRSV 234
Query: 245 QLSLTD 250
Q + D
Sbjct: 235 QYVVFD 240
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPLVL+G DVV MARTGSGKTA F+ R
Sbjct: 119 TIPLVLDGVDVVGMARTGSGKTAAFVIPMVERL 151
>gi|358366421|dbj|GAA83042.1| dead box ATP-dependent rna helicase [Aspergillus kawachii IFO 4308]
Length = 934
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP+++E +DVV
Sbjct: 76 SANRKASNLKGRTVKKGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVG 135
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM++KLK+H+ G R LILSP+RELALQT K VKELGK T L+S
Sbjct: 136 MARTGSGKTAAFVIPMIQKLKSHSTQVGARGLILSPSRELALQTLKVVKELGKGTDLKSV 195
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 196 LLVGGDSLEEQFSMMAGNPDIVIATPGRFLHLKVEMHLDLSSIRY 240
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELGK T L+S L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 179 TLKVVKELGKGTDLKSVLLVGGDSLEEQFSMMAGNPDIVIATPGRFLHLKVEMHLDLSSI 238
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 239 RYVV--FDEADRLFEMGFAAQLTEILH 263
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP+++E +DVV MARTGSGKTA F+
Sbjct: 123 TIPVIMEDQDVVGMARTGSGKTAAFVI 149
>gi|425777534|gb|EKV15702.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium digitatum
Pd1]
gi|425779558|gb|EKV17605.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium digitatum
PHI26]
Length = 912
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 95/165 (57%), Positives = 129/165 (78%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++ +DVV
Sbjct: 67 SANRKGANLKGRTVKKGGGFQAMGLSMTLLKAITRKGFSVPTPIQRKTIPVIMDDKDVVG 126
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ + G RALI+SP+RELALQT K VKE+GK T L S
Sbjct: 127 MARTGSGKTASFVIPMIEKLKSHSTSFGARALIMSPSRELALQTLKVVKEMGKGTNLTSV 186
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS+++QF + +PDI++ATPGRFLH+ VEM++ LSSI+Y
Sbjct: 187 LLIGGDSLEDQFGMMANNPDIIIATPGRFLHLKVEMDMDLSSIKY 231
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP++++ +DVV MARTGSGKTA F+
Sbjct: 114 TIPVIMDDKDVVGMARTGSGKTASFVI 140
>gi|350629908|gb|EHA18281.1| hypothetical protein ASPNIDRAFT_38116 [Aspergillus niger ATCC 1015]
Length = 932
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP+V+E +DVV
Sbjct: 73 SANRKASNLKGRTVKKGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPVVMEDQDVVG 132
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM++KLK+H+ G R LILSP+RELALQT K VKELGK T L++
Sbjct: 133 MARTGSGKTAAFVIPMIQKLKSHSTQVGARGLILSPSRELALQTLKVVKELGKGTDLKAV 192
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 193 LLVGGDSLEEQFSMMAGNPDIVIATPGRFLHLKVEMNLDLSSIRY 237
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELGK T L++ L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 176 TLKVVKELGKGTDLKAVLLVGGDSLEEQFSMMAGNPDIVIATPGRFLHLKVEMNLDLSSI 235
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 236 RYVV--FDEADRLFEMGFAAQLTEILH 260
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP+V+E +DVV MARTGSGKTA F+
Sbjct: 120 TIPVVMEDQDVVGMARTGSGKTAAFVI 146
>gi|145240463|ref|XP_001392878.1| ATP-dependent RNA helicase DBP10 [Aspergillus niger CBS 513.88]
gi|134034062|sp|A2QRY2.1|DBP10_ASPNC RecName: Full=ATP-dependent RNA helicase dbp10
gi|134077396|emb|CAK40010.1| unnamed protein product [Aspergillus niger]
Length = 932
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP+++E +DVV
Sbjct: 73 SANRKASNLKGRTVKKGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVG 132
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM++KLK+H+ G R LILSP+RELALQT K VKELGK T L++
Sbjct: 133 MARTGSGKTAAFVIPMIQKLKSHSTQVGARGLILSPSRELALQTLKVVKELGKGTDLKAV 192
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 193 LLVGGDSLEEQFSMMAGNPDIVIATPGRFLHLKVEMNLDLSSIRY 237
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELGK T L++ L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 176 TLKVVKELGKGTDLKAVLLVGGDSLEEQFSMMAGNPDIVIATPGRFLHLKVEMNLDLSSI 235
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 236 RYVV--FDEADRLFEMGFAAQLTEILH 260
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP+++E +DVV MARTGSGKTA F+
Sbjct: 120 TIPVIMEDQDVVGMARTGSGKTAAFVI 146
>gi|70992295|ref|XP_750996.1| ATP dependent RNA helicase (Dbp10) [Aspergillus fumigatus Af293]
gi|74697392|sp|Q8NJM2.1|DBP10_ASPFU RecName: Full=ATP-dependent RNA helicase dbp10
gi|21627815|emb|CAD37147.1| putative ATP-dependent RNA helicase [Aspergillus fumigatus]
gi|66848629|gb|EAL88958.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
Af293]
gi|159124566|gb|EDP49684.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
A1163]
Length = 869
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/165 (58%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++ +DVV
Sbjct: 53 SANRKASNLKGRTVKKGGGFQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVG 112
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ G R L+LSP+RELALQT K VKELG+ T L+S
Sbjct: 113 MARTGSGKTAAFVIPMIEKLKSHSTKVGARGLVLSPSRELALQTLKVVKELGRGTDLKSV 172
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QFA + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 173 LLVGGDSLEEQFAMIAGNPDIIIATPGRFLHLKVEMNLDLSSIRY 217
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+S L+GGDS++ QFA + +PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 156 TLKVVKELGRGTDLKSVLLVGGDSLEEQFAMIAGNPDIIIATPGRFLHLKVEMNLDLSSI 215
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 216 RYVV--FDEADRLFEMGFAAQLTEILH 240
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP++++ +DVV MARTGSGKTA F+
Sbjct: 100 TIPVIMDDQDVVGMARTGSGKTAAFVI 126
>gi|242803555|ref|XP_002484198.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces
stipitatus ATCC 10500]
gi|218717543|gb|EED16964.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces
stipitatus ATCC 10500]
Length = 945
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 124/151 (82%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL ++LK + ++G+ +PTPIQRKTIP++L+ +DVV MARTGSGKTA F+I
Sbjct: 93 KKGGGFQAMGLNAQLLKAIARKGFSVPTPIQRKTIPVILDDQDVVGMARTGSGKTAAFVI 152
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKLK+H+ GVR LILSP+RELALQT K VKELG+ T L++ L+GGDS++ QF+
Sbjct: 153 PMIEKLKSHSGKVGVRGLILSPSRELALQTLKVVKELGRGTDLKAVLLVGGDSLEEQFSL 212
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 213 MVGNPDIVIATPGRFLHLKVEMNLDLSSIKY 243
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L++ L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 182 TLKVVKELGRGTDLKAVLLVGGDSLEEQFSLMVGNPDIVIATPGRFLHLKVEMNLDLSSI 241
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 242 KYVV--FDEADRLFEMGFAAQLTEILH 266
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP++L+ +DVV MARTGSGKTA F+
Sbjct: 126 TIPVILDDQDVVGMARTGSGKTAAFVI 152
>gi|189189808|ref|XP_001931243.1| ATP-dependent RNA helicase DBP10 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972849|gb|EDU40348.1| ATP-dependent RNA helicase DBP10 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 892
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 128/165 (77%), Gaps = 1/165 (0%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
+SN N G K K GGGFQ+ GL +LK + ++G+KIPTPIQRK +PL+L+G DVV
Sbjct: 61 ASNRKASNVG-KSVKKGGGFQAMGLNAALLKAIAQKGFKIPTPIQRKAVPLMLQGEDVVG 119
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM++KLK H+A G R +I+SP+RELALQT K VKELG+ T L++
Sbjct: 120 MARTGSGKTAAFVIPMIQKLKAHSAKVGARGIIMSPSRELALQTLKVVKELGRGTDLRTI 179
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDI++ATPGRFLH+ VEM L LSS++Y
Sbjct: 180 LLVGGDSLEEQFSSMTTNPDIIIATPGRFLHLKVEMGLDLSSVRY 224
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
+PL+L+G DVV MARTGSGKTA F+
Sbjct: 107 AVPLMLQGEDVVGMARTGSGKTAAFVI 133
>gi|330947853|ref|XP_003306985.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
gi|311315219|gb|EFQ84923.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
Length = 893
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 128/165 (77%), Gaps = 1/165 (0%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
+SN N G K K GGGFQ+ GL +LK + ++G+KIPTPIQRK +PL+L+G DVV
Sbjct: 61 ASNRKASNIG-KSVKKGGGFQAMGLNAALLKAIAQKGFKIPTPIQRKAVPLMLQGEDVVG 119
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM++KLK H+A G R +I+SP+RELALQT K VKELG+ T L++
Sbjct: 120 MARTGSGKTAAFVIPMIQKLKAHSAKVGARGIIMSPSRELALQTLKVVKELGRGTDLRTI 179
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDI++ATPGRFLH+ VEM L LSS++Y
Sbjct: 180 LLVGGDSLEEQFSSMTTNPDIIIATPGRFLHLKVEMGLDLSSVRY 224
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
+PL+L+G DVV MARTGSGKTA F+
Sbjct: 107 AVPLMLQGEDVVGMARTGSGKTAAFVI 133
>gi|71999644|ref|NP_741348.2| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
gi|351051383|emb|CCD74205.1| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
Length = 825
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/155 (60%), Positives = 126/155 (81%), Gaps = 1/155 (0%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++K K GG+Q GL V K + K+G+ PTPIQRKTIP +++G+DVVAM+RTGSGKTA
Sbjct: 17 NRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTA 76
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
F+IPML+KLK T+G+RAL++SPTRELALQTFK VKELG+FT L+ CL+GGD ++
Sbjct: 77 AFVIPMLQKLKRRD-TTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEE 135
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QF+ +H +PDI++ATPGR LH++VEM+L+LS +QY
Sbjct: 136 QFSTIHENPDILLATPGRLLHVIVEMDLRLSYVQY 170
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 53/66 (80%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
TFK VKELG+FT L+ CL+GGD ++ QF+ +H +PDI++ATPGR LH++VEM+L+LS +
Sbjct: 109 TFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLLHVIVEMDLRLSYV 168
Query: 245 QLSLTD 250
Q + D
Sbjct: 169 QYVVFD 174
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIP +++G+DVVAM+RTGSGKTA F+ + R
Sbjct: 54 TIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKR 88
>gi|451999037|gb|EMD91500.1| hypothetical protein COCHEDRAFT_1136109 [Cochliobolus
heterostrophus C5]
Length = 891
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/165 (58%), Positives = 128/165 (77%), Gaps = 1/165 (0%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
+SN N G K K GGGFQ+ GL +LK + ++G+K+PTPIQRK +PL+L+G DVV
Sbjct: 61 ASNRKASNVG-KSVKKGGGFQAMGLNAALLKAITQKGFKVPTPIQRKAVPLMLQGEDVVG 119
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM++KLK H+A G R +I+SP+RELALQT K VKELG+ T L++
Sbjct: 120 MARTGSGKTAAFVIPMIQKLKAHSAKVGARGIIMSPSRELALQTLKVVKELGRGTDLRTI 179
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDI++ATPGRFLH+ VEM L LSS++Y
Sbjct: 180 LLVGGDSLEEQFSSMTTNPDIIIATPGRFLHLKVEMGLDLSSVKY 224
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
+PL+L+G DVV MARTGSGKTA F+
Sbjct: 107 AVPLMLQGEDVVGMARTGSGKTAAFVI 133
>gi|71999646|ref|NP_741347.2| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
gi|351051384|emb|CCD74206.1| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
Length = 871
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/155 (60%), Positives = 126/155 (81%), Gaps = 1/155 (0%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++K K GG+Q GL V K + K+G+ PTPIQRKTIP +++G+DVVAM+RTGSGKTA
Sbjct: 17 NRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTA 76
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
F+IPML+KLK T+G+RAL++SPTRELALQTFK VKELG+FT L+ CL+GGD ++
Sbjct: 77 AFVIPMLQKLKRRD-TTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEE 135
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QF+ +H +PDI++ATPGR LH++VEM+L+LS +QY
Sbjct: 136 QFSTIHENPDILLATPGRLLHVIVEMDLRLSYVQY 170
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 53/66 (80%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
TFK VKELG+FT L+ CL+GGD ++ QF+ +H +PDI++ATPGR LH++VEM+L+LS +
Sbjct: 109 TFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLLHVIVEMDLRLSYV 168
Query: 245 QLSLTD 250
Q + D
Sbjct: 169 QYVVFD 174
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
TIP +++G+DVVAM+RTGSGKTA F+ + R
Sbjct: 54 TIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKR 88
>gi|340521482|gb|EGR51716.1| predicted protein [Trichoderma reesei QM6a]
Length = 914
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/151 (64%), Positives = 123/151 (81%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPLVLE +DVV MARTGSGKTA F+I
Sbjct: 84 KKGGGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPLVLERKDVVGMARTGSGKTAAFVI 143
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+E+L+ H++ G RALILSP+RELA+QT K VKELG+ T L+S L+GGDS++ QF
Sbjct: 144 PMIERLRAHSSKFGSRALILSPSRELAIQTLKVVKELGRGTDLKSVLLVGGDSLEEQFGF 203
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 204 MSANPDIVIATPGRFLHLKVEMGLDLSSIKY 234
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPLVLE +DVV MARTGSGKTA F+ R
Sbjct: 117 TIPLVLERKDVVGMARTGSGKTAAFVIPMIERL 149
>gi|358384615|gb|EHK22212.1| hypothetical protein TRIVIDRAFT_209061 [Trichoderma virens Gv29-8]
Length = 897
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/151 (64%), Positives = 123/151 (81%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ G+ +LK + ++G+ +PTPIQRKTIPLVLE +DVV MARTGSGKTA F+I
Sbjct: 84 KKGGGFQAMGINANLLKAIARKGFSVPTPIQRKTIPLVLERKDVVGMARTGSGKTAAFVI 143
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKL+ H++ G RALILSP+RELA+QT K VKELG+ T L+S L+GGDS++ QF
Sbjct: 144 PMIEKLRAHSSKFGSRALILSPSRELAIQTLKVVKELGRGTDLKSVLLVGGDSLEEQFGF 203
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 204 MSANPDIVIATPGRFLHLKVEMGLDLSSIKY 234
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVLE +DVV MARTGSGKTA F+
Sbjct: 117 TIPLVLERKDVVGMARTGSGKTAAFVI 143
>gi|225680138|gb|EEH18422.1| ATP-dependent RNA helicase dbp10 [Paracoccidioides brasiliensis
Pb03]
Length = 934
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/151 (63%), Positives = 122/151 (80%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQS GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV MARTGSGKTA F+I
Sbjct: 79 KKGGGFQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVI 138
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKLK+H+A G RALI+SP+RELALQT K VKELG+ T L+ L+GGDS++ QF
Sbjct: 139 PMIEKLKSHSAKFGARALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEY 198
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 199 MSGNPDIIIATPGRFLHLKVEMSLDLSSIRY 229
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 112 TIPLLLDDQDVVGMARTGSGKTAAFVI 138
>gi|154299696|ref|XP_001550266.1| hypothetical protein BC1G_11474 [Botryotinia fuckeliana B05.10]
Length = 307
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 126/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV
Sbjct: 71 AANRKNSNLKGQSVKKGGGFQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVG 130
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKL+ H+A G RALI+SP+RELALQT K VKE G+ T L+
Sbjct: 131 MARTGSGKTAAFVIPMIEKLRAHSARVGARALIMSPSRELALQTLKVVKEFGRGTDLKCV 190
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDIV+ATPGRFLH+ VEM L LSS++Y
Sbjct: 191 LLVGGDSLEEQFGFMAGNPDIVIATPGRFLHLKVEMSLDLSSMKY 235
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKTA F+
Sbjct: 118 TIPLVLDNQDVVGMARTGSGKTAAFVI 144
>gi|261193383|ref|XP_002623097.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
SLH14081]
gi|239588702|gb|EEQ71345.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
SLH14081]
Length = 945
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 126/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N N + K GGGFQS GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV
Sbjct: 69 AANRKASNLKGRTVKKGGGFQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVG 128
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK H+A G RALIL P+RELALQT K VKELG+ T L+S
Sbjct: 129 MARTGSGKTAAFVIPMIEKLKNHSAKFGSRALILLPSRELALQTLKVVKELGRGTDLKSV 188
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 189 LLVGGDSLEEQFEYMAGNPDIIIATPGRFLHLKVEMSLDLSSIRY 233
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 167 RFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVAT 226
R L ++ EL L T K VKELG+ T L+S L+GGDS++ QF + +PDI++AT
Sbjct: 158 RALILLPSRELALQ----TLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGNPDIIIAT 213
Query: 227 PGRFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLVGDSTEMIH 271
PGRFLH+ VEM L LSSI+ + F + + TE++H
Sbjct: 214 PGRFLHLKVEMSLDLSSIRYVV--FDEADRLFEMGFAAQLTEILH 256
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 116 TIPLLLDDQDVVGMARTGSGKTAAFVI 142
>gi|295667653|ref|XP_002794376.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226286482|gb|EEH42048.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 905
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/151 (63%), Positives = 122/151 (80%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQS GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV MARTGSGKTA F+I
Sbjct: 79 KKGGGFQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVI 138
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKLK+H+A G RALI+SP+RELALQT K VKELG+ T L+ L+GGDS++ QF
Sbjct: 139 PMIEKLKSHSAKFGARALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEY 198
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 199 MSGNPDIIIATPGRFLHLKVEMSLDLSSIRY 229
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 112 TIPLLLDDQDVVGMARTGSGKTAAFVI 138
>gi|226291932|gb|EEH47360.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides brasiliensis
Pb18]
Length = 895
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/151 (63%), Positives = 122/151 (80%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQS GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV MARTGSGKTA F+I
Sbjct: 79 KKGGGFQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVI 138
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKLK+H+A G RALI+SP+RELALQT K VKELG+ T L+ L+GGDS++ QF
Sbjct: 139 PMIEKLKSHSAKFGARALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEY 198
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 199 MSGNPDIIIATPGRFLHLKVEMSLDLSSIRY 229
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 112 TIPLLLDDQDVVGMARTGSGKTAAFVI 138
>gi|451848327|gb|EMD61633.1| hypothetical protein COCSADRAFT_148565 [Cochliobolus sativus
ND90Pr]
Length = 891
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/165 (57%), Positives = 128/165 (77%), Gaps = 1/165 (0%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
+SN N G K K GGGFQ+ GL +LK + ++G+K+PTPIQRK +PL+L+G DVV
Sbjct: 61 ASNRKASNVG-KSVKKGGGFQAMGLNAALLKAITQKGFKVPTPIQRKAVPLMLQGEDVVG 119
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM++KLK H+A G R +I+SP+RELALQT + VKELG+ T L++
Sbjct: 120 MARTGSGKTAAFVIPMIQKLKAHSAKVGARGIIMSPSRELALQTLRVVKELGRGTDLRTI 179
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDI++ATPGRFLH+ VEM L LSS++Y
Sbjct: 180 LLVGGDSLEEQFSSMTTNPDIIIATPGRFLHLKVEMGLDLSSVKY 224
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
+PL+L+G DVV MARTGSGKTA F+
Sbjct: 107 AVPLMLQGEDVVGMARTGSGKTAAFVI 133
>gi|336470872|gb|EGO59033.1| hypothetical protein NEUTE1DRAFT_60019 [Neurospora tetrasperma FGSC
2508]
gi|350291940|gb|EGZ73135.1| ATP-dependent RNA helicase dbp-10 [Neurospora tetrasperma FGSC
2509]
Length = 934
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/169 (56%), Positives = 129/169 (76%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
++T SS + N K K GGGFQ+ GL +L+ + ++G+ +PTPIQRK IPL+LE +
Sbjct: 78 SLTRSSQRKSSNIQGKSVKKGGGFQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERK 137
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
DVV MARTGSGKTA F+IPM+E+LK H+ G RALI+SP+RELALQT K VKELG+ T
Sbjct: 138 DVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELGRGTD 197
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L++ L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L L+SI+Y
Sbjct: 198 LKTVLLVGGDSLEEQFGMMASNPDIIIATPGRFLHLKVEMNLSLASIKY 246
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L++ L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L L+SI
Sbjct: 185 TLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMASNPDIIIATPGRFLHLKVEMNLSLASI 244
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + + TE++H
Sbjct: 245 KYVV--FDEADRLFEMGFATELTEILH 269
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IPL+LE +DVV MARTGSGKTA F+ R
Sbjct: 129 AIPLILERKDVVGMARTGSGKTAAFVIPMIERL 161
>gi|258573243|ref|XP_002540803.1| predicted protein [Uncinocarpus reesii 1704]
gi|237901069|gb|EEP75470.1| predicted protein [Uncinocarpus reesii 1704]
Length = 937
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 126/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV
Sbjct: 73 SMNRKASNLKGRTVKKGGGFQAMGLNATLLKSITRKGFSVPTPIQRKTIPLVLDEQDVVG 132
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H++ G RALI+SP+RELALQT K VKELG+ T L+
Sbjct: 133 MARTGSGKTAAFVIPMIEKLKSHSSKIGSRALIMSPSRELALQTLKVVKELGRGTDLKCV 192
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 193 LLVGGDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMNLDLSSIKY 237
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKTA F+
Sbjct: 120 TIPLVLDEQDVVGMARTGSGKTAAFVI 146
>gi|85107031|ref|XP_962298.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
gi|74696531|sp|Q7S9J4.1|DBP10_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-10
gi|28923900|gb|EAA33062.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
Length = 934
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/169 (56%), Positives = 129/169 (76%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
++T SS + N K K GGGFQ+ GL +L+ + ++G+ +PTPIQRK IPL+LE +
Sbjct: 78 SLTRSSQRKSSNIQGKSVKKGGGFQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERK 137
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
DVV MARTGSGKTA F+IPM+E+LK H+ G RALI+SP+RELALQT K VKELG+ T
Sbjct: 138 DVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELGRGTD 197
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L++ L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L L+SI+Y
Sbjct: 198 LKTVLLVGGDSLEEQFGMMASNPDIIIATPGRFLHLKVEMNLSLASIKY 246
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L++ L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L L+SI
Sbjct: 185 TLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMASNPDIIIATPGRFLHLKVEMNLSLASI 244
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + + TE++H
Sbjct: 245 KYVV--FDEADRLFEMGFATELTEILH 269
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IPL+LE +DVV MARTGSGKTA F+ R
Sbjct: 129 AIPLILERKDVVGMARTGSGKTAAFVIPMIERL 161
>gi|452978780|gb|EME78543.1| hypothetical protein MYCFIDRAFT_10719, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 855
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/163 (57%), Positives = 130/163 (79%), Gaps = 3/163 (1%)
Query: 22 NDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMA 81
N N +T KK G F+S GL +LK + ++G+ +PTPIQRKTIPL+++G+DVV MA
Sbjct: 17 NRKNDSTAAKK---AGAFKSMGLNAHLLKAITRKGFTVPTPIQRKTIPLIMDGQDVVGMA 73
Query: 82 RTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCL 141
RTGSGKTA F+IPM+EKLK+H+A G RA++LSP+RELALQT K VKE+G+ T L++T L
Sbjct: 74 RTGSGKTAAFVIPMIEKLKSHSAKVGARAVVLSPSRELALQTLKVVKEMGRGTDLRTTLL 133
Query: 142 LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+GGDS+++QF + ++PDI++ATPGRF H+ VEM L+LSS++Y
Sbjct: 134 VGGDSLEDQFGSMASNPDIIIATPGRFEHLKVEMGLELSSVKY 176
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+++G+DVV MARTGSGKTA F+
Sbjct: 59 TIPLIMDGQDVVGMARTGSGKTAAFVI 85
>gi|336263707|ref|XP_003346633.1| hypothetical protein SMAC_04806 [Sordaria macrospora k-hell]
gi|380090528|emb|CCC11825.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 934
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 128/169 (75%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
++T + + N K K GGGFQ+ GL +L+ + ++G+ +PTPIQRK IPL+LE +
Sbjct: 79 SLTRGAQRKSSNIQGKSVKKGGGFQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERK 138
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
DVV MARTGSGKTA F+IPM+E+LK H+ G RALI+SP+RELALQT K VKELG+ T
Sbjct: 139 DVVGMARTGSGKTAAFVIPMIERLKGHSPRVGARALIMSPSRELALQTLKVVKELGRGTD 198
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L++ L+GGDS++ QF + A+PDI++ATPGRFLH+ VEM L LSS++Y
Sbjct: 199 LKTVLLVGGDSLEEQFGMMAANPDIIIATPGRFLHLKVEMSLSLSSVKY 247
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L++ L+GGDS++ QF + A+PDI++ATPGRFLH+ VEM L LSS+
Sbjct: 186 TLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMAANPDIIIATPGRFLHLKVEMSLSLSSV 245
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + + TE++H
Sbjct: 246 KYVV--FDEADRLFEMGFATELTEILH 270
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IPL+LE +DVV MARTGSGKTA F+ R
Sbjct: 130 AIPLILERKDVVGMARTGSGKTAAFVIPMIERL 162
>gi|320036334|gb|EFW18273.1| ATP-dependent RNA helicase DBP10 [Coccidioides posadasii str.
Silveira]
Length = 927
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 124/165 (75%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV
Sbjct: 64 SMNRKASNLKGRTVKKGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVG 123
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ G R LILSP+RELALQT K VKELG+ T L+
Sbjct: 124 MARTGSGKTAAFVIPMIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELGRGTDLKCV 183
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 184 LLVGGDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMNLDLSSIKY 228
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKTA F+
Sbjct: 111 TIPLVLDDQDVVGMARTGSGKTAAFVI 137
>gi|119191696|ref|XP_001246454.1| hypothetical protein CIMG_00225 [Coccidioides immitis RS]
gi|118575169|sp|Q1EB38.1|DBP10_COCIM RecName: Full=ATP-dependent RNA helicase DBP10
gi|392864317|gb|EAS34854.2| ATP-dependent RNA helicase DBP10 [Coccidioides immitis RS]
Length = 927
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 124/165 (75%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV
Sbjct: 64 SMNRKASNLKGRTVKKGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVG 123
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ G R LILSP+RELALQT K VKELG+ T L+
Sbjct: 124 MARTGSGKTAAFVIPMIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELGRGTDLKCV 183
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 184 LLVGGDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMNLDLSSIKY 228
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKTA F+
Sbjct: 111 TIPLVLDDQDVVGMARTGSGKTAAFVI 137
>gi|346977175|gb|EGY20627.1| ATP-dependent RNA helicase DBP10 [Verticillium dahliae VdLs.17]
Length = 899
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 126/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N N K K GGGFQ GL +L+ + K+G+ PTPIQRKTIPL+++ +DVV
Sbjct: 70 AANRKTTNLTGKVNKKGGGFQVMGLNSNLLRAITKKGFVQPTPIQRKTIPLIMDRKDVVG 129
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+E+LKTH+A G RALI+SP+RELA+QT + VK+ K T L++
Sbjct: 130 MARTGSGKTAAFVIPMIERLKTHSAKFGARALIMSPSRELAIQTLRVVKDFNKGTDLKAA 189
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++GGDSMD QF+ L A+PDI++ATPGRFLH+ VEM L LSSIQY
Sbjct: 190 LVVGGDSMDEQFSLLSANPDIIIATPGRFLHLKVEMSLNLSSIQY 234
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 284 KKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
KK +VQ T TIPL+++ +DVV MARTGSGKTA F+ R
Sbjct: 104 KKGFVQPTPIQRKTIPLIMDRKDVVGMARTGSGKTAAFVIPMIERL 149
>gi|212539832|ref|XP_002150071.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces marneffei
ATCC 18224]
gi|210067370|gb|EEA21462.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces marneffei
ATCC 18224]
Length = 948
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 123/151 (81%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL ++LK + ++G+ +PTPIQRKTIP++++ +DVV MARTGSGKTA F+I
Sbjct: 93 KKGGGFQAMGLNAQLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVI 152
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKLK+H+ GVR LI+SP+RELALQT K VKELG+ T L++ L+GGDS++ QF
Sbjct: 153 PMIEKLKSHSGKVGVRGLIMSPSRELALQTLKVVKELGRGTDLKAVLLVGGDSLEEQFGL 212
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 213 MVGNPDIVIATPGRFLHLKVEMNLDLSSIKY 243
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L++ L+GGDS++ QF + +PDIV+ATPGRFLH+ VEM L LSSI
Sbjct: 182 TLKVVKELGRGTDLKAVLLVGGDSLEEQFGLMVGNPDIVIATPGRFLHLKVEMNLDLSSI 241
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 242 KYVV--FDEADRLFEMGFAAQLTEILH 266
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP++++ +DVV MARTGSGKTA F+
Sbjct: 126 TIPVIMDDQDVVGMARTGSGKTAAFVI 152
>gi|303313411|ref|XP_003066717.1| ATP-dependent RNA helicase DBP10, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106379|gb|EER24572.1| ATP-dependent RNA helicase DBP10, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 936
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 124/165 (75%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV
Sbjct: 73 SMNRKASNLKGRTVKKGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVG 132
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ G R LILSP+RELALQT K VKELG+ T L+
Sbjct: 133 MARTGSGKTAAFVIPMIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELGRGTDLKCV 192
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 193 LLVGGDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMNLDLSSIKY 237
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKTA F+
Sbjct: 120 TIPLVLDDQDVVGMARTGSGKTAAFVI 146
>gi|302895429|ref|XP_003046595.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256727522|gb|EEU40882.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 897
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 94/151 (62%), Positives = 122/151 (80%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRK+IPL+L+ +D+V MARTGSGKTA F+I
Sbjct: 82 KKGGGFQAMGLNSNLLKAITRKGFSVPTPIQRKSIPLILDRKDLVGMARTGSGKTAAFVI 141
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+E+L+ H+A G RALILSP+RELA+QT K VKE G+ T L+S L+GGDS++ QF
Sbjct: 142 PMIERLRAHSARFGTRALILSPSRELAIQTLKVVKEFGRGTDLKSVLLVGGDSLEEQFGY 201
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM L LSSIQY
Sbjct: 202 MAANPDIVIATPGRFLHLKVEMSLDLSSIQY 232
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+IPL+L+ +D+V MARTGSGKTA F+ R
Sbjct: 115 SIPLILDRKDLVGMARTGSGKTAAFVIPMIERL 147
>gi|260942725|ref|XP_002615661.1| hypothetical protein CLUG_04543 [Clavispora lusitaniae ATCC 42720]
gi|238850951|gb|EEQ40415.1| hypothetical protein CLUG_04543 [Clavispora lusitaniae ATCC 42720]
Length = 955
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 124/158 (78%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N KK G F SFGL +L + K+GY+ PTPIQRKTIPL++E RDVV MARTGSG
Sbjct: 108 NNPTAKKAKAGTFASFGLSKFILSNIAKKGYRQPTPIQRKTIPLIMENRDVVGMARTGSG 167
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++P++EKLK+H+A G R++ILSP+RELALQTFK VKE K T L+S L+GGDS
Sbjct: 168 KTAAFVLPVIEKLKSHSAKVGARSVILSPSRELALQTFKQVKEFSKGTDLRSVVLIGGDS 227
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++ QF+ + ++PDI+VATPGRFLH+ VEM+L LS+++Y
Sbjct: 228 LEEQFSSMMSNPDIIVATPGRFLHLQVEMQLDLSTVEY 265
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLF 320
AKK Y Q T TIPL++E RDVV MARTGSGKTA F+
Sbjct: 134 AKKGYRQPTPIQRKTIPLIMENRDVVGMARTGSGKTAAFVL 174
>gi|302406797|ref|XP_003001234.1| ATP-dependent RNA helicase DBP10 [Verticillium albo-atrum VaMs.102]
gi|261359741|gb|EEY22169.1| ATP-dependent RNA helicase DBP10 [Verticillium albo-atrum VaMs.102]
Length = 902
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 126/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N N K K GGGFQ GL +L+ + K+G+ PTPIQRKTIPL+++ +DVV
Sbjct: 70 AANRKTTNLTGKVNKKGGGFQVMGLNSNLLRAITKKGFVQPTPIQRKTIPLIMDRKDVVG 129
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+E+LKTH+A G RALI+SP+RELA+QT + VK+ K T L++
Sbjct: 130 MARTGSGKTAAFVIPMIERLKTHSAKFGARALIMSPSRELAIQTLRVVKDFNKGTDLKAA 189
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++GGDSMD QF+ L A+PDI++ATPGRFLH+ VEM L LSSIQY
Sbjct: 190 LVVGGDSMDEQFSLLSANPDIIIATPGRFLHLKVEMSLNLSSIQY 234
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 284 KKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
KK +VQ T TIPL+++ +DVV MARTGSGKTA F+ R
Sbjct: 104 KKGFVQPTPIQRKTIPLIMDRKDVVGMARTGSGKTAAFVIPMIERL 149
>gi|320593114|gb|EFX05523.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 956
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 97/164 (59%), Positives = 128/164 (78%), Gaps = 4/164 (2%)
Query: 21 SNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAM 80
S++ GNT K GGGFQ+ GL +L+ + ++G+ +PTPIQRKTIPL++ RDVV M
Sbjct: 97 SSNLKGNT----VKKGGGFQALGLNANLLRAITRKGFSVPTPIQRKTIPLIMGRRDVVGM 152
Query: 81 ARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTC 140
ARTGSGKTA F+IPM+E+L+ H+A G RAL+LSP+RELALQT K VKELGK T L++
Sbjct: 153 ARTGSGKTAAFVIPMIERLRAHSARVGARALVLSPSRELALQTLKVVKELGKGTDLKTIL 212
Query: 141 LLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + ++PDIV+ATPGRFLH+ VEM L LSS++Y
Sbjct: 213 LVGGDSLEEQFGLVASNPDIVIATPGRFLHLKVEMSLDLSSVRY 256
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELGK T L++ L+GGDS++ QF + ++PDIV+ATPGRFLH+ VEM L LSS+
Sbjct: 195 TLKVVKELGKGTDLKTILLVGGDSLEEQFGLVASNPDIVIATPGRFLHLKVEMSLDLSSV 254
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 255 RYVV--FDEADRLFEMGFAAQLTEILH 279
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPL++ RDVV MARTGSGKTA F+ R
Sbjct: 139 TIPLIMGRRDVVGMARTGSGKTAAFVIPMIERL 171
>gi|341892664|gb|EGT48599.1| hypothetical protein CAEBREN_09605 [Caenorhabditis brenneri]
Length = 813
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 126/157 (80%), Gaps = 1/157 (0%)
Query: 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGK 87
+ ++K K GG+Q GL + K + K+G+ PTPIQRKTIP +++G+DVVAM+RTGSGK
Sbjct: 15 SQNRKHKKAGGWQQLGLDHTIFKAIEKKGFSQPTPIQRKTIPCIMDGKDVVAMSRTGSGK 74
Query: 88 TACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
TA F+IPML+KLK T G+RAL++SPTRELALQTFK VKELG+FT L+ CL+GGD +
Sbjct: 75 TAAFVIPMLQKLKGRD-TKGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDVL 133
Query: 148 DNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ QF+ +H +PDI++ATPGR LH++VEM+L+LS +QY
Sbjct: 134 EEQFSTIHENPDILLATPGRLLHVIVEMDLRLSFVQY 170
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 53/66 (80%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
TFK VKELG+FT L+ CL+GGD ++ QF+ +H +PDI++ATPGR LH++VEM+L+LS +
Sbjct: 109 TFKVVKELGRFTGLRCACLVGGDVLEEQFSTIHENPDILLATPGRLLHVIVEMDLRLSFV 168
Query: 245 QLSLTD 250
Q + D
Sbjct: 169 QYVVFD 174
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP +++G+DVVAM+RTGSGKTA F+
Sbjct: 54 TIPCIMDGKDVVAMSRTGSGKTAAFVI 80
>gi|324503749|gb|ADY41623.1| ATP-dependent RNA helicase DDX54 [Ascaris suum]
Length = 799
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 125/155 (80%), Gaps = 1/155 (0%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++K++ GG+Q+ GL V K + K+GY+ PTPIQRK IPL+++G+DVVAM+RTGSGKTA
Sbjct: 31 NRKQRKAGGWQALGLDHAVFKAIEKKGYRQPTPIQRKAIPLIIDGKDVVAMSRTGSGKTA 90
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
F++PML+KLK +G RAL+++PTRELALQTFKF KELG+FT L+ L+GGDS++
Sbjct: 91 AFVVPMLQKLKRRE-VNGTRALLIAPTRELALQTFKFTKELGRFTGLRCAALVGGDSIEE 149
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QF +H PDI++ATPGR LH+++EM L+L+++QY
Sbjct: 150 QFGAIHEKPDIIIATPGRLLHLIIEMNLRLTTVQY 184
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 4/84 (4%)
Query: 167 RFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVAT 226
R L I EL L TFKF KELG+FT L+ L+GGDS++ QF +H PDI++AT
Sbjct: 109 RALLIAPTRELALQ----TFKFTKELGRFTGLRCAALVGGDSIEEQFGAIHEKPDIIIAT 164
Query: 227 PGRFLHIVVEMELKLSSIQLSLTD 250
PGR LH+++EM L+L+++Q + D
Sbjct: 165 PGRLLHLIIEMNLRLTTVQYLVFD 188
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 284 KKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFN 332
KK Y Q T IPL+++G+DVVAM+RTGSGKTA F+ + R N
Sbjct: 55 KKGYRQPTPIQRKAIPLIIDGKDVVAMSRTGSGKTAAFVVPMLQKLKRREVN 106
>gi|396463068|ref|XP_003836145.1| similar to ATP-dependent RNA helicase dbp10 [Leptosphaeria maculans
JN3]
gi|312212697|emb|CBX92780.1| similar to ATP-dependent RNA helicase dbp10 [Leptosphaeria maculans
JN3]
Length = 894
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 128/165 (77%), Gaps = 1/165 (0%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
+SN N G K K GGGFQ+ GL +LK + ++G+KIPTPIQRK +PL+L+G DVV
Sbjct: 62 ASNRKASNLG-KSIKKGGGFQAMGLNALLLKAIAQKGFKIPTPIQRKAVPLMLQGDDVVG 120
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM++KLK H+A G R +I+SP+RELALQT K VKELG+ T L++
Sbjct: 121 MARTGSGKTAAFVIPMIQKLKAHSAKVGARGIIMSPSRELALQTLKVVKELGRGTDLRTI 180
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDI++ATPGRFLH+ VEM L LSS++Y
Sbjct: 181 LLVGGDSLEEQFSSMTTNPDIIIATPGRFLHLKVEMGLDLSSVKY 225
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
+PL+L+G DVV MARTGSGKTA F+
Sbjct: 108 AVPLMLQGDDVVGMARTGSGKTAAFVI 134
>gi|268553635|ref|XP_002634804.1| Hypothetical protein CBG13909 [Caenorhabditis briggsae]
Length = 845
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/157 (58%), Positives = 126/157 (80%), Gaps = 1/157 (0%)
Query: 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGK 87
+ ++K K GG+Q GL + K + K+G+ PTPIQRKTIP +++G+DVVAM+RTGSGK
Sbjct: 15 SQNRKHKKAGGWQQLGLDHTIFKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGK 74
Query: 88 TACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
TA F+IPML+KLK T G+RAL++SPTRELALQTFK VKELG+FT L+ CL+GGD +
Sbjct: 75 TAAFVIPMLQKLKGRD-TKGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDVL 133
Query: 148 DNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++QF+ +H +PDI++ATPGR LH++VEM+L+L +QY
Sbjct: 134 EDQFSTIHENPDILLATPGRLLHVIVEMDLRLQFVQY 170
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 53/66 (80%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
TFK VKELG+FT L+ CL+GGD +++QF+ +H +PDI++ATPGR LH++VEM+L+L +
Sbjct: 109 TFKVVKELGRFTGLRCACLVGGDVLEDQFSTIHENPDILLATPGRLLHVIVEMDLRLQFV 168
Query: 245 QLSLTD 250
Q + D
Sbjct: 169 QYVVFD 174
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP +++G+DVVAM+RTGSGKTA F+
Sbjct: 54 TIPCIMDGKDVVAMSRTGSGKTAAFVI 80
>gi|449511783|ref|XP_004164052.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Cucumis sativus]
Length = 789
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 130/176 (73%), Gaps = 2/176 (1%)
Query: 11 GFEDPTVTISSNDD-NGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIP 69
G +D + +SS + +KK GGF+S GL V +G+ ++GY++PTPIQRKT+P
Sbjct: 2 GKQDEPLHVSSKAELKRREKQQKKAKSGGFESLGLSANVFRGIKRKGYRVPTPIQRKTMP 61
Query: 70 LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129
L+L G DVVAMARTGSGKTA FL+PMLE+LK H GVRALILSPTR+LALQT KF KE
Sbjct: 62 LILSGADVVAMARTGSGKTAAFLVPMLERLKQHEPQGGVRALILSPTRDLALQTLKFTKE 121
Query: 130 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
LGKFT L+ + L+GGDSM+ QF L SPD+++ATPGR +H + E+ ++ L +++Y
Sbjct: 122 LGKFTDLRISLLVGGDSMETQFEELAQSPDVIIATPGRLMHHLAEVDDMTLRTVEY 177
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 238
T KF KELGKFT L+ + L+GGDSM+ QF L SPD+++ATPGR +H + E++
Sbjct: 115 TLKFTKELGKFTDLRISLLVGGDSMETQFEELAQSPDVIIATPGRLMHHLAEVD 168
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
T+PL+L G DVVAMARTGSGKTA FL R
Sbjct: 59 TMPLILSGADVVAMARTGSGKTAAFLVPMLERL 91
>gi|449449653|ref|XP_004142579.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Cucumis sativus]
Length = 789
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 130/176 (73%), Gaps = 2/176 (1%)
Query: 11 GFEDPTVTISSNDD-NGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIP 69
G +D + +SS + +KK GGF+S GL V +G+ ++GY++PTPIQRKT+P
Sbjct: 2 GKQDEPLHVSSKAELKRREKQQKKAKSGGFESLGLSANVFRGIKRKGYRVPTPIQRKTMP 61
Query: 70 LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129
L+L G DVVAMARTGSGKTA FL+PMLE+LK H GVRALILSPTR+LALQT KF KE
Sbjct: 62 LILSGADVVAMARTGSGKTAAFLVPMLERLKQHEPQGGVRALILSPTRDLALQTLKFTKE 121
Query: 130 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
LGKFT L+ + L+GGDSM+ QF L SPD+++ATPGR +H + E+ ++ L +++Y
Sbjct: 122 LGKFTDLRISLLVGGDSMETQFEELAQSPDVIIATPGRLMHHLAEVDDMTLRTVEY 177
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 238
T KF KELGKFT L+ + L+GGDSM+ QF L SPD+++ATPGR +H + E++
Sbjct: 115 TLKFTKELGKFTDLRISLLVGGDSMETQFEELAQSPDVIIATPGRLMHHLAEVD 168
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
T+PL+L G DVVAMARTGSGKTA FL R
Sbjct: 59 TMPLILSGADVVAMARTGSGKTAAFLVPMLERL 91
>gi|160380704|sp|A7ESL7.2|DBP10_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp10
Length = 920
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/151 (62%), Positives = 120/151 (79%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV MARTGSGKTA F+I
Sbjct: 85 KKGGGFQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVI 144
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKL+ H+ G RALI+SP+RELALQT K VKE G+ T L+ L+GGDS++ QF
Sbjct: 145 PMIEKLRAHSVRVGARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSLEEQFGF 204
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM L LSS++Y
Sbjct: 205 MAANPDIVIATPGRFLHLKVEMSLDLSSMKY 235
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKTA F+
Sbjct: 118 TIPLVLDNQDVVGMARTGSGKTAAFVI 144
>gi|346325171|gb|EGX94768.1| dead box ATP-dependent rna helicase [Cordyceps militaris CM01]
Length = 891
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 122/151 (80%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ G+ +LK + ++G+ +PTPIQRKTIPLVL+ +DVV MARTGSGKTA F+I
Sbjct: 80 KKGGGFQAMGINANLLKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTAAFVI 139
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+E+L+ H+A G RALI+SP+RELA+QT K VKEL + T L++ L+GGDS++ QF
Sbjct: 140 PMIERLRAHSAQFGSRALIMSPSRELAIQTLKVVKELSRGTDLKAVLLVGGDSLEEQFGF 199
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 200 MAANPDIVIATPGRFLHLKVEMSLNLSSIKY 230
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPLVL+ +DVV MARTGSGKTA F+ R
Sbjct: 113 TIPLVLDRKDVVGMARTGSGKTAAFVIPMIERL 145
>gi|315045858|ref|XP_003172304.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
gi|311342690|gb|EFR01893.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
Length = 940
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 119/152 (78%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV MARTGSGKTA F+I
Sbjct: 89 KKGGGFQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVI 148
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKLK H+ G R LILSP+RELALQT K VKELG+ T L+ L+GGDS++ QF
Sbjct: 149 PMIEKLKNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGY 208
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
+ +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 209 MAGNPDIIIATPGRFLHLKVEMSLDLSSIRYA 240
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+ L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 178 TLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMSLDLSSI 237
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ ++ F + + TE++H
Sbjct: 238 RYAV--FDEADRLFEMGFAAQLTEILH 262
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 122 TIPLLLDDQDVVGMARTGSGKTAAFVI 148
>gi|448102171|ref|XP_004199738.1| Piso0_002281 [Millerozyma farinosa CBS 7064]
gi|359381160|emb|CCE81619.1| Piso0_002281 [Millerozyma farinosa CBS 7064]
Length = 939
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 122/158 (77%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N KK G FQSFG ++ ++KRGYK PTPIQRKTIPL++E RDVV MARTGSG
Sbjct: 97 NNPQAKKAKKGTFQSFGFSKFLMANIIKRGYKQPTPIQRKTIPLIMENRDVVGMARTGSG 156
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++P++EKLK+H+ G RALILSP+RELALQTF+ VKE K T L++ L+GGDS
Sbjct: 157 KTAAFVLPLIEKLKSHSPVLGARALILSPSRELALQTFRQVKEFSKGTDLRTVVLVGGDS 216
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++ F+ L +PDIVVATPGRFLH+ VEM+L LS+++Y
Sbjct: 217 LEEHFSSLMNNPDIVVATPGRFLHLKVEMQLDLSTMEY 254
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL++E RDVV MARTGSGKTA F+
Sbjct: 137 TIPLIMENRDVVGMARTGSGKTAAFVL 163
>gi|402082831|gb|EJT77849.1| ATP-dependent RNA helicase DBP10 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 951
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/154 (61%), Positives = 123/154 (79%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
K K GGGFQ+ GL +LK + ++G+ +PTPIQRK IPL+L+ RDVV MARTGSGKTA
Sbjct: 84 KSTKKGGGFQAMGLNGILLKAITRKGFSVPTPIQRKAIPLILDRRDVVGMARTGSGKTAA 143
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
F++PM+E+L+ H+A G RALI+SP+RELALQT K VKELGK T L++ L+GGDS+++Q
Sbjct: 144 FVVPMIERLRAHSARVGARALIMSPSRELALQTLKVVKELGKGTDLKTVLLVGGDSLEDQ 203
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
F + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 204 FGFMTTNPDIIIATPGRFLHLKVEMSLDLSSIRY 237
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IPL+L+ RDVV MARTGSGKTA F+ R
Sbjct: 120 AIPLILDRRDVVGMARTGSGKTAAFVVPMIERL 152
>gi|448098288|ref|XP_004198888.1| Piso0_002281 [Millerozyma farinosa CBS 7064]
gi|359380310|emb|CCE82551.1| Piso0_002281 [Millerozyma farinosa CBS 7064]
Length = 959
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 123/158 (77%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N KK G FQSFG ++ ++KRGYK PTPIQRKTIPL++E RDVV MARTGSG
Sbjct: 117 NNPQAKKAKKGTFQSFGFSKFLMANIIKRGYKQPTPIQRKTIPLIMENRDVVGMARTGSG 176
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++P++EKLK+H+ G RALILSP+RELALQTF+ VKE + T L++ L+GGDS
Sbjct: 177 KTAAFVLPLIEKLKSHSPVLGARALILSPSRELALQTFRQVKEFSRGTDLRTVVLVGGDS 236
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+++ F+ L +PDIVVATPGRFLH+ VEM+L LS+++Y
Sbjct: 237 LEDHFSSLMNNPDIVVATPGRFLHLKVEMQLDLSTMEY 274
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL++E RDVV MARTGSGKTA F+
Sbjct: 157 TIPLIMENRDVVGMARTGSGKTAAFVL 183
>gi|400596455|gb|EJP64229.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 895
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 123/151 (81%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ G+ +LK + ++G+ +PTPIQRKTIPLVL+ +DVV MARTGSGKTA F+I
Sbjct: 82 KKGGGFQAMGINATLLKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTAAFVI 141
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+E+L+ H+A G RALI+SP+RELA+QT K VKEL K T L++ L+GGDS++ QF
Sbjct: 142 PMIERLRAHSAKFGSRALIMSPSRELAIQTLKVVKELSKGTDLKAVLLVGGDSLEEQFGF 201
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM+L +SSI+Y
Sbjct: 202 MAANPDIVIATPGRFLHLKVEMKLDISSIKY 232
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPLVL+ +DVV MARTGSGKTA F+ R
Sbjct: 115 TIPLVLDRKDVVGMARTGSGKTAAFVIPMIERL 147
>gi|326473025|gb|EGD97034.1| ATP-dependent RNA helicase DBP10 [Trichophyton tonsurans CBS
112818]
Length = 941
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 120/152 (78%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV MARTGSGKTA F+I
Sbjct: 90 KKGGGFQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVI 149
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKL+ H+ G R LILSP+RELALQT K VKELG+ T L+ L+GGDS++ QF
Sbjct: 150 PMIEKLRNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGY 209
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
+ ++PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 210 MASNPDIIIATPGRFLHLKVEMNLDLSSIRYA 241
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+ L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 179 TLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASNPDIIIATPGRFLHLKVEMNLDLSSI 238
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ ++ F + + TE++H
Sbjct: 239 RYAV--FDEADRLFEMGFAAQLTEILH 263
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 123 TIPLLLDDQDVVGMARTGSGKTAAFVI 149
>gi|326477276|gb|EGE01286.1| ATP-dependent RNA helicase DBP10 [Trichophyton equinum CBS 127.97]
Length = 941
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 120/152 (78%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV MARTGSGKTA F+I
Sbjct: 90 KKGGGFQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVI 149
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKL+ H+ G R LILSP+RELALQT K VKELG+ T L+ L+GGDS++ QF
Sbjct: 150 PMIEKLRNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGY 209
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
+ ++PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 210 MASNPDIIIATPGRFLHLKVEMNLDLSSIRYA 241
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+ L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 179 TLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASNPDIIIATPGRFLHLKVEMNLDLSSI 238
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ ++ F + + TE++H
Sbjct: 239 RYAV--FDEADRLFEMGFAAQLTEILH 263
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 123 TIPLLLDDQDVVGMARTGSGKTAAFVI 149
>gi|121699888|ref|XP_001268209.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
gi|134034061|sp|A1CTZ6.1|DBP10_ASPCL RecName: Full=ATP-dependent RNA helicase dbp10
gi|119396351|gb|EAW06783.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
Length = 935
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/165 (57%), Positives = 124/165 (75%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++ +DVV
Sbjct: 72 SANRKASNLKGRTVKKGGGFQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVG 131
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKL++H+ G R LILSP+RELALQT K VKELGK T L+
Sbjct: 132 MARTGSGKTAAFVIPMIEKLRSHSTKVGARGLILSPSRELALQTLKVVKELGKGTDLKCV 191
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDIV+ATPGRFLH+ VEM L L SI+Y
Sbjct: 192 LLVGGDSLEEQFTMMAGNPDIVIATPGRFLHLKVEMNLDLYSIRY 236
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELGK T L+ L+GGDS++ QF + +PDIV+ATPGRFLH+ VEM L L SI
Sbjct: 175 TLKVVKELGKGTDLKCVLLVGGDSLEEQFTMMAGNPDIVIATPGRFLHLKVEMNLDLYSI 234
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ + F + + TE++H
Sbjct: 235 RYVV--FDEADRLFEMGFAAQLTEILH 259
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP++++ +DVV MARTGSGKTA F+
Sbjct: 119 TIPVIMDDQDVVGMARTGSGKTAAFVI 145
>gi|302506487|ref|XP_003015200.1| hypothetical protein ARB_06323 [Arthroderma benhamiae CBS 112371]
gi|291178772|gb|EFE34560.1| hypothetical protein ARB_06323 [Arthroderma benhamiae CBS 112371]
Length = 940
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 120/152 (78%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV MARTGSGKTA F+I
Sbjct: 89 KKGGGFQAMGLNPTLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVI 148
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKL+ H+ G R LILSP+RELALQT K VKELG+ T L+ L+GGDS++ QF
Sbjct: 149 PMIEKLRNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGY 208
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
+ ++PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 209 MASNPDIIIATPGRFLHLKVEMNLDLSSIRYA 240
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+ L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 178 TLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASNPDIIIATPGRFLHLKVEMNLDLSSI 237
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ ++ F + + TE++H
Sbjct: 238 RYAV--FDEADRLFEMGFAAQLTEILH 262
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 122 TIPLLLDDQDVVGMARTGSGKTAAFVI 148
>gi|302665674|ref|XP_003024446.1| hypothetical protein TRV_01409 [Trichophyton verrucosum HKI 0517]
gi|291188499|gb|EFE43835.1| hypothetical protein TRV_01409 [Trichophyton verrucosum HKI 0517]
Length = 940
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 120/152 (78%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV MARTGSGKTA F+I
Sbjct: 89 KKGGGFQAMGLNPTLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVI 148
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKL+ H+ G R LILSP+RELALQT K VKELG+ T L+ L+GGDS++ QF
Sbjct: 149 PMIEKLRNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGY 208
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
+ ++PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 209 MASNPDIIIATPGRFLHLKVEMNLDLSSIRYA 240
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+ L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 178 TLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASNPDIIIATPGRFLHLKVEMNLDLSSI 237
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ ++ F + + TE++H
Sbjct: 238 RYAV--FDEADRLFEMGFAAQLTEILH 262
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 122 TIPLLLDDQDVVGMARTGSGKTAAFVI 148
>gi|379699004|ref|NP_001243975.1| ATP-dependent RNA helicase DDX54-like protein [Bombyx mori]
gi|373882595|gb|AEY78647.1| ATP-dependent RNA helicase DDX54-like protein [Bombyx mori]
Length = 605
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 121/212 (57%), Positives = 148/212 (69%), Gaps = 12/212 (5%)
Query: 1 MKKKDPED-IEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKI 59
+K K+ +D + GF+ P N+ N KKKK G FQS GL F VLKG+ KRGYK
Sbjct: 2 LKPKELDDHLPGFDAPKADEPQNEPKNNQ--KKKKSSGAFQSMGLSFPVLKGITKRGYKQ 59
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKL--KTHAATSG--VRALILSP 115
PTPIQRKTIP+ L G+DVVAMARTGSGKTACF++P+LEKL + T G +RALILSP
Sbjct: 60 PTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSP 119
Query: 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVE 174
TRELALQT +FV+ELGKFT L S +LGG+S++ QF + +SPDIVVATPGRFLHI +E
Sbjct: 120 TRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFLHICIE 179
Query: 175 MELKLSSIQYTF----KFVKELGKFTKLQSTC 202
M LKL +I+ + ELG +LQ C
Sbjct: 180 MCLKLDNIKIVVFDEADRLFELGFGEQLQEIC 211
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Query: 164 TPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDI 222
TPG+ L ++ + ++Q T +FV+ELGKFT L S +LGG+S++ QF + +SPDI
Sbjct: 107 TPGKNLRALILSPTRELALQ-TLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDI 165
Query: 223 VVATPGRFLHIVVEMELKLSSIQLSLTD 250
VVATPGRFLHI +EM LKL +I++ + D
Sbjct: 166 VVATPGRFLHICIEMCLKLDNIKIVVFD 193
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
Query: 284 KKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLF 320
K+ Y Q T TIP+ L G+DVVAMARTGSGKTACF+
Sbjct: 54 KRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVL 93
>gi|449295671|gb|EMC91692.1| hypothetical protein BAUCODRAFT_301346 [Baudoinia compniacensis
UAMH 10762]
Length = 909
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 125/160 (78%)
Query: 25 NGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTG 84
N + K G FQ GL +LK + ++G+ +PTPIQRKT+PL+L+G+DVV MARTG
Sbjct: 65 NRKADSRTTKKAGAFQRMGLNANLLKAITRKGFTVPTPIQRKTVPLILDGQDVVGMARTG 124
Query: 85 SGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGG 144
SGKTA F+IPM+EKLK+H+A G RA++LSP+RELALQT K VK+ G+ T L++T L+GG
Sbjct: 125 SGKTAAFVIPMIEKLKSHSAKVGARAIVLSPSRELALQTLKVVKDFGRGTDLRATLLVGG 184
Query: 145 DSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DS+++QF + ++PDI++ATPGRF H+ VEM L+LSS++Y
Sbjct: 185 DSLEDQFGSIASNPDIIIATPGRFEHLKVEMGLELSSVKY 224
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
T+PL+L+G+DVV MARTGSGKTA F+
Sbjct: 107 TVPLILDGQDVVGMARTGSGKTAAFVI 133
>gi|322700977|gb|EFY92729.1| ATP-dependent RNA helicase dbp10 [Metarhizium acridum CQMa 102]
Length = 894
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 119/151 (78%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV MARTGSGKT F+I
Sbjct: 80 KKGGGFQAMGLNSNLLKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTGAFVI 139
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKL+ H+ G RALILSP+RELA+QT K VKE + T L++ L+GGDS++ QF
Sbjct: 140 PMIEKLRAHSGRFGSRALILSPSRELAIQTLKVVKEFARGTDLKAVLLVGGDSLEEQFGY 199
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 200 MAANPDIVIATPGRFLHLKVEMSLDLSSIKY 230
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKT F+
Sbjct: 113 TIPLVLDRKDVVGMARTGSGKTGAFVI 139
>gi|322706702|gb|EFY98282.1| ATP-dependent RNA helicase dbp10 [Metarhizium anisopliae ARSEF 23]
Length = 892
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 119/151 (78%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV MARTGSGKT F+I
Sbjct: 80 KKGGGFQAMGLNSNLLKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTGAFVI 139
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKL+ H+ G RALILSP+RELA+QT K VKE + T L++ L+GGDS++ QF
Sbjct: 140 PMIEKLRAHSGRFGSRALILSPSRELAIQTLKVVKEFARGTDLKAILLVGGDSLEEQFGY 199
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 200 MAANPDIVIATPGRFLHLKVEMSLDLSSIKY 230
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKT F+
Sbjct: 113 TIPLVLDRKDVVGMARTGSGKTGAFVI 139
>gi|327304757|ref|XP_003237070.1| ATP-dependent RNA helicase DBP10 [Trichophyton rubrum CBS 118892]
gi|326460068|gb|EGD85521.1| ATP-dependent RNA helicase DBP10 [Trichophyton rubrum CBS 118892]
Length = 940
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 119/152 (78%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV MARTGSGKTA F+I
Sbjct: 89 KKGGGFQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVI 148
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EK + H+ G R LILSP+RELALQT K VKELG+ T L+ L+GGDS++ QF
Sbjct: 149 PMIEKFRNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGY 208
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
+ ++PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 209 MASNPDIIIATPGRFLHLKVEMNLDLSSIRYA 240
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+ L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 178 TLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMASNPDIIIATPGRFLHLKVEMNLDLSSI 237
Query: 245 QLSLTDFKQDTSRIALDLVGDSTEMIH 271
+ ++ F + + TE++H
Sbjct: 238 RYAV--FDEADRLFEMGFAAQLTEILH 262
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPL+L+ +DVV MARTGSGKTA F+ +F
Sbjct: 122 TIPLLLDDQDVVGMARTGSGKTAAFVIPMIEKF 154
>gi|255582203|ref|XP_002531894.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223528461|gb|EEF30493.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 789
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/155 (60%), Positives = 122/155 (78%), Gaps = 1/155 (0%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
KKK GGF+S L V GV ++GY++PTPIQRKT+P++L G DVVAMARTGSGKTA
Sbjct: 21 KKKAKSGGFESLNLSPNVYNGVKRKGYRVPTPIQRKTMPIILSGSDVVAMARTGSGKTAA 80
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
FLIPMLE+LK H + G RALILSPTR+LALQT KF KELG+FT L+++ L+GGDSM++Q
Sbjct: 81 FLIPMLERLKQHVSQGGARALILSPTRDLALQTLKFTKELGRFTDLRASLLVGGDSMESQ 140
Query: 151 FARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
F L +PDI++ATPGR +H + E+ ++ L +++Y
Sbjct: 141 FEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEY 175
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
T+P++L G DVVAMARTGSGKTA FL R
Sbjct: 57 TMPIILSGSDVVAMARTGSGKTAAFLIPMLERL 89
>gi|428163077|gb|EKX32169.1| hypothetical protein GUITHDRAFT_121663 [Guillardia theta CCMP2712]
Length = 914
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/146 (64%), Positives = 116/146 (79%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S G + V +G+ +GYK+PTPIQRKTIPLVL G D+VAMARTGSGKTA FL+PM E+
Sbjct: 152 FESMGFSYPVYRGIKMKGYKVPTPIQRKTIPLVLRGHDLVAMARTGSGKTAAFLLPMFER 211
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LK H+ G+RALILSPTRELALQT KF KELGK+T L+ L+GGDSM++QFA L +P
Sbjct: 212 LKEHSVKVGIRALILSPTRELALQTLKFGKELGKYTGLRMALLVGGDSMEDQFAALAHNP 271
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
D+V+ATPGR LH + E+ L L S+QY
Sbjct: 272 DVVIATPGRLLHHLEEVGLTLQSVQY 297
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 25/33 (75%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPLVL G D+VAMARTGSGKTA FL F R
Sbjct: 180 TIPLVLRGHDLVAMARTGSGKTAAFLLPMFERL 212
>gi|296806549|ref|XP_002844084.1| ATP-dependent RNA helicase DBP10 [Arthroderma otae CBS 113480]
gi|238845386|gb|EEQ35048.1| ATP-dependent RNA helicase DBP10 [Arthroderma otae CBS 113480]
Length = 930
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/160 (59%), Positives = 123/160 (76%), Gaps = 1/160 (0%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPL+L+ +DVV MARTGSGKTA F+I
Sbjct: 85 KKGGGFQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVI 144
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKLK+H+ G R LILSP+RELALQT K VKELG+ T L+ L+GGDS++ QF
Sbjct: 145 PMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGY 204
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQ-YTFKFVKEL 192
+ +PDI++ATPGRFLH+ VEM L LSSI+ + F +L
Sbjct: 205 MAGNPDIIIATPGRFLHLKVEMSLDLSSIRLFEMGFAAQL 244
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 47/62 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKELG+ T L+ L+GGDS++ QF + +PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 174 TLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMSLDLSSI 233
Query: 245 QL 246
+L
Sbjct: 234 RL 235
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ +DVV MARTGSGKTA F+
Sbjct: 118 TIPLLLDDQDVVGMARTGSGKTAAFVI 144
>gi|406865244|gb|EKD18286.1| putative ATP-dependent RNA helicase dbp10 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1090
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 124/165 (75%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
+SN + N K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV
Sbjct: 196 ASNRKSSNVKGNSVKKGGGFQAMGLNSHLLKAISRKGFSVPTPIQRKTIPLVLDHKDVVG 255
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+E+LK+H+ G RA+I+SP+RELALQT K VKE + T L+
Sbjct: 256 MARTGSGKTAAFVIPMIERLKSHSVKVGARAIIMSPSRELALQTLKVVKEFSRGTDLKCV 315
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDIV+ATPGRFLH+ VEM L LSS++Y
Sbjct: 316 LLVGGDSLEEQFGFMAGNPDIVIATPGRFLHLQVEMSLDLSSVKY 360
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPLVL+ +DVV MARTGSGKTA F+ R
Sbjct: 243 TIPLVLDHKDVVGMARTGSGKTAAFVIPMIERL 275
>gi|150866736|ref|XP_001386424.2| hypothetical protein PICST_80003 [Scheffersomyces stipitis CBS
6054]
gi|158514831|sp|A3LZT3.2|DBP10_PICST RecName: Full=ATP-dependent RNA helicase DBP10
gi|149387992|gb|ABN68395.2| ATP dependent RNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 931
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/159 (58%), Positives = 122/159 (76%)
Query: 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
N KK G FQSFGL VL + K+GY+ PTPIQRKTIPL++ RDVV MARTGS
Sbjct: 88 ANNPQAKKAKAGSFQSFGLSKLVLTNIAKKGYRQPTPIQRKTIPLIMANRDVVGMARTGS 147
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA F +P++EKLK H+A G+RA+ILSP+RELALQT+K VKE K + L++ L GGD
Sbjct: 148 GKTAAFTLPVIEKLKGHSARVGIRAIILSPSRELALQTYKQVKEFSKGSDLRAIVLTGGD 207
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
S+++QF+ + ++PDIV+ATPGRFLH+ VEM+L L +++Y
Sbjct: 208 SLEDQFSSMVSNPDIVIATPGRFLHLQVEMQLDLKTVEY 246
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACF 318
AKK Y Q T TIPL++ RDVV MARTGSGKTA F
Sbjct: 115 AKKGYRQPTPIQRKTIPLIMANRDVVGMARTGSGKTAAF 153
>gi|356558698|ref|XP_003547640.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Glycine max]
Length = 778
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 118/149 (79%), Gaps = 1/149 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGF+S GL V KG+ ++GYK+PTPIQRKT+PL+L G DVVAMARTGSGKTA FL+PML
Sbjct: 18 GGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPML 77
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
+L H SGVRALILSPTR+LALQT KF KELG FT L+ + L+GGDSM++QF L
Sbjct: 78 HRLNQHIPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQ 137
Query: 157 SPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
SPDI++ATPGR +H + E+ ++ L S++Y
Sbjct: 138 SPDIIIATPGRLMHHLSEVDDMSLRSVEY 166
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSS 243
T KF KELG FT L+ + L+GGDSM++QF L SPDI++ATPGR +H + E+ ++ L S
Sbjct: 104 TLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRS 163
Query: 244 IQLSLTD 250
++ + D
Sbjct: 164 VEYVVFD 170
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
T+PL+L G DVVAMARTGSGKTA FL R ++
Sbjct: 48 TMPLILSGSDVVAMARTGSGKTAAFLVPMLHRLNQ 82
>gi|223590189|sp|A5DLR3.2|DBP10_PICGU RecName: Full=ATP-dependent RNA helicase DBP10
gi|190347777|gb|EDK40116.2| hypothetical protein PGUG_04214 [Meyerozyma guilliermondii ATCC
6260]
Length = 914
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/182 (54%), Positives = 131/182 (71%), Gaps = 12/182 (6%)
Query: 15 PTVTISSNDDN------------GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTP 62
P++ +S ++D+ N K G F SFGL +LK + K+G+K PTP
Sbjct: 65 PSLELSDDEDDESRPSEVAEYFSNNKLQATKAKAGSFASFGLSKFLLKNIAKKGFKQPTP 124
Query: 63 IQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122
IQRKTIPLV+E RDVV MARTGSGKTA F++P++EKLK+H+ GVRA+ILSP+RELALQ
Sbjct: 125 IQRKTIPLVMESRDVVGMARTGSGKTAAFVLPVVEKLKSHSPKVGVRAVILSPSRELALQ 184
Query: 123 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 182
TFK VKE K T L+S L+GGDS+++QF+ + +PDI+VATPGRFLH+ VEM L L ++
Sbjct: 185 TFKQVKEFTKGTDLRSIVLIGGDSLEDQFSSMMTNPDILVATPGRFLHLKVEMNLDLKTV 244
Query: 183 QY 184
+Y
Sbjct: 245 EY 246
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLF 320
AKK + Q T TIPLV+E RDVV MARTGSGKTA F+
Sbjct: 115 AKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTAAFVL 155
>gi|302758696|ref|XP_002962771.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
gi|300169632|gb|EFJ36234.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
Length = 786
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 118/149 (79%), Gaps = 1/149 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGF+S GL + + + K+GY +PTPIQRKT+PL+L G DVVAMARTGSGKTA FLIPML
Sbjct: 24 GGFESLGLSPPIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPML 83
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
EKL+ H+ G RALILSPTRELALQTFKF KELG+ T L+ T L+GGDSM+ QF +L
Sbjct: 84 EKLRAHSPKPGARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQLSK 143
Query: 157 SPDIVVATPGRFLHIVVEME-LKLSSIQY 184
+PDI++ATPGR +H + E+E + L S++Y
Sbjct: 144 NPDILIATPGRLMHHLSEVEGMSLKSVEY 172
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
T+PL+L G DVVAMARTGSGKTA FL
Sbjct: 54 TLPLILAGNDVVAMARTGSGKTAAFLI 80
>gi|444315728|ref|XP_004178521.1| hypothetical protein TBLA_0B01590 [Tetrapisispora blattae CBS 6284]
gi|387511561|emb|CCH59002.1| hypothetical protein TBLA_0B01590 [Tetrapisispora blattae CBS 6284]
Length = 929
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/177 (54%), Positives = 129/177 (72%), Gaps = 6/177 (3%)
Query: 14 DPTVTISSNDDNGNTG------DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKT 67
D V + S+DD+ N D KK G F SFG ++ + K+GYK PTPIQRKT
Sbjct: 76 DGNVEVESDDDDINDYFATTHLDTKKFKKGSFASFGFNRFIMNNINKKGYKQPTPIQRKT 135
Query: 68 IPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127
IPL+L+ RD+V MARTGSGKTA FL+PM+EKLKTH++ GVR +ILSP+RE+A+QT +
Sbjct: 136 IPLILQKRDIVGMARTGSGKTAAFLLPMIEKLKTHSSKIGVRGVILSPSREIAIQTHRVF 195
Query: 128 KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KE K T+L+S L GGDS+++QF + ++PD+V+ATPGRFLH+ VEM+L L S++Y
Sbjct: 196 KEFSKNTELRSVLLTGGDSLEDQFGMMMSNPDVVIATPGRFLHLKVEMKLDLKSVEY 252
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 284 KKKYVQ---VTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
KK Y Q + TIPL+L+ RD+V MARTGSGKTA FL
Sbjct: 122 KKGYKQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFLL 161
>gi|302758194|ref|XP_002962520.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
gi|300169381|gb|EFJ35983.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
Length = 821
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 118/149 (79%), Gaps = 1/149 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGF+S GL + + + K+GY +PTPIQRKT+PL+L G DVVAMARTGSGKTA FLIPML
Sbjct: 53 GGFESLGLSPSIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPML 112
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
EKL+ H+ G RALILSPTRELALQTFKF KELG+ T L+ T L+GGDSM+ QF +L
Sbjct: 113 EKLRAHSPKPGARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQLSK 172
Query: 157 SPDIVVATPGRFLHIVVEME-LKLSSIQY 184
+PDI++ATPGR +H + E+E + L S++Y
Sbjct: 173 NPDILIATPGRLMHHLSEVEGMSLKSVEY 201
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
T+PL+L G DVVAMARTGSGKTA FL
Sbjct: 83 TLPLILAGNDVVAMARTGSGKTAAFLI 109
>gi|168065191|ref|XP_001784538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663919|gb|EDQ50659.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 122/155 (78%), Gaps = 1/155 (0%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
+KKK GGF++ GL V + V ++GY+IPTPIQRKT+PL+L G DVVAMARTGSGKTA
Sbjct: 1 EKKKKSGGFETLGLSLPVFRAVKRKGYRIPTPIQRKTLPLILAGYDVVAMARTGSGKTAA 60
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
FLIPM+EKL H+ +G RA+ILSP+RELALQTFKF KEL K+T L+ L+GGDSM+ Q
Sbjct: 61 FLIPMIEKLVEHSNNAGARAVILSPSRELALQTFKFCKELSKYTDLKIAILVGGDSMEAQ 120
Query: 151 FARLHASPDIVVATPGRFLHIVVEME-LKLSSIQY 184
F +L +PD+++ATPGR +H + E+E + L +++Y
Sbjct: 121 FEQLAGNPDVIIATPGRLMHHLSEVEGMSLRTVEY 155
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
T+PL+L G DVVAMARTGSGKTA FL
Sbjct: 37 TLPLILAGYDVVAMARTGSGKTAAFLI 63
>gi|342884574|gb|EGU84781.1| hypothetical protein FOXB_04676 [Fusarium oxysporum Fo5176]
Length = 897
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 119/151 (78%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRK IPL+L+ +D+V MARTGSGKTA F+I
Sbjct: 80 KKGGGFQAMGLNSNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVI 139
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+E+L+ H+A G RALILSP+RELA+QT K VKE + T L+ L+GGDS++ QF
Sbjct: 140 PMIERLRAHSARFGTRALILSPSRELAIQTLKVVKEFSRGTDLKCVLLVGGDSLEEQFGS 199
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 200 MAANPDIVIATPGRFLHLKVEMSLDLSSIKY 230
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IPL+L+ +D+V MARTGSGKTA F+ R
Sbjct: 113 AIPLILDRKDLVGMARTGSGKTAAFVIPMIERL 145
>gi|356506148|ref|XP_003521849.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Glycine max]
Length = 778
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGF+S GL V KG+ ++GYK+PTPIQRKT+PL+L G DVVAMARTGSGKTA FL+PML
Sbjct: 18 GGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPML 77
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
+L H SGVRALILSPTR+LALQT KF KELG FT L+ + L+GGDSM+ QF L
Sbjct: 78 HRLNQHIPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMEIQFEELAQ 137
Query: 157 SPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
SPDI++ATPGR +H + E+ ++ L S++Y
Sbjct: 138 SPDIIIATPGRLMHHLSEVDDMSLRSVEY 166
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSS 243
T KF KELG FT L+ + L+GGDSM+ QF L SPDI++ATPGR +H + E+ ++ L S
Sbjct: 104 TLKFTKELGHFTDLRVSLLVGGDSMEIQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRS 163
Query: 244 IQLSLTD 250
++ + D
Sbjct: 164 VEYVVFD 170
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
T+PL+L G DVVAMARTGSGKTA FL R ++
Sbjct: 48 TMPLILSGSDVVAMARTGSGKTAAFLVPMLHRLNQ 82
>gi|294658755|ref|XP_461087.2| DEHA2F16720p [Debaryomyces hansenii CBS767]
gi|218512019|sp|Q6BL34.2|DBP10_DEBHA RecName: Full=ATP-dependent RNA helicase DBP10
gi|202953360|emb|CAG89469.2| DEHA2F16720p [Debaryomyces hansenii CBS767]
Length = 932
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 93/159 (58%), Positives = 120/159 (75%)
Query: 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
N KK G F SFG +L + K+G+K PTPIQRKTIPL++E RDVV MARTGS
Sbjct: 86 ANNPQAKKAKNGSFPSFGFSKFLLTNISKKGFKQPTPIQRKTIPLIMENRDVVGMARTGS 145
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA F +P++EKLK+H+ GVRA+ILSP+RELA QTFK VKE K T L+S L+GGD
Sbjct: 146 GKTAAFTLPLVEKLKSHSPRVGVRAIILSPSRELASQTFKQVKEFSKGTDLRSIVLIGGD 205
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
S++ QF+ + +PD++VATPGRFLH+ VEMEL+L +++Y
Sbjct: 206 SLEEQFSSMMTNPDVIVATPGRFLHLKVEMELELKTVEY 244
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
TFK VKE K T L+S L+GGDS++ QF+ + +PD++VATPGRFLH+ VEMEL+L ++
Sbjct: 183 TFKQVKEFSKGTDLRSIVLIGGDSLEEQFSSMMTNPDVIVATPGRFLHLKVEMELELKTV 242
Query: 245 QLSLTD 250
+ + D
Sbjct: 243 EYIVFD 248
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 22/25 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
TIPL++E RDVV MARTGSGKTA F
Sbjct: 127 TIPLIMENRDVVGMARTGSGKTAAF 151
>gi|169608063|ref|XP_001797451.1| hypothetical protein SNOG_07098 [Phaeosphaeria nodorum SN15]
gi|160701550|gb|EAT85749.2| hypothetical protein SNOG_07098 [Phaeosphaeria nodorum SN15]
Length = 798
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 117/146 (80%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ+ GL +LK + ++G+KIPTPIQRK +PL+L+G DVV MARTGSGKTA F+IPM+E+
Sbjct: 80 FQAMGLNVALLKAIAQKGFKIPTPIQRKAVPLILQGDDVVGMARTGSGKTAAFVIPMIER 139
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LKTH+A G R +I+SP+RELALQT K VKE G+ T L++ L+GGDS++ QF + +P
Sbjct: 140 LKTHSAKVGARGVIMSPSRELALQTLKVVKEFGRGTDLRTILLVGGDSLEEQFNSMTTNP 199
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGRFLH+ VEM L LSS+QY
Sbjct: 200 DIIIATPGRFLHLKVEMGLDLSSVQY 225
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+PL+L+G DVV MARTGSGKTA F+ R
Sbjct: 108 AVPLILQGDDVVGMARTGSGKTAAFVIPMIERL 140
>gi|46136501|ref|XP_389942.1| hypothetical protein FG09766.1 [Gibberella zeae PH-1]
gi|91206536|sp|Q4HZ42.1|DBP10_GIBZE RecName: Full=ATP-dependent RNA helicase DBP10
Length = 897
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 119/151 (78%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRK IPL+L+ +D+V MARTGSGKTA F+I
Sbjct: 79 KKGGGFQAMGLNNNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVI 138
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKL+ H+A G RALI+SP+RELA+QT K VKE + T L+ L+GGDS++ QF
Sbjct: 139 PMIEKLRAHSARFGTRALIMSPSRELAIQTLKVVKEFSRGTDLKCVLLVGGDSLEEQFGY 198
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 199 MAANPDIVIATPGRFLHLKVEMSLDLSSIKY 229
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IPL+L+ +D+V MARTGSGKTA F+
Sbjct: 112 AIPLILDRKDLVGMARTGSGKTAAFVI 138
>gi|408398412|gb|EKJ77543.1| hypothetical protein FPSE_02293 [Fusarium pseudograminearum CS3096]
Length = 897
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 119/151 (78%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
K GGGFQ+ GL +LK + ++G+ +PTPIQRK IPL+L+ +D+V MARTGSGKTA F+I
Sbjct: 79 KKGGGFQAMGLNNNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVI 138
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
PM+EKL+ H+A G RALI+SP+RELA+QT K VKE + T L+ L+GGDS++ QF
Sbjct: 139 PMIEKLRAHSARFGTRALIMSPSRELAIQTLKVVKEFSRGTDLKCVLLVGGDSLEEQFGY 198
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ A+PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 199 MAANPDIVIATPGRFLHLKVEMSLDLSSIKY 229
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IPL+L+ +D+V MARTGSGKTA F+
Sbjct: 112 AIPLILDRKDLVGMARTGSGKTAAFVI 138
>gi|410077309|ref|XP_003956236.1| hypothetical protein KAFR_0C01060 [Kazachstania africana CBS 2517]
gi|372462820|emb|CCF57101.1| hypothetical protein KAFR_0C01060 [Kazachstania africana CBS 2517]
Length = 973
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 125/179 (69%), Gaps = 7/179 (3%)
Query: 13 EDPTVTISSNDDN-------GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQR 65
ED + NDD+ N K K G F SFGL +L + KRG++ PTPIQR
Sbjct: 90 EDSKKQANDNDDDVNSYFSTNNLNTKTKHKKGSFASFGLSKLILTNISKRGFRQPTPIQR 149
Query: 66 KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125
KTIPL+L+ RD+V MARTGSGKTA F++PM+EKLKTH++ G RA+ILSP+RELA+QT
Sbjct: 150 KTIPLILQSRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHN 209
Query: 126 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KE K + L+S L GGDS+++QF + A+PD+++ATPGRFLH+ VEM L L S++Y
Sbjct: 210 VFKEFSKGSDLRSVLLTGGDSLEDQFGMIMANPDVIIATPGRFLHLKVEMNLDLKSVEY 268
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 151 TIPLILQSRDIVGMARTGSGKTAAFVL 177
>gi|118575170|sp|Q0UMB6.1|DBP10_PHANO RecName: Full=ATP-dependent RNA helicase DBP10
Length = 878
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 117/146 (80%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ+ GL +LK + ++G+KIPTPIQRK +PL+L+G DVV MARTGSGKTA F+IPM+E+
Sbjct: 80 FQAMGLNVALLKAIAQKGFKIPTPIQRKAVPLILQGDDVVGMARTGSGKTAAFVIPMIER 139
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LKTH+A G R +I+SP+RELALQT K VKE G+ T L++ L+GGDS++ QF + +P
Sbjct: 140 LKTHSAKVGARGVIMSPSRELALQTLKVVKEFGRGTDLRTILLVGGDSLEEQFNSMTTNP 199
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGRFLH+ VEM L LSS+QY
Sbjct: 200 DIIIATPGRFLHLKVEMGLDLSSVQY 225
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+PL+L+G DVV MARTGSGKTA F+ R
Sbjct: 108 AVPLILQGDDVVGMARTGSGKTAAFVIPMIERL 140
>gi|358416383|ref|XP_615157.5| PREDICTED: ATP-dependent RNA helicase DDX54 [Bos taurus]
Length = 885
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/164 (60%), Positives = 121/164 (73%), Gaps = 9/164 (5%)
Query: 30 DKKKKMGGGFQSFG-----LGFEVLKGVLKRGYKIPT--PIQ--RKTIPLVLEGRDVVAM 80
+KKKK GGFQS G + PT PI RKTIP++L+G+DVVAM
Sbjct: 89 NKKKKKSGGFQSMGGPXXXXXXXXXXXXXXXXXRSPTSFPIHKWRKTIPMILDGKDVVAM 148
Query: 81 ARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTC 140
ARTGSGKTACFLIPM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++
Sbjct: 149 ARTGSGKTACFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTAL 208
Query: 141 LLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+LGGD M++QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 ILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 252
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L+G+DVVAMARTGSGKTACFL F R
Sbjct: 135 TIPMILDGKDVVAMARTGSGKTACFLIPMFERL 167
>gi|344301065|gb|EGW31377.1| ATP-dependent RNA helicase DBP10 [Spathaspora passalidarum NRRL
Y-27907]
Length = 918
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/159 (59%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
Query: 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
N KK G F SFGL +L + K+G++ PTPIQRKTIPLV+E RDVV MARTGS
Sbjct: 91 ANNPATKKAKAGSFASFGLSKFLLTNIAKKGFRQPTPIQRKTIPLVMENRDVVGMARTGS 150
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA F++P++EKLK +A SGVRA+ILSP+RELALQT+K VKE G T LQ+T L+GGD
Sbjct: 151 GKTAAFVLPLIEKLKVRSA-SGVRAIILSPSRELALQTYKQVKEFGHGTNLQTTVLIGGD 209
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+++ F+++ + PDI+V TPGRFLH+ VEM+ LS+IQY
Sbjct: 210 TLEEDFSKMVSKPDIIVCTPGRFLHLKVEMDYDLSTIQY 248
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLF 320
AKK + Q T TIPLV+E RDVV MARTGSGKTA F+
Sbjct: 118 AKKGFRQPTPIQRKTIPLVMENRDVVGMARTGSGKTAAFVL 158
>gi|146415030|ref|XP_001483485.1| hypothetical protein PGUG_04214 [Meyerozyma guilliermondii ATCC
6260]
Length = 914
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/182 (54%), Positives = 129/182 (70%), Gaps = 12/182 (6%)
Query: 15 PTVTISSNDDN------------GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTP 62
P++ +S ++D+ N K G F SFGL +LK + K+G+K PTP
Sbjct: 65 PSLELSDDEDDESRPSEVAEYFSNNKLQATKAKAGSFASFGLSKFLLKNIAKKGFKQPTP 124
Query: 63 IQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122
IQRKTIPLV+E RDVV MARTGSGKTA F++P++EKLK+H+ GVRA+ILSP RELALQ
Sbjct: 125 IQRKTIPLVMESRDVVGMARTGSGKTAAFVLPVVEKLKSHSPKVGVRAVILSPLRELALQ 184
Query: 123 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 182
TFK VKE K T L+S L+GGDS+++QF + +PDI+VATPGRFLH+ VEM L L ++
Sbjct: 185 TFKQVKEFTKGTDLRSIVLIGGDSLEDQFLSMMTNPDILVATPGRFLHLKVEMNLDLKTV 244
Query: 183 QY 184
+Y
Sbjct: 245 EY 246
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 48/66 (72%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
TFK VKE K T L+S L+GGDS+++QF + +PDI+VATPGRFLH+ VEM L L ++
Sbjct: 185 TFKQVKEFTKGTDLRSIVLIGGDSLEDQFLSMMTNPDILVATPGRFLHLKVEMNLDLKTV 244
Query: 245 QLSLTD 250
+ + D
Sbjct: 245 EYIVFD 250
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLF 320
AKK + Q T TIPLV+E RDVV MARTGSGKTA F+
Sbjct: 115 AKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTAAFVL 155
>gi|19113831|ref|NP_592919.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|1175401|sp|Q09719.1|DBP10_SCHPO RecName: Full=ATP-dependent RNA helicase dbp10
gi|914885|emb|CAA90465.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
pombe]
Length = 848
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/177 (57%), Positives = 124/177 (70%), Gaps = 13/177 (7%)
Query: 21 SNDDNGN-------------TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKT 67
S++D+GN G K FQS GL +L+ + K+G+K PTPIQRKT
Sbjct: 40 SDEDDGNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKT 99
Query: 68 IPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127
IPL+LEGRDVV MARTGSGKTA F+IPM+E LK+ A S RALILSP RELALQT K V
Sbjct: 100 IPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVV 159
Query: 128 KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
K+ K T L+S ++GG S++ QF+ L PDIVVATPGRFLH+ VEM+L+LSSI+Y
Sbjct: 160 KDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEY 216
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+LEGRDVV MARTGSGKTA F+
Sbjct: 99 TIPLLLEGRDVVGMARTGSGKTAAFVI 125
>gi|158513663|sp|A2YV85.2|RH29_ORYSI RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
Length = 851
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 1/160 (0%)
Query: 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
G KKK GGF+S GL EV +GV +GY++PTPIQRK +PL+L G D+ AMARTGS
Sbjct: 38 GEGASKKKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGS 97
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA FL+PM+++L+ H A +G+RALILSPTR+LA QT KF ++LGKFT L+ + ++GGD
Sbjct: 98 GKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGD 157
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQY 184
SM++QF L +PDI++ATPGR +H + E+E L L +++Y
Sbjct: 158 SMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEY 197
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSS 243
T KF ++LGKFT L+ + ++GGDSM++QF L +PDI++ATPGR +H + E+E L L +
Sbjct: 135 TLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRT 194
Query: 244 IQLSLTDFKQDTSRIALDLVGDSTEMIHK 272
++ + F + S +L L+ +++HK
Sbjct: 195 VEYVV--FDEADSLFSLGLIQQLHDILHK 221
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
+PL+L G D+ AMARTGSGKTA FL R R
Sbjct: 79 AMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRR 113
>gi|50551521|ref|XP_503234.1| YALI0D24497p [Yarrowia lipolytica]
gi|74689555|sp|Q6C7X8.1|DBP10_YARLI RecName: Full=ATP-dependent RNA helicase DBP10
gi|49649102|emb|CAG81435.1| YALI0D24497p [Yarrowia lipolytica CLIB122]
Length = 926
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 118/152 (77%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
KK G F GL VLK + ++G+K PTPIQRKTIPLVLEG+DVV MARTGSGKTA F+
Sbjct: 98 KKSSGSFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFV 157
Query: 93 IPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
+PMLEKLK H+A G RA+ILSP+RELALQT K VK+ T L+ L+GGDS++ QF
Sbjct: 158 LPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFSAGTDLRLAMLVGGDSLEEQFK 217
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ ++PDI++ATPGRFLH+ VEMEL L+S++Y
Sbjct: 218 MMMSNPDIIIATPGRFLHLKVEMELSLASVEY 249
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 285 KKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
K+ + TIPLVLEG+DVV MARTGSGKTA F+
Sbjct: 123 KQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVL 158
>gi|218201153|gb|EEC83580.1| hypothetical protein OsI_29242 [Oryza sativa Indica Group]
Length = 883
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 1/160 (0%)
Query: 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
G KKK GGF+S GL EV +GV +GY++PTPIQRK +PL+L G D+ AMARTGS
Sbjct: 38 GEGASKKKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGS 97
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA FL+PM+++L+ H A +G+RALILSPTR+LA QT KF ++LGKFT L+ + ++GGD
Sbjct: 98 GKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGD 157
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQY 184
SM++QF L +PDI++ATPGR +H + E+E L L +++Y
Sbjct: 158 SMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEY 197
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSS 243
T KF ++LGKFT L+ + ++GGDSM++QF L +PDI++ATPGR +H + E+E L L +
Sbjct: 135 TLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRT 194
Query: 244 IQLSLTDFKQDTSRIALDLVGDSTEMIHK 272
++ + F + S +L L+ +++HK
Sbjct: 195 VEYVV--FDEADSLFSLGLIQQLHDILHK 221
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
+PL+L G D+ AMARTGSGKTA FL R R
Sbjct: 79 AMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRR 113
>gi|359492294|ref|XP_002279081.2| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Vitis vinifera]
Length = 784
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 122/155 (78%), Gaps = 1/155 (0%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
KKK GGF+S GL V + + ++GY++PTPIQRKT+PL+L G DVVAMARTGSGKTA
Sbjct: 21 KKKARSGGFESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAA 80
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
FLIPMLE+LK H +GVRALILSPTR+LALQT KF KEL ++T ++ + L+GGDSM++Q
Sbjct: 81 FLIPMLERLKQHVPQTGVRALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQ 140
Query: 151 FARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
F L +PDI++ATPGR +H + E+ ++ L +++Y
Sbjct: 141 FEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEY 175
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 238
T KF KEL ++T ++ + L+GGDSM++QF L +PDI++ATPGR +H + E++
Sbjct: 113 TLKFTKELARYTDVRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVD 166
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
T+PL+L G DVVAMARTGSGKTA FL R
Sbjct: 57 TMPLILSGCDVVAMARTGSGKTAAFLIPMLERL 89
>gi|302142729|emb|CBI19932.3| unnamed protein product [Vitis vinifera]
Length = 786
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 122/155 (78%), Gaps = 1/155 (0%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
KKK GGF+S GL V + + ++GY++PTPIQRKT+PL+L G DVVAMARTGSGKTA
Sbjct: 21 KKKARSGGFESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAA 80
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
FLIPMLE+LK H +GVRALILSPTR+LALQT KF KEL ++T ++ + L+GGDSM++Q
Sbjct: 81 FLIPMLERLKQHVPQTGVRALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQ 140
Query: 151 FARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
F L +PDI++ATPGR +H + E+ ++ L +++Y
Sbjct: 141 FEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEY 175
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 238
T KF KEL ++T ++ + L+GGDSM++QF L +PDI++ATPGR +H + E++
Sbjct: 113 TLKFTKELARYTDVRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVD 166
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
T+PL+L G DVVAMARTGSGKTA FL R
Sbjct: 57 TMPLILSGCDVVAMARTGSGKTAAFLIPMLERL 89
>gi|344232323|gb|EGV64202.1| DEAD-domain-containing protein [Candida tenuis ATCC 10573]
Length = 910
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/153 (58%), Positives = 119/153 (77%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
KK G FQSFG ++ ++K+G+K PTPIQRK IPL+++ RDVV MARTGSGKTA F
Sbjct: 83 KKAKSGTFQSFGFSKFLIGNIIKKGFKQPTPIQRKAIPLIMDSRDVVGMARTGSGKTAAF 142
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
+PM+EKLK H+A SG RA+ILSP+RELALQT+K VKE T L+ L+GGDS+D+QF
Sbjct: 143 TLPMVEKLKAHSAKSGSRAIILSPSRELALQTYKQVKEFSHRTDLRIMLLVGGDSLDDQF 202
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ + +PDI++ATPGRF+H+ +EM+L L SI+Y
Sbjct: 203 SAMMTNPDIIIATPGRFMHLKIEMDLNLKSIEY 235
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
IPL+++ RDVV MARTGSGKTA F
Sbjct: 118 AIPLIMDSRDVVGMARTGSGKTAAF 142
>gi|380486597|emb|CCF38600.1| ATP-dependent RNA helicase DBP10 [Colletotrichum higginsianum]
Length = 853
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/146 (61%), Positives = 118/146 (80%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ+ GL +L+ + K+G+ +PTPIQRKTIPL+L+ +DVV MARTGSGKTA F+IPM+E+
Sbjct: 43 FQAMGLNANLLRAITKKGFSVPTPIQRKTIPLILDRKDVVGMARTGSGKTAAFVIPMIER 102
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L+ H+A G RALI+SP+RELALQT K VKE K T L+ L+GGDSM++QF+ + ++P
Sbjct: 103 LRAHSAKVGTRALIMSPSRELALQTLKVVKEFSKGTDLKCILLVGGDSMEDQFSMMSSNP 162
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 163 DIVIATPGRFLHLKVEMGLDLSSIKY 188
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPL+L+ +DVV MARTGSGKTA F+ R
Sbjct: 71 TIPLILDRKDVVGMARTGSGKTAAFVIPMIERL 103
>gi|320581590|gb|EFW95810.1| Putative ATP-dependent RNA helicase of the DEAD-box protein family
[Ogataea parapolymorpha DL-1]
Length = 1254
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/176 (53%), Positives = 127/176 (72%), Gaps = 6/176 (3%)
Query: 15 PTVTISSNDDNGNTGD------KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTI 68
P++ +S +D+ T KK G F SFGL +L + K+GYK PTPIQRKTI
Sbjct: 59 PSLELSDDDEQETTNYFLNQPLAKKAKSGTFASFGLAKYILANLSKKGYKQPTPIQRKTI 118
Query: 69 PLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128
PL++ RDVV MARTGSGKTA FL+P++EKLKTH A GVRA++LSP+RELA+QT K K
Sbjct: 119 PLIMSNRDVVGMARTGSGKTAAFLLPLIEKLKTHVAKIGVRAIVLSPSRELAMQTSKQFK 178
Query: 129 ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
E + + L+S L+GGDSM++QF + A+PD+++ATPGRFLH+ EM+L L +++Y
Sbjct: 179 EFSRGSDLRSLLLIGGDSMEDQFGAMMANPDVIIATPGRFLHLKTEMQLDLRTVEY 234
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLF 320
+KK Y Q T TIPL++ RDVV MARTGSGKTA FL
Sbjct: 103 SKKGYKQPTPIQRKTIPLIMSNRDVVGMARTGSGKTAAFLL 143
>gi|115476424|ref|NP_001061808.1| Os08g0416100 [Oryza sativa Japonica Group]
gi|158513705|sp|A3BT52.2|RH29_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
gi|113623777|dbj|BAF23722.1| Os08g0416100 [Oryza sativa Japonica Group]
gi|222640554|gb|EEE68686.1| hypothetical protein OsJ_27320 [Oryza sativa Japonica Group]
Length = 851
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 123/160 (76%), Gaps = 1/160 (0%)
Query: 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
G K+K GGF+S GL EV +GV +GY++PTPIQRK +PL+L G D+ AMARTGS
Sbjct: 38 GEGASKRKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGS 97
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA FL+PM+++L+ H A +G+RALILSPTR+LA QT KF ++LGKFT L+ + ++GGD
Sbjct: 98 GKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGD 157
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQY 184
SM++QF L +PDI++ATPGR +H + E+E L L +++Y
Sbjct: 158 SMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEY 197
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSS 243
T KF ++LGKFT L+ + ++GGDSM++QF L +PDI++ATPGR +H + E+E L L +
Sbjct: 135 TLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRT 194
Query: 244 IQLSLTDFKQDTSRIALDLVGDSTEMIHK 272
++ + F + S +L L+ +++HK
Sbjct: 195 VEYVV--FDEADSLFSLGLIQQLHDILHK 221
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
+PL+L G D+ AMARTGSGKTA FL R R
Sbjct: 79 AMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRR 113
>gi|51449873|gb|AAU01909.1| putative ATP-dependent RNA helicase [Oryza sativa Indica Group]
Length = 828
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 123/160 (76%), Gaps = 1/160 (0%)
Query: 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
G K+K GGF+S GL EV +GV +GY++PTPIQRK +PL+L G D+ AMARTGS
Sbjct: 15 GEGASKRKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGS 74
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA FL+PM+++L+ H A +G+RALILSPTR+LA QT KF ++LGKFT L+ + ++GGD
Sbjct: 75 GKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGD 134
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQY 184
SM++QF L +PDI++ATPGR +H + E+E L L +++Y
Sbjct: 135 SMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEY 174
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSS 243
T KF ++LGKFT L+ + ++GGDSM++QF L +PDI++ATPGR +H + E+E L L +
Sbjct: 112 TLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRT 171
Query: 244 IQLSLTDFKQDTSRIALDLVGDSTEMIHK 272
++ + F + S +L L+ +++HK
Sbjct: 172 VEYVV--FDEADSLFSLGLIQQLHDILHK 198
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
+PL+L G D+ AMARTGSGKTA FL R R
Sbjct: 56 AMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRR 90
>gi|37573051|dbj|BAC98579.1| putative ATP-dependent RNA-helicase [Oryza sativa Japonica Group]
Length = 828
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 123/160 (76%), Gaps = 1/160 (0%)
Query: 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
G K+K GGF+S GL EV +GV +GY++PTPIQRK +PL+L G D+ AMARTGS
Sbjct: 15 GEGASKRKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGS 74
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA FL+PM+++L+ H A +G+RALILSPTR+LA QT KF ++LGKFT L+ + ++GGD
Sbjct: 75 GKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGD 134
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQY 184
SM++QF L +PDI++ATPGR +H + E+E L L +++Y
Sbjct: 135 SMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEY 174
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSS 243
T KF ++LGKFT L+ + ++GGDSM++QF L +PDI++ATPGR +H + E+E L L +
Sbjct: 112 TLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRT 171
Query: 244 IQLSLTDFKQDTSRIALDLVGDSTEMIHK 272
++ + F + S +L L+ +++HK
Sbjct: 172 VEYVV--FDEADSLFSLGLIQQLHDILHK 198
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
+PL+L G D+ AMARTGSGKTA FL R R
Sbjct: 56 AMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRR 90
>gi|313233521|emb|CBY09693.1| unnamed protein product [Oikopleura dioica]
Length = 800
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 119/154 (77%), Gaps = 1/154 (0%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++K K GGFQS GL V KG+ +RGYKIPTPIQRK IP +++G+DVVAMARTGSGKTA
Sbjct: 30 NRKGKKSGGFQSMGLSHGVFKGIFRRGYKIPTPIQRKCIPKIIDGKDVVAMARTGSGKTA 89
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FLIP+LE+LK G R +ILSPTRELA+QT KF +L KF L + +LGGDS+DN
Sbjct: 90 AFLIPILERLKKR-EQRGPRVVILSPTRELAIQTAKFTNDLSKFCNLSVSVILGGDSLDN 148
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
QF +L +PDIV+ATPGR LH++VEM+ +L+ ++
Sbjct: 149 QFTQLDQNPDIVIATPGRLLHLLVEMDRRLNYVK 182
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
IP +++G+DVVAMARTGSGKTA FL R +
Sbjct: 68 IPKIIDGKDVVAMARTGSGKTAAFLIPILERLKK 101
>gi|50291719|ref|XP_448292.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690788|sp|Q6FNA2.1|DBP10_CANGA RecName: Full=ATP-dependent RNA helicase DBP10
gi|49527604|emb|CAG61253.1| unnamed protein product [Candida glabrata]
Length = 969
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 118/159 (74%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
NT K K G F SFGL +L + KRG++ PTPIQRKTIPL+L+ RD+V MARTGSG
Sbjct: 105 NTDAKSKHKKGSFASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSG 164
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++PM+EKLKTH++ G RA+ILSP+RELA+QT KE + T L+S L GGDS
Sbjct: 165 KTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFSRGTHLRSVLLTGGDS 224
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
+++QF + +PD+++ATPGRFLH+ VEM L L S++Y
Sbjct: 225 LEDQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYA 263
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 145 TIPLILQNRDIVGMARTGSGKTAAFVL 171
>gi|403217984|emb|CCK72476.1| hypothetical protein KNAG_0K01110 [Kazachstania naganishii CBS
8797]
Length = 1001
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 125/172 (72%), Gaps = 6/172 (3%)
Query: 20 SSNDD------NGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE 73
+S+DD N +K+K G F SFGL +L V ++G++ PTPIQRKTIPL+L+
Sbjct: 115 ASDDDVNAYFSTNNQAEKQKFKKGSFASFGLSKAILSNVTRKGFRQPTPIQRKTIPLILQ 174
Query: 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133
RD+V MARTGSGKTA F++PM+EKLKTH++ GVRA+ILSP+RELALQT K+ K
Sbjct: 175 NRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGVRAIILSPSRELALQTHNVFKDFSKG 234
Query: 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
T L+S L GGDS++ QF + ++PD+V+ATPGRFLH+ VEM L L +++Y
Sbjct: 235 THLRSVLLTGGDSLEEQFGMMMSNPDVVIATPGRFLHLKVEMNLVLKTVEYA 286
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Query: 274 RQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 155 RKGFRQPTPIQRK-------TIPLILQNRDIVGMARTGSGKTAAFVL 194
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 227 PGRFL-HIVVEMELKLSSIQLSLTDFKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKK 285
P FL H +++ +Q++ + F D ++ A DL D +HKQ +V KWD +K
Sbjct: 792 PNFFLSHYAPAADIQDKQLQVT-SGFTNDAAQAAYDLNDDDKVQVHKQTATV-KWDKKRK 849
Query: 286 KYV--QVTDDTIPLVLE-GRDVVAMARTG 311
KYV Q D+ ++ E G+ + A R+G
Sbjct: 850 KYVNMQGIDNKKYIIGESGQKIAASFRSG 878
>gi|389644026|ref|XP_003719645.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae 70-15]
gi|152013475|sp|A4R5B8.1|DBP10_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP10
gi|351639414|gb|EHA47278.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae 70-15]
Length = 914
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 88/146 (60%), Positives = 118/146 (80%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ+ GL +L+ + ++G+ +PTPIQRK+IPL+L+ RDVV MARTGSGKTA F+IPM+E+
Sbjct: 92 FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIER 151
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L+ H+A G RALI+SP+RELALQT K VKE GK T L++ L+GGDS+++QF + +P
Sbjct: 152 LRAHSARVGARALIMSPSRELALQTLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTNP 211
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 212 DIIIATPGRFLHLKVEMSLDLSSIKY 237
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKE GK T L++ L+GGDS+++QF + +PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 176 TLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTNPDIIIATPGRFLHLKVEMSLDLSSI 235
Query: 245 QLSLTD 250
+ + D
Sbjct: 236 KYVVFD 241
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+IPL+L+ RDVV MARTGSGKTA F+ R
Sbjct: 120 SIPLILDRRDVVGMARTGSGKTAAFVIPMIERL 152
>gi|398392503|ref|XP_003849711.1| hypothetical protein MYCGRDRAFT_75563 [Zymoseptoria tritici IPO323]
gi|339469588|gb|EGP84687.1| hypothetical protein MYCGRDRAFT_75563 [Zymoseptoria tritici IPO323]
Length = 833
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 119/143 (83%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
GL +LK + ++G+ +PTPIQRKTIPL+L+G+DVV MARTGSGKTA F+IPM+EKLK+
Sbjct: 1 MGLNTHLLKAITRKGFSVPTPIQRKTIPLILDGQDVVGMARTGSGKTAAFVIPMIEKLKS 60
Query: 102 HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIV 161
H+A G RA++LSP+RELALQT K VKE+ + T L++T L+GGDS++ QF+ + ++PDI+
Sbjct: 61 HSAKVGARAIVLSPSRELALQTLKVVKEMSRGTDLRTTLLVGGDSLEEQFSSMASNPDII 120
Query: 162 VATPGRFLHIVVEMELKLSSIQY 184
+ATPGRF H+ VEM L+LSS++Y
Sbjct: 121 IATPGRFEHLKVEMSLELSSVKY 143
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+G+DVV MARTGSGKTA F+
Sbjct: 26 TIPLILDGQDVVGMARTGSGKTAAFVI 52
>gi|310795114|gb|EFQ30575.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 903
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 118/146 (80%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ+ GL +L+ + K+G+ +PTPIQRKTIPL+++ +DVV MARTGSGKTA F+IPM+E+
Sbjct: 90 FQAMGLNANLLRAITKKGFSVPTPIQRKTIPLIMDRKDVVGMARTGSGKTAAFVIPMIER 149
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L+ H+A G RALI+SP+RELALQT K VKE K T L+ L+GGDSM++QF+ + ++P
Sbjct: 150 LRAHSAKVGTRALIMSPSRELALQTLKVVKEFSKGTDLKCILLVGGDSMEDQFSMMASNP 209
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 210 DIVIATPGRFLHLKVEMGLDLSSIKY 235
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPL+++ +DVV MARTGSGKTA F+ R
Sbjct: 118 TIPLIMDRKDVVGMARTGSGKTAAFVIPMIERL 150
>gi|156846782|ref|XP_001646277.1| hypothetical protein Kpol_1032p11 [Vanderwaltozyma polyspora DSM
70294]
gi|160380605|sp|A7TGW7.1|DBP10_VANPO RecName: Full=ATP-dependent RNA helicase DBP10
gi|156116952|gb|EDO18419.1| hypothetical protein Kpol_1032p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 977
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 130/188 (69%), Gaps = 18/188 (9%)
Query: 15 PTVTISSNDDNGNTG------------------DKKKKMGGGFQSFGLGFEVLKGVLKRG 56
P++ IS ++D+ N G +K K G F SFG +L V K+G
Sbjct: 81 PSLEISDDEDSNNKGDHEDDDDDLNDYFSINNSEKSKHKKGSFPSFGFSKLILSNVHKKG 140
Query: 57 YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116
++ PTPIQRKTIPL+L+ RD+V MARTGSGKTA F++PM+EKLK+H++ G RA+ILSP+
Sbjct: 141 FRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKSHSSKIGARAVILSPS 200
Query: 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 176
RELALQT + KE K T L+S L GGDS+++QF+ + ++PD++VATPGRFLH+ VEM
Sbjct: 201 RELALQTHRVFKEFSKGTHLRSVLLTGGDSLEDQFSMMMSNPDVIVATPGRFLHLKVEMS 260
Query: 177 LKLSSIQY 184
L L +++Y
Sbjct: 261 LDLKTVEY 268
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 151 TIPLILQKRDIVGMARTGSGKTAAFVL 177
>gi|213402583|ref|XP_002172064.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
yFS275]
gi|212000111|gb|EEB05771.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
yFS275]
Length = 854
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 96/161 (59%), Positives = 121/161 (75%), Gaps = 3/161 (1%)
Query: 27 NTGDKKKKMGG---GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMART 83
N K KK+ G FQS GL +L+ + K+G+K PTPIQRKTIP VL+GRDVV MART
Sbjct: 52 NRKTKGKKLSGKATNFQSMGLSTTMLRAITKKGFKAPTPIQRKTIPFVLDGRDVVGMART 111
Query: 84 GSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLG 143
GSGKTA F+IPM+EKLK A SG RA+ILSP+RELALQT K VK+ K T L++ ++G
Sbjct: 112 GSGKTAAFVIPMIEKLKASRAQSGSRAIILSPSRELALQTMKVVKDFSKDTNLRTAVIVG 171
Query: 144 GDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
G+ ++ QF+ L PDI+VATPGRFLH+ VEM+L+L SI+Y
Sbjct: 172 GEGLEEQFSILTNKPDIIVATPGRFLHLKVEMKLELGSIEY 212
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIP VL+GRDVV MARTGSGKTA F+
Sbjct: 95 TIPFVLDGRDVVGMARTGSGKTAAFVI 121
>gi|440472202|gb|ELQ41079.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae Y34]
gi|440478179|gb|ELQ59033.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae P131]
Length = 880
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 88/146 (60%), Positives = 118/146 (80%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ+ GL +L+ + ++G+ +PTPIQRK+IPL+L+ RDVV MARTGSGKTA F+IPM+E+
Sbjct: 92 FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIER 151
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L+ H+A G RALI+SP+RELALQT K VKE GK T L++ L+GGDS+++QF + +P
Sbjct: 152 LRAHSARVGARALIMSPSRELALQTLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTNP 211
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 212 DIIIATPGRFLHLKVEMSLDLSSIKY 237
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K VKE GK T L++ L+GGDS+++QF + +PDI++ATPGRFLH+ VEM L LSSI
Sbjct: 176 TLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTNPDIIIATPGRFLHLKVEMSLDLSSI 235
Query: 245 QLSLTD 250
+ + D
Sbjct: 236 KYVVFD 241
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+IPL+L+ RDVV MARTGSGKTA F+ R
Sbjct: 120 SIPLILDRRDVVGMARTGSGKTAAFVIPMIERL 152
>gi|254578362|ref|XP_002495167.1| ZYRO0B04972p [Zygosaccharomyces rouxii]
gi|238938057|emb|CAR26234.1| ZYRO0B04972p [Zygosaccharomyces rouxii]
Length = 979
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 88/159 (55%), Positives = 119/159 (74%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N + KK G F SFG +L + K+G++ PTPIQRKTIPL+L+ RD+V MARTGSG
Sbjct: 113 NNSESKKHKKGSFPSFGFSKFILNNINKKGFRQPTPIQRKTIPLILQNRDIVGMARTGSG 172
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++PM+EKLK H++ G RA+ILSP+RE+A+QT+K KE K + L+S L GGDS
Sbjct: 173 KTAAFVLPMIEKLKAHSSKIGARAVILSPSREIAMQTYKVFKEFSKGSDLRSVLLTGGDS 232
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
+++QF + ++PD+VVATPGRFLH+ VEM L L S++Y
Sbjct: 233 LEDQFGMMMSNPDVVVATPGRFLHLKVEMNLNLKSVEYA 271
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 48/66 (72%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T+K KE K + L+S L GGDS+++QF + ++PD+VVATPGRFLH+ VEM L L S+
Sbjct: 209 TYKVFKEFSKGSDLRSVLLTGGDSLEDQFGMMMSNPDVVVATPGRFLHLKVEMNLNLKSV 268
Query: 245 QLSLTD 250
+ ++ D
Sbjct: 269 EYAVFD 274
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 153 TIPLILQNRDIVGMARTGSGKTAAFVL 179
>gi|254566739|ref|XP_002490480.1| Putative ATP-dependent RNA helicase of the DEAD-box protein family
[Komagataella pastoris GS115]
gi|238030276|emb|CAY68199.1| Putative ATP-dependent RNA helicase of the DEAD-box protein family
[Komagataella pastoris GS115]
gi|328350871|emb|CCA37271.1| ATP-dependent RNA helicase [Komagataella pastoris CBS 7435]
Length = 1003
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 119/153 (77%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
KK G F SFGL +L + ++GY+ PTPIQRKT+PL++ RDVV MARTGSGKTA F
Sbjct: 110 KKAKAGSFASFGLSKFLLGNIARKGYRQPTPIQRKTMPLIMSNRDVVGMARTGSGKTAAF 169
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
L+P++EKLK H+A G+RA+ILSP+RELA+QTF+ KE + T L++ L+GGDSM++QF
Sbjct: 170 LLPLVEKLKVHSAKVGIRAIILSPSRELAVQTFRQFKEFSRGTNLRAMLLIGGDSMEDQF 229
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ ++PD+V+ATPGRFLH+ VEM L L SI+Y
Sbjct: 230 GAMMSNPDVVIATPGRFLHLKVEMSLDLKSIEY 262
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLF 320
A+K Y Q T T+PL++ RDVV MARTGSGKTA FL
Sbjct: 131 ARKGYRQPTPIQRKTMPLIMSNRDVVGMARTGSGKTAAFLL 171
>gi|312084924|ref|XP_003144474.1| DEAD/DEAH box helicase [Loa loa]
gi|307760364|gb|EFO19598.1| DEAD/DEAH box helicase [Loa loa]
Length = 783
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 122/154 (79%), Gaps = 1/154 (0%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++K++ GG+Q+ GL + KG+ K+G++ PTPIQRK IPL+++G+D+VAM+RTGSGKTA
Sbjct: 24 NRKQRQAGGWQAIGLDHTLFKGIQKKGFRQPTPIQRKAIPLIIDGKDIVAMSRTGSGKTA 83
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
F+IP+L+KLK G+RALI+ PTRELA+QTF VKELG+FT L+ L+GGD ++
Sbjct: 84 AFVIPILQKLKVRD-MKGIRALIIEPTRELAIQTFIVVKELGRFTGLRCAVLVGGDRIEE 142
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
QF +H PDIVVATPGR LH++VEM+ +LS++Q
Sbjct: 143 QFQAVHEKPDIVVATPGRLLHVIVEMDFRLSAVQ 176
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
Q++ R+ P ++K IPL+++G+D+VAM+RTGSGKTA F+
Sbjct: 47 QKKGFRQPTPIQRK-------AIPLIIDGKDIVAMSRTGSGKTAAFVI 87
>gi|260827419|ref|XP_002608662.1| hypothetical protein BRAFLDRAFT_211958 [Branchiostoma floridae]
gi|229294014|gb|EEN64672.1| hypothetical protein BRAFLDRAFT_211958 [Branchiostoma floridae]
Length = 757
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 99/156 (63%), Positives = 121/156 (77%), Gaps = 9/156 (5%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + KGV+K+GYK+PTPIQRK IP++++G+DVVAMARTGSGKTA
Sbjct: 26 NKKKKKSGGFQSMGLSHGIFKGVMKKGYKVPTPIQRKCIPIIMDGKDVVAMARTGSGKTA 85
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FLIPM EKL+ H +TSG RALIL+PTRELALQT KF KELG+FT L++ +LGGDSM++
Sbjct: 86 AFLIPMFEKLRAH-STSGARALILAPTRELALQTMKFTKELGRFTGLRAALILGGDSMED 144
Query: 150 QFARLHASPDIVVATPGRFLHIV---VEMELKLSSI 182
QFA LH +PDI + FL IV V E K +I
Sbjct: 145 QFAALHENPDICI-----FLVIVCTLVSFEYKKHTI 175
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFF 323
IP++++G+DVVAMARTGSGKTA FL F
Sbjct: 64 IPIIMDGKDVVAMARTGSGKTAAFLIPMF 92
>gi|406604990|emb|CCH43589.1| hypothetical protein BN7_3142 [Wickerhamomyces ciferrii]
Length = 958
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 120/152 (78%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K G F SFGL +L + K+G+K PTPIQRKTIPL+L+ RD+V MARTGSGKTA F
Sbjct: 111 KAKAGSFASFGLSKFILNNISKKGFKQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFS 170
Query: 93 IPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
+P++E+LK H+A G RA++LSP+RELA+QT+K +KE + T L+S L+GGDS+++QF+
Sbjct: 171 LPLVERLKIHSAKVGARAIVLSPSRELAIQTYKVIKEFSRGTDLRSVLLIGGDSLEDQFS 230
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ ++PDIV+ATPGRFLH+ VEM+L L +++Y
Sbjct: 231 LMMSNPDIVIATPGRFLHLKVEMQLDLKTVEY 262
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
TIPL+L+ RD+V MARTGSGKTA F
Sbjct: 145 TIPLILQNRDIVGMARTGSGKTAAF 169
>gi|170590083|ref|XP_001899802.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158592721|gb|EDP31318.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 782
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 122/154 (79%), Gaps = 1/154 (0%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++K++ GG+Q+ GL + KG+ K+G++ PTPIQRK IP++++G+D+VAM+RTGSGKTA
Sbjct: 24 NRKQRHAGGWQTIGLDHTLFKGIQKKGFRQPTPIQRKAIPIIIDGKDIVAMSRTGSGKTA 83
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
F+IP+L+KLK G+RALI+ PTRELA+QTF VKELG+FT L+ L+GGD ++
Sbjct: 84 AFVIPILQKLKVRD-MKGIRALIIEPTRELAMQTFTVVKELGRFTGLRCAVLVGGDRIEE 142
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
QF +H PDIV+ATPGR LH++VEM+ +LS++Q
Sbjct: 143 QFQTVHEKPDIVIATPGRLLHVIVEMDFRLSAVQ 176
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
TF VKELG+FT L+ L+GGD ++ QF +H PDIV+ATPGR LH++VEM+ +LS++
Sbjct: 116 TFTVVKELGRFTGLRCAVLVGGDRIEEQFQTVHEKPDIVIATPGRLLHVIVEMDFRLSAV 175
Query: 245 QLSLTD 250
Q+ + D
Sbjct: 176 QVIVFD 181
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
Q++ R+ P ++K IP++++G+D+VAM+RTGSGKTA F+
Sbjct: 47 QKKGFRQPTPIQRK-------AIPIIIDGKDIVAMSRTGSGKTAAFVI 87
>gi|430814638|emb|CCJ28161.1| unnamed protein product [Pneumocystis jirovecii]
Length = 772
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/159 (60%), Positives = 122/159 (76%), Gaps = 2/159 (1%)
Query: 28 TGDKKKKMGGG-FQSF-GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
T +K++K+ F++ GL +LK + +G+KIPTPIQRKTIPL+L G DVVAMARTGS
Sbjct: 219 TNEKQRKINSSRFKTMVGLSLTILKAIKYKGFKIPTPIQRKTIPLLLNGMDVVAMARTGS 278
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA F+IPM+E+LK H A G RALILSP RELALQTFK VKEL K T L+ L+GG+
Sbjct: 279 GKTAAFVIPMIERLKMHQAKVGSRALILSPNRELALQTFKVVKELKKGTNLKHILLVGGE 338
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
S++ QF + +PDI+VATPGRFLH+ VEM+L L +I+Y
Sbjct: 339 SLEEQFEIMSINPDIIVATPGRFLHLKVEMDLDLRTIEY 377
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L G DVVAMARTGSGKTA F+
Sbjct: 260 TIPLLLNGMDVVAMARTGSGKTAAFVI 286
>gi|297842471|ref|XP_002889117.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp.
lyrata]
gi|297334958|gb|EFH65376.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp.
lyrata]
Length = 834
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S LG V + K+GYK+PTPIQRKT+PL+L G DVVAMARTGSGKTA FLIPMLEK
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LK H GVRALILSPTR+LA QT KF KELGKFT L+ + L+GGDSM++QF L P
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGP 149
Query: 159 DIVVATPGRFLHIVVEM-ELKLSSIQY 184
D+++ATPGR +H++ E+ ++ L +++Y
Sbjct: 150 DVIIATPGRLMHLLSEVDDMTLRTVEY 176
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
T+PL+L G DVVAMARTGSGKTA FL
Sbjct: 58 TMPLILSGVDVVAMARTGSGKTAAFLI 84
>gi|430811574|emb|CCJ30960.1| unnamed protein product [Pneumocystis jirovecii]
Length = 906
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/159 (60%), Positives = 122/159 (76%), Gaps = 2/159 (1%)
Query: 28 TGDKKKKMGGG-FQSF-GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
T +K++K+ F++ GL +LK + +G+KIPTPIQRKTIPL+L G DVVAMARTGS
Sbjct: 353 TNEKQRKINSSRFKTMVGLSLTILKAIKYKGFKIPTPIQRKTIPLLLNGMDVVAMARTGS 412
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA F+IPM+E+LK H A G RALILSP RELALQTFK VKEL K T L+ L+GG+
Sbjct: 413 GKTAAFVIPMIERLKMHQAKVGSRALILSPNRELALQTFKVVKELKKGTNLKHILLVGGE 472
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
S++ QF + +PDI+VATPGRFLH+ VEM+L L +I+Y
Sbjct: 473 SLEEQFEIMSINPDIIVATPGRFLHLKVEMDLDLRTIEY 511
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIPL+L G DVVAMARTGSGKTA F+ R
Sbjct: 394 TIPLLLNGMDVVAMARTGSGKTAAFVIPMIERL 426
>gi|334183955|ref|NP_177829.5| DEAD-box helicase domain-containing protein [Arabidopsis thaliana]
gi|75318355|sp|O49289.1|RH29_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 29
gi|2829912|gb|AAC00620.1| Similar ATP-dependent RNA Helicase [Arabidopsis thaliana]
gi|332197806|gb|AEE35927.1| DEAD-box helicase domain-containing protein [Arabidopsis thaliana]
Length = 845
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S LG V + K+GYK+PTPIQRKT+PL+L G DVVAMARTGSGKTA FLIPMLEK
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LK H GVRALILSPTR+LA QT KF KELGKFT L+ + L+GGDSM++QF L P
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGP 149
Query: 159 DIVVATPGRFLHIVVEM-ELKLSSIQY 184
D+++ATPGR +H++ E+ ++ L +++Y
Sbjct: 150 DVIIATPGRLMHLLSEVDDMTLRTVEY 176
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
T+PL+L G DVVAMARTGSGKTA FL
Sbjct: 58 TMPLILSGVDVVAMARTGSGKTAAFLI 84
>gi|241999744|ref|XP_002434515.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215497845|gb|EEC07339.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 771
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 8/158 (5%)
Query: 33 KKMGGGFQSFG------LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
KK GGFQS G + + +L G + PI + TIP++LEGRDVVAMARTGSG
Sbjct: 10 KKKSGGFQSMGNERADRVNWNLLTSAQLAG--LSPPILKGTIPVILEGRDVVAMARTGSG 67
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA FL+P+L+KLK + +G RAL+LSPTRELALQT KF KELGKFT L+ST +LGGD+
Sbjct: 68 KTAAFLVPILDKLKARSLQAGARALVLSPTRELALQTHKFAKELGKFTDLKSTVILGGDN 127
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
M++QF +H +PD+++ATPGRFLHIV+EM+LKLSSI+Y
Sbjct: 128 MEDQFEAIHENPDVLIATPGRFLHIVMEMDLKLSSIKY 165
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/26 (88%), Positives = 25/26 (96%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
TIP++LEGRDVVAMARTGSGKTA FL
Sbjct: 48 TIPVILEGRDVVAMARTGSGKTAAFL 73
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 251 FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYVQVTDD 293
F+Q S+ LDL D +M+ KQ+ S KWD KK++V+ +D
Sbjct: 619 FEQQASQAVLDLTADDEKMLQKQK-STMKWDRKKKRFVREGND 660
>gi|407411508|gb|EKF33546.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 825
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 117/152 (76%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
KKK GGGFQSFGL VL GVL+ GY +PTPIQRK IP +++G DVVAMARTGSGKTA F
Sbjct: 23 KKKRGGGFQSFGLDKPVLDGVLRLGYNVPTPIQRKAIPSMIQGNDVVAMARTGSGKTAAF 82
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
LIPML LK+H+ T G+R L+L+PTREL+LQ +F +L KF L+ L+GG+S++ QF
Sbjct: 83 LIPMLNLLKSHSKTVGIRGLVLAPTRELSLQILRFGIQLNKFLDLRFAALVGGNSLEQQF 142
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L ++PDIVVATPGR LHI+ E LKLS ++
Sbjct: 143 ELLGSNPDIVVATPGRLLHIMEEASLKLSMVK 174
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +++G DVVAMARTGSGKTA FL
Sbjct: 58 AIPSMIQGNDVVAMARTGSGKTAAFLI 84
>gi|50312293|ref|XP_456179.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74689956|sp|Q6CIR0.1|DBP10_KLULA RecName: Full=ATP-dependent RNA helicase DBP10
gi|49645315|emb|CAG98887.1| KLLA0F24684p [Kluyveromyces lactis]
Length = 973
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/177 (53%), Positives = 125/177 (70%), Gaps = 5/177 (2%)
Query: 13 EDPTVTISSNDD-----NGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKT 67
++ T S+DD N K G F SFGL VL + K+G++ PTPIQRKT
Sbjct: 97 DEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKT 156
Query: 68 IPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127
IPL+L+ RD+V MARTGSGKTA F++PM+EKLKTH+A GVRA+ILSP+RELA+QT +
Sbjct: 157 IPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVF 216
Query: 128 KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KE K + L+S L GGDS+++QF + +PD+V+ATPGRFLH+ VEM L L S++Y
Sbjct: 217 KEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEY 273
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 7/52 (13%)
Query: 269 MIHKQRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+I+ ++ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 138 LINISKKGFRQPTPIQRK-------TIPLILQKRDIVGMARTGSGKTAAFVL 182
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 232 HIVVEMELKLSSIQLSLTDFKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV--Q 289
H +++ +Q+S + F D S A DL D +HKQ +V KWD +KKYV Q
Sbjct: 774 HFAPTSDIQDKQLQIS-SGFTNDASNAAFDLANDDKVQVHKQTATV-KWDKKRKKYVNTQ 831
Query: 290 VTDDTIPLVLE-GRDVVAMARTG 311
D+ ++ E G+ + A R+G
Sbjct: 832 GLDNKKYIIGESGQKIPASFRSG 854
>gi|68465679|ref|XP_723201.1| likely DEAD box ATP-dependent RNA helicase [Candida albicans
SC5314]
gi|68465972|ref|XP_723054.1| likely DEAD box ATP-dependent RNA helicase [Candida albicans
SC5314]
gi|74680391|sp|Q5ANB2.1|DBP10_CANAL RecName: Full=ATP-dependent RNA helicase DBP10
gi|46445068|gb|EAL04339.1| likely DEAD box ATP-dependent RNA helicase [Candida albicans
SC5314]
gi|46445224|gb|EAL04494.1| likely DEAD box ATP-dependent RNA helicase [Candida albicans
SC5314]
gi|238880918|gb|EEQ44556.1| hypothetical protein CAWG_02828 [Candida albicans WO-1]
Length = 908
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 96/186 (51%), Positives = 125/186 (67%), Gaps = 17/186 (9%)
Query: 15 PTVTISSNDDNG----------------NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYK 58
P++ +S N+ N N KK G F SFGL +L + K+GYK
Sbjct: 61 PSLELSDNEGNNDDDDDDDSKINSYFINNNPTAKKAKAGSFASFGLTKFILANIAKKGYK 120
Query: 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118
PTPIQRKTIPL++EGRDVV MARTGSGKTA F++P++E+LK+ GVRA+ILSP+RE
Sbjct: 121 QPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERLKSRQP-GGVRAVILSPSRE 179
Query: 119 LALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK 178
LALQT+K VKE T LQS L+GGDS++ F+++ PDI+V TPGRFLH+ VEM+
Sbjct: 180 LALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKMMTKPDIIVCTPGRFLHLKVEMQYD 239
Query: 179 LSSIQY 184
L ++QY
Sbjct: 240 LMTVQY 245
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
AKK Y Q T TIPL++EGRDVV MARTGSGKTA F+ R
Sbjct: 115 AKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERL 161
>gi|241953401|ref|XP_002419422.1| ATP-dependent RNA helicase, putative; ribosome biogenesis protein,
putative [Candida dubliniensis CD36]
gi|223642762|emb|CAX43016.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 933
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/159 (58%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
N KK G F SFGL +L + K+GYK PTPIQRKTIPL++EGRDVV MARTGS
Sbjct: 96 NNNPTAKKAKAGSFASFGLTKFILTNIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGS 155
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA F++P++E+LK+ GVRA+ILSP+RELALQT+K VKE T LQS L+GGD
Sbjct: 156 GKTAAFVLPLIERLKSRQ-LGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGD 214
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
S++ F+++ PDI+V TPGRFLH+ VEM+ L +IQY
Sbjct: 215 SLEEDFSKMMTKPDIIVCTPGRFLHLKVEMQYDLMTIQY 253
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
AKK Y Q T TIPL++EGRDVV MARTGSGKTA F+ R
Sbjct: 123 AKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERL 169
>gi|453081414|gb|EMF09463.1| DEAD-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 849
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 115/143 (80%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
GL +LK + ++G+ +PTPIQRKTIPL+L+G+DVV MARTGSGKTA F+IPM+EKLK
Sbjct: 1 MGLNTHLLKAITRKGFNVPTPIQRKTIPLILDGQDVVGMARTGSGKTAAFVIPMIEKLKA 60
Query: 102 HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIV 161
H+A G RA+ILSP+RELALQT K VKE+GK T L++ ++GGD +++ F + A+PDI+
Sbjct: 61 HSAKFGARAMILSPSRELALQTLKVVKEMGKGTDLRTVLIVGGDGIEDNFGSMAANPDII 120
Query: 162 VATPGRFLHIVVEMELKLSSIQY 184
+ATPGRF H+ VEM L LSS++Y
Sbjct: 121 IATPGRFEHVKVEMGLDLSSVKY 143
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+G+DVV MARTGSGKTA F+
Sbjct: 26 TIPLILDGQDVVGMARTGSGKTAAFVI 52
>gi|1279685|emb|CAA96458.1| unknown [Saccharomyces cerevisiae]
gi|1431010|emb|CAA98590.1| DBP10 [Saccharomyces cerevisiae]
Length = 995
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 118/158 (74%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N +K K G F SFGL VL + ++G++ PTPIQRKTIPL+L+ RD+V MARTGSG
Sbjct: 127 NNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSG 186
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++PM+EKLK+H+ G RA+ILSP+RELA+QTF K+ + T+L+S L GGDS
Sbjct: 187 KTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDS 246
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++ QF + +PD+++ATPGRFLH+ VEM L L S++Y
Sbjct: 247 LEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEY 284
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 153 KRKGFRQPTPIQRK-------TIPLILQSRDIVGMARTGSGKTAAFIL 193
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 245 QLSLTD-FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV--QVTDDTIPLVLE- 300
QL +T+ F D ++ A DL D +HKQ +V KWD +KKYV Q D+ ++ E
Sbjct: 803 QLQITNGFANDAAQAAYDLNSDDKVQVHKQTATV-KWDKKRKKYVNTQGIDNKKYIIGES 861
Query: 301 GRDVVAMARTG 311
G+ + A R+G
Sbjct: 862 GQKIAASFRSG 872
>gi|366991885|ref|XP_003675708.1| hypothetical protein NCAS_0C03530 [Naumovozyma castellii CBS 4309]
gi|342301573|emb|CCC69343.1| hypothetical protein NCAS_0C03530 [Naumovozyma castellii CBS 4309]
Length = 977
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 117/156 (75%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
DK K G F SFGL ++ + ++G++ PTPIQRKTIPL+L+ RD+V MARTGSGKTA
Sbjct: 118 DKSKHKKGSFPSFGLSKFIISNITRKGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTA 177
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
F++PM+EKLKTH+ G RA+ILSP+RELA+QT K+ K T+L+S L GGDS+++
Sbjct: 178 AFILPMIEKLKTHSGKIGARAVILSPSRELAMQTHNVFKDFSKGTQLRSVLLTGGDSLED 237
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
QF + +PD+++ATPGRFLH+ VEM L L SI+Y
Sbjct: 238 QFGMMMNNPDVIIATPGRFLHLKVEMNLDLKSIEYA 273
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Query: 274 RQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 142 RKGFRQPTPIQRK-------TIPLILQNRDIVGMARTGSGKTAAFIL 181
>gi|259145212|emb|CAY78476.1| Dbp10p [Saccharomyces cerevisiae EC1118]
gi|349577043|dbj|GAA22212.1| K7_Dbp10p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 995
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 118/158 (74%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N +K K G F SFGL VL + ++G++ PTPIQRKTIPL+L+ RD+V MARTGSG
Sbjct: 127 NNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSG 186
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++PM+EKLK+H+ G RA+ILSP+RELA+QTF K+ + T+L+S L GGDS
Sbjct: 187 KTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDS 246
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++ QF + +PD+++ATPGRFLH+ VEM L L S++Y
Sbjct: 247 LEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEY 284
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 153 KRKGFRQPTPIQRK-------TIPLILQSRDIVGMARTGSGKTAAFIL 193
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 245 QLSLTD-FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV--QVTDDTIPLVLE- 300
QL +T+ F D ++ A DL D +HKQ +V KWD +KKYV Q D+ ++ E
Sbjct: 803 QLQITNGFANDAAQAAYDLNSDDKVQVHKQTATV-KWDKKRKKYVNTQGIDNKKYIIGES 861
Query: 301 GRDVVAMARTG 311
G+ + A R+G
Sbjct: 862 GQKIAASFRSG 872
>gi|160380606|sp|A6ZXU0.1|DBP10_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP10; AltName: Full=DEAD
box protein 10
gi|151941964|gb|EDN60320.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
gi|190405046|gb|EDV08313.1| hypothetical protein SCRG_00534 [Saccharomyces cerevisiae RM11-1a]
gi|256269702|gb|EEU04973.1| Dbp10p [Saccharomyces cerevisiae JAY291]
Length = 995
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 118/158 (74%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N +K K G F SFGL VL + ++G++ PTPIQRKTIPL+L+ RD+V MARTGSG
Sbjct: 127 NNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSG 186
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++PM+EKLK+H+ G RA+ILSP+RELA+QTF K+ + T+L+S L GGDS
Sbjct: 187 KTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDS 246
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++ QF + +PD+++ATPGRFLH+ VEM L L S++Y
Sbjct: 247 LEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEY 284
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 153 KRKGFRQPTPIQRK-------TIPLILQSRDIVGMARTGSGKTAAFIL 193
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 245 QLSLTD-FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV--QVTDDTIPLVLE- 300
QL +T+ F D ++ A DL D +HKQ +V KWD +KKYV Q D+ ++ E
Sbjct: 803 QLQITNGFANDAAQAAYDLNSDDKVQVHKQTATV-KWDKKRKKYVNTQGIDNKKYIIGES 861
Query: 301 GRDVVAMARTG 311
G+ + A R+G
Sbjct: 862 GQKIAASFRSG 872
>gi|440637343|gb|ELR07262.1| ATP-dependent RNA helicase dbp10 [Geomyces destructans 20631-21]
Length = 928
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 96/165 (58%), Positives = 126/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
+SN + N K K GGGFQ+ GL +LK + ++G+ +PTPIQRK IPL+L+ +DVV
Sbjct: 73 ASNRKSSNVKGKSVKKGGGFQAMGLNSHLLKAIGRKGFSVPTPIQRKAIPLILDSQDVVG 132
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK H+A G RALILSP+RELALQT + VK+ G+ T L+
Sbjct: 133 MARTGSGKTAAFVIPMIEKLKAHSAKVGARALILSPSRELALQTLQVVKQFGRGTDLKCV 192
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + ++PDIV+ATPGRFLH+ VEM L LSS++Y
Sbjct: 193 LLVGGDSLEEQFGFMASNPDIVIATPGRFLHLKVEMGLDLSSMKY 237
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 166 GRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVA 225
R L + EL L ++Q VK+ G+ T L+ L+GGDS++ QF + ++PDIV+A
Sbjct: 161 ARALILSPSRELALQTLQ----VVKQFGRGTDLKCVLLVGGDSLEEQFGFMASNPDIVIA 216
Query: 226 TPGRFLHIVVEMELKLSSIQLSLTD 250
TPGRFLH+ VEM L LSS++ + D
Sbjct: 217 TPGRFLHLKVEMGLDLSSMKYVVFD 241
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IPL+L+ +DVV MARTGSGKTA F+
Sbjct: 120 AIPLILDSQDVVGMARTGSGKTAAFVI 146
>gi|330443505|ref|NP_010253.2| Dbp10p [Saccharomyces cerevisiae S288c]
gi|341940422|sp|Q12389.2|DBP10_YEAST RecName: Full=ATP-dependent RNA helicase DBP10; AltName: Full=DEAD
box protein 10
gi|329138871|tpg|DAA11821.2| TPA: Dbp10p [Saccharomyces cerevisiae S288c]
gi|392300086|gb|EIW11177.1| Dbp10p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 995
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 118/158 (74%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N +K K G F SFGL VL + ++G++ PTPIQRKTIPL+L+ RD+V MARTGSG
Sbjct: 127 NNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSG 186
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++PM+EKLK+H+ G RA+ILSP+RELA+QTF K+ + T+L+S L GGDS
Sbjct: 187 KTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDS 246
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++ QF + +PD+++ATPGRFLH+ VEM L L S++Y
Sbjct: 247 LEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEY 284
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 153 KRKGFRQPTPIQRK-------TIPLILQSRDIVGMARTGSGKTAAFIL 193
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 245 QLSLTD-FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV--QVTDDTIPLVLE- 300
QL +T+ F D ++ A DL D +HKQ +V KWD +KKYV Q D+ ++ E
Sbjct: 803 QLQITNGFANDAAQAAYDLNSDDKVQVHKQTATV-KWDKKRKKYVNTQGIDNKKYIIGES 861
Query: 301 GRDVVAMARTG 311
G+ + A R+G
Sbjct: 862 GQKIAASFRSG 872
>gi|401626375|gb|EJS44323.1| dbp10p [Saccharomyces arboricola H-6]
Length = 1001
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 130/190 (68%), Gaps = 21/190 (11%)
Query: 15 PTVTISSNDDNGNTG--------------------DKKKKMGGGFQSFGLGFEVLKGVLK 54
PT+ +S +D+NG +G +K K G F SFGL VL + +
Sbjct: 102 PTLELS-DDENGASGKTEEIDDEDDVNEYFSTTNLEKTKHKKGSFPSFGLSKIVLNNIKR 160
Query: 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114
+G++ PTPIQRKTIPL+L+ RD+V MARTGSGKTA F++PM+EKLK H+ G RA+ILS
Sbjct: 161 KGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKGHSGKIGARAVILS 220
Query: 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 174
P+RELA+QTF K+ K T+L+S L GGDS++ QF+ + ++PD+++ATPGRFLH+ VE
Sbjct: 221 PSRELAMQTFNVFKDFAKGTELRSVLLTGGDSLEEQFSMMMSNPDVIIATPGRFLHLKVE 280
Query: 175 MELKLSSIQY 184
M L L S++Y
Sbjct: 281 MNLDLKSVEY 290
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 159 KRKGFRQPTPIQRK-------TIPLILQSRDIVGMARTGSGKTAAFIL 199
>gi|367006623|ref|XP_003688042.1| hypothetical protein TPHA_0M00330 [Tetrapisispora phaffii CBS 4417]
gi|357526349|emb|CCE65608.1| hypothetical protein TPHA_0M00330 [Tetrapisispora phaffii CBS 4417]
Length = 981
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/184 (50%), Positives = 130/184 (70%), Gaps = 4/184 (2%)
Query: 5 DPEDIEGFEDPTVTISSNDDNG----NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIP 60
D ED + ++ ++D N N DK K G F SFGL +L + K+G++ P
Sbjct: 88 DDEDDKNSKNSAFNDDADDVNDYFSTNMQDKSKHKKGSFPSFGLSKLILSNINKKGFRQP 147
Query: 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120
TPIQRKTIPL+L+ RD+V MARTGSGKTA F++PM+EKLKTH+ G RA+ILSP+RELA
Sbjct: 148 TPIQRKTIPLILQRRDIVGMARTGSGKTAAFILPMIEKLKTHSGKIGARAVILSPSRELA 207
Query: 121 LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 180
+QT K K+ + ++L+S L GGDS++ QF+ + ++PD++VATPGRF+H+ VEM L L
Sbjct: 208 MQTHKVFKDFSRGSQLRSVLLTGGDSLEEQFSMMMSNPDVIVATPGRFMHLKVEMGLDLK 267
Query: 181 SIQY 184
+++Y
Sbjct: 268 TVEY 271
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 154 TIPLILQRRDIVGMARTGSGKTAAFIL 180
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 245 QLSLTD-FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYVQVT--DDTIPLVLEG 301
QL+LT F D ++ A DL D +HKQ ++ KWD +KKYV + D+ ++ EG
Sbjct: 790 QLNLTSGFTNDAAQAAYDLNNDDKVQVHKQTANI-KWDKGRKKYVNINGLDNKKYIIGEG 848
>gi|410730255|ref|XP_003671307.2| hypothetical protein NDAI_0G02870 [Naumovozyma dairenensis CBS 421]
gi|401780125|emb|CCD26064.2| hypothetical protein NDAI_0G02870 [Naumovozyma dairenensis CBS 421]
Length = 991
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 117/156 (75%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+K K G F SFGL ++ + KRG++ PTPIQRKTIPL+L+ RD+V MARTGSGKTA
Sbjct: 123 EKSKHKKGSFPSFGLSKIIVTNITKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTA 182
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
F++PM+ K+KTH++ G RA+ILSP+RELA+QT KE K T+L+S L GGDS+++
Sbjct: 183 AFILPMIRKIKTHSSKIGARAVILSPSRELAMQTHNVFKEFSKGTQLRSVLLTGGDSLED 242
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
QF + +PD+++ATPGRFLH+ VEM L L SI+Y
Sbjct: 243 QFGMMMNNPDVIIATPGRFLHLKVEMSLDLKSIEYA 278
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 160 TIPLILQNRDIVGMARTGSGKTAAFIL 186
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 245 QLSLTD-FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV--QVTDDTIPLVLE- 300
QL LT F D +++A DL D +HKQ V KWD +KKYV Q D+ ++ E
Sbjct: 798 QLELTTGFVNDAAKVAYDLNNDDKVQVHKQTAMV-KWDKKRKKYVNTQGLDNKKYIIGEG 856
Query: 301 GRDVVAMARTG 311
G+ + A R+G
Sbjct: 857 GQKIAASFRSG 867
>gi|255726598|ref|XP_002548225.1| hypothetical protein CTRG_02522 [Candida tropicalis MYA-3404]
gi|240134149|gb|EER33704.1| hypothetical protein CTRG_02522 [Candida tropicalis MYA-3404]
Length = 929
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 90/158 (56%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N KK G F SFGL +L + K+GYK PTPIQRKTIPL++EGRDVV MARTGSG
Sbjct: 101 NNPTAKKAKAGSFASFGLTKFILTNIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSG 160
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++P++E+LK+ T+GVRA+I+SP+RELALQT+K VKE T L+S L+GGDS
Sbjct: 161 KTAAFVLPLIEQLKSRQ-TNGVRAIIISPSRELALQTYKQVKEFSNGTNLKSIVLIGGDS 219
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++ F+++ PD++V TPGRFLH+ VEME L +++Y
Sbjct: 220 LEEDFSKMMTKPDVIVCTPGRFLHLKVEMEYDLKTVRY 257
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLF 320
AKK Y Q T TIPL++EGRDVV MARTGSGKTA F+
Sbjct: 127 AKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVL 167
>gi|365766492|gb|EHN07988.1| Dbp10p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 899
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 118/158 (74%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N +K K G F SFGL VL + ++G++ PTPIQRKTIPL+L+ RD+V MARTGSG
Sbjct: 31 NNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSG 90
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++PM+EKLK+H+ G RA+ILSP+RELA+QTF K+ + T+L+S L GGDS
Sbjct: 91 KTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDS 150
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++ QF + +PD+++ATPGRFLH+ VEM L L S++Y
Sbjct: 151 LEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEY 188
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 57 KRKGFRQPTPIQRK-------TIPLILQSRDIVGMARTGSGKTAAFIL 97
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 245 QLSLTD-FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV--QVTDDTIPLVLE- 300
QL +T+ F D ++ A DL D +HKQ +V KWD +KKYV Q D+ ++ E
Sbjct: 707 QLQITNGFANDAAQAAYDLNSDDKVQVHKQTATV-KWDKKRKKYVNTQGIDNKKYIIGES 765
Query: 301 GRDVVAMARTG 311
G+ + A R+G
Sbjct: 766 GQKIAASFRSG 776
>gi|224085049|ref|XP_002307470.1| predicted protein [Populus trichocarpa]
gi|222856919|gb|EEE94466.1| predicted protein [Populus trichocarpa]
Length = 510
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/148 (60%), Positives = 118/148 (79%), Gaps = 1/148 (0%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF+S L V +G+ ++GY++PTPIQRKT+PL+L G DVVAMARTGSGKTA FL+PMLE
Sbjct: 26 GFESLNLSPNVFRGIKRKGYRVPTPIQRKTMPLILAGIDVVAMARTGSGKTAAFLLPMLE 85
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
KLK H SGVRALILSPTR+LALQT KF KELG+FT L+ + L+GGD M++QF L +
Sbjct: 86 KLKQHLPQSGVRALILSPTRDLALQTLKFTKELGRFTDLRISLLVGGDRMESQFEDLSQN 145
Query: 158 PDIVVATPGRFLHIVVEM-ELKLSSIQY 184
PDI++ATPGR +H + E+ ++ L +++Y
Sbjct: 146 PDIIIATPGRLMHHLSEIDDMSLKTVEY 173
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSS 243
T KF KELG+FT L+ + L+GGD M++QF L +PDI++ATPGR +H + E+ ++ L +
Sbjct: 111 TLKFTKELGRFTDLRISLLVGGDRMESQFEDLSQNPDIIIATPGRLMHHLSEIDDMSLKT 170
Query: 244 IQLSLTD 250
++ + D
Sbjct: 171 VEYVVFD 177
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+R+ R P ++K T+PL+L G DVVAMARTGSGKTA FL
Sbjct: 41 KRKGYRVPTPIQRK-------TMPLILAGIDVVAMARTGSGKTAAFLL 81
>gi|323338349|gb|EGA79576.1| Dbp10p [Saccharomyces cerevisiae Vin13]
Length = 581
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 118/158 (74%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
N +K K G F SFGL VL + ++G++ PTPIQRKTIPL+L+ RD+V MARTGSG
Sbjct: 31 NNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSG 90
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F++PM+EKLK+H+ G RA+ILSP+RELA+QTF K+ + T+L+S L GGDS
Sbjct: 91 KTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDS 150
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++ QF + +PD+++ATPGRFLH+ VEM L L S++Y
Sbjct: 151 LEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEY 188
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 57 KRKGFRQPTPIQRK-------TIPLILQSRDIVGMARTGSGKTAAFIL 97
>gi|66800711|ref|XP_629281.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
gi|74996456|sp|Q54CD8.1|DDX54_DICDI RecName: Full=ATP-dependent RNA helicase ddx54; AltName:
Full=ATP-dependent RNA helicase helA; AltName: Full=DEAD
box protein 54
gi|60462646|gb|EAL60848.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
Length = 1091
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 117/148 (79%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGFQS L +LK +LK+G+ +PTPIQRK+IP++L+G D+V MARTGSGKT F+IPM+
Sbjct: 230 GGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMI 289
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
+KL H+ T GVRA+ILSPTRELA+QTFK VK+ + T+L++ ++GGDSM++QF L
Sbjct: 290 QKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLAR 349
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY 184
+PDI++ATPGR +H ++E + LS +QY
Sbjct: 350 NPDIIIATPGRLMHHLLETGMSLSKVQY 377
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
+IP++L+G D+V MARTGSGKT F+
Sbjct: 260 SIPMILDGHDIVGMARTGSGKTGAFV 285
>gi|156049231|ref|XP_001590582.1| hypothetical protein SS1G_08322 [Sclerotinia sclerotiorum 1980]
gi|154692721|gb|EDN92459.1| hypothetical protein SS1G_08322 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 828
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 113/143 (79%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV MARTGSGKTA F+IPM+EKL+
Sbjct: 1 MGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIPMIEKLRA 60
Query: 102 HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIV 161
H+ G RALI+SP+RELALQT K VKE G+ T L+ L+GGDS++ QF + A+PDIV
Sbjct: 61 HSVRVGARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSLEEQFGFMAANPDIV 120
Query: 162 VATPGRFLHIVVEMELKLSSIQY 184
+ATPGRFLH+ VEM L LSS++Y
Sbjct: 121 IATPGRFLHLKVEMSLDLSSMKY 143
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPLVL+ +DVV MARTGSGKTA F+
Sbjct: 26 TIPLVLDNQDVVGMARTGSGKTAAFVI 52
>gi|348685911|gb|EGZ25726.1| hypothetical protein PHYSODRAFT_486355 [Phytophthora sojae]
Length = 852
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/165 (55%), Positives = 120/165 (72%), Gaps = 4/165 (2%)
Query: 24 DNGNTGDKKKKMG---GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAM 80
D G T K G GGFQ GL V +GV+ GYK+PTPIQRK++P+VL G+D VAM
Sbjct: 20 DGGTTHGKSSGKGAGVGGFQHLGLSPPVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAM 79
Query: 81 ARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTC 140
ARTGSGKTA FLIPMLEKLK H+ GVRA++LSPTRELA+QT +F K+L KFT L+
Sbjct: 80 ARTGSGKTAAFLIPMLEKLKEHSTKIGVRAVVLSPTRELAVQTLRFAKQLSKFTSLKMAL 139
Query: 141 LLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
++GG+ MD QF + A+PD++VATPGR +H + E+ + L +++Y
Sbjct: 140 IVGGEGMDQQFEAIAANPDVLVATPGRLMHHLQEIPDFNLKAVEY 184
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
++P+VL G+D VAMARTGSGKTA FL
Sbjct: 66 SLPIVLSGKDCVAMARTGSGKTAAFLI 92
>gi|342180685|emb|CCC90161.1| putative ATP-dependent DEAD/H RNA helicase [Trypanosoma congolense
IL3000]
Length = 842
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/153 (60%), Positives = 117/153 (76%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
+KKK GGGFQ+FGL +L VL+ GY +PTPIQRK IP +++G DVVAMARTGSGKTA
Sbjct: 19 QKKKRGGGFQTFGLDKPLLDSVLRLGYNVPTPIQRKAIPPMIQGNDVVAMARTGSGKTAA 78
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
FLIPML LKTH+ GVR L+LSPTREL++Q +F +LGKF L+ L+GG+S++ Q
Sbjct: 79 FLIPMLHMLKTHSKVVGVRGLVLSPTRELSMQILRFGIQLGKFLDLRFVALVGGNSLEQQ 138
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
F L ++PDIVVATPGR LHI+ E L+LS ++
Sbjct: 139 FEMLASNPDIVVATPGRILHIMEEASLQLSMVK 171
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +++G DVVAMARTGSGKTA FL
Sbjct: 55 AIPPMIQGNDVVAMARTGSGKTAAFLI 81
>gi|448522708|ref|XP_003868758.1| Dbp10 protein [Candida orthopsilosis Co 90-125]
gi|380353098|emb|CCG25854.1| Dbp10 protein [Candida orthopsilosis]
Length = 912
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
N KK G F SFG +L + K+GYK PTPIQRK+IPL++ RDVV MARTGS
Sbjct: 83 ANNPTAKKAKAGSFASFGFSKFLLSNISKKGYKQPTPIQRKSIPLIINNRDVVGMARTGS 142
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA F++P++EKLK+ T GVRA+ILSP+RELALQT+K VKE + T LQS L+GGD
Sbjct: 143 GKTAAFVLPLIEKLKSRRPT-GVRAVILSPSRELALQTYKQVKEFSRGTDLQSIVLIGGD 201
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
S++ F ++ + PD++V TPGRFLH+ VEM+ LS++QY
Sbjct: 202 SLEEDFGKMVSKPDVIVCTPGRFLHLKVEMQYDLSTVQY 240
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLF 320
+KK Y Q T +IPL++ RDVV MARTGSGKTA F+
Sbjct: 110 SKKGYKQPTPIQRKSIPLIINNRDVVGMARTGSGKTAAFVL 150
>gi|71649079|ref|XP_813297.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70878168|gb|EAN91446.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 903
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 116/152 (76%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
KKK GGGFQSFGL VL GVL+ GY +PTPIQRK IP + +G DVVAMARTGSGKTA F
Sbjct: 102 KKKRGGGFQSFGLDKPVLDGVLRLGYNVPTPIQRKAIPPMTQGSDVVAMARTGSGKTAAF 161
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
LIPML LK+H+ T G+R L+L+PTREL+LQ +F +L KF L+ L+GG+S++ QF
Sbjct: 162 LIPMLNLLKSHSKTVGIRGLVLAPTRELSLQILRFGIQLNKFLDLRFAALVGGNSLEQQF 221
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L ++PDIVVATPGR LHI+ E LKLS ++
Sbjct: 222 ELLGSNPDIVVATPGRLLHIMEEASLKLSMVK 253
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
IP + +G DVVAMARTGSGKTA FL
Sbjct: 137 AIPPMTQGSDVVAMARTGSGKTAAFL 162
>gi|255072735|ref|XP_002500042.1| predicted protein [Micromonas sp. RCC299]
gi|226515304|gb|ACO61300.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 523
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 151/245 (61%), Gaps = 29/245 (11%)
Query: 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKT 88
+K K GGGF+S + EV + + ++GY+IPTPIQRK IP+ L G DVVAMARTGSGKT
Sbjct: 63 AEKAKSKGGGFESMDILPEVFRAIKRKGYRIPTPIQRKAIPVALSGADVVAMARTGSGKT 122
Query: 89 ACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD 148
A FLIP+L KL+ H+ +G RA++LSPTRELALQT+KF +EL KFT L+ C++GGDSM+
Sbjct: 123 AAFLIPVLHKLRQHSLKAGARAVVLSPTRELALQTYKFAQELSKFTDLRCVCVVGGDSME 182
Query: 149 NQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQYT----------FKFVKELGKFTK 197
QF L ++PD++VATPGR LH V E+ + S+ + F +L K
Sbjct: 183 AQFDDLASNPDLLVATPGRLLHHVEEISGFSIRSVSHVVLDEADRLLEMGFADQLRDIMK 242
Query: 198 L---QSTCLLGGDSMDN---QFARLH-ASPDIVVATPGRFLHIVVEMELKLS-SIQLSLT 249
Q CLL +M + +F R+ P + I ++ E+K+S ++LS T
Sbjct: 243 QVADQRQCLLFSATMPSALAEFVRVGLKDPQV----------IRLDAEMKVSPDLKLSFT 292
Query: 250 DFKQD 254
+QD
Sbjct: 293 VMRQD 297
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+R+ R P ++K IP+ L G DVVAMARTGSGKTA FL
Sbjct: 87 KRKGYRIPTPIQRK-------AIPVALSGADVVAMARTGSGKTAAFLI 127
>gi|357630995|gb|EHJ78746.1| hypothetical protein KGM_20929 [Danaus plexippus]
Length = 706
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/147 (63%), Positives = 115/147 (78%), Gaps = 5/147 (3%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
G F +LKG+ KRGYK PTPIQRKTIP+ L+ +DVVAMARTGSGKTACF++P+LEKL +
Sbjct: 1 MGFNFPILKGITKRGYKQPTPIQRKTIPIALDNKDVVAMARTGSGKTACFVLPILEKLMS 60
Query: 102 HAAT----SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-A 156
+RALILSPTRELALQT +FV+ELGKFT L S +LGG+S++ QF + +
Sbjct: 61 PGNKPLHGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFGVMSGS 120
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
SPDIVVATPGRFLHI +EM LKL +I+
Sbjct: 121 SPDIVVATPGRFLHICIEMSLKLDNIK 147
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
Query: 284 KKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLF 320
K+ Y Q T TIP+ L+ +DVVAMARTGSGKTACF+
Sbjct: 13 KRGYKQPTPIQRKTIPIALDNKDVVAMARTGSGKTACFVL 52
>gi|71651136|ref|XP_814251.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70879209|gb|EAN92400.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 861
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 116/152 (76%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
KKK GGGFQS GL VL GVL+ GY +PTPIQRK IP +++G DVVAMARTGSGKTA F
Sbjct: 60 KKKRGGGFQSLGLEKPVLDGVLRLGYNVPTPIQRKAIPPMIQGSDVVAMARTGSGKTAAF 119
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
L+PML LK+H+ T G+R L+L+PTREL+LQ +F +L KF L+ L+GG+S++ QF
Sbjct: 120 LVPMLNLLKSHSKTVGIRGLVLAPTRELSLQILRFGIQLNKFLDLRFAALVGGNSLEQQF 179
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L ++PDIVVATPGR LHI+ E LKLS ++
Sbjct: 180 ELLGSNPDIVVATPGRLLHIMEEASLKLSMVK 211
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 22/26 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
IP +++G DVVAMARTGSGKTA FL
Sbjct: 95 AIPPMIQGSDVVAMARTGSGKTAAFL 120
>gi|384252494|gb|EIE25970.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 806
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 124/157 (78%), Gaps = 2/157 (1%)
Query: 30 DKKKKMG-GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKT 88
DK+KK+ G F++ GL +++G+ ++GY++PTPIQR+T+PL L G+DVV MARTGSGKT
Sbjct: 36 DKRKKLKPGSFETLGLSPVIIRGIKRKGYQLPTPIQRRTLPLALTGQDVVGMARTGSGKT 95
Query: 89 ACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD 148
A F+IPMLE+L+ H+ +G RALIL+PTREL LQ K VKEL ++T L++ L+GGDSM+
Sbjct: 96 AAFVIPMLERLREHSPRAGARALILAPTRELTLQLHKVVKELSRYTDLRTAVLVGGDSME 155
Query: 149 NQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQY 184
QFA L A+PDI++ATPGR +H + E+E + L ++QY
Sbjct: 156 AQFAELAANPDILLATPGRLMHHLQEVEGMSLQTVQY 192
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 187 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQ 245
K VKEL ++T L++ L+GGDSM+ QFA L A+PDI++ATPGR +H + E+E + L ++Q
Sbjct: 132 KVVKELSRYTDLRTAVLVGGDSMEAQFAELAANPDILLATPGRLMHHLQEVEGMSLQTVQ 191
Query: 246 LSLTD 250
+ D
Sbjct: 192 YCVFD 196
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
T+PL L G+DVV MARTGSGKTA F+ R
Sbjct: 74 TLPLALTGQDVVGMARTGSGKTAAFVIPMLERL 106
>gi|354548000|emb|CCE44735.1| hypothetical protein CPAR2_405390 [Candida parapsilosis]
Length = 914
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGS 85
N KK G F SFG +L + K+GYK PTPIQRK+IPL+++ RDVV MARTGS
Sbjct: 81 SNNPTAKKAKAGSFASFGFSKFLLSNISKKGYKQPTPIQRKSIPLIIDNRDVVGMARTGS 140
Query: 86 GKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
GKTA F++P++EKLK+ T GVRA+ILSP+RELALQT+K VKE + T LQS L+GGD
Sbjct: 141 GKTAAFVLPLIEKLKSRRPT-GVRAVILSPSRELALQTYKQVKEFSRGTDLQSIVLIGGD 199
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
S++ F ++ PDI+V TPGRFLH+ VEM+ LS+++Y
Sbjct: 200 SLEEDFGKMVTKPDIIVCTPGRFLHLKVEMQYDLSTVEY 238
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLF 320
+KK Y Q T +IPL+++ RDVV MARTGSGKTA F+
Sbjct: 108 SKKGYKQPTPIQRKSIPLIIDNRDVVGMARTGSGKTAAFVL 148
>gi|367013516|ref|XP_003681258.1| hypothetical protein TDEL_0D04630 [Torulaspora delbrueckii]
gi|359748918|emb|CCE92047.1| hypothetical protein TDEL_0D04630 [Torulaspora delbrueckii]
Length = 968
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 116/154 (75%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
KK G F SFGL +L + ++G+ PTPIQRKTIPL+L+ RD+V +ARTGSGKTA F
Sbjct: 109 KKHKKGSFPSFGLSKLILNNISRKGFHQPTPIQRKTIPLILQSRDIVGLARTGSGKTAAF 168
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
++PM+EKLK+H++ G RA+ILSP+RELA+QT K K+ + T L+S L GGDS++ QF
Sbjct: 169 ILPMIEKLKSHSSKVGARAVILSPSRELAMQTHKVFKDFSRGTHLRSVLLTGGDSLEEQF 228
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
+ ++PD++VATPGRFLH+ VEM L L SI+Y
Sbjct: 229 GMMMSNPDVIVATPGRFLHLKVEMNLDLKSIEYA 262
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+L+ RD+V +ARTGSGKTA F+
Sbjct: 144 TIPLILQSRDIVGLARTGSGKTAAFIL 170
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 241 LSSIQLSLTD-FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV--QVTDDTIPL 297
L +L+LT F D ++ A D+ GD +HKQ +V KWD KKKY+ Q D+ +
Sbjct: 771 LHENELNLTSGFTTDAAQAACDINGDDKVQVHKQNATV-KWDSKKKKYINSQGADNKKYI 829
Query: 298 VLE-GRDVVAMARTG 311
V E G+ + A R+G
Sbjct: 830 VGESGQKIPASFRSG 844
>gi|374107994|gb|AEY96901.1| FAEL086Wp [Ashbya gossypii FDAG1]
Length = 960
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/185 (49%), Positives = 127/185 (68%), Gaps = 16/185 (8%)
Query: 15 PTVTISSNDDNGNTGDK---------------KKKMGGGFQSFGLGFEVLKGVLKRGYKI 59
P++ +S +D N GDK K G F SFGL +L + ++G++
Sbjct: 84 PSLELSDGEDADN-GDKDDVDSYFNTTSQLAASKAKKGSFASFGLSKFILGNISRKGFRQ 142
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
PTPIQRKTIPL+L+ RD+V MARTGSGKTA F++P++EKLK H+A G RA+ILSP+REL
Sbjct: 143 PTPIQRKTIPLILQQRDIVGMARTGSGKTAAFVLPLIEKLKMHSAKIGARAMILSPSREL 202
Query: 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
A+QT K KE K + L+S L GGD +++QF+ + ++PD+++ATPGRFLH+ VEM L L
Sbjct: 203 AMQTHKVFKEFAKGSNLRSVLLTGGDGLEDQFSMMMSNPDVIIATPGRFLHLKVEMNLDL 262
Query: 180 SSIQY 184
SI+Y
Sbjct: 263 HSIEY 267
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Query: 274 RQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 137 RKGFRQPTPIQRK-------TIPLILQQRDIVGMARTGSGKTAAFVL 176
>gi|45190521|ref|NP_984775.1| AEL086Wp [Ashbya gossypii ATCC 10895]
gi|74693722|sp|Q757U8.1|DBP10_ASHGO RecName: Full=ATP-dependent RNA helicase DBP10
gi|44983463|gb|AAS52599.1| AEL086Wp [Ashbya gossypii ATCC 10895]
Length = 960
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/185 (49%), Positives = 127/185 (68%), Gaps = 16/185 (8%)
Query: 15 PTVTISSNDDNGNTGDK---------------KKKMGGGFQSFGLGFEVLKGVLKRGYKI 59
P++ +S +D N GDK K G F SFGL +L + ++G++
Sbjct: 84 PSLELSDGEDADN-GDKDDVDSYFNTTSQLAASKAKKGSFASFGLSKFILGNISRKGFRQ 142
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
PTPIQRKTIPL+L+ RD+V MARTGSGKTA F++P++EKLK H+A G RA+ILSP+REL
Sbjct: 143 PTPIQRKTIPLILQQRDIVGMARTGSGKTAAFVLPLIEKLKMHSAKIGARAMILSPSREL 202
Query: 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
A+QT K KE K + L+S L GGD +++QF+ + ++PD+++ATPGRFLH+ VEM L L
Sbjct: 203 AMQTHKVFKEFAKGSNLRSVLLTGGDGLEDQFSMMMSNPDVIIATPGRFLHLKVEMNLDL 262
Query: 180 SSIQY 184
SI+Y
Sbjct: 263 HSIEY 267
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Query: 274 RQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 137 RKGFRQPTPIQRK-------TIPLILQQRDIVGMARTGSGKTAAFVL 176
>gi|145348205|ref|XP_001418546.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578775|gb|ABO96839.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 546
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 111/140 (79%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGF+S + +V + V ++GY++PTPIQRK IP LEGRDVVAMARTGSGKTA FLIP+L
Sbjct: 85 GGFESMDILPDVFRAVKRKGYRVPTPIQRKAIPPALEGRDVVAMARTGSGKTAAFLIPVL 144
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
KL+TH+ +G R +IL+PTRELALQTFKF KEL KFT L+ L+GGDSM+ QFA L
Sbjct: 145 SKLRTHSLKAGARCVILAPTRELALQTFKFAKELAKFTDLRVAALVGGDSMEAQFADLSN 204
Query: 157 SPDIVVATPGRFLHIVVEME 176
+PD++VATPGR LH + E++
Sbjct: 205 NPDVIVATPGRLLHHIDEVK 224
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+R+ R P ++K IP LEGRDVVAMARTGSGKTA FL
Sbjct: 101 KRKGYRVPTPIQRK-------AIPPALEGRDVVAMARTGSGKTAAFLI 141
>gi|301111750|ref|XP_002904954.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095284|gb|EEY53336.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 847
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/149 (56%), Positives = 116/149 (77%), Gaps = 1/149 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGFQ GL V +GV+ GYK+PTPIQRK++P+VL G+D VAMARTGSGKTA FL+PM+
Sbjct: 36 GGFQHLGLSPLVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLVPMV 95
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
EKLK H+ GVRA++LSPTRELA+QT +F K+L KFT L+ ++GG+ MD QF + +
Sbjct: 96 EKLKEHSTKIGVRAVVLSPTRELAVQTLRFAKQLSKFTSLKMALIVGGEGMDQQFEAIAS 155
Query: 157 SPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
+PD++VATPGR +H++ E+ + L +++Y
Sbjct: 156 NPDVLVATPGRLMHLLQEIPDFNLKAVEY 184
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
++P+VL G+D VAMARTGSGKTA FL
Sbjct: 66 SLPIVLSGKDCVAMARTGSGKTAAFL 91
>gi|149241448|ref|XP_001526316.1| hypothetical protein LELG_02874 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013474|sp|A5DZT7.1|DBP10_LODEL RecName: Full=ATP-dependent RNA helicase DBP10
gi|146450439|gb|EDK44695.1| hypothetical protein LELG_02874 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 948
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
KK G F SFG +L + K+GYK PTPIQR++IPL+++ RDVV MARTGSGKTA F
Sbjct: 116 KKAKAGSFASFGFSKFLLANIAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAF 175
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
++P++EKLK + SGVRA+ILSP+RELALQT+K VKE T LQS L+GGDS++ F
Sbjct: 176 VLPLIEKLKLRSP-SGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDF 234
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++ PDI+V TPGRFLH+ VEM+ L S+QY
Sbjct: 235 GKMMTKPDIIVCTPGRFLHLKVEMQYDLMSVQY 267
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLF 320
AKK Y Q T +IPL+++ RDVV MARTGSGKTA F+
Sbjct: 137 AKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVL 177
>gi|328865714|gb|EGG14100.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 1076
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/155 (56%), Positives = 117/155 (75%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
D++KK GGFQ L + K V+K+G+K PTPIQR TIPL+LEG+DVV MARTGSGKTA
Sbjct: 261 DERKKKMGGFQGMDLHKFLFKAVMKKGFKQPTPIQRLTIPLILEGQDVVGMARTGSGKTA 320
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
F+IPM++KL H+ G RA+ILSPTRELALQT++ VKEL + L+S ++GGD+M +
Sbjct: 321 AFVIPMIQKLAQHSHKVGARAIILSPTRELALQTYRVVKELSSGSDLRSCVIVGGDNMAD 380
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QF L +PDI++ATPGR +H + E+ + L ++QY
Sbjct: 381 QFTELARNPDIIIATPGRLVHHLTEVNMGLHTVQY 415
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+LEG+DVV MARTGSGKTA F+
Sbjct: 298 TIPLILEGQDVVGMARTGSGKTAAFVI 324
>gi|154336403|ref|XP_001564437.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061472|emb|CAM38500.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 803
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/157 (57%), Positives = 114/157 (72%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
+ K KK GGGFQSFGL +L +LK+G+ +PTPIQRK IP +L+G DVVAMARTGSG
Sbjct: 12 QSAAKSKKKGGGFQSFGLDKPLLDAILKKGFSVPTPIQRKAIPPMLQGNDVVAMARTGSG 71
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA FLIPML LK H+ G+R L+LSPTREL+LQT L +F L+ L+GGDS
Sbjct: 72 KTAAFLIPMLNALKAHSKVVGIRGLVLSPTRELSLQTLHNGFALNRFLDLRFAALVGGDS 131
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ QF L ++PD+VVATPGR LHI+ E L L+S++
Sbjct: 132 MEQQFELLASNPDVVVATPGRLLHIMEEASLHLTSVR 168
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +L+G DVVAMARTGSGKTA FL
Sbjct: 52 AIPPMLQGNDVVAMARTGSGKTAAFLI 78
>gi|255712653|ref|XP_002552609.1| KLTH0C08866p [Lachancea thermotolerans]
gi|238933988|emb|CAR22171.1| KLTH0C08866p [Lachancea thermotolerans CBS 6340]
Length = 972
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 125/185 (67%), Gaps = 15/185 (8%)
Query: 15 PTVTISSNDDNG---------------NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKI 59
P + +S N+D+ N + K G F SFGL ++ + K+G++
Sbjct: 85 PALELSDNEDHDDGKDGADDVTEYFSTNNPEAAKHKKGSFASFGLSKFIVSNIAKKGFRQ 144
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
PTPIQRKTIPL+L+ RD+V MARTGSGKTA F++PM+EKLK H+A G RA+ILSP+REL
Sbjct: 145 PTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKGHSAKIGARAVILSPSREL 204
Query: 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
A+QT K +E + + L+S L GG+S++ QF + ++PD+V+ATPGRFLH+ VEM L L
Sbjct: 205 AMQTHKVFREFSRGSDLRSVLLTGGESLEEQFGLMMSNPDVVIATPGRFLHLKVEMNLDL 264
Query: 180 SSIQY 184
S++Y
Sbjct: 265 KSVEY 269
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLF 320
AKK + Q T TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 138 AKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVL 178
>gi|357474503|ref|XP_003607536.1| hypothetical protein MTR_4g079320 [Medicago truncatula]
gi|355508591|gb|AES89733.1| hypothetical protein MTR_4g079320 [Medicago truncatula]
Length = 787
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 113/148 (76%), Gaps = 1/148 (0%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF++ GL +V G+ ++GYK+PTPIQRKT+PL+L G DVVAMARTGSGKTA FL+PML
Sbjct: 19 GFETLGLNRDVFSGIKRKGYKVPTPIQRKTMPLILSGIDVVAMARTGSGKTAAFLVPMLH 78
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
+L H GVR LILSPTR+LA QT KF KELG FT L+ + L+GGDSM++QF L +
Sbjct: 79 RLNQHVPQGGVRGLILSPTRDLAQQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQN 138
Query: 158 PDIVVATPGRFLHIVVEM-ELKLSSIQY 184
PDI++ATPGR +H + E+ ++ L ++Y
Sbjct: 139 PDIIIATPGRLMHHLSEVDDMSLRKVEY 166
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 183 QYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 238
Q T KF KELG FT L+ + L+GGDSM++QF L +PDI++ATPGR +H + E++
Sbjct: 102 QQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVD 157
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
T+PL+L G DVVAMARTGSGKTA FL R ++
Sbjct: 48 TMPLILSGIDVVAMARTGSGKTAAFLVPMLHRLNQ 82
>gi|303277179|ref|XP_003057883.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460540|gb|EEH57834.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 532
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 115/149 (77%), Gaps = 1/149 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGF++ L +V + + ++GY+IPTPIQRK IP+ L G DVVAMARTGSGKTA FLIP+L
Sbjct: 80 GGFEAMDLLPDVFRAIKRKGYRIPTPIQRKAIPVALSGADVVAMARTGSGKTAAFLIPVL 139
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
KL+ H+ +G RA++LSPTRELALQTFKF +EL KFT L+ C++GGDSM+ QF L
Sbjct: 140 HKLRAHSLKAGARAIVLSPTRELALQTFKFAQELSKFTDLRCVCIVGGDSMEAQFEDLAT 199
Query: 157 SPDIVVATPGRFLHIVVEME-LKLSSIQY 184
+PD+ VATPGR LH V E++ L + S+Q+
Sbjct: 200 NPDLYVATPGRLLHHVEEIDGLTIRSVQH 228
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 259 ALDLVGDSTEMIHKQRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACF 318
A+DL+ D I +R+ R P ++K IP+ L G DVVAMARTGSGKTA F
Sbjct: 84 AMDLLPDVFRAI--KRKGYRIPTPIQRK-------AIPVALSGADVVAMARTGSGKTAAF 134
Query: 319 LFYFFFRF 326
L +
Sbjct: 135 LIPVLHKL 142
>gi|146099084|ref|XP_001468551.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|134072919|emb|CAM71636.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
Length = 803
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
+ D KKK GGGFQSF L +L +LK+G+ +PTPIQRK IP +L+G DVVAMARTGSG
Sbjct: 13 SAADSKKK-GGGFQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSG 71
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA FLIPML LK HA G+R L+LSPTREL+LQ + L KF L+ L+GGDS
Sbjct: 72 KTAAFLIPMLNTLKAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDS 131
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
MD QF L ++PD+VVATPGR LHI+ E L L+S++
Sbjct: 132 MDQQFELLASNPDVVVATPGRLLHIMEEASLHLTSVR 168
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +L+G DVVAMARTGSGKTA FL
Sbjct: 52 AIPPMLQGNDVVAMARTGSGKTAAFLI 78
>gi|398022356|ref|XP_003864340.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
gi|322502575|emb|CBZ37658.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
Length = 803
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
+ D KKK GGGFQSF L +L +LK+G+ +PTPIQRK IP +L+G DVVAMARTGSG
Sbjct: 13 SAADSKKK-GGGFQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSG 71
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA FLIPML LK HA G+R L+LSPTREL+LQ + L KF L+ L+GGDS
Sbjct: 72 KTAAFLIPMLNTLKAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDS 131
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
MD QF L ++PD+VVATPGR LHI+ E L L+S++
Sbjct: 132 MDQQFELLASNPDVVVATPGRLLHIMEEASLHLTSVR 168
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +L+G DVVAMARTGSGKTA FL
Sbjct: 52 AIPPMLQGNDVVAMARTGSGKTAAFLI 78
>gi|359322902|ref|XP_003433427.2| PREDICTED: ATP-dependent RNA helicase DDX54 [Canis lupus
familiaris]
Length = 789
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 103/117 (88%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
CFLIPM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD+
Sbjct: 149 CFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLRTALILGGDN 205
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP++L+G+DVVAMARTGSGKTACFL F R
Sbjct: 126 TIPVILDGKDVVAMARTGSGKTACFLIPMFERL 158
>gi|157875861|ref|XP_001686302.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
gi|68129376|emb|CAJ07917.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
Length = 803
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
+ D KKK GGGFQSF L +L +LK+G+ +PTPIQRK IP +L+G DVVAMARTGSG
Sbjct: 13 SAADSKKK-GGGFQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSG 71
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA FLIPML LK HA G+R L+LSPTREL+LQ + L KF L+ L+GGDS
Sbjct: 72 KTAAFLIPMLNTLKAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDS 131
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
MD QF L ++PD+VVATPGR LHI+ E L L+S++
Sbjct: 132 MDQQFELLASNPDVVVATPGRLLHIMEEASLHLTSVR 168
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +L+G DVVAMARTGSGKTA FL
Sbjct: 52 AIPPMLQGNDVVAMARTGSGKTAAFLI 78
>gi|159490042|ref|XP_001702998.1| predicted protein [Chlamydomonas reinhardtii]
gi|158270905|gb|EDO96736.1| predicted protein [Chlamydomonas reinhardtii]
Length = 485
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 123/157 (78%), Gaps = 2/157 (1%)
Query: 30 DKKKKM-GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKT 88
++KKKM G F S G +VL+ + ++GY++PTPIQR+ +P++++G DVV MARTGSGKT
Sbjct: 2 EQKKKMKAGTFDSMGFSPDVLRAIKRKGYRLPTPIQRRAMPMIMQGLDVVGMARTGSGKT 61
Query: 89 ACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD 148
A F++PM+ +LK H+ +G RA+ILSPTRELALQT K V++L K+T L++ CL+GGDSM+
Sbjct: 62 AAFVLPMIHRLKEHSIRAGARAVILSPTRELALQTHKTVRDLCKYTSLRTACLVGGDSME 121
Query: 149 NQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQY 184
QFA L A+PD++VATPGR H + E+E L L +++Y
Sbjct: 122 VQFAELAANPDVIVATPGRLAHHLEEVEGLSLRAVEY 158
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+P++++G DVV MARTGSGKTA F+ R
Sbjct: 40 AMPMIMQGLDVVGMARTGSGKTAAFVLPMIHRL 72
>gi|401428549|ref|XP_003878757.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495006|emb|CBZ30309.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 804
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
+ D KKK GGGFQSF L +L +LK+G+ +PTPIQRK IP +L+G DVVAMARTGSG
Sbjct: 13 SVADSKKK-GGGFQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSG 71
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA FLIPML LK H+ G+R L+LSPTREL+LQ + L KF L+ L+GGDS
Sbjct: 72 KTAAFLIPMLNTLKAHSKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDS 131
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
MD QF L ++PDIVVATPGR LHI+ E L L+S++
Sbjct: 132 MDQQFELLASNPDIVVATPGRLLHIMEEASLHLTSVR 168
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +L+G DVVAMARTGSGKTA FL
Sbjct: 52 AIPPMLQGNDVVAMARTGSGKTAAFLI 78
>gi|340053299|emb|CCC47587.1| putative ATP-dependent RNA helicase [Trypanosoma vivax Y486]
Length = 857
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/153 (58%), Positives = 116/153 (75%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
+KKK GGGFQ+ GL +L G+L+ GY +PTPIQRK I +++G DVVAMARTGSGKTA
Sbjct: 18 QKKKRGGGFQTLGLEKPLLDGILRLGYNVPTPIQRKAIHPMMQGNDVVAMARTGSGKTAA 77
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
FLIPML LK+H+ GVR LILSPTREL++Q +F +LGKF L+ L+GG+S++ Q
Sbjct: 78 FLIPMLHLLKSHSKVVGVRGLILSPTRELSMQILRFGIKLGKFLDLRFVALVGGNSLEQQ 137
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
F L ++PDIVVATPGR LHI+ E L+LS ++
Sbjct: 138 FEMLASNPDIVVATPGRILHIMEEASLQLSMVK 170
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
I +++G DVVAMARTGSGKTA FL
Sbjct: 54 AIHPMMQGNDVVAMARTGSGKTAAFLI 80
>gi|242133498|gb|ACS87799.1| putative ATP-dependent RNA helicase [Crithidia sp. ATCC 30255]
Length = 885
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 114/157 (72%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
+ D KKK GGGFQ+FGL +L +LK+G+ +PTPIQRK IP +L+G DVVAMARTGSG
Sbjct: 80 SAADSKKKKGGGFQTFGLDKPLLDAILKQGFTVPTPIQRKAIPPMLQGNDVVAMARTGSG 139
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA FLIPML LK H+ G+R L+LSPTREL+LQ L KF L+ ++GGDS
Sbjct: 140 KTAAFLIPMLYHLKAHSKMVGIRGLVLSPTRELSLQILHNGFALNKFMDLRFAAVVGGDS 199
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+D QF L ++PD+VVATPGR LHI+ E L L++++
Sbjct: 200 LDQQFELLASNPDLVVATPGRLLHIMEEASLHLTAVR 236
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IP +L+G DVVAMARTGSGKTA FL +
Sbjct: 120 AIPPMLQGNDVVAMARTGSGKTAAFLIPMLYHL 152
>gi|294929941|ref|XP_002779431.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239888539|gb|EER11226.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 863
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 117/161 (72%), Gaps = 1/161 (0%)
Query: 24 DNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMART 83
D G+T +KK GG FQ+ GL + K + K GY PTPIQRK IP++L G DVVAMART
Sbjct: 11 DVGHTTNKKIS-GGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMART 69
Query: 84 GSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLG 143
GSGKTA F+IPM++ LK H+ G RA+ILSPTRELA+QT K + LGKFT L+ ++G
Sbjct: 70 GSGKTAAFVIPMIQTLKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVG 129
Query: 144 GDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
G SM++QF RL ++PD+++ TPGR +H +VE +L L +QY
Sbjct: 130 GHSMESQFDRLSSNPDVLICTPGRLVHHMVEADLSLQRVQY 170
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP++L G DVVAMARTGSGKTA F+
Sbjct: 53 AIPVILGGSDVVAMARTGSGKTAAFVI 79
>gi|294875674|ref|XP_002767430.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
gi|239868997|gb|EER00148.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
Length = 952
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 117/161 (72%), Gaps = 1/161 (0%)
Query: 24 DNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMART 83
D G+T +KK GG FQ+ GL + K + K GY PTPIQRK IP++L G DVVAMART
Sbjct: 11 DVGHTTNKKIS-GGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMART 69
Query: 84 GSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLG 143
GSGKTA F+IPM++ LK H+ G RA+ILSPTRELA+QT K + LGKFT L+ ++G
Sbjct: 70 GSGKTAAFVIPMIQTLKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVG 129
Query: 144 GDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
G SM++QF RL ++PD+++ TPGR +H +VE +L L +QY
Sbjct: 130 GHSMESQFDRLSSNPDVLICTPGRLVHHMVEADLSLQRVQY 170
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP++L G DVVAMARTGSGKTA F+
Sbjct: 53 AIPVILGGSDVVAMARTGSGKTAAFVI 79
>gi|281209095|gb|EFA83270.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 1070
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 114/146 (78%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS L + K ++++G+K+PTPIQRKTIPL+L G DVVAMARTGSGKTA F++PM++K
Sbjct: 259 FQSMELHKTLFKAIVRKGFKVPTPIQRKTIPLILAGSDVVAMARTGSGKTAAFVVPMIQK 318
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L H+ G RA+ILSPTRELA+QT+K VK+ + L+S ++GGDSM++QFA L +P
Sbjct: 319 LGEHSIKVGARAIILSPTRELAIQTYKVVKDFTYGSNLRSCLVVGGDSMEDQFAELARNP 378
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI+VATPGR +H + E+ + LS++QY
Sbjct: 379 DIIVATPGRLVHHLQEVGMGLSTVQY 404
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
TIPL+L G DVVAMARTGSGKTA F+
Sbjct: 287 TIPLILAGSDVVAMARTGSGKTAAFV 312
>gi|326526589|dbj|BAJ97311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 880
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 116/149 (77%), Gaps = 1/149 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGF+S GL EV +GV +GY++PTPIQRK +PL+L G DV AMARTGSGKTA FL+PML
Sbjct: 73 GGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVPML 132
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
++L+ +G+RALILSPTR+LA QT KF +LGKFT L++ ++GG SM++QF L
Sbjct: 133 QRLRHRDPGAGIRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEVLAD 192
Query: 157 SPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
+PDIV+ATPGRF+HI+ + +L L S++Y
Sbjct: 193 NPDIVIATPGRFVHILSMVDDLSLRSVEY 221
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSS 243
T KF +LGKFT L++ ++GG SM++QF L +PDIV+ATPGRF+HI+ + +L L S
Sbjct: 159 TLKFTHQLGKFTDLKTGLIVGGGSMESQFEVLADNPDIVIATPGRFVHILSMVDDLSLRS 218
Query: 244 IQLSLTDFKQDTSRIALDLVGDSTEMIHK 272
++ + F + S +L +++HK
Sbjct: 219 VEYVV--FDEADSLFSLGFAEQLHKILHK 245
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+PL+L G DV AMARTGSGKTA FL R
Sbjct: 103 AMPLILAGLDVAAMARTGSGKTAAFLVPMLQRL 135
>gi|326504194|dbj|BAJ90929.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 873
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 116/149 (77%), Gaps = 1/149 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGF+S GL EV +GV +GY++PTPIQRK +PL+L G DV AMARTGSGKTA FL+PML
Sbjct: 66 GGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVPML 125
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
++L+ +G+RALILSPTR+LA QT KF +LGKFT L++ ++GG SM++QF L
Sbjct: 126 QRLRHRDPGAGIRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEVLAD 185
Query: 157 SPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
+PDIV+ATPGRF+HI+ + +L L S++Y
Sbjct: 186 NPDIVIATPGRFVHILSMVDDLSLRSVEY 214
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSS 243
T KF +LGKFT L++ ++GG SM++QF L +PDIV+ATPGRF+HI+ + +L L S
Sbjct: 152 TLKFTHQLGKFTDLKTGLIVGGGSMESQFEVLADNPDIVIATPGRFVHILSMVDDLSLRS 211
Query: 244 IQLSLTDFKQDTSRIALDLVGDSTEMIHK 272
++ + F + S +L +++HK
Sbjct: 212 VEYVV--FDEADSLFSLGFAEQLHKILHK 238
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+PL+L G DV AMARTGSGKTA FL R
Sbjct: 96 AMPLILAGLDVAAMARTGSGKTAAFLVPMLQRL 128
>gi|326514620|dbj|BAJ96297.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 873
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 116/149 (77%), Gaps = 1/149 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGF+S GL EV +GV +GY++PTPIQRK +PL+L G DV AMARTGSGKTA FL+PML
Sbjct: 66 GGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVPML 125
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
++L+ +G+RALILSPTR+LA QT KF +LGKFT L++ ++GG SM++QF L
Sbjct: 126 QRLRHRDPGAGIRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEVLAD 185
Query: 157 SPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
+PDIV+ATPGRF+HI+ + +L L S++Y
Sbjct: 186 NPDIVIATPGRFVHILSMVDDLSLRSVEY 214
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSS 243
T KF +LGKFT L++ ++GG SM++QF L +PDIV+ATPGRF+HI+ + +L L S
Sbjct: 152 TLKFTHQLGKFTDLKTGLIVGGGSMESQFEVLADNPDIVIATPGRFVHILSMVDDLSLRS 211
Query: 244 IQLSLTDFKQDTSRIALDLVGDSTEMIHK 272
++ + F + S +L +++HK
Sbjct: 212 VEYVV--FDEADSLFSLGFAEQLHKILHK 238
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+PL+L G DV AMARTGSGKTA FL R
Sbjct: 96 AMPLILAGLDVAAMARTGSGKTAAFLVPMLQRL 128
>gi|357147783|ref|XP_003574483.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 29-like
[Brachypodium distachyon]
Length = 851
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/149 (57%), Positives = 116/149 (77%), Gaps = 1/149 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGF+S GL EV +GV +GY++PTPIQRK +PL+L G DV AMARTGSGKTA FL+PML
Sbjct: 55 GGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVPML 114
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
++L+ +G+RALILSPTR+LA+QT KF +LGKFT L++ ++GG S+D+QF L
Sbjct: 115 QRLRRRDPGAGIRALILSPTRDLAMQTLKFAHQLGKFTGLKTEAIVGGGSIDSQFEILAD 174
Query: 157 SPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
+PDI++ATPGR +HI+ + +L L S++Y
Sbjct: 175 NPDIIIATPGRLVHILTMVNDLSLRSVEY 203
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSS 243
T KF +LGKFT L++ ++GG S+D+QF L +PDI++ATPGR +HI+ + +L L S
Sbjct: 141 TLKFAHQLGKFTGLKTEAIVGGGSIDSQFEILADNPDIIIATPGRLVHILTMVNDLSLRS 200
Query: 244 IQLSLTD 250
++ + D
Sbjct: 201 VEYVVFD 207
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 23/35 (65%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
+PL+L G DV AMARTGSGKTA FL R R
Sbjct: 85 AMPLILAGLDVAAMARTGSGKTAAFLVPMLQRLRR 119
>gi|261327581|emb|CBH10557.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 843
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 112/148 (75%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPM 95
GGGFQSFGL +L G+L+ GY +PTPIQR+ IP +++G D+VAMARTGSGKTA FLIPM
Sbjct: 25 GGGFQSFGLEKPLLDGILRLGYNVPTPIQRRAIPPMMQGNDIVAMARTGSGKTAAFLIPM 84
Query: 96 LEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L LK H+ GVR LILSPTREL++Q +F ++ KF L+ L+GG+S++ QF L
Sbjct: 85 LHLLKAHSKIVGVRGLILSPTRELSMQILRFGIQISKFLDLRFVALVGGNSLEQQFEMLA 144
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
++PDIVVATPGR LHI+ E L+LS ++
Sbjct: 145 SNPDIVVATPGRILHIMEEASLQLSMVK 172
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +++G D+VAMARTGSGKTA FL
Sbjct: 56 AIPPMMQGNDIVAMARTGSGKTAAFLI 82
>gi|72387978|ref|XP_844413.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358560|gb|AAX79020.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
gi|70800946|gb|AAZ10854.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 843
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 112/148 (75%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPM 95
GGGFQSFGL +L G+L+ GY +PTPIQR+ IP +++G D+VAMARTGSGKTA FLIPM
Sbjct: 25 GGGFQSFGLEKPLLDGILRLGYNVPTPIQRRAIPPMMQGNDIVAMARTGSGKTAAFLIPM 84
Query: 96 LEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L LK H+ GVR LILSPTREL++Q +F ++ KF L+ L+GG+S++ QF L
Sbjct: 85 LHLLKAHSKIVGVRGLILSPTRELSMQILRFGIQISKFLDLRFVALVGGNSLEQQFEMLA 144
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
++PDIVVATPGR LHI+ E L+LS ++
Sbjct: 145 SNPDIVVATPGRILHIMEEASLQLSMVK 172
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +++G D+VAMARTGSGKTA FL
Sbjct: 56 AIPPMMQGNDIVAMARTGSGKTAAFLI 82
>gi|350592518|ref|XP_003132951.3| PREDICTED: ATP-dependent RNA helicase DDX54-like [Sus scrofa]
Length = 684
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/116 (73%), Positives = 100/116 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIPL+L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPLILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD 145
CFLIPM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD
Sbjct: 149 CFLIPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGD 204
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 17/89 (19%)
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWD---------PA-----KKKY---VQVTDDTIPL 297
TS A D+ D+ E++ Q + +K P KK Y + TIPL
Sbjct: 70 TSECASDVEPDTRELVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPL 129
Query: 298 VLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+L+G+DVVAMARTGSGKTACFL F R
Sbjct: 130 ILDGKDVVAMARTGSGKTACFLIPMFERL 158
>gi|242081437|ref|XP_002445487.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
gi|241941837|gb|EES14982.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
Length = 666
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/147 (57%), Positives = 117/147 (79%), Gaps = 1/147 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL EV +GV +GY++PTPIQRKT+PL+L G DV AMARTGSGKTA FL+PML++
Sbjct: 63 FESMGLCEEVYRGVRHKGYRVPTPIQRKTMPLILAGVDVAAMARTGSGKTAAFLVPMLQR 122
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L+ ++GVRALILSPTR+LA+QT KF +LGKFT L+++ ++GGDSM++QF L P
Sbjct: 123 LRRRDPSAGVRALILSPTRDLAMQTLKFCIQLGKFTDLRTSIIVGGDSMESQFEDLSECP 182
Query: 159 DIVVATPGRFLHIVVEM-ELKLSSIQY 184
DI++ATPGR +H + ++ ++ L S++Y
Sbjct: 183 DIIIATPGRLMHHLNDVKDMTLRSVEY 209
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSS 243
T KF +LGKFT L+++ ++GGDSM++QF L PDI++ATPGR +H + ++ ++ L S
Sbjct: 147 TLKFCIQLGKFTDLRTSIIVGGDSMESQFEDLSECPDIIIATPGRLMHHLNDVKDMTLRS 206
Query: 244 IQLSLTD 250
++ + D
Sbjct: 207 VEYVVFD 213
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 24/35 (68%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
T+PL+L G DV AMARTGSGKTA FL R R
Sbjct: 91 TMPLILAGVDVAAMARTGSGKTAAFLVPMLQRLRR 125
>gi|294900795|ref|XP_002777119.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
gi|239884576|gb|EER08935.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
Length = 967
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 111/153 (72%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
KK GG FQ+ GL + K + K GY PTPIQRK IP +L G DVVAMARTGSGKTA F
Sbjct: 26 KKISGGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAF 85
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
+IPM++ LK H+ G RA+ILSPTRELA+QT K + LGKFT L+ ++GG SM++QF
Sbjct: 86 VIPMIQILKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQF 145
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
RL ++PD+++ TPGR +H +VE +L L +QY
Sbjct: 146 DRLSSNPDVLICTPGRLVHHMVEADLSLQRVQY 178
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K + LGKFT L+ ++GG SM++QF RL ++PD+++ TPGR +H +VE +L L +
Sbjct: 117 TIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPDVLICTPGRLVHHMVEADLSLQRV 176
Query: 245 Q 245
Q
Sbjct: 177 Q 177
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +L G DVVAMARTGSGKTA F+
Sbjct: 61 AIPAILGGSDVVAMARTGSGKTAAFVI 87
>gi|1764094|gb|AAB39865.1| ATP-dependent RNA helicase [Leishmania amazonensis]
Length = 855
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/153 (58%), Positives = 112/153 (73%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
+K+ GGGFQSF L +L +LK+G+ +PTPIQRK IP +L+G DVVAMARTGSGKTA
Sbjct: 18 EKEGGGGGFQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAA 77
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
FLIPML LK H+ G+R L+LSPTREL+LQ + L KF L+ L+GGDSMD Q
Sbjct: 78 FLIPMLNTLKAHSKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQ 137
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
F L ++PDIVVATPGR LHI+ E L L+S++
Sbjct: 138 FELLASNPDIVVATPGRLLHIMEEASLHLTSVR 170
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +L+G DVVAMARTGSGKTA FL
Sbjct: 54 AIPPMLQGNDVVAMARTGSGKTAAFLI 80
>gi|294899003|ref|XP_002776456.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
gi|239883447|gb|EER08272.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
Length = 977
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 111/153 (72%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
KK GG FQ+ GL + K + K GY PTPIQRK IP +L G DVVAMARTGSGKTA F
Sbjct: 25 KKISGGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAF 84
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
+IPM++ LK H+ G RA+ILSPTRELA+QT K + LGKFT L+ ++GG SM++QF
Sbjct: 85 VIPMIQILKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQF 144
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
RL ++PD+++ TPGR +H +VE +L L +QY
Sbjct: 145 DRLSSNPDVLICTPGRLVHHMVEADLSLQRVQY 177
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T K + LGKFT L+ ++GG SM++QF RL ++PD+++ TPGR +H +VE +L L +
Sbjct: 116 TIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPDVLICTPGRLVHHMVEADLSLQRV 175
Query: 245 Q 245
Q
Sbjct: 176 Q 176
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP +L G DVVAMARTGSGKTA F+
Sbjct: 60 AIPAILGGSDVVAMARTGSGKTAAFVI 86
>gi|325180097|emb|CCA14499.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 836
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 125/173 (72%), Gaps = 3/173 (1%)
Query: 15 PTVTISSNDDNG--NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL 72
PT SSND N KK K GGGFQ GL V + V+ GYK+PTPIQRK++PL+L
Sbjct: 2 PTDDASSNDTKASYNAKLKKNKKGGGFQHLGLSNPVYRAVMAMGYKVPTPIQRKSLPLIL 61
Query: 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132
G+DVV MARTGSGK+A FLIP++EKLK H+ G+R L+L+PTRELALQT +F K L K
Sbjct: 62 SGKDVVGMARTGSGKSAAFLIPLIEKLKEHSTRVGLRGLVLAPTRELALQTLQFTKGLAK 121
Query: 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
+T L+ + ++GG+ M+ QF+ L ++PDI+VATPGR +H + E+ + L S++Y
Sbjct: 122 YTSLRVSLIVGGEGMEQQFSALASNPDILVATPGRLMHHLQEIPDFNLKSVEY 174
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
++PL+L G+DVV MARTGSGK+A FL
Sbjct: 56 SLPLILSGKDVVGMARTGSGKSAAFLI 82
>gi|330812848|ref|XP_003291329.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
gi|325078509|gb|EGC32157.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
Length = 1031
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 112/146 (76%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL +L+ +LK+G+ +PTPIQR+TIPL+LEG DVV MARTGSGKT F+IPM++
Sbjct: 221 FQSMGLNKLLLRSILKKGFNVPTPIQRRTIPLILEGNDVVGMARTGSGKTGAFVIPMVQM 280
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L+ H+ GVR++ILSPTRELA+QTFK VK+ + T L++ ++GGDSM+ Q+ L +P
Sbjct: 281 LQEHSTVVGVRSVILSPTRELAIQTFKVVKDFTQGTNLRTILIVGGDSMEEQYDDLARNP 340
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR +H + E + LS ++Y
Sbjct: 341 DIIIATPGRLMHHLQETGMSLSKVKY 366
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 22/26 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
TIPL+LEG DVV MARTGSGKT F+
Sbjct: 249 TIPLILEGNDVVGMARTGSGKTGAFV 274
>gi|196009121|ref|XP_002114426.1| hypothetical protein TRIADDRAFT_58231 [Trichoplax adhaerens]
gi|190583445|gb|EDV23516.1| hypothetical protein TRIADDRAFT_58231 [Trichoplax adhaerens]
Length = 616
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/118 (71%), Positives = 101/118 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
++KKK GGFQS GL V KGV+K+GYK+PTPIQRKTIP++++GRDVVAMARTGSGKTA
Sbjct: 31 NRKKKKSGGFQSMGLSHVVFKGVMKKGYKLPTPIQRKTIPIIVDGRDVVAMARTGSGKTA 90
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
FLIPM EKLK H++ SG RALILSPTRELA+QT KFVKELG+FT L++ +LGGD +
Sbjct: 91 AFLIPMFEKLKAHSSQSGARALILSPTRELAVQTHKFVKELGRFTDLKTALVLGGDRL 148
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
TIP++++GRDVVAMARTGSGKTA FL F
Sbjct: 68 TIPIIVDGRDVVAMARTGSGKTAAFLIPMF 97
>gi|167382487|ref|XP_001736127.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
gi|165901566|gb|EDR27644.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
SAW760]
Length = 684
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
KK K GGFQS GL + L GVLK+GY++PTPIQRK IP +L G D++AMARTGSGKTA
Sbjct: 7 KKSKSSGGFQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAA 66
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
+L+P++ +L+TH +T GVR+LI+ PTRELALQT K ELGK T L+++ ++GG + +Q
Sbjct: 67 YLVPIINRLETH-STEGVRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQ 125
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
F L + PDI+VATPGR I+ + L+ ++
Sbjct: 126 FDNLSSGPDIIVATPGRLTFILEGANISLNRVE 158
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
IP +L G D++AMARTGSGKTA +L R +
Sbjct: 43 AIPAILRGNDIIAMARTGSGKTAAYLVPIINRLE 76
>gi|67479813|ref|XP_655288.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56472415|gb|EAL49901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703391|gb|EMD43850.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba
histolytica KU27]
Length = 684
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
KK K GGFQS GL + L GVLK+GY++PTPIQRK IP +L G D++AMARTGSGKTA
Sbjct: 7 KKSKSSGGFQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAA 66
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
+L+P++ +L+TH +T GVR+LI+ PTRELALQT K ELGK T L+++ ++GG + +Q
Sbjct: 67 YLVPIINRLETH-STEGVRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQ 125
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
F L + PDI+VATPGR I+ + L+ ++
Sbjct: 126 FDNLSSGPDIIVATPGRLTFILEGANISLNRVE 158
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
IP +L G D++AMARTGSGKTA +L R +
Sbjct: 43 AIPAILRGNDIIAMARTGSGKTAAYLVPIINRLE 76
>gi|407043198|gb|EKE41803.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 684
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
KK K GGFQS GL + L GVLK+GY++PTPIQRK IP +L G D++AMARTGSGKTA
Sbjct: 7 KKSKSSGGFQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAA 66
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
+L+P++ +L+TH +T GVR+LI+ PTRELALQT K ELGK T L+++ ++GG + +Q
Sbjct: 67 YLVPIINRLETH-STEGVRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQ 125
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
F L + PDI+VATPGR I+ + L+ ++
Sbjct: 126 FDNLSSGPDIIVATPGRLTFILEGANISLNRVE 158
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
IP +L G D++AMARTGSGKTA +L R +
Sbjct: 43 AIPAILRGNDIIAMARTGSGKTAAYLVPIINRLE 76
>gi|207346902|gb|EDZ73254.1| YDL031Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 846
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 106/134 (79%)
Query: 51 GVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRA 110
+ ++G++ PTPIQRKTIPL+L+ RD+V MARTGSGKTA F++PM+EKLK+H+ G RA
Sbjct: 2 NIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARA 61
Query: 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLH 170
+ILSP+RELA+QTF K+ + T+L+S L GGDS++ QF + +PD+++ATPGRFLH
Sbjct: 62 VILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLH 121
Query: 171 IVVEMELKLSSIQY 184
+ VEM L L S++Y
Sbjct: 122 LKVEMNLDLKSVEY 135
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 7/48 (14%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+R+ R+ P ++K TIPL+L+ RD+V MARTGSGKTA F+
Sbjct: 4 KRKGFRQPTPIQRK-------TIPLILQSRDIVGMARTGSGKTAAFIL 44
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 245 QLSLTD-FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV--QVTDDTIPLVLE- 300
QL +T+ F D ++ A DL D +HKQ +V KWD +KKYV Q D+ ++ E
Sbjct: 654 QLQITNGFANDAAQAAYDLNSDDKVQVHKQTATV-KWDKKRKKYVNTQGIDNKKYIIGES 712
Query: 301 GRDVVAMARTG 311
G+ + A R+G
Sbjct: 713 GQKIAASFRSG 723
>gi|402593242|gb|EJW87169.1| DEAD/DEAH box helicase, partial [Wuchereria bancrofti]
Length = 746
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 106/130 (81%), Gaps = 1/130 (0%)
Query: 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113
K+G++ PTPIQRK IP++++G+D+VAM+RTGSGKTA F+IP+L+KLK G+RALI+
Sbjct: 12 KKGFRQPTPIQRKAIPIIIDGKDIVAMSRTGSGKTAAFVIPILQKLKVRD-MKGIRALII 70
Query: 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 173
PTRELA+QTF VKELG+FT L+ L+GGD ++ QF +H PDIV+ATPGR LH++V
Sbjct: 71 EPTRELAMQTFTVVKELGRFTGLRCAVLVGGDRIEEQFQAVHEKPDIVIATPGRLLHVIV 130
Query: 174 EMELKLSSIQ 183
EM+ +LS++Q
Sbjct: 131 EMDFRLSAVQ 140
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
TF VKELG+FT L+ L+GGD ++ QF +H PDIV+ATPGR LH++VEM+ +LS++
Sbjct: 80 TFTVVKELGRFTGLRCAVLVGGDRIEEQFQAVHEKPDIVIATPGRLLHVIVEMDFRLSAV 139
Query: 245 QLSLTD 250
Q+ + D
Sbjct: 140 QVIVFD 145
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP++++G+D+VAM+RTGSGKTA F+
Sbjct: 25 AIPIIIDGKDIVAMSRTGSGKTAAFVI 51
>gi|412993031|emb|CCO16564.1| predicted protein [Bathycoccus prasinos]
Length = 910
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 110/147 (74%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKK+ GGF+S L ++ + + ++GY++PTPIQRK IP++ G DVVAMARTGSGKTA
Sbjct: 62 NKKKQKSGGFESMDLPPDIFRAIKRKGYRLPTPIQRKAIPVISTGVDVVAMARTGSGKTA 121
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
F++P+L L+ H+ +G RALIL+PTRELALQTF +++ KFT L+ L+GGDSM+
Sbjct: 122 AFVVPVLAALQKHSLRNGARALILAPTRELALQTFAVTRDMAKFTDLRLCALVGGDSMEM 181
Query: 150 QFARLHASPDIVVATPGRFLHIVVEME 176
QF L +PD++VATPGR LH E+E
Sbjct: 182 QFEDLANNPDVIVATPGRVLHHTNEIE 208
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
IP++ G DVVAMARTGSGKTA F+
Sbjct: 99 AIPVISTGVDVVAMARTGSGKTAAFV 124
>gi|340384313|ref|XP_003390658.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Amphimedon
queenslandica]
Length = 708
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/121 (63%), Positives = 105/121 (86%), Gaps = 1/121 (0%)
Query: 65 RKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTRELALQT 123
R+TIPL+++G+DVVAMARTGSGKTA FLIP+ E+LK+H+ SGVR LILSPTRELALQT
Sbjct: 14 RRTIPLIMDGKDVVAMARTGSGKTAAFLIPLFERLKSHSPQVSGVRGLILSPTRELALQT 73
Query: 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
KF KELG+FT L++ +LGGD +++QF+ +H +PDI++ATPGRFLH+++EM++KL ++
Sbjct: 74 MKFTKELGRFTGLRAAVILGGDRIEDQFSTMHENPDIIIATPGRFLHLLLEMDMKLLHVE 133
Query: 184 Y 184
Y
Sbjct: 134 Y 134
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 289 QVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
Q T TIPL+++G+DVVAMARTGSGKTA FL F R
Sbjct: 11 QQTRRTIPLIMDGKDVVAMARTGSGKTAAFLIPLFERL 48
>gi|298708839|emb|CBJ30797.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 819
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
G FQ+ GLG ++ +G++ GYK+PTP+QRK++P+ L G DVV MARTGSGKTA FLIP+L
Sbjct: 10 GSFQAMGLGQDLFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVL 69
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
EKL +H+ G R++ILSPTRELA+QT F +++ K L+ L+GGDSMD QF L
Sbjct: 70 EKLGSHSHKMGARSIILSPTRELAVQTLTFARKMSKLKDLRMALLVGGDSMDKQFTALAD 129
Query: 157 SPDIVVATPGRFLHIVVEM-ELKLSSIQ 183
+PDI++ATPGR +H + E+ E L S++
Sbjct: 130 NPDIIIATPGRLMHHLQEVPEFTLRSVE 157
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
V ++P+ L G DVV MARTGSGKTA FL
Sbjct: 36 VQRKSLPVTLAGADVVVMARTGSGKTAAFLI 66
>gi|340506877|gb|EGR32929.1| hypothetical protein IMG5_066580 [Ichthyophthirius multifiliis]
Length = 847
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/153 (51%), Positives = 109/153 (71%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
K+K GGGF+S L + V K + RG+ +PTPIQRK IPL+LEGRD+VA +RTGSGKTA F
Sbjct: 6 KRKKGGGFESMNLVYPVYKAIKARGFNVPTPIQRKAIPLILEGRDIVACSRTGSGKTAAF 65
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
+IP++ KL+TH+ T G RALI+ PTRELALQ +K KFT L + L+GG +++ QF
Sbjct: 66 VIPLVNKLQTHSRTVGARALIVLPTRELALQITSVLKSFIKFTDLTYSLLVGGHNLEGQF 125
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L +PDI++ TPGR ++ E L L+ +++
Sbjct: 126 ESLAGNPDILIVTPGRLSQLIDETGLTLNKVEF 158
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
IPL+LEGRD+VA +RTGSGKTA F+
Sbjct: 41 AIPLILEGRDIVACSRTGSGKTAAFV 66
>gi|358334419|dbj|GAA28065.2| ATP-dependent RNA helicase DDX54/DBP10, partial [Clonorchis
sinensis]
Length = 844
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/184 (53%), Positives = 119/184 (64%), Gaps = 18/184 (9%)
Query: 7 EDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRK 66
EDIE +D ++ + T ++KKK GGFQ GL F V KG+ KRGYK+PTPIQRK
Sbjct: 13 EDIETDDD--FAVAEARELVTTMNRKKKKSGGFQVMGLSFSVFKGITKRGYKLPTPIQRK 70
Query: 67 TIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126
IPL+L GRDVVAMARTGSGKTA FLIP+ EKL+ H T+G RALILSPTRELA+QT F
Sbjct: 71 AIPLILSGRDVVAMARTGSGKTAAFLIPLFEKLQQH-MTTGPRALILSPTRELAIQTLNF 129
Query: 127 VKE------LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 180
K+ L FT L TC +N H ++ATPGR LHI++EM L
Sbjct: 130 TKQVEWRINLPLFT-LVRTC---KKPYNN-----HLQSARIIATPGRLLHILMEMNFSLK 180
Query: 181 SIQY 184
+I+Y
Sbjct: 181 TIEY 184
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 24/29 (82%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFF 323
IPL+L GRDVVAMARTGSGKTA FL F
Sbjct: 72 IPLILSGRDVVAMARTGSGKTAAFLIPLF 100
>gi|403338502|gb|EJY68492.1| hypothetical protein OXYTRI_10894 [Oxytricha trifallax]
Length = 947
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 103/145 (71%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++F L + K + ++GY +PTPIQR+ IP++LEG +++AMARTGSGKT F+IP++EK
Sbjct: 36 FEAFNLSTFLYKAIKQKGYNLPTPIQRRAIPVILEGFNIIAMARTGSGKTGSFVIPIIEK 95
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LK H+ G R +ILSPTRE+A+QT + L K+T L + GG M+NQF RL +P
Sbjct: 96 LKAHSKVVGARCIILSPTREIAMQTATYFMSLAKYTDLTYALITGGSDMENQFERLLLNP 155
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
DI++A+PGR +H + E L LS +Q
Sbjct: 156 DIIIASPGRLMHCIQETGLSLSQVQ 180
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
IP++LEG +++AMARTGSGKT F+
Sbjct: 64 AIPVILEGFNIIAMARTGSGKTGSFVI 90
>gi|308805432|ref|XP_003080028.1| Predicted ATP-dependent RNA helicase FAL1, involved in rRNA
maturation, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
gi|116058487|emb|CAL53676.1| Predicted ATP-dependent RNA helicase FAL1, involved in rRNA
maturation, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
Length = 1222
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 103/148 (69%), Gaps = 14/148 (9%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
KKKK GGF+S + EV + V ++GY++PTPIQRK IP LEGRDVVAMARTGSGKTA
Sbjct: 460 KKKKSSGGFESMEILPEVFRAVKRKGYRVPTPIQRKAIPPALEGRDVVAMARTGSGKTAA 519
Query: 91 FLIPMLEKLKTHAATSG--VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD 148
FLIP+L KL+TH+ SG VR TF F KEL KFT L+ L+GGDSM+
Sbjct: 520 FLIPVLSKLRTHSFESGCTVRG------------TFAFAKELSKFTNLRVAALVGGDSME 567
Query: 149 NQFARLHASPDIVVATPGRFLHIVVEME 176
QFA L +PDI+VATPGR LH V E++
Sbjct: 568 AQFADLSNNPDIIVATPGRLLHHVEEVK 595
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 181 SIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 238
+++ TF F KEL KFT L+ L+GGDSM+ QFA L +PDI+VATPGR LH V E++
Sbjct: 538 TVRGTFAFAKELSKFTNLRVAALVGGDSMEAQFADLSNNPDIIVATPGRLLHHVEEVK 595
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 25/38 (65%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNF 331
IP LEGRDVVAMARTGSGKTA FL + +F
Sbjct: 496 AIPPALEGRDVVAMARTGSGKTAAFLIPVLSKLRTHSF 533
>gi|300122776|emb|CBK23793.2| unnamed protein product [Blastocystis hominis]
Length = 419
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 115/173 (66%), Gaps = 12/173 (6%)
Query: 24 DNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMART 83
++ T K G FQ G+ VL G++K G+KIPTPIQR TIP L+G+DVV MART
Sbjct: 37 NSNRTAKSSAKKSGTFQKMGVSKPVLAGIVKLGFKIPTPIQRATIPTALKGKDVVVMART 96
Query: 84 G-----------SGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132
G SGKTA FLIPM+EKLK H T GVR ++LSPTRELA Q+++ +L
Sbjct: 97 GKTSIQWDDCIGSGKTAAFLIPMVEKLKEHHLTGGVRGIVLSPTRELAYQSYRVFNKLSH 156
Query: 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQY 184
+T L+S L+GG+++++QF + PD++ ATPGR +H+++E+ + LSS+ +
Sbjct: 157 YTNLRSCILVGGEAIESQFESISKHPDVIFATPGRLMHMLLEVPDFSLSSLGF 209
>gi|300175040|emb|CBK20351.2| unnamed protein product [Blastocystis hominis]
Length = 466
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 113/170 (66%), Gaps = 12/170 (7%)
Query: 24 DNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMART 83
++ T K G FQ G+ VL G++K G+KIPTPIQR TIP L+G+DVV MART
Sbjct: 37 NSNRTAKSSAKKSGTFQKMGVSKPVLAGIVKLGFKIPTPIQRATIPTALKGKDVVVMART 96
Query: 84 G-----------SGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132
G SGKTA FLIPM+EKLK H T GVR ++LSPTRELA Q+++ +L
Sbjct: 97 GKTSIQWDDCIGSGKTAAFLIPMVEKLKEHHLTGGVRGIVLSPTRELAYQSYRVFNKLSH 156
Query: 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSS 181
+T L+S L+GG+++++QF + PD++ ATPGR +H+++E+ + LSS
Sbjct: 157 YTNLRSCILVGGEAIESQFESISKHPDVIFATPGRLMHMLLEVPDFSLSS 206
>gi|209880309|ref|XP_002141594.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209557200|gb|EEA07245.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 939
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPM 95
GG F +FG +++ V GY +PTPIQR+ P +L GRDVVAMARTGSGKT F++PM
Sbjct: 4 GGAFHTFGFSSPIIEAVRHIGYSLPTPIQRRCFPAILAGRDVVAMARTGSGKTIAFVLPM 63
Query: 96 LEKLKT-HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L++L H+ G+R LILSPTREL LQT++ V++ T ++ L GG S+D QF L
Sbjct: 64 LQRLGCKHSTIVGIRGLILSPTRELVLQTYRVVRKFAIKTDIRICTLTGGSSLDRQFENL 123
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSI 182
+PDIV+ATPGR H +VE +L LS+I
Sbjct: 124 SGNPDIVIATPGRLCHHIVEAKLSLSAI 151
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
P +L GRDVVAMARTGSGKT F+ R
Sbjct: 37 PAILAGRDVVAMARTGSGKTIAFVLPMLQRL 67
>gi|67598709|ref|XP_666233.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657185|gb|EAL36001.1| hypothetical protein Chro.30274, partial [Cryptosporidium hominis]
Length = 868
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 105/148 (70%), Gaps = 1/148 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
G FQSFG ++L+ + GY +PTPIQRK P +L GRDVVAMARTGSGKTA F++PM+
Sbjct: 4 GTFQSFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMI 63
Query: 97 EKLK-THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
E+L +H+ G+R ++LSPTRELALQT++ V++L T L L GG S+D QF L
Sbjct: 64 ERLGCSHSQIVGIRGVVLSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLS 123
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+PDIVVATPGR H ++E L L +++
Sbjct: 124 GNPDIVVATPGRLFHHIIEAGLSLIAVK 151
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQ 212
RL S +V G L E+ L+ T++ V++L T L L GG S+D Q
Sbjct: 65 RLGCSHSQIVGIRGVVLSPTRELALQ------TYRVVRKLACKTNLVVCALTGGSSLDRQ 118
Query: 213 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
F L +PDIVVATPGR H ++E L L ++++ + D
Sbjct: 119 FESLSGNPDIVVATPGRLFHHIIEAGLSLIAVKIIILD 156
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
P +L GRDVVAMARTGSGKTA F+ R
Sbjct: 36 PSILAGRDVVAMARTGSGKTAGFVLPMIERL 66
>gi|440295520|gb|ELP88433.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba invadens
IP1]
Length = 672
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
KK K GGFQS GL VL+G+L +G+K+PTPIQRK IP ++ G DV+AMARTGSGKTA
Sbjct: 6 KKSKSTGGFQSMGLSKHVLQGILHKGFKVPTPIQRKAIPAIMTGVDVIAMARTGSGKTAA 65
Query: 91 FLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
+L+P++EKL H+ GVR++++ PTRELALQT K EL T L+++ ++GG + Q
Sbjct: 66 YLVPIIEKLGFHSE-DGVRSIVICPTRELALQTVKVFNELTFKTNLRASLIIGGSKLYEQ 124
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSI 182
F L +PDI+VATPGR I+ + L +
Sbjct: 125 FENLEKNPDIIVATPGRLTFILESANISLQRV 156
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
IP ++ G DV+AMARTGSGKTA +L
Sbjct: 42 AIPAIMTGVDVIAMARTGSGKTAAYL 67
>gi|126644777|ref|XP_001388110.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117338|gb|EAZ51438.1| hypothetical protein cgd3_2330 [Cryptosporidium parvum Iowa II]
Length = 862
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
G FQ FG ++L+ + GY +PTPIQRK P +L GRDVVAMARTGSGKTA F++PM+
Sbjct: 4 GTFQCFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMI 63
Query: 97 EKLK-THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
E+L +H+ G+R +ILSPTRELALQT++ V++L T L L GG S+D QF L
Sbjct: 64 ERLGCSHSQIVGIRGVILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLS 123
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+PDIVVATPGR H ++E L L +++
Sbjct: 124 GNPDIVVATPGRLFHHIIEAGLSLIAVK 151
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQ 212
RL S +V G L E+ L+ T++ V++L T L L GG S+D Q
Sbjct: 65 RLGCSHSQIVGIRGVILSPTRELALQ------TYRVVRKLACKTNLVVCALTGGSSLDRQ 118
Query: 213 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
F L +PDIVVATPGR H ++E L L ++++ + D
Sbjct: 119 FESLSGNPDIVVATPGRLFHHIIEAGLSLIAVKIIVLD 156
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
P +L GRDVVAMARTGSGKTA F+ R
Sbjct: 36 PSILAGRDVVAMARTGSGKTAGFVLPMIERL 66
>gi|145473681|ref|XP_001462504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124430344|emb|CAK95131.1| unnamed protein product [Paramecium tetraurelia]
Length = 706
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 106/152 (69%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
K K GGF+S GL E+ + + +G+ +PTPIQRK IP +L GRD+VA ++TGSGKTA F
Sbjct: 5 KVKKSGGFESMGLIPELYRAIKSQGFNVPTPIQRKAIPQILAGRDIVACSKTGSGKTAAF 64
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
LIP++ KL+ H+ G+R LIL PTRELALQ +K L KF+ +Q + ++GG + QF
Sbjct: 65 LIPLINKLQNHSTVVGIRGLILLPTRELALQIASVLKALLKFSDIQYSIMVGGHGFEGQF 124
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L ++PDI++ TPGR L ++E LKLS +Q
Sbjct: 125 ESLASNPDILICTPGRVLQHLLEDRLKLSRVQ 156
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
IP +L GRD+VA ++TGSGKTA FL
Sbjct: 40 AIPQILAGRDIVACSKTGSGKTAAFL 65
>gi|323509361|dbj|BAJ77573.1| cgd3_2330 [Cryptosporidium parvum]
Length = 557
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
G FQ FG ++L+ + GY +PTPIQRK P +L GRDVVAMARTGSGKTA F++PM+
Sbjct: 4 GTFQCFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMI 63
Query: 97 EKLK-THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
E+L +H+ G+R +ILSPTRELALQT++ V++L T L L GG S+D QF L
Sbjct: 64 ERLGCSHSQIVGIRGVILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLS 123
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+PDIVVATPGR H ++E L L +++
Sbjct: 124 GNPDIVVATPGRLFHHIIEAGLSLIAVK 151
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQ 212
RL S +V G L E+ L+ T++ V++L T L L GG S+D Q
Sbjct: 65 RLGCSHSQIVGIRGVILSPTRELALQ------TYRVVRKLACKTNLVVCALTGGSSLDRQ 118
Query: 213 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTDFKQDTSRIAL-DLVGDSTEMIH 271
F L +PDIVVATPGR H ++E L L ++++ + D + L + E I
Sbjct: 119 FESLSGNPDIVVATPGRLFHHIIEAGLSLIAVKIIVLDEADRLFEMGLASQIEKILESIP 178
Query: 272 KQRQSV 277
K RQ V
Sbjct: 179 KNRQCV 184
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
P +L GRDVVAMARTGSGKTA F+ R
Sbjct: 36 PSILAGRDVVAMARTGSGKTAGFVLPMIERL 66
>gi|449018080|dbj|BAM81482.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 854
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 109/156 (69%), Gaps = 5/156 (3%)
Query: 32 KKKMGGGFQSFGL-GFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTAC 90
K G F + GL +++ ++ GY+ PTPIQRK IPL+L GRDVVAMARTGSGKTA
Sbjct: 18 KPPAGLAFVALGLDARRIVRALVHCGYREPTPIQRKVIPLILSGRDVVAMARTGSGKTAA 77
Query: 91 FLIPMLEKLKTHAATS-GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
FL+P+++++ H GVR L+LSPTRELALQTFKF+ E K+ +L++ L+GG+S++
Sbjct: 78 FLVPLIQRIALHPTQCVGVRGLVLSPTRELALQTFKFLCEYAKYARLRAALLIGGESLEA 137
Query: 150 QFARLHASPDIVVATPGRFLHI---VVEMELKLSSI 182
QFA L +P+++VATPGR L + V LKL I
Sbjct: 138 QFAALAQNPEVLVATPGRLLQVLDQVPHFSLKLLEI 173
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 24/32 (75%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IPL+L GRDVVAMARTGSGKTA FL R
Sbjct: 55 IPLILSGRDVVAMARTGSGKTAAFLVPLIQRI 86
>gi|145532170|ref|XP_001451846.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419512|emb|CAK84449.1| unnamed protein product [Paramecium tetraurelia]
Length = 250
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 106/152 (69%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
K K GGF+S GL E+ + + +G+ +PTPIQRK IP +L GRD+VA ++TGSGKTA F
Sbjct: 5 KVKKSGGFESMGLIPELYRAIKSQGFNVPTPIQRKAIPQILAGRDIVACSKTGSGKTAAF 64
Query: 92 LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
LIP++ KL+ H+ G+R LIL PTRELALQ +K L KF+ +Q + ++GG + QF
Sbjct: 65 LIPLINKLQNHSTVVGIRGLILLPTRELALQIASVLKALLKFSDIQYSIMVGGHGFEGQF 124
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L ++PDI++ TPGR L ++E LKLS +Q
Sbjct: 125 ESLASNPDILICTPGRVLQHLLEDRLKLSRVQ 156
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
IP +L GRD+VA ++TGSGKTA FL
Sbjct: 40 AIPQILAGRDIVACSKTGSGKTAAFL 65
>gi|118360242|ref|XP_001013358.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila]
gi|89295125|gb|EAR93113.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila SB210]
Length = 1130
Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats.
Identities = 74/146 (50%), Positives = 103/146 (70%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S L + V K + RG+ +PTPIQRK IPL+LEGRDVVA +RTGSGKTA F+IP++ K
Sbjct: 301 FESMNLVYPVYKAIKTRGFNMPTPIQRKAIPLILEGRDVVACSRTGSGKTAAFIIPLINK 360
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L+ H+ G RALI+ PTRELALQ +K KFT L T ++GG ++ QF L ++P
Sbjct: 361 LQNHSRIVGARALIVVPTRELALQIASVLKTFIKFTDLTYTLIVGGHGLEGQFESLASNP 420
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR ++ E +L L+ +++
Sbjct: 421 DIIIATPGRLSQLIDETDLSLNKVEF 446
Score = 45.1 bits (105), Expect = 0.050, Method: Composition-based stats.
Identities = 20/25 (80%), Positives = 23/25 (92%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFL 319
IPL+LEGRDVVA +RTGSGKTA F+
Sbjct: 330 IPLILEGRDVVACSRTGSGKTAAFI 354
>gi|393245270|gb|EJD52781.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 927
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 116/187 (62%), Gaps = 28/187 (14%)
Query: 26 GNTGDKKKKMGGG-FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMAR 82
G + KK ++GGG FQS GL +L+ + RGY+ PTPIQR TIP +L RD+V MAR
Sbjct: 84 GKSHVKKGEVGGGSFQSMGLHPSLLRALTLRGYRTPTPIQRLTIPALLATPPRDLVGMAR 143
Query: 83 TGSGKTACFLIPMLEKLKT-HAATSGVRALILSPTRELALQTFKFVKEL----------- 130
TGSGKT ++IP++++L H+ T G RALIL PTRELALQ K KEL
Sbjct: 144 TGSGKTLAYMIPLVQRLGGLHSTTFGARALILIPTRELALQVLKVGKELARGFNAAATGG 203
Query: 131 -------------GKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 177
GK + L+ ++GG+ MD+QF L ++PD+++ATPGR LH+ VEM L
Sbjct: 204 DHAGDAESLTPENGKGSALRWGLVVGGEGMDDQFEMLTSNPDVIIATPGRLLHVAVEMNL 263
Query: 178 KLSSIQY 184
L SIQY
Sbjct: 264 DLRSIQY 270
>gi|440803241|gb|ELR24149.1| ATPdependent RNA helicase ddx54, putative [Acanthamoeba castellanii
str. Neff]
Length = 792
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 90/111 (81%)
Query: 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133
G DVVAMARTGSGKTA F++PML KL+ H+ G R LILSPTRELALQT KF KELG F
Sbjct: 3 GSDVVAMARTGSGKTAAFVLPMLHKLQKHSFQFGARGLILSPTRELALQTLKFCKELGHF 62
Query: 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
T L+ CL+GGD+M++QF++L +PDI++ATPGR LH ++E+E+ L S+QY
Sbjct: 63 TDLRYCCLIGGDNMEDQFSQLTHNPDIMIATPGRLLHHLLEVEMSLKSVQY 113
>gi|393217844|gb|EJD03333.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 964
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 114/189 (60%), Gaps = 30/189 (15%)
Query: 26 GNTGDKKKKMGGG-FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMAR 82
G T K ++GGG FQS GL +L+ + RGYK+PTPIQR +IP +L RD+V MAR
Sbjct: 85 GKTKISKGEVGGGSFQSMGLHPPLLRSLTLRGYKVPTPIQRLSIPTLLANPPRDLVGMAR 144
Query: 83 TGSGKTACFLIPMLEKLK-THAATSGVRALILSPTRELALQTFKFVKEL----------- 130
TGSGKT +++P+ ++L HA T G RALIL PTRELALQ K KEL
Sbjct: 145 TGSGKTLAYMVPLTQRLSGRHATTFGARALILIPTRELALQVLKVGKELVRGWNSTEAGH 204
Query: 131 ---------------GKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM 175
K L+ ++GG+SMD QF + ++PD+++ATPGR LH++VEM
Sbjct: 205 AGDNTNDDGGDDGGSTKGQALRWGLVVGGESMDEQFEMITSNPDVIIATPGRLLHLIVEM 264
Query: 176 ELKLSSIQY 184
L L S+QY
Sbjct: 265 NLDLRSVQY 273
>gi|291001325|ref|XP_002683229.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
gi|284096858|gb|EFC50485.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
Length = 892
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 104/149 (69%), Gaps = 2/149 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F FGL +LK + + G+ PTPIQ+ +IP++ +GRDV+AMARTGSGKT +L P+ E
Sbjct: 39 AFAKFGLSQLLLKQIKRCGFFNPTPIQQSSIPVITQGRDVIAMARTGSGKTVSYLFPLFE 98
Query: 98 KLK-THAATSGVRALILSPTRELALQTFKFVKE-LGKFTKLQSTCLLGGDSMDNQFARLH 155
+L H++ G RA+I+ PTREL LQ K + + +GK + L++ L GG SM+ QF RL
Sbjct: 99 RLDYKHSSIVGARAVIIVPTRELVLQVNKVIYDFIGKTSDLKTCMLFGGKSMEGQFERLS 158
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
A+PDI++ATPGR LHI++E L L ++Y
Sbjct: 159 ANPDIIIATPGRLLHIILETGLSLKRVEY 187
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
+ +IP++ +GRDV+AMARTGSGKT +LF F R D
Sbjct: 64 IQQSSIPVITQGRDVIAMARTGSGKTVSYLFPLFERLD 101
>gi|169847756|ref|XP_001830587.1| ATP-dependent RNA helicase DBP10 [Coprinopsis cinerea okayama7#130]
gi|116508323|gb|EAU91218.1| ATP-dependent RNA helicase DBP10 [Coprinopsis cinerea okayama7#130]
Length = 949
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 116/181 (64%), Gaps = 22/181 (12%)
Query: 26 GNTGDKKKKMGGG-FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMAR 82
G G K ++GGG FQS GL +L+ + +GY+IPTPIQR +IP +LE RD+V MAR
Sbjct: 87 GKAGVAKGEVGGGSFQSMGLHPSLLRSLTLQGYRIPTPIQRLSIPALLENPPRDLVGMAR 146
Query: 83 TGSGKTACFLIPMLEKLK-THAATSGVRALILSPTRELALQTFKFVKEL----------- 130
TGSGK+ +++P++++L H T G RALIL PTRELA+Q K KEL
Sbjct: 147 TGSGKSLAYMVPLVQRLGGIHQTTFGARALILLPTRELAVQILKVGKELARGWHAKGDHA 206
Query: 131 ----GKFTKLQST---CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
G+ +K QS ++GG+ +D QF + +PD+++ATPGR LH+VVEM L L SIQ
Sbjct: 207 GDKEGESSKGQSLRWGLVVGGEGLDEQFEMITNNPDVIIATPGRLLHLVVEMNLDLKSIQ 266
Query: 184 Y 184
Y
Sbjct: 267 Y 267
>gi|353241240|emb|CCA73067.1| related to DBP10-putative ATP-dependent RNA helicase involved in
ribosome biogenesis [Piriformospora indica DSM 11827]
Length = 955
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 112/182 (61%), Gaps = 26/182 (14%)
Query: 29 GDKKKKMGGG-FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGS 85
G K ++GGG FQS GL +L+ + RGY+ PTPIQR +IP +L RD+V MARTGS
Sbjct: 76 GKAKNELGGGSFQSMGLHPSLLRALTLRGYRTPTPIQRSSIPTLLSNPPRDLVGMARTGS 135
Query: 86 GKTACFLIPMLEKLK-THAATSGVRALILSPTRELALQTFKFVKELGKFTK--------- 135
GKT ++IP+L++L H+ G RALIL P+RELA+Q K +EL + +
Sbjct: 136 GKTLAYMIPLLQRLGGRHSGVYGARALILVPSRELAVQVLKVGRELSRGWREAGDQEHAG 195
Query: 136 -------------LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 182
L+ ++GG+ +D QF + +PD+++ATPGR LH++VEM L LS+I
Sbjct: 196 ERDESGPSTSANALRWALVVGGEGLDEQFETMANNPDVIIATPGRLLHLLVEMSLNLSTI 255
Query: 183 QY 184
QY
Sbjct: 256 QY 257
>gi|388581211|gb|EIM21521.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 929
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 108/161 (67%), Gaps = 12/161 (7%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLI 93
GG FQS GL +L+ + RG+ PTPIQR IP +L RD+V MARTGSGKT +LI
Sbjct: 88 GGSFQSMGLNPSLLRSLFLRGFNQPTPIQRLAIPPILSTPPRDLVGMARTGSGKTLAYLI 147
Query: 94 PMLEKL-KTHAATSGVRALILSPTRELALQTFKFVKELGKFTK---------LQSTCLLG 143
P+++KL H+ G R+LIL P+RELALQ + KEL K K ++ + ++G
Sbjct: 148 PLVQKLGAQHSIRFGARSLILVPSRELALQILRVGKELVKGYKKEMGEGQEEMRWSVIVG 207
Query: 144 GDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
G+S+D+QF+ + ++PD+++ATPGR LH+ VEM L L S++Y
Sbjct: 208 GESLDDQFSLIASNPDVIIATPGRLLHLAVEMNLDLKSVEY 248
>gi|328864018|gb|EGG13117.1| hypothetical protein MELLADRAFT_32308 [Melampsora larici-populina
98AG31]
Length = 966
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 104/171 (60%), Gaps = 22/171 (12%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE--GRDVVAMARTGSGKTACFLI 93
GG FQS GL +L+ +L RG+ PTPIQR +P +L RDVV MARTGSGKT +LI
Sbjct: 114 GGSFQSLGLHPALLRAILLRGFTTPTPIQRAVLPHILASPARDVVGMARTGSGKTLAYLI 173
Query: 94 PMLEKLK-THAATSGVRALILSPTRELALQTFKFVKELGK-------------------F 133
P++ KL H GVRAL++ PTRELA+Q K K+L K
Sbjct: 174 PLIHKLGGRHNVLFGVRALVMVPTRELAVQVLKVGKDLAKGFVQGGGTQTGNEEEGGGKG 233
Query: 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+ ++GGDS++ QFA ++PD+++ATPGR LH+ VEM L L S+QY
Sbjct: 234 EGLRWGLIVGGDSLEEQFAMFASNPDVIIATPGRLLHLAVEMNLDLKSVQY 284
>gi|358058122|dbj|GAA96101.1| hypothetical protein E5Q_02762 [Mixia osmundae IAM 14324]
Length = 928
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 108/164 (65%), Gaps = 9/164 (5%)
Query: 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKT 88
KK G FQS G+ +LK +L RG+ PTPIQR +P +L RD+V MARTGSGKT
Sbjct: 96 KKAPGQGSFQSMGIQPNLLKTILMRGFHTPTPIQRAALPSILATPPRDLVGMARTGSGKT 155
Query: 89 ACFLIPMLEKLK-THAATSGVRALILSPTRELALQTFKFVKELGKFTK------LQSTCL 141
++IP++++L H+ G RAL++ PTRELALQ K K+L + K L+ +
Sbjct: 156 LAYMIPLIQRLGGQHSQKFGARALVMVPTRELALQVLKVGKDLSRGLKEGDSETLRWGLI 215
Query: 142 LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185
+GGD ++ QF + ++PD+++ATPGR LH++VEM+L +SS+ Y
Sbjct: 216 IGGDGLEEQFGLMASNPDVIIATPGRLLHLIVEMDLDMSSVAYA 259
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 166 GRFLHIVVEMELKLSSIQYTFKFVKEL--GKFTKLQSTCLLGGDSMDNQFARLHASPDIV 223
R L +V EL L ++ + L G L+ ++GGD ++ QF + ++PD++
Sbjct: 176 ARALVMVPTRELALQVLKVGKDLSRGLKEGDSETLRWGLIIGGDGLEEQFGLMASNPDVI 235
Query: 224 VATPGRFLHIVVEMELKLSSIQLSLTD 250
+ATPGR LH++VEM+L +SS+ ++ D
Sbjct: 236 IATPGRLLHLIVEMDLDMSSVAYAVFD 262
>gi|449546419|gb|EMD37388.1| hypothetical protein CERSUDRAFT_135966 [Ceriporiopsis subvermispora
B]
Length = 945
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 109/173 (63%), Gaps = 24/173 (13%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLI 93
GG FQS GL +L+ + +G++IPTPIQR +IP +L RD+V MARTGSGK+ ++I
Sbjct: 86 GGSFQSMGLHPWLLRSLTLQGFRIPTPIQRLSIPALLANPPRDLVGMARTGSGKSLAYMI 145
Query: 94 PMLEKLK-THAATSGVRALILSPTRELALQTFKFVKELG--------------------- 131
P++++L H++T G RALIL PTRELALQ K KEL
Sbjct: 146 PLIQRLGGRHSSTFGARALILLPTRELALQVLKVGKELARGWHAGEGDHAGDDRTSDDAK 205
Query: 132 KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
K L+ + ++GG+ +D QF + +PD+++ATPGR LH++VEM L L SIQY
Sbjct: 206 KGQSLRWSLIVGGEGLDEQFEMITNNPDVIIATPGRLLHLIVEMNLDLKSIQY 258
>gi|395333010|gb|EJF65388.1| ATP-dependent RNA helicase DBP10 [Dichomitus squalens LYAD-421 SS1]
Length = 962
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 108/173 (62%), Gaps = 24/173 (13%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLI 93
GG FQS GL +L+ + +G++IPTPIQR +IP +L RD+V MARTGSGK+ +L+
Sbjct: 96 GGSFQSMGLHPWLLRSLTLQGFRIPTPIQRLSIPALLANPPRDLVGMARTGSGKSLAYLV 155
Query: 94 PMLEKLK-THAATSGVRALILSPTRELALQTFKFVKELG--------------------- 131
P++++L H+AT G RALIL P RELALQ K KEL
Sbjct: 156 PLVQRLGGRHSATFGARALILLPARELALQILKVGKELARGWHAGEGDHAGDTHDVDEGK 215
Query: 132 KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
K L+ ++GG+S+D QF + +PD+++ATPGR LH++VEM L L S+QY
Sbjct: 216 KGQSLRWGLVVGGESLDEQFEMISNNPDVIIATPGRLLHLIVEMNLDLKSVQY 268
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 251 FKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMART 310
F + +A DL GD T +QR+ KWD KK++V+ T EG D V + +T
Sbjct: 758 FAEQARNVAFDLTGDETSAQERQRRE-NKWDKKKKRFVRGTG-------EGADNVKLVKT 809
Query: 311 GSGKTACFLFYFFFRFD 327
SG + Y RFD
Sbjct: 810 ESG-VKLPVTYRSGRFD 825
>gi|403414414|emb|CCM01114.1| predicted protein [Fibroporia radiculosa]
Length = 960
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 111/173 (64%), Gaps = 24/173 (13%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLI 93
GG FQS G+ +L+ + +G++IPTPIQR +IP +L RD+V MARTGSGK+ +++
Sbjct: 97 GGSFQSMGIHPWLLRSLTLQGFRIPTPIQRLSIPALLSNPPRDLVGMARTGSGKSLAYMV 156
Query: 94 PMLEKLK-THAATSGVRALILSPTRELALQTFKFVKEL--------------GKFTK--- 135
P++++L HA+T G RALIL P RELALQ K KEL GK T+
Sbjct: 157 PLVQRLGGRHASTFGARALILLPARELALQILKVGKELARGWNAGEGSHAGDGKDTEDGK 216
Query: 136 ----LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+ + ++GG+ MD QF + +PDI++ATPGR LH++VEM + L S+QY
Sbjct: 217 RGQGLRWSLIVGGEGMDEQFETISHNPDIIIATPGRLLHLIVEMNMDLKSVQY 269
>gi|403170885|ref|XP_003330153.2| hypothetical protein PGTG_11063 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168932|gb|EFP85734.2| hypothetical protein PGTG_11063 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1018
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 118/211 (55%), Gaps = 39/211 (18%)
Query: 13 EDPTVTISSNDDN---------GNTGDKKKKM------GGGFQSFGLGFEVLKGVLKRGY 57
ED + +SS N T + KKK GG FQS GL +L+ +L RG+
Sbjct: 43 EDEFIRLSSKKANFKAGSKVLRATTNNNKKKNPATLTGGGSFQSLGLHPSLLRAILLRGF 102
Query: 58 KIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLK-THAATSGVRALILS 114
PTPIQR +P +L RDVV MARTGSGKT +LIP+++ L H+ G+RALIL
Sbjct: 103 NSPTPIQRAALPHILASPPRDVVGMARTGSGKTLAYLIPLIQTLSGVHSVQFGIRALILV 162
Query: 115 PTRELALQTFKFVKELGK-FTK--------------------LQSTCLLGGDSMDNQFAR 153
PTRELALQ K K+L K F + L+ ++GGDS+++QF
Sbjct: 163 PTRELALQVLKVGKDLAKGFIQGDRSKPSTSQDSETNHKAEGLRWGLIVGGDSLEDQFTM 222
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+PD+++ATPGR LH+VVEM L L S+ +
Sbjct: 223 FSTNPDVIIATPGRLLHLVVEMNLDLKSVAF 253
>gi|302679352|ref|XP_003029358.1| hypothetical protein SCHCODRAFT_257992 [Schizophyllum commune H4-8]
gi|300103048|gb|EFI94455.1| hypothetical protein SCHCODRAFT_257992 [Schizophyllum commune H4-8]
Length = 924
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 107/172 (62%), Gaps = 23/172 (13%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLI 93
GG FQS GL +L+ + +G++IPTPIQR +IP +L RD+V MARTGSGKT ++I
Sbjct: 94 GGSFQSMGLHPSLLRSLTLQGFRIPTPIQRLSIPALLANPPRDLVGMARTGSGKTLGYMI 153
Query: 94 PMLEKLK-THAATSGVRALILSPTRELALQTFKFVKELG--------------------K 132
P++++L H+ T G RALIL PTRELALQ + KEL K
Sbjct: 154 PLVQRLGGRHSTTFGARALILIPTRELALQILRVGKELARGWHSCQGDHAGDSKTEETSK 213
Query: 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+ ++GG+ MD QF + +PD+++ATPGR LH++VEM L L S+QY
Sbjct: 214 GQSLRWGLIVGGEGMDEQFEMMTNNPDVIIATPGRLLHLIVEMNLDLKSVQY 265
>gi|402224187|gb|EJU04250.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 926
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 104/167 (62%), Gaps = 18/167 (10%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLI 93
GG FQS GL ++L+ +L RG+ PTPIQR +P +L RD+V MARTGSGKT ++I
Sbjct: 108 GGSFQSMGLQPQLLRALLLRGFNKPTPIQRLAVPALLSTPPRDLVGMARTGSGKTLAYMI 167
Query: 94 PMLEKLK-THAATSGVRALILSPTRELALQTFKFVKELGK---------------FTKLQ 137
P+L++L H T G RAL+L PTRELALQ K K+L + L+
Sbjct: 168 PLLQRLGGRHQTTFGARALVLIPTRELALQILKVGKDLSRGWHSGDKQGGEGDKSAVALR 227
Query: 138 STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++GG+ MD QF + +PD+++ATPGR LH+VVEM L L SI Y
Sbjct: 228 WGLIVGGEGMDEQFEMITNNPDVIIATPGRLLHLVVEMNLDLKSINY 274
>gi|46389757|dbj|BAD15109.1| hypothetical protein [Nicotiana tabacum]
Length = 274
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 87/109 (79%)
Query: 68 IPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127
+PL+L G DVVAMARTGSGKTA FL+PMLEKLK H +GVRALILSPTR+LALQT KF
Sbjct: 1 MPLILSGIDVVAMARTGSGKTAAFLLPMLEKLKQHVPQAGVRALILSPTRDLALQTLKFT 60
Query: 128 KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 176
KELG+FT ++ + L+GGDS +QF L SPDI++ATP R +H + E++
Sbjct: 61 KELGRFTDIRVSLLVGGDSKGSQFEELAQSPDIIIATPRRLMHHLSEVD 109
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 238
T KF KELG+FT ++ + L+GGDS +QF L SPDI++ATP R +H + E++
Sbjct: 56 TLKFTKELGRFTDIRVSLLVGGDSKGSQFEELAQSPDIIIATPRRLMHHLSEVD 109
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 22/26 (84%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLF 320
+PL+L G DVVAMARTGSGKTA FL
Sbjct: 1 MPLILSGIDVVAMARTGSGKTAAFLL 26
>gi|343428855|emb|CBQ72400.1| related to DBP10-putative ATP-dependent RNA helicase involved in
ribosome biogenesis [Sporisorium reilianum SRZ2]
Length = 1178
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 106/162 (65%), Gaps = 16/162 (9%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
FQS GL +L+ +L RG+ PTPIQR+ IP ++ RDVV MARTGSGKT +LIP++
Sbjct: 149 FQSMGLHPSLLRSLLIRGFNTPTPIQRQAIPAIMNQPPRDVVGMARTGSGKTLAYLIPLI 208
Query: 97 EKLK-THAATSGVRALILSPTRELALQTFKFVKELGKFTK-------------LQSTCLL 142
+L H+ T G+++LIL P+RELA+Q + KE+ + K ++ ++
Sbjct: 209 NRLNGRHSHTFGIKSLILCPSRELAVQILRVGKEIARGWKADPGEGQDNRGQAIRWAMIV 268
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
GG+S+D QFA + +PD+V+ATPGR LH+ VEM L L S++Y
Sbjct: 269 GGESLDEQFAIMSNNPDVVIATPGRMLHLTVEMNLDLKSVEY 310
>gi|426197540|gb|EKV47467.1| hypothetical protein AGABI2DRAFT_118043 [Agaricus bisporus var.
bisporus H97]
Length = 926
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 22/171 (12%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLI 93
GG FQS GL +L+ + +GY++PTPIQR TIP +L +D+V MARTGSGK+ ++I
Sbjct: 97 GGSFQSMGLHPSLLRSLTLQGYRVPTPIQRSTIPSLLANPPQDLVGMARTGSGKSLAYMI 156
Query: 94 PMLEKLK-THAATSGVRALILSPTRELALQTFKFVKELGK-------------------F 133
P++++L H+ T G RALIL PTRELALQ K KEL +
Sbjct: 157 PLVQRLGGRHSTTFGARALILLPTRELALQILKVGKELSRGWNSTSGDHAGDKEGQNSNS 216
Query: 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+ ++GG+ +D QF + +PD+++ATPGR LH++VEM L L SI Y
Sbjct: 217 QNLRWGLVVGGEGLDEQFEMITNNPDVIIATPGRLLHLIVEMNLDLKSINY 267
>gi|409080625|gb|EKM80985.1| hypothetical protein AGABI1DRAFT_127033 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 926
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 22/171 (12%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLI 93
GG FQS GL +L+ + +GY++PTPIQR TIP +L +D+V MARTGSGK+ ++I
Sbjct: 97 GGSFQSMGLHPSLLRSLTLQGYRVPTPIQRSTIPSLLANPPQDLVGMARTGSGKSLAYMI 156
Query: 94 PMLEKLK-THAATSGVRALILSPTRELALQTFKFVKELGK-------------------F 133
P++++L H+ T G RALIL PTRELALQ K KEL +
Sbjct: 157 PLVQRLGGRHSTTFGARALILLPTRELALQILKVGKELSRGWNSTSGDHAGDKEGQNSNS 216
Query: 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+ ++GG+ +D QF + +PD+++ATPGR LH++VEM L L SI Y
Sbjct: 217 QNLRWGLVVGGEGLDEQFEMITNNPDVIIATPGRLLHLIVEMNLDLKSINY 267
>gi|452824107|gb|EME31112.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 763
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 115/187 (61%), Gaps = 14/187 (7%)
Query: 11 GFEDPTVT------ISSNDDNGNTGDKKKKM-GGGFQSFGLGFEVLKGVLKRGYKIPTPI 63
GF+ PT + SS D + +KK + G F+S GL ++ + GY PTP+
Sbjct: 5 GFDLPTPSRGQHRKQSSRDFSKKKAEKKHTVRPGSFESLGLNNALVSNLRHLGYSFPTPV 64
Query: 64 QRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA------TSGVRALILSPTR 117
QRK IP +L G+D + MARTGSGKTA FL+P L KL SG+R +++SPTR
Sbjct: 65 QRKAIPPLLRGKDAIIMARTGSGKTAAFLLPTLNKLYQEGIGTSTKLVSGIRCVVISPTR 124
Query: 118 ELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME- 176
ELA+QTF F K+ K T L++ L+GG+ ++QFA L +PD ++ATPGR L I+ ++
Sbjct: 125 ELAMQTFGFFKKYAKGTNLKACLLVGGEPFESQFAALATNPDALIATPGRLLQILDQVSY 184
Query: 177 LKLSSIQ 183
L+L S++
Sbjct: 185 LRLHSVE 191
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
V IP +L G+D + MARTGSGKTA FL
Sbjct: 64 VQRKAIPPLLRGKDAIIMARTGSGKTAAFLL 94
>gi|428173676|gb|EKX42577.1| hypothetical protein GUITHDRAFT_46749, partial [Guillardia theta
CCMP2712]
Length = 385
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 105/151 (69%), Gaps = 7/151 (4%)
Query: 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91
KK G F + G+ + K ++ GYK PTP+QRK+IP +L G +VV MARTGSGKTA F
Sbjct: 1 KKHRPGSFPALGIEDSIAKALMHAGYKFPTPVQRKSIPELLSGANVVMMARTGSGKTAAF 60
Query: 92 LIPMLEKLKTHAATS-------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGG 144
L+P++++++ + ++ G++ L+L PTRELALQTF F K K+T+L + ++GG
Sbjct: 61 LVPLIQRIRAISDSNWAQGKVIGIQGLVLVPTRELALQTFNFFKSYAKYTQLTACLIVGG 120
Query: 145 DSMDNQFARLHASPDIVVATPGRFLHIVVEM 175
++++ QFA L +P++V+ATPGR L ++ E+
Sbjct: 121 EALEPQFAALATNPNVVIATPGRLLQLLNEV 151
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFL 319
V +IP +L G +VV MARTGSGKTA FL
Sbjct: 32 VQRKSIPELLSGANVVMMARTGSGKTAAFL 61
>gi|71022233|ref|XP_761347.1| hypothetical protein UM05200.1 [Ustilago maydis 521]
gi|74699940|sp|Q4P3W3.1|DBP10_USTMA RecName: Full=ATP-dependent RNA helicase DBP10
gi|46097655|gb|EAK82888.1| hypothetical protein UM05200.1 [Ustilago maydis 521]
Length = 1154
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 16/162 (9%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
FQS GL +L+ +L RG+ PTPIQR+ IP ++ RDVV MARTGSGKT +LIP++
Sbjct: 146 FQSMGLHPSLLRSLLIRGFTTPTPIQRQAIPAIMSQPPRDVVGMARTGSGKTLAYLIPLI 205
Query: 97 EKLK-THAATSGVRALILSPTRELALQTFKFVKELGKFTK-------------LQSTCLL 142
+L H+ T G+++LIL P+RELA+Q + KE+ + K ++ ++
Sbjct: 206 NRLNGRHSPTFGIKSLILCPSRELAVQILRVGKEIARGWKADAGEGQDSRGEAIRWAIIV 265
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
GG+S+D QF + +PD+V+ATPGR LH+ VEM L L S++Y
Sbjct: 266 GGESLDEQFGIMSNNPDVVIATPGRMLHLTVEMNLDLKSVEY 307
>gi|388856698|emb|CCF49658.1| related to DBP10-putative ATP-dependent RNA helicase involved in
ribosome biogenesis [Ustilago hordei]
Length = 1182
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 106/162 (65%), Gaps = 16/162 (9%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
FQS GL +L+ +L RG+ PTPIQR+ IP ++ RDVV MARTGSGKT +LIP++
Sbjct: 149 FQSMGLHPSLLRSLLIRGFSTPTPIQRQAIPAIIAQPPRDVVGMARTGSGKTLAYLIPLI 208
Query: 97 EKLK-THAATSGVRALILSPTRELALQTFKFVKELGKFTK-------------LQSTCLL 142
+L H++T G+++LIL P+RELA+Q + KE+ + K ++ ++
Sbjct: 209 NRLNGRHSSTFGIKSLILCPSRELAVQILRVGKEIARGWKGDPGKDQDSRGRAIRWAMIV 268
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
GG+S+D QF + +PD+V+ATPGR LH+ VEM L L S++Y
Sbjct: 269 GGESLDEQFGIMSNNPDVVIATPGRMLHLTVEMNLDLKSVEY 310
>gi|389744407|gb|EIM85590.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 910
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 109/175 (62%), Gaps = 26/175 (14%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLI 93
GG FQS GL +L+ + +G++ PTPIQR++IP++L RD+V MARTGSGK+ FL+
Sbjct: 29 GGSFQSMGLHPWLLRSLTLQGFRTPTPIQRQSIPVLLSNPPRDLVGMARTGSGKSLAFLV 88
Query: 94 PMLEKLKTHAATS-GVRALILSPTRELALQTFKFVKELGKFTK----------------- 135
P++++L ATS G RALI+ P RELALQ K KEL + +
Sbjct: 89 PLIQRLGGRHATSFGARALIMLPARELALQVMKVGKELARGWREGDGGHAGDKDNDDAED 148
Query: 136 ------LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+ ++GG+ +D QF + ++PD+++ATPGR LH++VEM L L S+QY
Sbjct: 149 GKRGQALRWGLIVGGEGLDEQFEMISSNPDVIIATPGRLLHLIVEMNLDLRSVQY 203
>gi|443893869|dbj|GAC71325.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 1155
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 105/162 (64%), Gaps = 16/162 (9%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
FQS GL +L+ +L RG+ PTPIQR+ IP V+ RDVV MARTGSGKT +LIP++
Sbjct: 147 FQSMGLHPSLLRSLLIRGFTTPTPIQRQAIPAVMAQPPRDVVGMARTGSGKTLAYLIPLI 206
Query: 97 EKLK-THAATSGVRALILSPTRELALQTFKFVKELGKFTK-------------LQSTCLL 142
+L H+ T G+++LI P+RELA+Q + KE+ + K ++ ++
Sbjct: 207 NRLNGRHSRTFGIKSLIFCPSRELAVQILRVGKEIARGWKADPGEGQDSRGEAIRWAMIV 266
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
GG+S+D QFA + +PD+V+ATPGR LH+ VEM L L S++Y
Sbjct: 267 GGESLDEQFAIMSNNPDVVIATPGRMLHLTVEMNLDLKSVEY 308
>gi|390602288|gb|EIN11681.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 970
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 26/185 (14%)
Query: 26 GNTGDKKKKMGGG-FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMAR 82
G T K ++GGG FQS GL +L+ + +G++IPTPIQR +IP +L RD+V MAR
Sbjct: 94 GKTKIAKGEVGGGSFQSMGLHPWILRSLSLQGFRIPTPIQRLSIPSLLSNPPRDLVGMAR 153
Query: 83 TGSGKTACFLIPMLEKLK-THAATSGVRALILSPTRELALQTFKFVKEL--GKFTK---- 135
TGSGK+ ++IP++++L H++T G RALIL PTRELALQ + KEL G+F
Sbjct: 154 TGSGKSLAYMIPLIQRLDGMHSSTFGARALILLPTRELALQILRVGKELARGRFAGGGEH 213
Query: 136 ----------------LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
L+ ++GG+ +D QF + +PD+++ATPGR LH++VEM L L
Sbjct: 214 AGDTAGDAEQSKKGQGLRWALVVGGEGLDEQFEMMTNNPDVIIATPGRLLHLIVEMNLDL 273
Query: 180 SSIQY 184
S++Y
Sbjct: 274 RSVEY 278
>gi|307104599|gb|EFN52852.1| hypothetical protein CHLNCDRAFT_26393, partial [Chlorella
variabilis]
Length = 313
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Query: 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131
++G DVV MARTGSGKTA F+IP++E+LK H+A +G RA+ILSPTRELALQT K VKELG
Sbjct: 1 MQGLDVVGMARTGSGKTAAFVIPLVERLKEHSARAGARAVILSPTRELALQTHKVVKELG 60
Query: 132 KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQY 184
+ + L++ L+GGDSM+ QFA L A PDI+VATPGR +H + E+E + L S +Y
Sbjct: 61 RHSNLRTAVLVGGDSMEAQFAELAAFPDILVATPGRLMHHLQEVEGMSLRSCEY 114
>gi|392570219|gb|EIW63392.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 956
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 24/173 (13%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLI 93
GG FQS GL +L+ + +G++IPTPIQR IP +L RD+V MARTGSGK+ +++
Sbjct: 101 GGSFQSMGLYPWLLRSLTLQGFRIPTPIQRLAIPALLSSPPRDLVGMARTGSGKSLAYMV 160
Query: 94 PMLEKLK-THAATSGVRALILSPTRELALQTFKFVKELG--------------------- 131
P++++L H+ T G RALIL P RELALQ K KEL
Sbjct: 161 PLVQRLGGRHSGTFGARALILLPARELALQILKVGKELARGWHAGEGDHAGEHKDTEDGK 220
Query: 132 KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
K L+ ++GG+S+D QF + ++PD+++ATPGR LH++VEM L L SI+Y
Sbjct: 221 KGQSLRWGLVVGGESLDEQFEMISSNPDVIIATPGRLLHLIVEMNLDLKSIEY 273
>gi|164660566|ref|XP_001731406.1| hypothetical protein MGL_1589 [Malassezia globosa CBS 7966]
gi|159105306|gb|EDP44192.1| hypothetical protein MGL_1589 [Malassezia globosa CBS 7966]
Length = 948
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 109/161 (67%), Gaps = 12/161 (7%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE--GRDVVAMARTGSGKTACFLI 93
GG FQS GL +L+ +L RG+ PTPIQR+ IP +L +DVV MARTGSGKT +++
Sbjct: 78 GGSFQSMGLHPSLLRSLLLRGFTTPTPIQRRAIPAILAQPSQDVVGMARTGSGKTLSYIV 137
Query: 94 PMLEKLKTHAATS-GVRALILSPTRELALQTFKFVKELGKFTK---------LQSTCLLG 143
P+L++L +TS G+++LIL P+RELA Q K K+L + + ++ ++G
Sbjct: 138 PLLQRLNGRHSTSFGIKSLILCPSRELAFQILKVGKDLARGWRSDDNARNEAIRWAVIVG 197
Query: 144 GDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
G+ +D QFA + A+PD+V+ATPGR LH+VVEM L L S++Y
Sbjct: 198 GEGLDEQFAMMTANPDVVIATPGRLLHLVVEMNLDLKSVEY 238
>gi|219116929|ref|XP_002179259.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409150|gb|EEC49082.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 476
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 3/140 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL EV KG+++ G+++PTP+QRK++P+VL G D V MARTGSGKT FLIP+LEK
Sbjct: 16 FKALGLSDEVYKGIIRMGFRMPTPVQRKSLPVVLTGVDTVVMARTGSGKTCAFLIPLLEK 75
Query: 99 -LKTHAATSG--VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L T +G VR +ILSPTREL+ QT + + +L T ++S + GG+ M+ QF +L
Sbjct: 76 LLDTPKGQNGNHVRGVILSPTRELSQQTLRVMNKLAADTDIRSIGIHGGEGMEKQFNQLA 135
Query: 156 ASPDIVVATPGRFLHIVVEM 175
+ PD+++ATPGR H + E+
Sbjct: 136 SKPDVIIATPGRLAHHLSEI 155
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 274 RQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
R R P ++K ++P+VL G D V MARTGSGKT FL
Sbjct: 31 RMGFRMPTPVQRK-------SLPVVLTGVDTVVMARTGSGKTCAFLI 70
>gi|392593758|gb|EIW83083.1| ATP-dependent RNA helicase DBP10 [Coniophora puteana RWD-64-598
SS2]
Length = 845
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 105/165 (63%), Gaps = 22/165 (13%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKL 99
GL +L+ + +GY+IPTPIQR +IP +L RD+V MARTGSGKT ++IP++++L
Sbjct: 1 MGLHPSLLRSLTLQGYRIPTPIQRSSIPSLLASPPRDLVGMARTGSGKTLAYMIPLVQRL 60
Query: 100 K-THAATSGVRALILSPTRELALQTFKFVKELGK----------------FTKLQS---T 139
H+ T G RALIL+PTRELALQ + KEL + TK QS
Sbjct: 61 GGRHSTTFGARALILTPTRELALQVLRVGKELARGWSDEGAHAGDQTGSDSTKGQSLRWG 120
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++GG+ +D QF + +PD+++ATPGR LH++VEM L L S+QY
Sbjct: 121 MIVGGEGLDEQFEMITNNPDVIIATPGRLLHLIVEMNLDLRSVQY 165
>gi|336371386|gb|EGN99725.1| hypothetical protein SERLA73DRAFT_88322 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384141|gb|EGO25289.1| hypothetical protein SERLADRAFT_437047 [Serpula lacrymans var.
lacrymans S7.9]
Length = 962
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 105/172 (61%), Gaps = 23/172 (13%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLI 93
GG FQS GL +L+ + +GY+ PTPIQR IP +L RD+V MARTGSGK+ ++I
Sbjct: 97 GGSFQSMGLHPSLLRSLTLQGYRTPTPIQRLAIPSLLANPPRDLVGMARTGSGKSLAYMI 156
Query: 94 PMLEKLK-THAATSGVRALILSPTRELALQTFKFVKELGK-------------------- 132
P+ ++L HA+T G RALIL P RELALQ + K+L +
Sbjct: 157 PLAQRLSGRHASTFGARALILLPARELALQVLRVGKDLTRGWHSSEGAHAGDGKGEDGGK 216
Query: 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+ ++GG+ +D QF + ++PD+++ATPGR LH++VEM L L S++Y
Sbjct: 217 GQSLRWGLVVGGEGLDEQFEMITSNPDVIIATPGRLLHLIVEMNLDLKSVEY 268
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 198 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
L+ ++GG+ +D QF + ++PD+++ATPGR LH++VEM L L S++ + D
Sbjct: 220 LRWGLVVGGEGLDEQFEMITSNPDVIIATPGRLLHLIVEMNLDLKSVEYVVFD 272
>gi|156083018|ref|XP_001608993.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis T2Bo]
gi|154796243|gb|EDO05425.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis]
Length = 783
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 111/173 (64%), Gaps = 13/173 (7%)
Query: 23 DDNGNTGDKKK-KMGGGFQSFGL-GFE-----VLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
D N NT KKK GG +FGL G + L+ L+ YK P+ IQR+TIP VL+GR
Sbjct: 4 DSNENTKQKKKSNHEGGTGAFGLLGLDRTLCYALEHKLR--YKQPSTIQRRTIPAVLQGR 61
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
DVV +ARTGSGKTA +L P+++ L+ H+ T GVR LIL PTRELALQ +K+ FTK
Sbjct: 62 DVVCIARTGSGKTAAYLAPVVQLLEGHSRTVGVRCLILLPTRELALQVSSVLKKFIAFTK 121
Query: 136 ----LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+S L+GG+S++ QF L +PD+VVATPGR + E + L+ + +
Sbjct: 122 RDDALRSATLIGGESVEGQFGALTFNPDLVVATPGRLSQHIAEKSIDLTLVTH 174
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 23/26 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
TIP VL+GRDVV +ARTGSGKTA +L
Sbjct: 53 TIPAVLQGRDVVCIARTGSGKTAAYL 78
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 194 KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTDFKQ 253
+F KL ST + G + + L+ D +V P ++ ELKL I L++T
Sbjct: 539 QFRKLDSTISVPGTTQPGEDPSLN---DFLV--PSAPTNVESHNELKLPQITLNITP--- 590
Query: 254 DTSRIALDLVGDSTEMIHKQR-QSVRKWDPAKKKYVQVTDDTI 295
DS E++ K R Q + WDP KKK+VQVT D +
Sbjct: 591 -----------DSEELMQKSRFQRKQHWDPKKKKFVQVTVDQM 622
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+L+ V + GY PTPIQ++ IP+VL GRDV+ A+TG+GKTA F +P+L++
Sbjct: 3 FADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+TS VRALIL+PTRELA+Q F+ VK K+ L+STC+ GG M Q
Sbjct: 63 LARHASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQIQ 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +IVVATPGR L V + ++L ++
Sbjct: 123 DLRNGIEIVVATPGRLLDHVQQKTIQLGQVE 153
>gi|123478847|ref|XP_001322584.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121905433|gb|EAY10361.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 703
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 91/127 (71%)
Query: 57 YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116
Y+ PTPIQ++ IP+VL DVVAM++TGSGKTA FL+P+++KL H+ +G R LI++P+
Sbjct: 20 YRKPTPIQKEVIPVVLADHDVVAMSKTGSGKTASFLLPIVQKLNEHSTITGCRCLIITPS 79
Query: 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 176
RELALQT + ++ T L+ ++GG+++ QF L +PD+++ATPGR L I+ E +
Sbjct: 80 RELALQTGHYFQKYASQTNLKCAQIIGGEALPPQFESLTKNPDVIIATPGRLLQIIAETQ 139
Query: 177 LKLSSIQ 183
LS +Q
Sbjct: 140 YSLSRVQ 146
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 285 KKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+K + + IP+VL DVVAM++TGSGKTA FL
Sbjct: 21 RKPTPIQKEVIPVVLADHDVVAMSKTGSGKTASFLL 56
>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 555
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +++ V + GY PTPIQR+ IP VL G D++A A+TG+GKTA F +P+LE+
Sbjct: 9 FNSLGLSEPLVRAVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILER 68
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L ATSG VRALIL+PTRELA Q + V+E GK+ KL+ST + GG ++ Q L
Sbjct: 69 LSHSRATSGKIPVRALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQIDALR 128
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DIVVATPGR L + + + LSS+Q
Sbjct: 129 RGVDIVVATPGRLLDHLQQRTIDLSSLQ 156
>gi|407831412|gb|EKF98153.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 763
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 87/113 (76%)
Query: 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130
+++G DVVAMARTGSGKTA FLIPML LK+H+ T G+R L+L+PTREL+LQ +F +L
Sbjct: 1 MIQGSDVVAMARTGSGKTAAFLIPMLNLLKSHSKTVGIRGLVLAPTRELSLQILRFGIQL 60
Query: 131 GKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
KF L+ L+GG+S++ QF L ++PDIVVATPGR LHI+ E LKLS ++
Sbjct: 61 DKFLDLRFAALVGGNSLEQQFELLGSNPDIVVATPGRLLHIMEEASLKLSMVK 113
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 186 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 245
+F +L KF L+ L+GG+S++ QF L ++PDIVVATPGR LHI+ E LKLS ++
Sbjct: 54 LRFGIQLDKFLDLRFAALVGGNSLEQQFELLGSNPDIVVATPGRLLHIMEEASLKLSMVK 113
Query: 246 LSLTD 250
+ D
Sbjct: 114 CLVLD 118
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 298 VLEGRDVVAMARTGSGKTACFLF 320
+++G DVVAMARTGSGKTA FL
Sbjct: 1 MIQGSDVVAMARTGSGKTAAFLI 23
>gi|254431629|ref|ZP_05045332.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
gi|197626082|gb|EDY38641.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
Length = 437
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 2/151 (1%)
Query: 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
M GF + GLG +LK V ++GY P+PIQ + IP VL G DV+A A+TG+GKTA F +P
Sbjct: 1 MPSGFAALGLGLPILKAVAEKGYTTPSPIQLECIPTVLAGHDVMAAAQTGTGKTAGFTLP 60
Query: 95 MLEKLK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
MLE+L+ HA VRAL+L+PTRELA Q + V G++ L+S + GG ++ Q
Sbjct: 61 MLERLRHGPHARGGVVRALVLTPTRELAAQVAENVAAYGRYLDLRSDVVFGGVKINPQIN 120
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
RL A DI+VATPGR L + + ++L ++
Sbjct: 121 RLRAGADILVATPGRLLDLQQQRAIRLDRVE 151
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V G++ L+S + GG ++ Q RL A DI+VATPGR L + + ++L +++ +
Sbjct: 95 VAAYGRYLDLRSDVVFGGVKINPQINRLRAGADILVATPGRLLDLQQQRAIRLDRVEVLV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
>gi|223996771|ref|XP_002288059.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977175|gb|EED95502.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 384
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 98/154 (63%), Gaps = 15/154 (9%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GGFQ+ L + G+ K GY+ PTP+QRK++P++L G D V MARTGSGKT FLIP+L
Sbjct: 1 GGFQTLNLSPPIFGGIKKLGYRTPTPVQRKSLPILLTGSDAVVMARTGSGKTVAFLIPVL 60
Query: 97 EKLKTHA-----------ATSGVRALILSPTRELALQTFKFVKELGKF----TKLQSTCL 141
E+L T A+ A++LSPTREL+LQT K ++ LG++ K +
Sbjct: 61 ERLLTARGEGNNSRGSKDASKSAFAVLLSPTRELSLQTLKVLRTLGQYCLNENKFNFIGI 120
Query: 142 LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM 175
GG+SM+ QFA L + PDI+VATPGR H + E+
Sbjct: 121 NGGESMEKQFALLSSHPDIIVATPGRLSHHLSEI 154
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF--DRGNFN 332
V ++P++L G D V MARTGSGKT FL R RG N
Sbjct: 27 VQRKSLPILLTGSDAVVMARTGSGKTVAFLIPVLERLLTARGEGN 71
>gi|321252662|ref|XP_003192483.1| DEAD box RNA helicase [Cryptococcus gattii WM276]
gi|317458951|gb|ADV20696.1| DEAD box RNA helicase, putative [Cryptococcus gattii WM276]
Length = 798
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 111/194 (57%), Gaps = 26/194 (13%)
Query: 15 PTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIP--LVL 72
P+ + + D G +K GG +++ +G ++++ +L R +K PTPIQR IP L
Sbjct: 6 PSWALETTAD-GEVKEKTSGPGGQWRALNVGPDLIRSLLMRKFKSPTPIQRAAIPPSLST 64
Query: 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132
RD++ MARTGSGKT +LIP+L++ + G RALIL P+RELA+Q + K+L +
Sbjct: 65 PPRDILGMARTGSGKTLAYLIPLLQRTGSTHHGQGPRALILCPSRELAVQIYSVGKDLAR 124
Query: 133 -----------------------FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
L+ ++GG+ MD QF ++ ++PDIV+ATPGRFL
Sbjct: 125 GMNKSNGKGKNKDEGEEDEEGKGKEGLRWAVIIGGEGMDAQFEKMSSNPDIVIATPGRFL 184
Query: 170 HIVVEMELKLSSIQ 183
H++VEM + L +Q
Sbjct: 185 HLIVEMHMDLRHLQ 198
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 198 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
L+ ++GG+ MD QF ++ ++PDIV+ATPGRFLH++VEM + L +Q + D
Sbjct: 151 LRWAVIIGGEGMDAQFEKMSSNPDIVIATPGRFLHLIVEMHMDLRHLQTVIYD 203
>gi|58263322|ref|XP_569071.1| DEAD box RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134108656|ref|XP_776981.1| hypothetical protein CNBB5090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818048|sp|P0CR07.1|DBP10_CRYNB RecName: Full=ATP-dependent RNA helicase DBP10
gi|338818049|sp|P0CR06.1|DBP10_CRYNJ RecName: Full=ATP-dependent RNA helicase DBP10
gi|50259664|gb|EAL22334.1| hypothetical protein CNBB5090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223721|gb|AAW41764.1| DEAD box RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 802
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 111/194 (57%), Gaps = 26/194 (13%)
Query: 15 PTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE- 73
P+ + + D G +K GG +++ +G ++++ +L R +K PTPIQR IP L
Sbjct: 6 PSWALETTAD-GEVKEKTSGPGGQWRALNVGPDLIRSLLIRKFKTPTPIQRAAIPPALST 64
Query: 74 -GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132
RD++ MARTGSGKT +LIP+L++ + G RALIL P+RELA+Q + K+L +
Sbjct: 65 PPRDILGMARTGSGKTLAYLIPLLQRTGSTHHGQGPRALILCPSRELAVQIYTVGKDLAR 124
Query: 133 -----------------------FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
L+ ++GG+ MD QF ++ ++PDIV+ATPGRFL
Sbjct: 125 GMNKGKGKGKNKNEDEEDEEGKGKEGLRWALIIGGEGMDAQFEKMSSNPDIVIATPGRFL 184
Query: 170 HIVVEMELKLSSIQ 183
H++VEM + L +Q
Sbjct: 185 HLIVEMHMDLRHLQ 198
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 198 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
L+ ++GG+ MD QF ++ ++PDIV+ATPGRFLH++VEM + L +Q + D
Sbjct: 151 LRWALIIGGEGMDAQFEKMSSNPDIVIATPGRFLHLIVEMHMDLRHLQTVIYD 203
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 100/151 (66%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ FGL ++LK + ++GY PTPIQ + IP+VL+GRDV+ A+TG+GKTA F +P++++
Sbjct: 18 FEDFGLSPDILKALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+ S VRALIL+PTRELA Q + VK +FT L+ST + GG M Q A
Sbjct: 78 LLAHASHSASPARHPVRALILTPTRELADQVAENVKAYSRFTPLRSTVVFGGVDMAPQTA 137
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L A +IV+ATPGR L V + + LS Q
Sbjct: 138 TLRAGVEIVIATPGRLLDHVQQKTVNLSQTQ 168
>gi|270358682|gb|ACZ81471.1| CNB00610 [Cryptococcus heveanensis]
Length = 974
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 108/176 (61%), Gaps = 24/176 (13%)
Query: 32 KKKMGGG--FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGK 87
KK G G +Q+ + +++K +L+R +K PTPIQR +IP L RD++ MARTGSGK
Sbjct: 22 KKSAGAGSQWQALNISDDLIKSLLQRKFKSPTPIQRSSIPGALSTPPRDILGMARTGSGK 81
Query: 88 TACFLIPMLEKL-KTHAATSGVRALILSPTRELALQTFKFVKEL---------------- 130
T +LIP+L+++ +H+ + RALIL P+RELA+Q + K+L
Sbjct: 82 TLAYLIPLLQRIGSSHSDVACPRALILCPSRELAVQIYSVGKDLARGTIRGKGKGKEKTS 141
Query: 131 ---GKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
GK L+ ++GG+ +D QF ++ +PD+V+ATPGRFLH+ VEM L L +Q
Sbjct: 142 DRDGKVESLRWALIIGGEGLDTQFDKMSRNPDVVIATPGRFLHLAVEMRLDLRHLQ 197
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 193 GKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
GK L+ ++GG+ +D QF ++ +PD+V+ATPGRFLH+ VEM L L +Q+ + D
Sbjct: 145 GKVESLRWALIIGGEGLDTQFDKMSRNPDVVIATPGRFLHLAVEMRLDLRHLQVVVYD 202
>gi|308197153|gb|ADO17669.1| CNB00610 [Tremella mesenterica]
Length = 700
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 107/168 (63%), Gaps = 14/168 (8%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
+Q G+ ++ +L RG+K PTPIQ+ T+PL L RDV+ MARTGSGKT +LIP+L
Sbjct: 36 WQRLGVNQSLIHSLLLRGFKSPTPIQKSTLPLTLASPPRDVLGMARTGSGKTLAYLIPLL 95
Query: 97 EKLKTHAA-TSGVRALILSPTRELALQTFKFVKELGKFTK---------LQSTCLLGGDS 146
++L + A ++ALIL P+RELA+Q K K+L + + L+ ++GG+S
Sbjct: 96 QRLSSSAVPVPSIKALILCPSRELAVQILKAGKDLARGLRKEPLKNEQPLRWAIIMGGES 155
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY--TFKFVKEL 192
+D+ F L PD+VVATPGR LH++VEM L L +++ T K + EL
Sbjct: 156 LDDHFEVLSGKPDVVVATPGRMLHLIVEMSLDLRTLEMVITTKPIGEL 203
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 198 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLT 249
L+ ++GG+S+D+ F L PD+VVATPGR LH++VEM L L ++++ +T
Sbjct: 145 LRWAIIMGGESLDDHFEVLSGKPDVVVATPGRMLHLIVEMSLDLRTLEMVIT 196
>gi|398835789|ref|ZP_10593146.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398215227|gb|EJN01792.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 487
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ FGL ++L+ + ++GY PTPIQ + IP+VL+GRDV+ A+TG+GKTA F +P+++
Sbjct: 18 FEDFGLSPDILRALTEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+TS VRALIL+PTRELA Q VK +FT L+ST + GG M Q A
Sbjct: 78 LLAHASTSASPARHPVRALILTPTRELADQVADNVKAYSRFTPLRSTVVFGGVDMAPQTA 137
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L A +IV+ATPGR L V + + LS Q
Sbjct: 138 TLRAGVEIVIATPGRLLDHVQQKTVNLSQTQ 168
>gi|392575556|gb|EIW68689.1| hypothetical protein TREMEDRAFT_39597 [Tremella mesenterica DSM
1558]
Length = 721
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 102/157 (64%), Gaps = 12/157 (7%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
+Q G+ ++ +L RG+K PTPIQ+ T+PL L RDV+ MARTGSGKT +LIP+L
Sbjct: 36 WQRLGVNQSLIHSLLLRGFKSPTPIQKSTLPLTLASPPRDVLGMARTGSGKTLAYLIPLL 95
Query: 97 EKLKTHAA-TSGVRALILSPTRELALQTFKFVKELGKFTK---------LQSTCLLGGDS 146
++L + A ++ALIL P+RELA+Q K K+L + + L+ ++GG+S
Sbjct: 96 QRLSSSAVPVPSIKALILCPSRELAVQILKAGKDLARGLRKEPLKNEQPLRWAIIMGGES 155
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+D+ F L PD+VVATPGR LH++VEM L L +++
Sbjct: 156 LDDHFEVLSGKPDVVVATPGRMLHLIVEMSLDLRTLE 192
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 198 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
L+ ++GG+S+D+ F L PD+VVATPGR LH++VEM L L ++++ + D
Sbjct: 145 LRWAIIMGGESLDDHFEVLSGKPDVVVATPGRMLHLIVEMSLDLRTLEMVIYD 197
>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase [Enterobacter cloacae SCF1]
gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
Length = 446
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDTLGLNPEILRAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA +RALIL+PTRELA Q + V+E K+ ++S + GG S++ Q +L
Sbjct: 63 LVQNEPHAKGRRPIRALILTPTRELAAQVGENVREYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + LKL S++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNALKLDSVE 151
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ D +G + E++ Q R+ P +K+ IP VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFDTLGLNPEILRAVAEQGYREPTPIQKQ-------AIPAVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFFFRF 326
F R
Sbjct: 54 GFTLPLLQRL 63
>gi|378768016|ref|YP_005196486.1| ATP-dependent RNA helicase RhlE [Pantoea ananatis LMG 5342]
gi|365187499|emb|CCF10449.1| ATP-dependent RNA helicase RhlE [Pantoea ananatis LMG 5342]
Length = 449
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+K
Sbjct: 3 FDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQK 62
Query: 99 LKTH-AATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + A G VRALIL+PTRELA Q + V E KF L+S + GG S++ Q +L
Sbjct: 63 LSANTGAVRGRRPVRALILTPTRELAAQVGENVVEYSKFLPLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L +V + + LS ++
Sbjct: 123 RGGVDILVATPGRLLDLVHQNAVDLSQVE 151
>gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 574
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L ++K VL++GY+ PTPIQ + IP VL+G D++ A+TG+GKTA F++PML K
Sbjct: 3 FEELNLAPAIIKAVLEQGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPMLHK 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A G+RAL+L+PTRELA Q + V+ GK+ +L ST + GG M+ Q +
Sbjct: 63 LSQSEAARNKFGGIGIRALVLTPTRELAAQVEESVQTYGKYVELTSTVIFGGVGMNPQIS 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ DI+VATPGR L ++ + L LS +Q
Sbjct: 123 RVKKGVDILVATPGRLLDLLQQGVLDLSQVQ 153
>gi|157369574|ref|YP_001477563.1| ATP-dependent RNA helicase RhlE [Serratia proteamaculans 568]
gi|157321338|gb|ABV40435.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
Length = 456
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+L+ V ++GY+ PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTH-AATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H A G VRALIL+PTRELA Q + V+ K+ +L+S + GG S++ Q +L
Sbjct: 63 LSKHDHAVKGRRPVRALILTPTRELAAQIGENVESYSKYLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + + LS I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQRAVDLSKIE 151
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ + +G S E++ + Q R+ P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFETLGLSAEILRAVEEQGYREPTPIQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
>gi|409044923|gb|EKM54404.1| hypothetical protein PHACADRAFT_258225 [Phanerochaete carnosa
HHB-10118-sp]
Length = 852
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 103/166 (62%), Gaps = 23/166 (13%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKL 99
GL +L+ + +G++IPTPIQR +IP +L RD+V MARTGSGK+ +LIP++++L
Sbjct: 1 MGLYPWLLRSLTLQGFRIPTPIQRLSIPALLTNPPRDLVGMARTGSGKSLAYLIPLVQRL 60
Query: 100 K-THAATSGVRALILSPTRELALQTFKFVKEL----------------GKFTK----LQS 138
H+ G RALIL P RELALQ K KEL G+++K L+
Sbjct: 61 GGRHSTAFGARALILLPARELALQVLKVGKELSRGYHAGEGEHAGDKEGEYSKKGQALRW 120
Query: 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++GG+ MD QF + +PD+++ATPGR LH++VEM L S+QY
Sbjct: 121 GLIVGGEGMDEQFEMMSNNPDVIIATPGRLLHLIVEMNLDFKSVQY 166
>gi|386015150|ref|YP_005933429.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355]
gi|386080118|ref|YP_005993643.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis PA13]
gi|327393211|dbj|BAK10633.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355]
gi|354989299|gb|AER33423.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis PA13]
Length = 449
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+K
Sbjct: 3 FDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQK 62
Query: 99 LKTH-AATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + A G VRALIL+PTRELA Q + V E K+ L+S + GG S++ Q +L
Sbjct: 63 LSANTGAVRGRRPVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L +V + + LS ++
Sbjct: 123 RGGVDILVATPGRLLDLVHQNAVDLSQVE 151
>gi|434406298|ref|YP_007149183.1| DNA/RNA helicase, superfamily II [Cylindrospermum stagnale PCC
7417]
gi|428260553|gb|AFZ26503.1| DNA/RNA helicase, superfamily II [Cylindrospermum stagnale PCC
7417]
Length = 470
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 100/152 (65%), Gaps = 7/152 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+++ V +RGY PTPIQ + IP VL GRD++A A+TG+GKTA F +P+L +
Sbjct: 3 FSTLGLSNEIVRAVTERGYTEPTPIQMQAIPAVLSGRDLLAGAQTGTGKTAGFTLPLLHR 62
Query: 99 LKTHAATSG-------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
L ++ + +G +RALIL+PTRELA Q + V+E GK+ L S + GG ++++Q
Sbjct: 63 LSSNKSVNGISSGFPPIRALILTPTRELAAQVEESVREYGKYLNLNSMVMFGGVNINSQK 122
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
RL DI+VATPGR L V + + LS ++
Sbjct: 123 RRLKGRVDILVATPGRLLDHVQQGTVNLSRVE 154
>gi|388257169|ref|ZP_10134349.1| ATP-dependent RNA helicase RhlE [Cellvibrio sp. BR]
gi|387939373|gb|EIK45924.1| ATP-dependent RNA helicase RhlE [Cellvibrio sp. BR]
Length = 474
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 98/150 (65%), Gaps = 5/150 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL ++L+ + +GY PTPIQ + IP VL+G D++A A+TG+GKTA F +P+LEK
Sbjct: 16 FDTLGLRADILRAIADQGYSTPTPIQLQAIPAVLKGGDILAGAQTGTGKTAGFTLPLLEK 75
Query: 99 LKTHAATSG-----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L A VRALIL+PTRELA Q F+ V++ GK+ L+ST + GG S++ Q +
Sbjct: 76 LSQAPAEQAAGRRPVRALILTPTRELAAQVFESVRDYGKYLPLRSTVVFGGVSINPQMMK 135
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L DI+VATPGR L +V + + L ++
Sbjct: 136 LRGGVDILVATPGRLLDLVNQNAVSLRQVE 165
>gi|291616785|ref|YP_003519527.1| RhlE [Pantoea ananatis LMG 20103]
gi|291151815|gb|ADD76399.1| RhlE [Pantoea ananatis LMG 20103]
Length = 449
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+K
Sbjct: 3 FDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQK 62
Query: 99 LKTH-AATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + A G VRALIL+PTRELA Q + V E K+ L+S + GG S++ Q +L
Sbjct: 63 LSANTGAVRGRRPVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L +V + + LS ++
Sbjct: 123 RGGVDILVATPGRLLDLVHQNAVDLSQVE 151
>gi|358636156|dbj|BAL23453.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 480
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+L+ V GY PTPIQ++ IP+VL GRD++ A+TG+GKTA F +P+L +
Sbjct: 3 FADLGLIPELLRAVADTGYTTPTPIQQQAIPVVLAGRDIMGGAQTGTGKTAGFTLPLLNR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+ S VRALIL+PTRELA+Q F+ VK K+ L++TC+ GG M Q
Sbjct: 63 LARHASASTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRTTCIYGGVDMKPQIQ 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +IVVATPGR L V + + L+ ++
Sbjct: 123 ELRNGVEIVVATPGRLLDHVQQKTIVLNQVE 153
>gi|390433214|ref|ZP_10221752.1| ATP-dependent RNA helicase RhlE [Pantoea agglomerans IG1]
Length = 456
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +PML+K
Sbjct: 3 FDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPMLQK 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L A VRALIL+PTRELA Q + V + K+ L+S + GG S++ Q +L
Sbjct: 63 LSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSMVVFGGVSINPQMVKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS ++
Sbjct: 123 RGGVDILVATPGRLLDLAQQNAVDLSQVE 151
>gi|372277732|ref|ZP_09513768.1| ATP-dependent RNA helicase RhlE [Pantoea sp. SL1_M5]
Length = 457
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +PML+K
Sbjct: 3 FDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPMLQK 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L A VRALIL+PTRELA Q + V + K+ L+S + GG S++ Q +L
Sbjct: 63 LSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSMVVFGGVSINPQMVKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS ++
Sbjct: 123 RGGVDILVATPGRLLDLAQQNAVDLSQVE 151
>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 512
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK ++++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 35 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+TS VRALIL+PTRELA Q V K T L+S + GG M+ Q A
Sbjct: 95 LLPHASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQMA 154
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L V + L +Q
Sbjct: 155 ELRRGVEILIATPGRLLDHVQQKTANLGQVQ 185
>gi|399217305|emb|CCF73992.1| unnamed protein product [Babesia microti strain RI]
Length = 903
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 37 GGFQSFGLGFEVLKGVLKR-GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPM 95
G F GL +++ + KR ++ P+PIQRK IP VL RD++ +ARTGSGKT +L P+
Sbjct: 72 GPFGMLGLSEDLIFSLEKRLKFRQPSPIQRKVIPHVLNARDILCLARTGSGKTISYLAPI 131
Query: 96 LEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+++L H+ G R LI+ PTREL+LQ K +++L L+ CL+GG ++ QF+ L
Sbjct: 132 VQRLNCHSTRVGSRCLIILPTRELSLQIVKVLRKLMVKNDLKIACLIGGQGIETQFSALA 191
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+PDI++ATPGR H +VE L+L ++
Sbjct: 192 NNPDILIATPGRLAHHLVEKSLQLVRVE 219
>gi|387902864|ref|YP_006333203.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577756|gb|AFJ86472.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 493
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK ++++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+TS VRALIL+PTRELA Q V K T L+S + GG M+ Q A
Sbjct: 73 LLPHASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQMA 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L V + L +Q
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|333926166|ref|YP_004499745.1| DEAD/DEAH box helicase [Serratia sp. AS12]
gi|333931119|ref|YP_004504697.1| DEAD/DEAH box helicase domain-containing protein [Serratia
plymuthica AS9]
gi|386327989|ref|YP_006024159.1| DEAD/DEAH box helicase [Serratia sp. AS13]
gi|333472726|gb|AEF44436.1| DEAD/DEAH box helicase domain protein [Serratia plymuthica AS9]
gi|333490226|gb|AEF49388.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS12]
gi|333960322|gb|AEG27095.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS13]
Length = 454
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 101/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+L+ V ++GY+ PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTH-AATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H A G VRALIL+PTRELA Q + V+ K +L+S + GG S++ Q +L
Sbjct: 63 LSKHDHAVKGRRPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS I+
Sbjct: 123 RGGVDILVATPGRLLDLEHQHAVDLSKIE 151
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ + +G S E++ + Q R+ P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFETLGLSAEILRAVEEQGYREPTPIQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
>gi|394988591|ref|ZP_10381426.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
gi|393791970|dbj|GAB71065.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
Length = 476
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+L+ V +GY PTPIQ + IP+VLEGRD++ A+TG+GKTA F +P+L+
Sbjct: 3 FENLGLSAELLRAVTDQGYTEPTPIQAQAIPVVLEGRDLMGGAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA TS VRALIL+PTRELA Q + V+ GK+ L+ST + GG ++ Q A
Sbjct: 63 LSIHANTSTSPAKHPVRALILTPTRELAAQVEESVQTYGKYLPLKSTVVFGGVNIKEQIA 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I+VATPGR L V + + LS ++
Sbjct: 123 ALKGGVEILVATPGRLLDHVEQKTVNLSKVE 153
>gi|415909527|ref|ZP_11553150.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
gi|407762572|gb|EKF71396.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
Length = 493
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ FGL ++LK + ++GY PTPIQ + IP+VL+GRDV+ A+TG+GKTA F +P++++
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+ S VRALIL+PTRELA Q V +FT L+ST + GG M Q A
Sbjct: 78 LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMSPQTA 137
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L A +IV+ATPGR L V + + LS Q
Sbjct: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQ 168
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV T IP+VL+GRDV+ A+TG+GKTA F R
Sbjct: 32 AEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQRL 78
>gi|399017820|ref|ZP_10720009.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398102587|gb|EJL92767.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 504
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ FGL ++LK + +GY PTPIQ + IP+VL+GRDV+ A+TG+GKTA F +P+++
Sbjct: 18 FEDFGLSPDILKALSAQGYIHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+TS VRALIL+PTRELA Q VK +FT L+ST + GG M Q A
Sbjct: 78 LLAHASTSMSPARHPVRALILTPTRELADQVADNVKAYSRFTPLRSTVVFGGVDMAPQTA 137
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +IV+ATPGR L V + + LS Q
Sbjct: 138 TLRGGVEIVIATPGRLLDHVQQKTVNLSQTQ 168
>gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
Length = 453
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY +PTPIQR+ IP+VL+GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNADILRAIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLLQI 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L +A VRALIL+PTRELA Q + V++ K+ KL+S + GG S++ Q +L
Sbjct: 63 LNENAQPIKGRRPVRALILTPTRELAAQIGENVEQYSKYLKLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS I+
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSKIE 151
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ KL+S + GG S++ Q +L DI+VATPGR L + + + LS I++ +
Sbjct: 95 VEQYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
>gi|239816654|ref|YP_002945564.1| DEAD/DEAH box helicase domain-containing protein [Variovorax
paradoxus S110]
gi|239803231|gb|ACS20298.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
Length = 601
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +LK V + GY PTPIQ + IP VLEG D++ A+TG+GKTA F +PML K
Sbjct: 3 FDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLHK 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L T A+ + G+RAL+L+PTRELA Q + V+ GK+ +L ST + GG M+ Q +
Sbjct: 63 LSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLELDSTVIFGGVGMNPQIS 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + + L LS +Q
Sbjct: 123 KLKKGVDILVATPGRLLDLQQQGMLDLSQVQ 153
>gi|317047409|ref|YP_004115057.1| DEAD/DEAH box helicase [Pantoea sp. At-9b]
gi|316949026|gb|ADU68501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
Length = 451
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L A + VRALIL+PTRELA Q + V+E ++ L+S + GG S++ Q +L
Sbjct: 63 LSAKDAPARGRRPVRALILTPTRELAAQVGENVREYSQYLNLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + + LS ++
Sbjct: 123 RGGVDVLVATPGRLLDLAHQNAVDLSHVE 151
>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
Length = 414
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|339481611|ref|YP_004693397.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338803756|gb|AEI99997.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 445
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 101/151 (66%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F +FGL E+++ V +RGY +PTPIQ + IP VL G D++A A+TG+GKTA F +P+L +
Sbjct: 3 FSTFGLSDEIIRAVTERGYTVPTPIQTQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILHR 62
Query: 99 LKTHA---ATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + +SG +RALIL PTRELA Q + V++ GK+ KL S ++GG +++ Q
Sbjct: 63 LSDKSIKGPSSGRPPIRALILVPTRELAAQVEESVRDYGKYLKLSSMIMIGGVNINPQIT 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
RL + DI+VATPGR L V + L LS I+
Sbjct: 123 RLKSRVDILVATPGRLLDHVQQKTLSLSHIE 153
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ GK+ KL S ++GG +++ Q RL + DI+VATPGR L V + L LS I++ +
Sbjct: 97 VRDYGKYLKLSSMIMIGGVNINPQITRLKSRVDILVATPGRLLDHVQQKTLSLSHIEILV 156
Query: 249 TD 250
D
Sbjct: 157 LD 158
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
B7210]
Length = 399
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
91]
Length = 411
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|253687917|ref|YP_003017107.1| DEAD/DEAH box helicase domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754495|gb|ACT12571.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 477
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 101/151 (66%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTP+QR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A + VRALIL+PTRELA Q + VK K+ +L+S + GG S++ Q
Sbjct: 63 LNSREAQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLRLRSLVVFGGVSINPQMM 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + + + LS I+
Sbjct: 123 KLRGGVDILVATPGRLLDLEHQNAVDLSQIE 153
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
V IP+VLEGRD++A A+TG+GKTA F
Sbjct: 27 VQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
14]
Length = 409
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
DM98]
Length = 409
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|293397166|ref|ZP_06641440.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
gi|291420637|gb|EFE93892.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
Length = 447
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 101/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+L+ V ++GY+ PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVLQL 62
Query: 99 LKTH-AATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H A G VRALIL+PTRELA Q + V+ K +L+S + GG S++ Q +L
Sbjct: 63 LSKHDHAVKGRRPVRALILTPTRELAAQIGENVQAYSKHLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS I+
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSKIE 151
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 8/62 (12%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ + +G S E++ + Q R+ P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFETLGLSAEILRAVEEQGYREPTPIQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CF 318
F
Sbjct: 54 GF 55
>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 487
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P+L++L A TS VRALIL+PTRELA Q V GK T L+S + GG
Sbjct: 67 LPILQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYGKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|392404056|ref|YP_006440668.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
gi|390612010|gb|AFM13162.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
Length = 424
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ FG + + V + G+K PTPIQ++ IP L G+D++ +A+TG+GKTA F++PMLEK
Sbjct: 4 FEKFGFSEAITRNVTRAGFKAPTPIQKEAIPHALAGKDILGLAQTGTGKTAAFVLPMLEK 63
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L A +RAL+++PTRELA Q + + LGK T+LQS + GG SM+ Q L
Sbjct: 64 LSAQPARK-IRALVVAPTRELAEQIHQVIVTLGKDTRLQSMTIYGGASMNRQLGELRKGV 122
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
DIVVA PGR L + L L +++
Sbjct: 123 DIVVACPGRLLDHLQRKSLTLDAVE 147
>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 487
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ FGL ++LK + ++GY PTPIQ + IP+VL+GRDV+ A+TG+GKTA F +P++++
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+ S VRALIL+PTRELA Q V +FT L+ST + GG M Q A
Sbjct: 78 LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L A +IV+ATPGR L V + + LS Q
Sbjct: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQ 168
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV T IP+VL+GRDV+ A+TG+GKTA F R
Sbjct: 32 AEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQRL 78
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|365089869|ref|ZP_09328377.1| DEAD/DEAH box helicase domain-containing protein, partial
[Acidovorax sp. NO-1]
gi|363416562|gb|EHL23666.1| DEAD/DEAH box helicase domain-containing protein, partial
[Acidovorax sp. NO-1]
Length = 441
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +LK V + GY+ PTPIQ + IP V+EG D++A A+TG+GKTA F +PML +
Sbjct: 3 FDELNLAPAILKAVHETGYETPTPIQAQAIPAVMEGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L AA G+RAL+L+PTRELA Q + V+E GK+ + ST + GG M+ Q
Sbjct: 63 LSQSAAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQID 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ DI+VATPGR L + + L LS++Q
Sbjct: 123 RIKRGVDILVATPGRLLDLQQQGFLDLSTVQ 153
>gi|440759128|ref|ZP_20938281.1| ATP-dependent RNA helicase RhlE [Pantoea agglomerans 299R]
gi|436427144|gb|ELP24828.1| ATP-dependent RNA helicase RhlE [Pantoea agglomerans 299R]
Length = 457
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+K
Sbjct: 3 FDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQK 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L A VRALIL+PTRELA Q + V + K+ L+S + GG S++ Q +L
Sbjct: 63 LSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSMVVFGGVSINPQMVKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS ++
Sbjct: 123 RGGVDILVATPGRLLDLAQQNAVDLSQVE 151
>gi|325983695|ref|YP_004296097.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325533214|gb|ADZ27935.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 445
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 101/151 (66%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F +FGL E+++ V +RGY +PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L +
Sbjct: 3 FATFGLSDEIIRAVTERGYTVPTPIQKQAIPAVLTGADLLAGAQTGTGKTAGFTLPILHR 62
Query: 99 L---KTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L ++G +RALIL PTRELA Q + V++ GK+ KL S ++GG +++ Q
Sbjct: 63 LSDKSVKGPSTGRPPIRALILVPTRELAAQVEESVRDYGKYLKLSSMMMIGGVNINPQIT 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
RL + DI+VATPGR L V + L LS I+
Sbjct: 123 RLKSRVDILVATPGRLLDHVQQKTLSLSQIE 153
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ GK+ KL S ++GG +++ Q RL + DI+VATPGR L V + L LS I++ +
Sbjct: 97 VRDYGKYLKLSSMMMIGGVNINPQITRLKSRVDILVATPGRLLDHVQQKTLSLSQIEILV 156
Query: 249 TD 250
D
Sbjct: 157 LD 158
>gi|398791375|ref|ZP_10552120.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
gi|398215429|gb|EJN01992.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
Length = 462
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 101/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSADILRAVAEQGYQEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L +T+ VRALIL+PTRELA Q + V+E ++ ++S + GG S++ Q +L
Sbjct: 63 LTAKPSTARGRRPVRALILTPTRELAAQVGENVREYSQYLDIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + + LS ++
Sbjct: 123 RGGVDVLVATPGRLLDLAHQNAVDLSQVE 151
>gi|398800298|ref|ZP_10559570.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
gi|398095465|gb|EJL85801.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
Length = 463
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 101/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSADILRAVAEQGYQEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L +T+ VRALIL+PTRELA Q + V+E ++ ++S + GG S++ Q +L
Sbjct: 63 LTAKPSTARGRRPVRALILTPTRELAAQVGENVREYSQYLDIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + + LS ++
Sbjct: 123 RGGVDVLVATPGRLLDLAHQNAVDLSQVE 151
>gi|304395765|ref|ZP_07377648.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|304357059|gb|EFM21423.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
Length = 457
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+K
Sbjct: 3 FDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQK 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L A VRALIL+PTRELA Q + V + K+ L+S + GG S++ Q +L
Sbjct: 63 LSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSMVVFGGVSINPQMVKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS ++
Sbjct: 123 RGGVDILVATPGRLLDLAQQNAVDLSQVE 151
>gi|378579002|ref|ZP_09827673.1| RNA helicase [Pantoea stewartii subsp. stewartii DC283]
gi|377818357|gb|EHU01442.1| RNA helicase [Pantoea stewartii subsp. stewartii DC283]
Length = 449
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTP+QR+ IP+VL GRD++A A+TG+GKTA F +P+L+K
Sbjct: 3 FDSLGLSADILRAVAEQGYSEPTPVQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQK 62
Query: 99 LKTHAAT----SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + T VRALIL+PTRELA Q + V + K+ L+S + GG S++ Q +L
Sbjct: 63 LSANTGTVRGRRPVRALILTPTRELAAQVGENVSDYSKYLPLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS ++
Sbjct: 123 RGGVDILVATPGRLLDLAHQNAVDLSQVE 151
>gi|270260820|ref|ZP_06189093.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
gi|270044304|gb|EFA17395.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
Length = 452
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+L+ V ++GY+ PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H VRALIL+PTRELA Q + V+ K +L+S + GG S++ Q +L
Sbjct: 63 LSKHDHPIKGRRPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS I+
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSKIE 151
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V+ K +L+S + GG S++ Q +L DI+VATPGR L + + + LS I++ +
Sbjct: 95 VEAYSKHLRLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ + +G S E++ + Q R+ P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFETLGLSAEILRAVEEQGYREPTPIQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
>gi|421782261|ref|ZP_16218719.1| ATP-dependent RNA helicase [Serratia plymuthica A30]
gi|407755624|gb|EKF65749.1| ATP-dependent RNA helicase [Serratia plymuthica A30]
Length = 454
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+L+ V ++GY+ PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H VRALIL+PTRELA Q + V+ K +L+S + GG S++ Q +L
Sbjct: 63 LSKHDHPIKGRRPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS I+
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSKIE 151
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V+ K +L+S + GG S++ Q +L DI+VATPGR L + + + LS I++ +
Sbjct: 95 VEAYSKHLRLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ + +G S E++ + Q R+ P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFETLGLSAEILRAVEEQGYREPTPIQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F
Sbjct: 84 KPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFS 143
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 144 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 203
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 204 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 240
>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 476
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 102/152 (67%), Gaps = 6/152 (3%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F+ GL ++L+ + ++GY PTPIQ++ IP++L+G DV+ A+TG+GKTA F +PML+
Sbjct: 6 SFEQLGLSTDLLRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTLPMLQ 65
Query: 98 KLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
KL++HA +S RALIL PTRELA+Q ++ V+ GK+ L+S + G ++D Q
Sbjct: 66 KLESHANSSTSPAKHPTRALILVPTRELAIQVYESVRAYGKYVALKSAVIYDGVNIDVQI 125
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
A + + +I+VATPGR L + + L LS I+
Sbjct: 126 AAIRSGVEILVATPGRLLDHLQQKNLILSKIE 157
>gi|329295987|ref|ZP_08253323.1| ATP-dependent RNA helicase RhlE [Plautia stali symbiont]
Length = 408
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 102/149 (68%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQR 62
Query: 99 L-KTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + AA G VRALIL+PTRELA Q + V+E ++ ++S + GG S++ Q +L
Sbjct: 63 LSEKPAAARGRRPVRALILTPTRELAAQVGENVREYSQYLNMRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + + LS ++
Sbjct: 123 RGGVDVLIATPGRLLDLAHQNAVDLSQVE 151
>gi|194442237|ref|YP_002040055.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|418790452|ref|ZP_13346227.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418791862|ref|ZP_13347613.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418798926|ref|ZP_13354599.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418808339|ref|ZP_13363894.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418812496|ref|ZP_13368019.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418815866|ref|ZP_13371361.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418820078|ref|ZP_13375513.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418833247|ref|ZP_13388177.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418835168|ref|ZP_13390064.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418842083|ref|ZP_13396896.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418843195|ref|ZP_13397994.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418850126|ref|ZP_13404845.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418853485|ref|ZP_13408174.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418859588|ref|ZP_13414190.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418861916|ref|ZP_13416466.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418869078|ref|ZP_13423519.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|194400900|gb|ACF61122.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|392758015|gb|EJA14892.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392765568|gb|EJA22354.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392769395|gb|EJA26128.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392775916|gb|EJA32606.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392776527|gb|EJA33214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392791233|gb|EJA47723.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392793094|gb|EJA49539.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392795819|gb|EJA52170.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392803986|gb|EJA60163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392807408|gb|EJA63479.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392817333|gb|EJA73248.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392819332|gb|EJA75204.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392826746|gb|EJA82467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392829782|gb|EJA85443.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392837155|gb|EJA92726.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392837768|gb|EJA93338.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
Length = 453
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|197247942|ref|YP_002145775.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|440761276|ref|ZP_20940363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440766050|ref|ZP_20945053.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440771501|ref|ZP_20950417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|197211645|gb|ACH49042.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|436421208|gb|ELP19056.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436423881|gb|ELP21678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436424985|gb|ELP22737.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
Length = 453
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 455
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|437843415|ref|ZP_20846970.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435295547|gb|ELO71998.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
Length = 455
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|16764183|ref|NP_459798.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167992052|ref|ZP_02573150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|374978841|ref|ZP_09720183.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378444299|ref|YP_005231931.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|378449185|ref|YP_005236544.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378698757|ref|YP_005180714.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|378983416|ref|YP_005246571.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378988204|ref|YP_005251368.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379700028|ref|YP_005241756.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383495604|ref|YP_005396293.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422024961|ref|ZP_16371428.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422029986|ref|ZP_16376224.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427547193|ref|ZP_18926740.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427563240|ref|ZP_18931505.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427598123|ref|ZP_18940041.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427628938|ref|ZP_18946004.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427652236|ref|ZP_18950770.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427660201|ref|ZP_18955720.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427665329|ref|ZP_18960478.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|16419327|gb|AAL19757.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|205329602|gb|EDZ16366.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261246078|emb|CBG23880.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267992563|gb|ACY87448.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157405|emb|CBW16894.1| hypothetical ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312911844|dbj|BAJ35818.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321226393|gb|EFX51444.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323129127|gb|ADX16557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332987751|gb|AEF06734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|380462425|gb|AFD57828.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. 798]
gi|414022550|gb|EKT06027.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414022674|gb|EKT06146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414024129|gb|EKT07524.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414026435|gb|EKT09705.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414036371|gb|EKT19205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414050948|gb|EKT33096.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414052210|gb|EKT34273.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414056455|gb|EKT38280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414061189|gb|EKT42625.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
Length = 454
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|427604256|ref|ZP_18941103.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414041027|gb|EKT23616.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
Length = 453
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|417364412|ref|ZP_12137345.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
gi|353597290|gb|EHC54049.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
Length = 452
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|429085612|ref|ZP_19148582.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
gi|426545220|emb|CCJ74623.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
Length = 474
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 99/148 (66%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ + ++GY PTPIQR+ IP+VL G+D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L + G VRALIL+PTRELA Q + V+E K+ ++S + GG S++ Q +L
Sbjct: 63 LTANEPQKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKLR 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 GGVDVLIATPGRLLDLEHQNAVKLDQVE 150
>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 456
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 97/150 (64%), Gaps = 6/150 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+L+ + ++GY PTPIQ K IPLVL GRD++A A+TG+GKTA F++P+LE+
Sbjct: 3 FAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
LK A+TS VRALILSPTRELA Q K+ L+ST + GG +MD Q
Sbjct: 63 LKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQTQ 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSI 182
L +I++ATPGR L V + ++L+ +
Sbjct: 123 ELRRGVEILIATPGRLLDHVGQKTVQLNKV 152
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
IPLVL GRD++A A+TG+GKTA F+ R +
Sbjct: 31 AIPLVLSGRDLLAAAQTGTGKTAAFMLPILERLKK 65
>gi|378955820|ref|YP_005213307.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|438146852|ref|ZP_20876018.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|357206431|gb|AET54477.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|434938585|gb|ELL45535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
Length = 453
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|205352078|ref|YP_002225879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|375122870|ref|ZP_09768034.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|445130786|ref|ZP_21381494.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|205271859|emb|CAR36694.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|326627120|gb|EGE33463.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|444851544|gb|ELX76633.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
Length = 453
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|168236748|ref|ZP_02661806.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|194735725|ref|YP_002113911.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194711227|gb|ACF90448.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197290147|gb|EDY29504.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
Length = 453
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|56414080|ref|YP_151155.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|167550495|ref|ZP_02344252.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168240684|ref|ZP_02665616.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168263681|ref|ZP_02685654.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168466416|ref|ZP_02700278.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|194451116|ref|YP_002044848.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197363003|ref|YP_002142640.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198243732|ref|YP_002214783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|207856257|ref|YP_002242908.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|375000580|ref|ZP_09724920.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375118271|ref|ZP_09763438.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|386590728|ref|YP_006087128.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|416421869|ref|ZP_11689773.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416431386|ref|ZP_11695540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416441634|ref|ZP_11701846.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416445410|ref|ZP_11704299.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416454128|ref|ZP_11710131.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459340|ref|ZP_11713849.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416467278|ref|ZP_11717295.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416481043|ref|ZP_11723099.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416500446|ref|ZP_11731517.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416505189|ref|ZP_11733623.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416523109|ref|ZP_11740856.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416530487|ref|ZP_11745013.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416537766|ref|ZP_11749062.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416546393|ref|ZP_11753879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416553658|ref|ZP_11757826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416560250|ref|ZP_11761079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416570320|ref|ZP_11765981.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416578494|ref|ZP_11770614.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416582432|ref|ZP_11772706.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416593743|ref|ZP_11780149.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416599470|ref|ZP_11783704.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416604972|ref|ZP_11786593.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416612620|ref|ZP_11791645.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416620697|ref|ZP_11795886.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416629582|ref|ZP_11800206.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416643586|ref|ZP_11806084.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416650093|ref|ZP_11810201.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416654173|ref|ZP_11812137.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416669875|ref|ZP_11819718.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416679932|ref|ZP_11823189.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416690487|ref|ZP_11825906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416707553|ref|ZP_11832651.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416714851|ref|ZP_11838169.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416716629|ref|ZP_11838976.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416724879|ref|ZP_11845263.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416730351|ref|ZP_11848602.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416740514|ref|ZP_11854470.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416756557|ref|ZP_11862643.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416760825|ref|ZP_11865033.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|417371944|ref|ZP_12142365.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|417454938|ref|ZP_12163427.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|418483709|ref|ZP_13052715.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418491688|ref|ZP_13058196.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418494018|ref|ZP_13060478.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418500025|ref|ZP_13066424.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418501847|ref|ZP_13068223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418509664|ref|ZP_13075956.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418510917|ref|ZP_13077187.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418526685|ref|ZP_13092654.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418763606|ref|ZP_13319721.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418765207|ref|ZP_13321297.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418769492|ref|ZP_13325522.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418773422|ref|ZP_13329406.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418780105|ref|ZP_13335996.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418783033|ref|ZP_13338884.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418803660|ref|ZP_13359278.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|419727968|ref|ZP_14254936.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419736759|ref|ZP_14263585.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419738617|ref|ZP_14265377.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419742538|ref|ZP_14269211.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419747650|ref|ZP_14274154.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|419790882|ref|ZP_14316548.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419794538|ref|ZP_14320150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421357993|ref|ZP_15808300.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421364779|ref|ZP_15815010.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421367454|ref|ZP_15817647.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421370361|ref|ZP_15820527.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421377806|ref|ZP_15827896.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421382364|ref|ZP_15832411.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421386100|ref|ZP_15836115.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421392135|ref|ZP_15842096.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421393025|ref|ZP_15842972.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421398933|ref|ZP_15848837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421404842|ref|ZP_15854678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421407977|ref|ZP_15857783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421411212|ref|ZP_15860980.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421419078|ref|ZP_15868774.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421421358|ref|ZP_15871026.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421424345|ref|ZP_15873988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421432250|ref|ZP_15881826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421434591|ref|ZP_15884140.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421438819|ref|ZP_15888313.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421446374|ref|ZP_15895786.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421450861|ref|ZP_15900231.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421569210|ref|ZP_16014914.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421573437|ref|ZP_16019073.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421580106|ref|ZP_16025667.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421584754|ref|ZP_16030261.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|436591026|ref|ZP_20512039.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436667097|ref|ZP_20517358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436801822|ref|ZP_20525138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436811759|ref|ZP_20530639.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436816131|ref|ZP_20533682.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436839279|ref|ZP_20537599.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436851726|ref|ZP_20542325.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436858488|ref|ZP_20547008.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436865664|ref|ZP_20551631.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436875162|ref|ZP_20557069.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436879149|ref|ZP_20559540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436884969|ref|ZP_20562367.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436896784|ref|ZP_20569540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436904121|ref|ZP_20574222.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436911286|ref|ZP_20577115.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436918637|ref|ZP_20581783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436930853|ref|ZP_20589078.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436933091|ref|ZP_20589530.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436942428|ref|ZP_20595374.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436947983|ref|ZP_20598389.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436963604|ref|ZP_20605881.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436969786|ref|ZP_20608701.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436977489|ref|ZP_20612267.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436995584|ref|ZP_20619309.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437005335|ref|ZP_20622427.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437022924|ref|ZP_20628789.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437032228|ref|ZP_20631872.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437041852|ref|ZP_20635757.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437050076|ref|ZP_20640357.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437055377|ref|ZP_20643520.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437068567|ref|ZP_20650698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437077641|ref|ZP_20655540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437086984|ref|ZP_20660993.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437088622|ref|ZP_20661659.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437108580|ref|ZP_20667547.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437124198|ref|ZP_20673269.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437134169|ref|ZP_20678593.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437138041|ref|ZP_20680771.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437147658|ref|ZP_20686940.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437156209|ref|ZP_20692134.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437161668|ref|ZP_20695604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437166399|ref|ZP_20698052.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437179723|ref|ZP_20705574.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437184726|ref|ZP_20708577.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437207742|ref|ZP_20712669.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437260816|ref|ZP_20717886.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437267035|ref|ZP_20721001.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437276394|ref|ZP_20726403.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437300726|ref|ZP_20733150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437311289|ref|ZP_20735884.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437320056|ref|ZP_20738223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437336531|ref|ZP_20743138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437420194|ref|ZP_20754571.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437447978|ref|ZP_20759146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437467994|ref|ZP_20764636.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437473851|ref|ZP_20765958.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437489679|ref|ZP_20770464.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437512856|ref|ZP_20777411.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437528012|ref|ZP_20780039.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437556151|ref|ZP_20784988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437579691|ref|ZP_20791741.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437596113|ref|ZP_20796163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437607079|ref|ZP_20800097.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437621948|ref|ZP_20804458.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437640751|ref|ZP_20807826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437659148|ref|ZP_20812075.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437690308|ref|ZP_20820226.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437712843|ref|ZP_20827219.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437735588|ref|ZP_20832484.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437782952|ref|ZP_20836607.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437804095|ref|ZP_20838764.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|438089517|ref|ZP_20860192.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438104757|ref|ZP_20866021.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438114074|ref|ZP_20869850.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|445139834|ref|ZP_21384592.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445152653|ref|ZP_21390929.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445177694|ref|ZP_21397816.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445197126|ref|ZP_21400661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445227809|ref|ZP_21404421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445340930|ref|ZP_21416592.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445348207|ref|ZP_21419576.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445367477|ref|ZP_21425604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|56128337|gb|AAV77843.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|194409420|gb|ACF69639.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|195631083|gb|EDX49669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197094480|emb|CAR59997.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197938248|gb|ACH75581.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205324518|gb|EDZ12357.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205339744|gb|EDZ26508.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205347690|gb|EDZ34321.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206708060|emb|CAR32351.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|322616296|gb|EFY13205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619546|gb|EFY16421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622758|gb|EFY19603.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628670|gb|EFY25457.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631607|gb|EFY28363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637134|gb|EFY33837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641666|gb|EFY38302.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644539|gb|EFY41079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322654208|gb|EFY50531.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658123|gb|EFY54390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663597|gb|EFY59799.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322670333|gb|EFY66473.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671569|gb|EFY67691.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676925|gb|EFY72992.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682850|gb|EFY78869.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686529|gb|EFY82511.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194574|gb|EFZ79767.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199095|gb|EFZ84191.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202050|gb|EFZ87109.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323213909|gb|EFZ98679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215239|gb|EFZ99984.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220842|gb|EGA05280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323227299|gb|EGA11467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229917|gb|EGA14040.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233142|gb|EGA17238.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240877|gb|EGA24919.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243194|gb|EGA27214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248733|gb|EGA32661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251737|gb|EGA35604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323261448|gb|EGA45029.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267879|gb|EGA51358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|326622538|gb|EGE28883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|353075268|gb|EHB41028.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353606659|gb|EHC60830.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|353635043|gb|EHC81466.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|363550756|gb|EHL35082.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363550939|gb|EHL35264.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363556123|gb|EHL40338.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363562577|gb|EHL46673.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363562885|gb|EHL46973.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363574925|gb|EHL58784.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363575604|gb|EHL59454.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366060253|gb|EHN24517.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366060684|gb|EHN24944.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366063265|gb|EHN27485.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366069492|gb|EHN33615.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366076294|gb|EHN40332.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366077759|gb|EHN41768.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366085166|gb|EHN49056.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366828276|gb|EHN55163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205293|gb|EHP18808.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|381290433|gb|EIC31698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381301550|gb|EIC42606.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381302017|gb|EIC43066.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381313833|gb|EIC54612.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381316617|gb|EIC57363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|383797772|gb|AFH44854.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392612625|gb|EIW95094.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392614840|gb|EIW97284.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392733074|gb|EIZ90280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392739788|gb|EIZ96920.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392741360|gb|EIZ98465.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392750338|gb|EJA07307.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392753796|gb|EJA10717.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392758103|gb|EJA14979.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392772755|gb|EJA29455.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|395983007|gb|EJH92201.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395985974|gb|EJH95138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395989088|gb|EJH98223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395998083|gb|EJI07121.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|395998271|gb|EJI07303.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396006913|gb|EJI15874.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396009815|gb|EJI18738.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396014719|gb|EJI23604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396019276|gb|EJI28133.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396024689|gb|EJI33474.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396029107|gb|EJI37846.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396029377|gb|EJI38114.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396036586|gb|EJI45245.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396040673|gb|EJI49296.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396046746|gb|EJI55329.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396050641|gb|EJI59163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396060342|gb|EJI68788.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396060399|gb|EJI68844.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396061956|gb|EJI70369.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396065357|gb|EJI73734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396072047|gb|EJI80362.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|402520585|gb|EJW27927.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402527564|gb|EJW34825.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402527696|gb|EJW34956.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402530726|gb|EJW37940.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|434957778|gb|ELL51385.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434964390|gb|ELL57412.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434974247|gb|ELL66635.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434979916|gb|ELL71867.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434980587|gb|ELL72508.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434987028|gb|ELL78679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434990640|gb|ELL82190.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434994753|gb|ELL86070.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|434996699|gb|ELL88015.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435007132|gb|ELL97989.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435013151|gb|ELM03811.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435014459|gb|ELM05025.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|435016673|gb|ELM07199.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435017493|gb|ELM07995.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435025531|gb|ELM15662.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435030635|gb|ELM20644.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435032508|gb|ELM22452.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435042627|gb|ELM32344.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435044146|gb|ELM33844.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435048853|gb|ELM38409.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435056721|gb|ELM46092.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435058556|gb|ELM47877.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435063026|gb|ELM52198.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435070702|gb|ELM59684.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435071675|gb|ELM60615.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435076182|gb|ELM64978.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435080164|gb|ELM68857.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435085116|gb|ELM73670.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435095058|gb|ELM83395.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435095217|gb|ELM83535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435098719|gb|ELM86950.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435103130|gb|ELM91233.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435103345|gb|ELM91440.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435116657|gb|ELN04392.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435119369|gb|ELN06985.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435119648|gb|ELN07250.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435120552|gb|ELN08130.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435133761|gb|ELN20917.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435133978|gb|ELN21122.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435136988|gb|ELN24060.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435144725|gb|ELN31557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435150330|gb|ELN37008.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435153057|gb|ELN39678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435160643|gb|ELN46906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435163272|gb|ELN49408.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435173752|gb|ELN59221.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435176187|gb|ELN61577.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435178589|gb|ELN63796.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435184051|gb|ELN68997.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435197394|gb|ELN81679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435197600|gb|ELN81883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435201396|gb|ELN85308.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435204891|gb|ELN88542.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435209245|gb|ELN92573.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435215443|gb|ELN98130.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435224774|gb|ELO06723.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435230548|gb|ELO11854.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435231681|gb|ELO12910.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435241271|gb|ELO21636.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435241692|gb|ELO22034.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435246979|gb|ELO26966.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435250443|gb|ELO30173.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435254285|gb|ELO33688.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435256168|gb|ELO35513.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435270200|gb|ELO48704.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435276700|gb|ELO54698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435281679|gb|ELO59339.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435285984|gb|ELO63326.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435287126|gb|ELO64341.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435299320|gb|ELO75472.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435303024|gb|ELO78945.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435316942|gb|ELO90018.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435322053|gb|ELO94394.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435329098|gb|ELP00551.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|444853132|gb|ELX78204.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444853682|gb|ELX78750.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444855949|gb|ELX80988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444864050|gb|ELX88860.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444866719|gb|ELX91439.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444871920|gb|ELX96307.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444876342|gb|ELY00518.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444882424|gb|ELY06390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 453
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|16759741|ref|NP_455358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142486|ref|NP_805828.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213163843|ref|ZP_03349553.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213424785|ref|ZP_03357535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213854569|ref|ZP_03382809.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|378960234|ref|YP_005217720.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|25385229|pir||AI0599 probable ATP-dependent RNA helicase rhlE STY0855 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502034|emb|CAD05267.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138117|gb|AAO69688.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|374354106|gb|AEZ45867.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
Length = 455
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|417356647|ref|ZP_12132146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353595575|gb|EHC52803.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
Length = 463
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|161614932|ref|YP_001588897.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168230715|ref|ZP_02655773.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168820033|ref|ZP_02832033.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194471685|ref|ZP_03077669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|200390413|ref|ZP_03217024.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|409249265|ref|YP_006885097.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
RNA-dependent helicase p72; DEAD box protein p72
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|161364296|gb|ABX68064.1| hypothetical protein SPAB_02686 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194458049|gb|EDX46888.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|199602858|gb|EDZ01404.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205334823|gb|EDZ21587.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205343118|gb|EDZ29882.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|320085093|emb|CBY94880.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
RNA-dependent helicase p72; DEAD box protein p72
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
Length = 454
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|62179387|ref|YP_215804.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|375113712|ref|ZP_09758882.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|62127020|gb|AAX64723.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322713858|gb|EFZ05429.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 453
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|445268473|ref|ZP_21410195.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 436]
gi|444888135|gb|ELY11755.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 436]
Length = 452
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|417381863|ref|ZP_12147999.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
gi|353616624|gb|EHC67835.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
Length = 397
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|417509372|ref|ZP_12174654.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
gi|353649195|gb|EHC91885.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
Length = 444
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|347541119|ref|YP_004848545.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
gi|345644298|dbj|BAK78131.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
Length = 455
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 97/150 (64%), Gaps = 6/150 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+L+ + ++GY PTPIQ K IPLVL GRD++A A+TG+GKTA F++P+LE+
Sbjct: 3 FAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
LK A+TS VRALILSPTRELA Q K+ L+ST + GG +MD Q
Sbjct: 63 LKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQTQ 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSI 182
L +I++ATPGR L V + ++L+ +
Sbjct: 123 ELRRGVEILIATPGRLLDHVGQKTVQLNKV 152
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
IPLVL GRD++A A+TG+GKTA F+ R +
Sbjct: 31 AIPLVLSGRDLLAAAQTGTGKTAAFMLPILERLKK 65
>gi|417340297|ref|ZP_12121649.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
gi|417527880|ref|ZP_12184955.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|353668359|gb|EHD05564.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|357959299|gb|EHJ83588.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
Length = 398
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|417412622|ref|ZP_12158261.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
gi|353626248|gb|EHC74832.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
Length = 406
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|238913888|ref|ZP_04657725.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 455
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|213620634|ref|ZP_03373417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 402
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|289811986|ref|ZP_06542615.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 293
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|380310508|gb|AFD53782.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Pullorum]
Length = 453
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|395763810|ref|ZP_10444479.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 515
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL E+ + + +GY PTPIQ + IP+VL+GRDV+ A+TG+GKTA F +P+++
Sbjct: 39 FADFGLAPEIQRALTDQGYTHPTPIQEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 98
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA++S VRALIL+PTRELA+Q + VK K T L+ST + GG M Q
Sbjct: 99 LMAHASSSMSPARHPVRALILTPTRELAVQVAENVKAYAKHTPLRSTVVFGGMDMKPQTV 158
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +IV+ATPGR L + + + LS +Q
Sbjct: 159 LLRGGVEIVIATPGRLLDHIEQKNISLSQVQ 189
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP+VL+GRDV+ A+TG+GKTA F
Sbjct: 63 IQEQAIPVVLQGRDVMGAAQTGTGKTAGF 91
>gi|393775871|ref|ZP_10364176.1| atp-dependent rna helicase [Ralstonia sp. PBA]
gi|392717127|gb|EIZ04696.1| atp-dependent rna helicase [Ralstonia sp. PBA]
Length = 507
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 101/151 (66%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F SFGL ++L+ + ++GY++ TPIQ + IP+V++GRDV+ A+TG+GKTA F +P++++
Sbjct: 11 FDSFGLHADILRAITEQGYRVATPIQAQAIPVVMQGRDVMGAAQTGTGKTAGFSLPIIQR 70
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRAL+L+PTRELA Q + V + K T L+ST + GG M+ Q A
Sbjct: 71 LLPFASTSTSPARHPVRALMLTPTRELADQVYDNVAKYAKHTALRSTVVFGGVDMNPQTA 130
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I+VATPGR L V + + LS +Q
Sbjct: 131 ELRRGVEILVATPGRLLDHVQQKTVNLSQVQ 161
>gi|213647600|ref|ZP_03377653.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 364
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|197265494|ref|ZP_03165568.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197243749|gb|EDY26369.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
Length = 453
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|431796129|ref|YP_007223033.1| DNA/RNA helicase [Echinicola vietnamensis DSM 17526]
gi|430786894|gb|AGA77023.1| DNA/RNA helicase, superfamily II [Echinicola vietnamensis DSM
17526]
Length = 453
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 98/146 (67%), Gaps = 1/146 (0%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F++F L ++L+ V + GY PTPIQ KTIPL L G+D++ +A+TG+GKTA +++P+L
Sbjct: 7 SFENFKLNKQLLEAVKEAGYTKPTPIQEKTIPLALAGQDILGIAQTGTGKTAAYVLPLLM 66
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
K K +A RALIL+PTREL +Q + + LGK+T L+ CL GG Q ++ A
Sbjct: 67 KTK-YAQGEHARALILAPTRELVIQIEQAILTLGKYTDLRYACLYGGVGPTPQIEKIRAG 125
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
DI++ATPGRF+ I + EL + +I+
Sbjct: 126 VDIIIATPGRFMDIYSKGELFVRNIK 151
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+ + TIPL L G+D++ +A+TG+GKTA ++
Sbjct: 32 IQEKTIPLALAGQDILGIAQTGTGKTAAYVL 62
>gi|417517052|ref|ZP_12179792.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353652558|gb|EHC94352.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
Length = 453
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|416771944|ref|ZP_11873090.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|323268735|gb|EGA52195.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 404
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
Length = 411
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 101/152 (66%), Gaps = 6/152 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL E+L+ + ++GY PTP+QR+ IP++L+ RDV+ A+TG+GKTA F +P+L++
Sbjct: 3 FEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQR 62
Query: 99 L------KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L +A +RALIL+PTRELA+Q F+ V+ GK+ L++T + GG S+ Q
Sbjct: 63 LFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQIN 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L DI+VATPGR L +V + L LS +++
Sbjct: 123 HLRRGVDILVATPGRLLDLVNQGVLNLSRVEF 154
>gi|308186129|ref|YP_003930260.1| ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
gi|308056639|gb|ADO08811.1| Putative ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
Length = 456
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+K
Sbjct: 3 FDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQK 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L A VRALIL+PTRELA Q + V + K+ L+S + GG S++ Q +L
Sbjct: 63 LSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSLVVFGGVSINPQMVKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + + LS ++
Sbjct: 123 RGGVDVLVATPGRLLDLAQQNAVDLSQVE 151
>gi|421887362|ref|ZP_16318522.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|379983078|emb|CCF90795.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
Length = 453
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNVRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 411
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 92/151 (60%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL E+LK + +GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRALIL+PTRELA Q V K T L+S + GG M+ Q A
Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L ++++ATPGR L V + L +Q
Sbjct: 133 ELRRGVEVLIATPGRLLDHVQQKTANLGQVQ 163
>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
Length = 408
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 92/151 (60%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL E+LK + +GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRALIL+PTRELA Q V K T L+S + GG M+ Q A
Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L ++++ATPGR L V + L +Q
Sbjct: 133 ELRRGVEVLIATPGRLLDHVQQKTANLGQVQ 163
>gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
Length = 465
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++ VL++GY+ PTPIQ + IP ++E RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSTGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|438073116|ref|ZP_20857214.1| ATP-dependent RNA helicase rhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|435310850|gb|ELO85184.1| ATP-dependent RNA helicase rhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
Length = 245
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|392538647|ref|ZP_10285784.1| ATP-dependent RNA helicase [Pseudoalteromonas marina mano4]
Length = 465
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++ VL++GY+ PTPIQ + IP ++E RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSTGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ FGL E+L+ + +GY PTPIQ IP+VL+GRDV+ A+TG+GKTA F +P+++
Sbjct: 18 FEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L +A+ S VRALIL+PTRELA Q + VK + T L+ST + GG M Q A
Sbjct: 78 LLANASNSASPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQTA 137
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L A +IV+ATPGR L V + L LS Q
Sbjct: 138 ALRAGVEIVIATPGRLLDHVQQKTLNLSQTQ 168
>gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
Length = 447
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LVTHQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
gi|215919015|ref|NP_819700.2| ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 493]
gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
Length = 420
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 101/152 (66%), Gaps = 6/152 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL E+L+ + ++GY PTP+QR+ IP++L+ RDV+ A+TG+GKTA F +P+L++
Sbjct: 12 FEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQR 71
Query: 99 L------KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L +A +RALIL+PTRELA+Q F+ V+ GK+ L++T + GG S+ Q
Sbjct: 72 LFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQIN 131
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L DI+VATPGR L +V + L LS +++
Sbjct: 132 HLRRGVDILVATPGRLLDLVNQGVLNLSRVEF 163
>gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311]
gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311]
Length = 426
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 97/150 (64%), Gaps = 4/150 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK + ++GY P+PIQ + IP V+ GRDV+A A+TG+GKTA F +PMLE
Sbjct: 16 GFDSLGLSQPLLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLPMLE 75
Query: 98 KLKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
+L H A G +RAL+L+PTRELA Q V+E K+ +L S + GG ++ Q RL
Sbjct: 76 RLN-HGARPGRLQIRALVLTPTRELAAQVLASVREYSKYLQLTSDVVFGGVKINPQIQRL 134
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQY 184
D++VATPGR L ++ + ++ +++
Sbjct: 135 QKGVDVLVATPGRLLDLLQQGAVRFDRVEF 164
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP V+ GRDV+A A+TG+GKTA F R + G
Sbjct: 45 AIPAVISGRDVMAAAQTGTGKTAGFTLPMLERLNHG 80
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 117/208 (56%), Gaps = 19/208 (9%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL +LK V ++GY P+PIQ+K IP VLEG+DV+A A+TG+GKTA F +PML
Sbjct: 3 FKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLHN 62
Query: 99 L--KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L VRAL+L+PTRELA Q + V+E K+ ++ST + GG + + Q +
Sbjct: 63 LIANPRQGRRKVRALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTIRQ 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY----------TFKFVKELGKFTKL---QSTCL 203
DI+VATPGR L + + L LS I++ F+ ++ K +L + L
Sbjct: 123 GVDILVATPGRLLDLENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQNL 182
Query: 204 LGGDSMDNQFARLHAS----PDIVVATP 227
L + + +L +S P +V ATP
Sbjct: 183 LFSATFNKDIKKLASSILTNPVLVEATP 210
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEG+DV+A A+TG+GKTA F
Sbjct: 27 IQQKAIPKVLEGKDVLASAQTGTGKTAGF 55
>gi|334130724|ref|ZP_08504514.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333444124|gb|EGK72080.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 480
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL E+L+ V GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P+L++
Sbjct: 3 FEELGLIPELLRAVADTGYTSPTPIQAQAIPVVLAGRDVMGGAQTGTGKTASFTLPLLQR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA +S VRALI+ PTRELA+Q + VK K L+S+C+ GG M Q A
Sbjct: 63 LAPHANSSPSPAKHPVRALIVCPTRELAMQVHESVKTYSKHLPLRSSCIYGGVDMKAQVA 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +IVVATPGR L V + L +Q
Sbjct: 123 ELREGREIVVATPGRLLDHVEGKTVNLGQVQ 153
>gi|50121729|ref|YP_050896.1| ATP-dependent RNA helicase RhlE [Pectobacterium atrosepticum
SCRI1043]
gi|49612255|emb|CAG75705.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
SCRI1043]
Length = 483
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 100/151 (66%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTP+QR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A + VRALIL+PTRELA Q + VK K+ L+S + GG S++ Q
Sbjct: 63 LTSREAQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQMM 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + + + LS I+
Sbjct: 123 KLRGGVDILVATPGRLLDLEHQRAVDLSQIE 153
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ D +G S +++ + Q R P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFDSLGLSADILRAIEEQGYRDPTPVQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
>gi|420369243|ref|ZP_14869968.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|391321569|gb|EIQ78292.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
Length = 447
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|416744018|ref|ZP_11856443.1| putative ATP-dependent RNA helicase rhlE, partial [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323258771|gb|EGA42428.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
Length = 221
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|452120973|ref|YP_007471221.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|451909977|gb|AGF81783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 453
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQLHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|224582633|ref|YP_002636431.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224467160|gb|ACN44990.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
Length = 488
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|437362299|ref|ZP_20748370.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435209837|gb|ELN93120.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
Length = 238
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|237751153|ref|ZP_04581633.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
gi|229373598|gb|EEO23989.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
Length = 518
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 93/143 (65%), Gaps = 4/143 (2%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
NT DK + F++ GL +VLKG+ + G+ P+PIQ K IP +LE RDV+A A+TG+G
Sbjct: 11 NTQDKLSALDS-FRALGLKDKVLKGIKEAGFTTPSPIQEKAIPPILERRDVIAQAQTGTG 69
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
KTA F +P+L LK S + AL+++PTRELA+Q V +LGKF K ++ C+ GG S
Sbjct: 70 KTAAFALPILHSLKND---SSIEALVITPTRELAMQISDEVFKLGKFLKTKTVCVYGGQS 126
Query: 147 MDNQFARLHASPDIVVATPGRFL 169
+ Q + P +++ATPGR L
Sbjct: 127 VKKQLELIEKKPQVLIATPGRLL 149
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP +LE RDV+A A+TG+GKTA F
Sbjct: 46 IQEKAIPPILERRDVIAQAQTGTGKTAAF 74
>gi|259909026|ref|YP_002649382.1| ATP-dependent RNA helicase RhlE [Erwinia pyrifoliae Ep1/96]
gi|387871953|ref|YP_005803329.1| ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM 12163]
gi|224964648|emb|CAX56162.1| Putative ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
gi|283479042|emb|CAY74958.1| putative ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM
12163]
Length = 471
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L +H VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LSSHNPHPKGRRPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + L LS ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNALDLSKVE 151
>gi|385303290|gb|EIF47375.1| putative dead box atp-dependent rna helicase [Dekkera bruxellensis
AWRI1499]
Length = 235
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 83/105 (79%)
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA FL+P++EKL+ H+ GVRA++LSPTRELA+QT++ + E K T ++S
Sbjct: 1 MARTGSGKTAAFLVPLIEKLRQHSPKIGVRAIVLSPTRELAIQTYRQLXEFSKGTGIRSL 60
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS+++QF+ + +PD V+ATPGR LH+ VEM L L +++Y
Sbjct: 61 LLVGGDSLEDQFSAMMDNPDAVIATPGRLLHLQVEMRLSLKTVEY 105
>gi|289825294|ref|ZP_06544573.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 215
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|292487709|ref|YP_003530582.1| ATP-dependent RNA helicase rhlE [Erwinia amylovora CFBP1430]
gi|292898944|ref|YP_003538313.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|428784645|ref|ZP_19002136.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
ACW56400]
gi|291198792|emb|CBJ45901.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|291553129|emb|CBA20174.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
CFBP1430]
gi|312171822|emb|CBX80079.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora ATCC
BAA-2158]
gi|426276207|gb|EKV53934.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
ACW56400]
Length = 470
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L +H VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LSSHNPHPKGRRPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + L LS ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNALDLSKVE 151
>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
14600]
gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
14600]
Length = 538
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++L + K GY+ PTP+Q ++IP++LEGRD++ A+TG+GKTA F +P+L K
Sbjct: 64 FSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHK 123
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L T VRAL+L+PTRELA+Q F K+ G++ L++ CL GG Q L
Sbjct: 124 L-TLLKRPRVRALVLTPTRELAIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIGALRRGA 182
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LSS++
Sbjct: 183 DILVATPGRLLDFMGQDLVDLSSVE 207
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
V +++IP++LEGRD++ A+TG+GKTA F +
Sbjct: 88 VQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHKL 124
>gi|381405224|ref|ZP_09929908.1| ATP-dependent RNA helicase RhlE [Pantoea sp. Sc1]
gi|380738423|gb|EIB99486.1| ATP-dependent RNA helicase RhlE [Pantoea sp. Sc1]
Length = 453
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+LEK
Sbjct: 3 FDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLEK 62
Query: 99 LK-THAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T G VRALIL+PTRELA Q + V + K+ L+S + GG S++ Q +L
Sbjct: 63 LSATTTPVRGRRPVRALILTPTRELAAQVGENVSDYSKYLPLRSMVVFGGVSINPQMVKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + + LS ++
Sbjct: 123 RGGVDVLVATPGRLLDLAHQNAVDLSKVE 151
>gi|417539031|ref|ZP_12191433.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
gi|353665295|gb|EHD03472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
Length = 453
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V+ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRAYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|384258953|ref|YP_005402887.1| ATP-dependent RNA helicase RhlE [Rahnella aquatilis HX2]
gi|380754929|gb|AFE59320.1| ATP-dependent RNA helicase RhlE [Rahnella aquatilis HX2]
Length = 469
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ V ++GY+ PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +P+L
Sbjct: 3 FDSLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLNM 62
Query: 99 LK-THAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T+A G VRALIL+PTRELA Q + V+ K+ L+S + GG S++ Q +L
Sbjct: 63 LSHTNAQFKGRRPVRALILTPTRELAAQIGENVQAYSKYLTLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + + LS ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQRAVDLSQVE 151
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ D +G S E++ + Q R+ P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFDSLGLSAEILRAVEEQGYREPTPIQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
>gi|322833775|ref|YP_004213802.1| DEAD/DEAH box helicase [Rahnella sp. Y9602]
gi|321168976|gb|ADW74675.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
Length = 470
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ V ++GY+ PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +P+L
Sbjct: 3 FDSLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLNM 62
Query: 99 LK-THAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T+A G VRALIL+PTRELA Q + V+ K+ L+S + GG S++ Q +L
Sbjct: 63 LSHTNAQFKGRRPVRALILTPTRELAAQIGENVQAYSKYLTLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + + LS ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQRAVDLSQVE 151
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ D +G S E++ + Q R+ P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFDSLGLSAEILRAVEEQGYREPTPIQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
>gi|437943439|ref|ZP_20851724.1| ATP-dependent RNA helicase rhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|435308445|gb|ELO83395.1| ATP-dependent RNA helicase rhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
Length = 166
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|385787804|ref|YP_005818913.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617]
gi|310767076|gb|ADP12026.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617]
Length = 469
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L +H VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LSSHNPHPKGRRPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + L LS ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNALDLSKVE 151
>gi|428671631|gb|EKX72549.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 773
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 103/159 (64%), Gaps = 5/159 (3%)
Query: 31 KKKKMGGGFQSFG-LGF-EVLKGVLKRG--YKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
KKK GGG +FG LG + L L+R YK P+ IQRKTIPLVL+ DVV +ARTGSG
Sbjct: 15 KKKNPGGGTGAFGVLGLNKSLCLTLERKFRYKQPSAIQRKTIPLVLKRTDVVCIARTGSG 74
Query: 87 KTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE-LGKFTKLQSTCLLGGD 145
KT +L P+++ L H+ T G R L+L P+RELALQ VK+ +GK L+ L+GG
Sbjct: 75 KTIAYLAPIIQLLDVHSTTVGSRCLVLLPSRELALQVASVVKKFVGKTDGLRHATLIGGQ 134
Query: 146 SMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+++ QF L +PDIV+ATPGR +VE +S +++
Sbjct: 135 ALETQFGSLAFNPDIVIATPGRLSQHLVEKSFDMSLLEH 173
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
TIPLVL+ DVV +ARTGSGKT +L
Sbjct: 55 TIPLVLKRTDVVCIARTGSGKTIAYL 80
>gi|383190938|ref|YP_005201066.1| DNA/RNA helicase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371589196|gb|AEX52926.1| DNA/RNA helicase, superfamily II [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 469
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ V ++GY+ PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +P+L
Sbjct: 3 FDSLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLNM 62
Query: 99 LK-THAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T+A G VRALIL+PTRELA Q + V+ K+ L+S + GG S++ Q +L
Sbjct: 63 LSHTNAQFKGRRPVRALILTPTRELAAQIGENVQAYSKYLTLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + + LS ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQRAVDLSQVE 151
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ D +G S E++ + Q R+ P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFDSLGLSAEILRAVEEQGYREPTPIQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
>gi|359451210|ref|ZP_09240620.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
gi|358042989|dbj|GAA76869.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
Length = 438
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++ VL++GY+ PTPIQ + IP ++E RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSTGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 511
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 29 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 88
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A+TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 89 LPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVD 148
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 149 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 185
>gi|300715940|ref|YP_003740743.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
gi|299061776|emb|CAX58892.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
Length = 480
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNADILRAVAEQGYDEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPVLQL 62
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L +H VRALIL+PTRELA Q + V++ K+ L+S + GG S++ Q +L
Sbjct: 63 LSSHNPHPKGRRPVRALILTPTRELAAQIGENVQDYSKYLDLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ D++VATPGR L + + L LS ++
Sbjct: 123 RSGVDVLVATPGRLLDLEHQNALDLSKVE 151
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ L+S + GG S++ Q +L + D++VATPGR L + + L LS +++ +
Sbjct: 95 VQDYSKYLDLRSLVVFGGVSINPQMMKLRSGVDVLVATPGRLLDLEHQNALDLSKVEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
>gi|365969640|ref|YP_004951201.1| ATP-dependent RNA helicase rhlE [Enterobacter cloacae EcWSU1]
gi|365748553|gb|AEW72780.1| ATP-dependent RNA helicase rhlE [Enterobacter cloacae EcWSU1]
Length = 460
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE- 97
F S GL E+L+ + ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+LE
Sbjct: 3 FDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62
Query: 98 --KLKTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
K + HA VRALIL+PTRELA Q + V+E ++ ++S + GG S++ Q +L
Sbjct: 63 LVKNQPHAKGRRPVRALILTPTRELAAQIGENVREYSRYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + LKL SI+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNALKLDSIE 151
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|188534378|ref|YP_001908175.1| ATP-dependent RNA helicase RhlE [Erwinia tasmaniensis Et1/99]
gi|188029420|emb|CAO97297.1| Putative ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
Length = 468
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L +H VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LSSHNPHPKGRRPVRALILTPTRELAAQIGENVQDYSKYLDMRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + L LS ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNALDLSQVE 151
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L D++VATPGR L + + L LS +++ +
Sbjct: 95 VQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNALDLSQVEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
>gi|448241070|ref|YP_007405123.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
gi|445211434|gb|AGE17104.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
Length = 459
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+++ V ++GY+ PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H VRALIL+PTRELA Q + V K +L+S + GG S++ Q +L
Sbjct: 63 LSKHDHPVKGRRPVRALILTPTRELAAQIGENVDAYSKHLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS I+
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSKIE 151
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ + +G S E++ + Q R+ P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFETLGLSAEIVRAVEEQGYREPTPIQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V K +L+S + GG S++ Q +L DI+VATPGR L + + + LS I++ +
Sbjct: 95 VDAYSKHLRLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
>gi|405118285|gb|AFR93059.1| DEAD box RNA helicase [Cryptococcus neoformans var. grubii H99]
Length = 803
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 31/199 (15%)
Query: 15 PTVTISSNDDNGNTGDKKKKMGGGFQSF-----GLGFEVLKGVLKRGYKIPTPIQRKTIP 69
P+ + + D G +K GG +++ +G ++++ +L R +K PTPIQR IP
Sbjct: 6 PSWALETTAD-GEVKEKTSGPGGQWRALTHTRTDVGPDLIRSLLMRKFKSPTPIQRAAIP 64
Query: 70 LVLE--GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127
L RD++ MARTGSGKT +LIP+L+K + G RALIL P+RELA+Q +
Sbjct: 65 PALSTPPRDILGMARTGSGKTLAYLIPLLQKTGSTHHGQGPRALILCPSRELAVQIYTVG 124
Query: 128 KELGK-----------------------FTKLQSTCLLGGDSMDNQFARLHASPDIVVAT 164
K+L + L+ ++GG+ MD QF ++ ++PDIV+AT
Sbjct: 125 KDLARGMNKGKGKEKNKAEGEEDEEGKGKEGLRWAVIIGGEGMDAQFEKMSSNPDIVIAT 184
Query: 165 PGRFLHIVVEMELKLSSIQ 183
PGRFLH++VEM + L +Q
Sbjct: 185 PGRFLHLIVEMHMDLRHLQ 203
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 198 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
L+ ++GG+ MD QF ++ ++PDIV+ATPGRFLH++VEM + L +Q + D
Sbjct: 156 LRWAVIIGGEGMDAQFEKMSSNPDIVIATPGRFLHLIVEMHMDLRHLQTVIYD 208
>gi|453062686|gb|EMF03676.1| ATP-dependent RNA helicase RhlE [Serratia marcescens VGH107]
Length = 457
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+++ V ++GY+ PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H VRALIL+PTRELA Q + V K +L+S + GG S++ Q +L
Sbjct: 63 LSKHDHPVKGRRPVRALILTPTRELAAQIGENVDAYSKHLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS I+
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSKIE 151
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ + +G S E++ + Q R+ P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFETLGLSAEIVRAVEEQGYREPTPIQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V K +L+S + GG S++ Q +L DI+VATPGR L + + + LS I++ +
Sbjct: 95 VDAYSKHLRLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
>gi|330846058|ref|XP_003294872.1| hypothetical protein DICPUDRAFT_93301 [Dictyostelium purpureum]
gi|325074579|gb|EGC28605.1| hypothetical protein DICPUDRAFT_93301 [Dictyostelium purpureum]
Length = 413
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D+ T D G F L ++L+G+ ++GY P+PIQ K IP+ L GRD++A A+
Sbjct: 25 DERRQTEDVTATEGNEFDDLHLKRDLLRGIFEKGYVRPSPIQEKAIPIALAGRDIMARAK 84
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA FLIP LE KT ++ LIL PTRELALQT + KELGK+ +Q
Sbjct: 85 NGTGKTASFLIPALE--KTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMAST 142
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
GG S+ + RL++ I+VATPGR L + + LS+ Q
Sbjct: 143 GGTSLKDDIMRLYSPVHILVATPGRVLDLAQKNVANLSNCQ 183
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 264 GDSTEMIHKQRQSVRKWDPAKKKYVQ---VTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
G+ + +H +R +R +K YV+ + + IP+ L GRD++A A+ G+GKTA FL
Sbjct: 38 GNEFDDLHLKRDLLRGI--FEKGYVRPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLI 95
>gi|186683738|ref|YP_001866934.1| DEAD/DEAH box helicase [Nostoc punctiforme PCC 73102]
gi|186466190|gb|ACC81991.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
73102]
Length = 443
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 97/153 (63%), Gaps = 7/153 (4%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F + GL E+++ V +RGY PTPIQR+ IP VL G D++A A+TG+GKTA F +P+L
Sbjct: 2 NFSTLGLSNEIIRAVTERGYTEPTPIQRQAIPAVLSGSDLLAGAQTGTGKTASFTLPLLH 61
Query: 98 KL---KTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
+L K TS +RALIL+PTRELA Q + V+E GK+ +L S + GG ++ Q
Sbjct: 62 RLSSEKNVKVTSNGYRPIRALILTPTRELAAQVEESVREYGKYLQLNSMVMFGGVGINLQ 121
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
RL DI+VATPGR L V + L LS I+
Sbjct: 122 KQRLKNRVDILVATPGRLLDHVQQGTLNLSHIE 154
>gi|317052319|ref|YP_004113435.1| DEAD/DEAH box helicase domain-containing protein
[Desulfurispirillum indicum S5]
gi|316947403|gb|ADU66879.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
S5]
Length = 457
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL +L+ V GY PTP+Q++ IP +L+GRD+ A A+TG+GKTA F +PMLE
Sbjct: 3 FSDLGLSAPILRAVAAEGYTQPTPVQQQAIPAILQGRDIQAGAQTGTGKTAGFTLPMLEI 62
Query: 99 LKTHA--ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L+ A VRALIL+PTRELA Q + V+ GK L+S + GG +M Q A L
Sbjct: 63 LERQAIRGRRHVRALILTPTRELAAQVEESVRTYGKHLSLKSAVIFGGVAMGPQLANLRR 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY 184
DIVVATPGR L V + + LS +++
Sbjct: 123 GVDIVVATPGRLLDHVQQKSIDLSKVEF 150
>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 571
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 81 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 140
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A+TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 141 LPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVD 200
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 201 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 237
>gi|261822185|ref|YP_003260291.1| ATP-dependent RNA helicase RhlE [Pectobacterium wasabiae WPP163]
gi|261606198|gb|ACX88684.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
WPP163]
gi|385872484|gb|AFI91004.1| Putative ATP-dependent RNA helicase RhlE [Pectobacterium sp.
SCC3193]
Length = 476
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTP+QR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A VRALIL+PTRELA Q + VK K+ L+S + GG S++ Q
Sbjct: 63 LTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQMM 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + + + LS I+
Sbjct: 123 KLRGGVDILVATPGRLLDLEHQRAVDLSQIE 153
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ D +G S +++ + Q R P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFDSLGLSADILRAIEEQGYRDPTPVQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
>gi|241766307|ref|ZP_04764197.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241363561|gb|EER58995.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 448
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L +LK V + GY+ PTPIQ + IP VLEG D++A A+TG+GKTA F +PML +
Sbjct: 3 FEELNLAPAILKAVQETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A G+RAL+L+PTRELA Q + V+E GK+ + ST + GG M+ Q
Sbjct: 63 LSQGTAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQID 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ DI+VATPGR L + + L LS+++
Sbjct: 123 RIKRGVDILVATPGRLLDLQQQGFLDLSTVE 153
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+ IP VLEG D++A A+TG+GKTA F R +G
Sbjct: 27 IQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPMLHRLSQG 66
>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 497
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A+TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|421081610|ref|ZP_15542520.1| ATP-dependent RNA helicase RhlE-like protein [Pectobacterium
wasabiae CFBP 3304]
gi|401703699|gb|EJS93912.1| ATP-dependent RNA helicase RhlE-like protein [Pectobacterium
wasabiae CFBP 3304]
Length = 480
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTP+QR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A VRALIL+PTRELA Q + VK K+ L+S + GG S++ Q
Sbjct: 63 LTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQMM 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + + + LS I+
Sbjct: 123 KLRGGVDILVATPGRLLDLEHQRAVDLSQIE 153
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ D +G S +++ + Q R P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFDSLGLSADILRAIEEQGYRDPTPVQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
>gi|365848675|ref|ZP_09389147.1| ATP-dependent RNA helicase RhlE [Yokenella regensburgei ATCC 43003]
gi|364570255|gb|EHM47873.1| ATP-dependent RNA helicase RhlE [Yokenella regensburgei ATCC 43003]
Length = 450
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+L+ V ++GY+ PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDTLGLNPEILRAVAEQGYREPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA +RALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LISREPHAKGRRPIRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + LKL SI+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNALKLDSIE 151
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L D++VATPGR L + + LKL SI++ +
Sbjct: 95 VRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNALKLDSIEVLV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
>gi|192362464|ref|YP_001982184.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
gi|190688629|gb|ACE86307.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
Length = 474
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++L+ + GY PTPIQ++ IP V+ G D++A A+TG+GKTA F +P+LEK
Sbjct: 3 FESLGLRADILRAIADEGYSAPTPIQQQAIPAVINGGDILAAAQTGTGKTAGFTLPLLEK 62
Query: 99 L------KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L KT VRALIL+PTRELA Q V+ GK+ +L+S + GG S++ Q
Sbjct: 63 LSQRDPGKTPQGRRPVRALILTPTRELAAQVHDSVRTYGKYLRLRSAVVFGGVSINPQMM 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L DI+VATPGR L +V + + L ++
Sbjct: 123 TLRGGVDILVATPGRLLDLVNQNAVYLQDVE 153
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V+ GK+ +L+S + GG S++ Q L DI+VATPGR L +V + + L +++ +
Sbjct: 97 VRTYGKYLRLRSAVVFGGVSINPQMMTLRGGVDILVATPGRLLDLVNQNAVYLQDVEILV 156
Query: 249 TD 250
D
Sbjct: 157 LD 158
>gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032]
gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis
z3032]
Length = 500
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ + ++GY PTPIQR+ IP+VL G+D++A A+TG+GKTA F +P+L++
Sbjct: 5 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 64
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L A + VRALIL+PTRELA Q + V+E K+ ++S + GG S++ Q +L
Sbjct: 65 LTAKAPHAQGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 124
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ D+++ATPGR L + + +KL ++
Sbjct: 125 RSGVDVLIATPGRLLDLEHQNAVKLDQVE 153
>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 441
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+L+ + ++GY PTPIQ K IPLVL GRD++A A+TG+GKTA F++P+LE+
Sbjct: 3 FSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
LK A TS +RAL+LSPTRELA Q V+ K+ L++T + GG +MD Q
Sbjct: 63 LKKFANTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKYLPLRATTVFGGVNMDPQTQ 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L + + ++L+ ++
Sbjct: 123 ELRRGVEILIATPGRLLDHIQQKTVQLNKVE 153
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
+ + IPLVL GRD++A A+TG+GKTA F+ R +
Sbjct: 27 IQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILERLKK 65
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 17/98 (17%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V+ K+ L++T + GG +MD Q L +I++ATPGR L + + ++L+ +++ +
Sbjct: 97 VQTYTKYLPLRATTVFGGVNMDPQTQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLV 156
Query: 249 TD---------FKQDTSRIALDLVGDSTEMIHKQRQSV 277
D F QD +I M+ K+RQ++
Sbjct: 157 LDEGDRMLDMGFIQDIRKI--------MGMLPKERQTL 186
>gi|291277508|ref|YP_003517280.1| DEAD box helicase [Helicobacter mustelae 12198]
gi|290964702|emb|CBG40557.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
Length = 513
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 95/146 (65%), Gaps = 8/146 (5%)
Query: 29 GDKKKKMGG-----GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMART 83
+KK M G GF++ GL VLKGVL G+++PTPIQ + IP +L+ RDV+A A+T
Sbjct: 4 NNKKNNMTGVLDAEGFENLGLSKTVLKGVLDAGFRMPTPIQEQAIPAILQERDVIAQAQT 63
Query: 84 GSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLG 143
G+GKTA F +P+LE L + + + ALI++PTREL +Q + +LG+ +++ C+ G
Sbjct: 64 GTGKTAAFTLPILEMLHHNQS---IEALIITPTRELTMQVSDEIYKLGRPKNIKTVCVYG 120
Query: 144 GDSMDNQFARLHASPDIVVATPGRFL 169
G S+ Q L +P I+VATPGR L
Sbjct: 121 GQSIKRQCELLAKNPQIMVATPGRLL 146
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP +L+ RDV+A A+TG+GKTA F
Sbjct: 43 IQEQAIPAILQERDVIAQAQTGTGKTAAF 71
>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
Length = 526
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VL+G+DV+A A+TG+GKTA F +PMLE
Sbjct: 14 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLEL 73
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K + A +G VRAL+L+PTRELA Q + V+ GK L+S + GG ++ Q A+L
Sbjct: 74 LSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH 133
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K S ++
Sbjct: 134 GVDVLVATPGRLMDLYNQKAVKFSQLE 160
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP VL+G+DV+A A+TG+GKTA F +GN
Sbjct: 42 AIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 78
>gi|395233486|ref|ZP_10411726.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. Ag1]
gi|394732213|gb|EJF31920.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. Ag1]
Length = 465
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNADILRAVEEQGYREPTPIQRQAIPVVLSGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L A VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LTDSAPHLKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L D++VATPGR L + + +KL I++ +
Sbjct: 95 VRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
>gi|373950799|ref|ZP_09610760.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323368|ref|YP_006019485.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817513|gb|AEG10179.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887399|gb|EHQ16291.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 515
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VL+G+DV+A A+TG+GKTA F +PMLE
Sbjct: 3 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLEL 62
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K + A +G VRAL+L+PTRELA Q + V+ GK L+S + GG ++ Q A+L
Sbjct: 63 LSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K S ++
Sbjct: 123 GVDVLVATPGRLMDLYNQKAVKFSQLE 149
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP VL+G+DV+A A+TG+GKTA F +GN
Sbjct: 31 AIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 67
>gi|386342411|ref|YP_006038777.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|334864812|gb|AEH15283.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 515
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VL+G+DV+A A+TG+GKTA F +PMLE
Sbjct: 3 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLEL 62
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K + A +G VRAL+L+PTRELA Q + V+ GK L+S + GG ++ Q A+L
Sbjct: 63 LSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K S ++
Sbjct: 123 GVDVLVATPGRLMDLYNQKAVKFSQLE 149
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP VL+G+DV+A A+TG+GKTA F +GN
Sbjct: 31 AIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 67
>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
Length = 515
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VL+G+DV+A A+TG+GKTA F +PMLE
Sbjct: 3 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLEL 62
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K + A +G VRAL+L+PTRELA Q + V+ GK L+S + GG ++ Q A+L
Sbjct: 63 LSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K S ++
Sbjct: 123 GVDVLVATPGRLMDLYNQKAVKFSQLE 149
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP VL+G+DV+A A+TG+GKTA F +GN
Sbjct: 31 AIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 67
>gi|398808043|ref|ZP_10566913.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
gi|398088674|gb|EJL79232.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
Length = 600
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +LK V + GY PTPIQ + IP VLEG D++ A+TG+GKTA F +PML K
Sbjct: 3 FDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLHK 62
Query: 99 LK-THAAT-----SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + +AT +G+RAL+L+PTRELA Q + V+ GK+ +L ST + GG M+ Q +
Sbjct: 63 LSMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQIS 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + + L LS +Q
Sbjct: 123 KLKKGVDILVATPGRLLDLQQQGMLDLSQVQ 153
>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
Length = 525
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VL+G+DV+A A+TG+GKTA F +PMLE
Sbjct: 14 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLEL 73
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K + A +G VRAL+L+PTRELA Q + V+ GK L+S + GG ++ Q A+L
Sbjct: 74 LSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH 133
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K S ++
Sbjct: 134 GVDVLVATPGRLMDLYNQKAVKFSQLE 160
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP VL+G+DV+A A+TG+GKTA F +GN
Sbjct: 42 AIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 78
>gi|344939864|ref|ZP_08779152.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344261056|gb|EGW21327.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 441
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 94/149 (63%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+LK V +GY PTP+Q+K IPL+LEG+DV+A A+TG+GKTA F +P+L++
Sbjct: 3 FAQLGLADELLKAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLLQR 62
Query: 99 LKT----HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H VRALIL PTRELA Q ++ VK G + ++GG S+ Q +L
Sbjct: 63 LAENHDPHQKPRRVRALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQTRQL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DIVVATPGR + V + + LS+++
Sbjct: 123 RRGCDIVVATPGRLIDHVQQRNINLSNVE 151
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
V IPL+LEG+DV+A A+TG+GKTA F R
Sbjct: 27 VQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLLQRL 63
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 186 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 245
++ VK G + ++GG S+ Q +L DIVVATPGR + V + + LS+++
Sbjct: 92 YESVKTYGAHLPFHAEAVVGGASIGIQTRQLRRGCDIVVATPGRLIDHVQQRNINLSNVE 151
Query: 246 LSLTDFKQDTSRIALDL-----VGDSTEMIHKQRQSV 277
+ + D + R+ LD+ + +I K+RQS+
Sbjct: 152 VLVLD---EADRM-LDMGFLPDIKQLMALIPKKRQSL 184
>gi|378707268|ref|YP_005272162.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|418024343|ref|ZP_12663326.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|353536303|gb|EHC05862.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 514
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VL+G+DV+A A+TG+GKTA F +PMLE
Sbjct: 3 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLEL 62
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K + A +G VRAL+L+PTRELA Q + V+ GK L+S + GG ++ Q A+L
Sbjct: 63 LSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K S ++
Sbjct: 123 GVDVLVATPGRLMDLYNQKAVKFSQLE 149
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP VL+G+DV+A A+TG+GKTA F +GN
Sbjct: 31 AIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 67
>gi|406911902|gb|EKD51608.1| hypothetical protein ACD_62C00220G0002 [uncultured bacterium]
Length = 421
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 95/148 (64%), Gaps = 4/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+L+ V +GY +PTPIQ K IPL+L +D++ A+TG+GKTA F +P+L++
Sbjct: 3 FENLGLSPELLQAVQGQGYSVPTPIQTKAIPLILNKQDILGSAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L G +RALIL+PTRELA Q K V+ GK L+ST + GG +M+ Q RL
Sbjct: 63 LMLEKKNGGGKRHIRALILTPTRELAAQVCKSVETYGKHLPLRSTVVFGGVNMEAQVRRL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSI 182
DIVVATPGR L + + + LS +
Sbjct: 123 QYGVDIVVATPGRLLDHIGQRTIDLSRV 150
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 187 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQL 246
K V+ GK L+ST + GG +M+ Q RL DIVVATPGR L + + + LS + +
Sbjct: 93 KSVETYGKHLPLRSTVVFGGVNMEAQVRRLQYGVDIVVATPGRLLDHIGQRTIDLSRVDV 152
Query: 247 SLTD 250
+ D
Sbjct: 153 LILD 156
>gi|427702007|ref|YP_007045229.1| DNA/RNA helicase [Cyanobium gracile PCC 6307]
gi|427345175|gb|AFY27888.1| DNA/RNA helicase, superfamily II [Cyanobium gracile PCC 6307]
Length = 420
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL +LK V +GY P+PIQR+ IP VL G DV+A A+TG+GKTA F +PMLE+
Sbjct: 8 FAVLGLSEPILKAVAAKGYSSPSPIQRQCIPAVLAGHDVMAAAQTGTGKTAGFTLPMLER 67
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L+ HA VRAL+L+PTRELA Q V G++ L+S + GG S + Q RL
Sbjct: 68 LRHGPHARAGVVRALVLTPTRELAAQVADSVTAYGRYLDLRSDVVFGGVSANPQMQRLRR 127
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + L+L ++
Sbjct: 128 GADVLVATPGRLMDLHQQNALRLDRVE 154
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V G++ L+S + GG S + Q RL D++VATPGR + + + L+L +++ +
Sbjct: 98 VTAYGRYLDLRSDVVFGGVSANPQMQRLRRGADVLVATPGRLMDLHQQNALRLDRVEILV 157
Query: 249 TD 250
D
Sbjct: 158 LD 159
>gi|283784562|ref|YP_003364427.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
gi|282948016|emb|CBG87580.1| putative ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
Length = 451
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ + ++GY+ PTP+Q++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPEILRAIAEQGYREPTPVQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITQQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
V IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 VQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|319794896|ref|YP_004156536.1| dead/deah box helicase domain-containing protein [Variovorax
paradoxus EPS]
gi|315597359|gb|ADU38425.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
Length = 605
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +LK V + GY PTPIQ + IP VLEG D++ A+TG+GKTA F +PML K
Sbjct: 3 FDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLHK 62
Query: 99 LK-THAATS-----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + +AT+ G+RAL+L+PTRELA Q + V+ GK+ +L ST + GG M+ Q +
Sbjct: 63 LTMSRSATNKFGGVGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQIS 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + + L LS +Q
Sbjct: 123 KLKKGVDILVATPGRLLDLQQQGMLDLSQVQ 153
>gi|339482299|ref|YP_004694085.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804444|gb|AEJ00686.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 493
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++++ + +GY PTPIQ + IP++L+G DV+ A+TG+GKTA F +PML +
Sbjct: 3 FEQLGLSTDLMRAISDQGYTKPTPIQEQAIPIILDGNDVMGGAQTGTGKTASFTLPMLRR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L+ +A TS +RALIL PTRELA+Q + VK GK+ L+ST + GG ++D Q
Sbjct: 63 LEIYANTSMSPAKHPIRALILVPTRELAVQVHESVKTYGKYLPLRSTVIYGGVNIDAQIN 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ + +I+VATPGR L + + L LS I+
Sbjct: 123 AVRSGIEILVATPGRLLDHLQQKTLGLSKIE 153
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 281 DPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
D K + + IP++L+G DV+ A+TG+GKTA F R +
Sbjct: 18 DQGYTKPTPIQEQAIPIILDGNDVMGGAQTGTGKTASFTLPMLRRLE 64
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 93/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+L+ + ++GY PTPIQ IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL +L+ + +GY PTPIQ + IP++L+GRDV+ A+TG+GKTA F +P+++
Sbjct: 67 FADFGLSPHILRALTDQGYVHPTPIQAQAIPVLLQGRDVMGAAQTGTGKTAGFALPIIQM 126
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+TS VRALIL+PTRELA+Q + VK + T L+ST + GG M Q
Sbjct: 127 LLAHASTSTSPARHPVRALILTPTRELAVQVAENVKAYAQHTPLRSTVVFGGMDMKGQTV 186
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L A +IV+ATPGR L V + + L +Q
Sbjct: 187 ILKAGVEIVIATPGRLLDHVEQKNISLGQVQ 217
>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
Length = 525
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VL+G+DV+A A+TG+GKTA F +PMLE
Sbjct: 14 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLEL 73
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K + A +G VRAL+L+PTRELA Q + V+ GK L+S + GG ++ Q A+L
Sbjct: 74 LSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH 133
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K S ++
Sbjct: 134 GVDVLVATPGRLMDLYNQKAVKFSQLE 160
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP VL+G+DV+A A+TG+GKTA F +GN
Sbjct: 42 AIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 78
>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 571
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 81 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 140
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A+TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 141 LPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVD 200
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 201 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 237
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK V + GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 39 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 98
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q
Sbjct: 99 LLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSD 158
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I++ATPGR L V + L +Q
Sbjct: 159 QLRRGVEILIATPGRLLDHVQQKTANLGQVQ 189
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 93/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 29 KPADANFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 88
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 89 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 148
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 149 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 185
>gi|395227497|ref|ZP_10405823.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|421844472|ref|ZP_16277630.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424728799|ref|ZP_18157404.1| atp-dependent rna helicase [Citrobacter sp. L17]
gi|394718825|gb|EJF24446.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|411774627|gb|EKS58117.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422896670|gb|EKU36452.1| atp-dependent rna helicase [Citrobacter sp. L17]
Length = 448
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T+ + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITNQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|455643914|gb|EMF23035.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii GTC 09479]
Length = 448
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T+ + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITNQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|334122768|ref|ZP_08496804.1| ATP-dependent RNA helicase RhlE [Enterobacter hormaechei ATCC
49162]
gi|333391883|gb|EGK62992.1| ATP-dependent RNA helicase RhlE [Enterobacter hormaechei ATCC
49162]
Length = 460
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE- 97
F S GL E+L+ + ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+LE
Sbjct: 3 FDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62
Query: 98 --KLKTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
K + HA VRALIL+PTRELA Q + V+E ++ ++S + GG S++ Q +L
Sbjct: 63 LVKNQPHAKGRRPVRALILTPTRELAAQIGENVREYSRYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL SI+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDSIE 151
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A +S VRALIL+PTRELA Q V K T L+S + GG M++Q A
Sbjct: 73 LLPQANSSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNSQMA 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L V + L +Q
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
Length = 457
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 97/148 (65%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL +LK + +GY PTPIQ++ IP+V+EG+DV+A A+TG+GKTA F +P+LE+
Sbjct: 3 FTNLGLNESLLKAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLER 62
Query: 99 L-KTHA--ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L +TH +R L+L+PTRELA Q + +K GK+ K ST + GG ++ Q A +
Sbjct: 63 LSETHPKMGKKQIRVLVLTPTRELAAQVAESIKTYGKYMKYTSTVVYGGVGINPQLATIR 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DIV+ATPGR L I + + S+++
Sbjct: 123 RGVDIVIATPGRLLDIAGQQGIDFSALE 150
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
+K GK+ K ST + GG ++ Q A + DIV+ATPGR L I + + S+++ +
Sbjct: 94 IKTYGKYMKYTSTVVYGGVGINPQLATIRRGVDIVIATPGRLLDIAGQQGIDFSALETLV 153
Query: 249 TD 250
D
Sbjct: 154 LD 155
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ IP+V+EG+DV+A A+TG+GKTA F R
Sbjct: 27 IQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLERL 63
>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
DSM 3043]
Length = 452
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 88/133 (66%), Gaps = 2/133 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +L V ++GY+ P+PIQ K IP VLEGRDV+A A+TG+GKTA F +P+LE+
Sbjct: 3 FTSLGLSAPILDAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPILER 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T A VRALIL+PTRELA Q ++ GK L+S + GG ++ Q A+L
Sbjct: 63 LAAGTRAPGKQVRALILTPTRELAAQIGANIEAYGKHLPLRSAVVFGGVKINPQIAKLRG 122
Query: 157 SPDIVVATPGRFL 169
DI+VATPGR L
Sbjct: 123 GVDILVATPGRLL 135
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP VLEGRDV+A A+TG+GKTA F R G
Sbjct: 31 AIPAVLEGRDVMAAAQTGTGKTAGFTLPILERLAAG 66
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 231
++ GK L+S + GG ++ Q A+L DI+VATPGR L
Sbjct: 93 IEAYGKHLPLRSAVVFGGVKINPQIAKLRGGVDILVATPGRLL 135
>gi|365105460|ref|ZP_09334707.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
gi|363643475|gb|EHL82793.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
Length = 448
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T+ + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITNQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|351729711|ref|ZP_08947402.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 617
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +LK V + GY+ PTPIQ + IP VL G D++A A+TG+GKTA F +P+L +
Sbjct: 9 FDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPLLHR 68
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L AA G+RAL+L+PTRELA Q + V+E GK+ + ST + GG M+ Q
Sbjct: 69 LSQSAAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQID 128
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ DI+VATPGR L + + L LS++Q
Sbjct: 129 RIKRGVDILVATPGRLLDLQQQGFLDLSTVQ 159
>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
Length = 448
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T+ + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITNQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|290989740|ref|XP_002677495.1| dead box ATP-dependent RNA helicase [Naegleria gruberi]
gi|284091103|gb|EFC44751.1| dead box ATP-dependent RNA helicase [Naegleria gruberi]
Length = 618
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 17 VTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD 76
+++ DD T D G F+ FGL E+L G+ ++G++ P+PIQ +T+PL L GRD
Sbjct: 224 LSLPPRDDRMQTEDVTLTKGSDFEEFGLKRELLMGIFEKGFERPSPIQEQTVPLALFGRD 283
Query: 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136
++A A+ G+GKTA F+IP LE++ T + + ++ LIL PTRELALQT KE+GK+ +
Sbjct: 284 ILARAKNGTGKTAAFIIPCLERVDT--SKNQIQILILVPTRELALQTSHVCKEIGKYLNV 341
Query: 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171
+ GG S+ + RL+ I+V TPGR + +
Sbjct: 342 EVMVTTGGTSLKDDIVRLYKPVHILVGTPGRIIDL 376
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 197 KLQSTCLLGGDSMDNQFARL--HASPDIVVATPGRFLHIVVEMELKLSSIQLSLTDFKQD 254
KL + ++GG ++ + L H ++ +A +V+ EL + L D +
Sbjct: 181 KLSYSAIVGGQTVTDDINELDTHKPSNLAIAKE------LVQDELWKDKLSLPPRDDRMQ 234
Query: 255 TSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGK 314
T + L D E K+ + ++ ++ + + T+PL L GRD++A A+ G+GK
Sbjct: 235 TEDVTLTKGSDFEEFGLKRELLMGIFEKGFERPSPIQEQTVPLALFGRDILARAKNGTGK 294
Query: 315 TACFLFYFFFRFD 327
TA F+ R D
Sbjct: 295 TAAFIIPCLERVD 307
>gi|189913376|ref|YP_001964605.1| DEAD/DEAH box helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 534
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 98/145 (67%), Gaps = 3/145 (2%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
++G FQSFGL E+L+G+ + G++ P+PIQ++ IPLVLEG+D++A A+TG+GKTA + +
Sbjct: 12 EVGNDFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGL 71
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
P L ++K G++ L+L+PTRELALQ + +LGK +++T + GG S Q +
Sbjct: 72 PCLNRIKVE---DGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQ 128
Query: 154 LHASPDIVVATPGRFLHIVVEMELK 178
+ + VATPGR L ++ ELK
Sbjct: 129 VAKGAQVAVATPGRLLDLLKGKELK 153
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IPLVLEG+D++A A+TG+GKTA +
Sbjct: 41 IQKQAIPLVLEGKDLIAQAQTGTGKTAAY 69
>gi|395007602|ref|ZP_10391321.1| DNA/RNA helicase, superfamily II, partial [Acidovorax sp. CF316]
gi|394314410|gb|EJE51333.1| DNA/RNA helicase, superfamily II, partial [Acidovorax sp. CF316]
Length = 575
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +LK V + GY+ PTPIQ + IP VL G D++A A+TG+GKTA F +P+L +
Sbjct: 3 FDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPLLHR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L AA G+RAL+L+PTRELA Q + V+E GK+ + ST + GG M+ Q
Sbjct: 63 LSQSAAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQID 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ DI+VATPGR L + + L LS++Q
Sbjct: 123 RIKRGVDILVATPGRLLDLQQQGFLDLSTVQ 153
>gi|417473577|ref|ZP_12168940.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|353650489|gb|EHC92837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
Length = 467
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LIAHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 511
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 93/147 (63%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++LK V +GY P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 3 FASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T A VRAL+L+PTRELA Q + V+ GK L+S + GG + Q +L+
Sbjct: 63 LSKGTKAPAKQVRALVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQITKLNR 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + L S ++
Sbjct: 123 GVDILVATPGRLLDLYNQRALSFSQLE 149
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP VLEG+DV+A A+TG+GKTA F +G
Sbjct: 31 AIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSKG 66
>gi|407939705|ref|YP_006855346.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407897499|gb|AFU46708.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
KKS102]
Length = 594
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +LK V + GY+ PTPIQ + IP VLEG D++A A+TG+GKTA F +PML +
Sbjct: 3 FDELNLAPAILKAVHETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A G+RAL+L+PTRELA Q + V+E GK+ + ST + GG M+ Q
Sbjct: 63 LSQGTAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQID 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ DI+VATPGR L + + L LS+++
Sbjct: 123 RIKRGVDILVATPGRLLDLQQQGFLDLSTVE 153
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP VLEG D++A A+TG+GKTA F R +G
Sbjct: 31 AIPAVLEGHDLLAGAQTGTGKTAAFTLPMLHRLSQG 66
>gi|403057992|ref|YP_006646209.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402805318|gb|AFR02956.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 470
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTP+QR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A VRALIL+PTRELA Q + VK K+ L+S + GG S++ Q
Sbjct: 63 LTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLSLRSLVVFGGVSINPQMM 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + + + LS ++
Sbjct: 123 KLRGGVDILVATPGRLLDLEHQRAVDLSQVE 153
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
V IP+VLEGRD++A A+TG+GKTA F
Sbjct: 27 VQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK V + GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA+TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q
Sbjct: 73 LLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSD 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I++ATPGR L V + L +Q
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
Length = 436
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL ++ V + GY PTPIQ+K IPL+LEGRD++ +A+TG+GKTA F +P++++
Sbjct: 4 FQSLGLSNGLVTAVSENGYDTPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPLIDR 63
Query: 99 L---KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L K A G RALIL+PTREL Q K + K T L+ + ++GG S++ Q RL
Sbjct: 64 LQAEKKKAVPKGTRALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIKRLS 123
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI+VATPGR L +V + L + Y
Sbjct: 124 KGTDILVATPGRLLDLVDREAIDLRTASY 152
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ IPL+LEGRD++ +A+TG+GKTA F R
Sbjct: 28 IQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPLIDRL 64
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 194 KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 234
K T L+ + ++GG S++ Q RL DI+VATPGR L +V
Sbjct: 100 KHTPLRVSSVVGGVSINGQIKRLSKGTDILVATPGRLLDLV 140
>gi|422804761|ref|ZP_16853193.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
gi|324114364|gb|EGC08333.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
Length = 453
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469]
gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469]
Length = 454
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|422763931|ref|ZP_16817684.1| DEAD/DEAH box helicase [Escherichia coli E1167]
gi|324116221|gb|EGC10143.1| DEAD/DEAH box helicase [Escherichia coli E1167]
Length = 454
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP+VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|307130576|ref|YP_003882592.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
gi|306528105|gb|ADM98035.1| Putative ATP-dependent RNA helicase [Dickeya dadantii 3937]
Length = 454
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 101/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++L+ V ++GY+ PTP+QR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + + VRALIL+PTRELA Q + V+ K+ +L+S + GG S++ Q +L
Sbjct: 63 LNGRPSQAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI++ATPGR L + + + LS ++
Sbjct: 123 RGGVDILIATPGRLLDLEHQNAVDLSHVE 151
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
V IP+VLEGRD++A A+TG+GKTA F
Sbjct: 27 VQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|416896375|ref|ZP_11926222.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|417118486|ref|ZP_11969004.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
gi|422800154|ref|ZP_16848652.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|386138020|gb|EIG79180.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
Length = 454
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|384156092|ref|YP_005538907.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
gi|345469646|dbj|BAK71097.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
Length = 435
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 97/149 (65%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+L+ + + GY PTPIQ K+IP++L +DV+A A+TG+GKTA F +P+L++
Sbjct: 3 FSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHA---ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
LK + VRALIL+PTRELA Q + V+ GK+ +S + GG ++ Q A L
Sbjct: 63 LKDSNLKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLK 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR L ++ + L LS I++
Sbjct: 123 KGVDIIIATPGRLLDLISQDSLDLSKIEF 151
>gi|227113019|ref|ZP_03826675.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 471
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTP+QR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A VRALIL+PTRELA Q + VK K+ L+S + GG S++ Q
Sbjct: 63 LTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLSLRSLVVFGGVSINPQMM 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + + + LS ++
Sbjct: 123 KLRGGVDILVATPGRLLDLEHQRAVDLSQVE 153
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
V IP+VLEGRD++A A+TG+GKTA F
Sbjct: 27 VQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|77360862|ref|YP_340437.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
gi|76875773|emb|CAI86994.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Pseudoalteromonas haloplanktis TAC125]
Length = 466
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++ VL++GY+ PTPIQ + IP ++E RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L + A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 487
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 29 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 88
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 89 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 148
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 149 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 185
>gi|419231381|ref|ZP_13774170.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
gi|378081545|gb|EHW43497.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
Length = 454
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRSVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L D++VATPGR L + + +KL +++ +
Sbjct: 95 VRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
Length = 529
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 98/145 (67%), Gaps = 3/145 (2%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
++G FQSFGL E+L+G+ + G++ P+PIQ++ IPLVLEG+D++A A+TG+GKTA + +
Sbjct: 7 EVGNDFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGL 66
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
P L ++K G++ L+L+PTRELALQ + +LGK +++T + GG S Q +
Sbjct: 67 PCLNRIKVE---DGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQ 123
Query: 154 LHASPDIVVATPGRFLHIVVEMELK 178
+ + VATPGR L ++ ELK
Sbjct: 124 VAKGAQVAVATPGRLLDLLKGKELK 148
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IPLVLEG+D++A A+TG+GKTA +
Sbjct: 36 IQKQAIPLVLEGKDLIAQAQTGTGKTAAY 64
>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
Length = 495
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
Length = 464
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++ VL++GY+ PTPIQ + IP ++E RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L + A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|359456093|ref|ZP_09245284.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
gi|358046842|dbj|GAA81533.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
Length = 464
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++ VL++GY+ PTPIQ + IP ++E RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L + A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
Length = 435
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 97/149 (65%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+L+ + + GY PTPIQ K+IP++L +DV+A A+TG+GKTA F +P+L++
Sbjct: 3 FSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHA---ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
LK + VRALIL+PTRELA Q + V+ GK+ +S + GG ++ Q A L
Sbjct: 63 LKDSNFKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLK 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR L ++ + L LS I++
Sbjct: 123 KGVDIIIATPGRLLDLISQDSLDLSKIEF 151
>gi|359443658|ref|ZP_09233492.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
gi|358034494|dbj|GAA69741.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
Length = 464
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++ VL++GY+ PTPIQ + IP ++E RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L + A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|359435528|ref|ZP_09225727.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
gi|357917829|dbj|GAA61976.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
Length = 464
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++ VL++GY+ PTPIQ + IP ++E RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L + A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|402565885|ref|YP_006615230.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247082|gb|AFQ47536.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 574
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 81 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 140
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 141 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 200
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 201 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 237
>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
Length = 435
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 97/149 (65%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+L+ + + GY PTPIQ K+IP++L +DV+A A+TG+GKTA F +P+L++
Sbjct: 3 FSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHA---ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
LK + VRALIL+PTRELA Q + V+ GK+ +S + GG ++ Q A L
Sbjct: 63 LKDSNLKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLK 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR L ++ + L LS I++
Sbjct: 123 KGVDIIIATPGRLLDLISQDSLDLSKIEF 151
>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 487
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 93/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL E+L+ + ++GY PTPIQ IP+VL GRDV+ A+TG+GKTA F
Sbjct: 97 KPVDATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFS 156
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 157 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 216
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 217 MNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 253
>gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
Length = 426
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E++ V + GY PTPIQ ++IP VL GRD++A A+TG+GKTA F +P+L
Sbjct: 3 FSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLHL 62
Query: 99 LKTHA------ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A+S +RALIL+PTRELA Q V++ GK+ KL S + GG S++ Q
Sbjct: 63 LSQDSLKSASNASSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKQ 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
RL DI+VATPGR L V + + LS I+
Sbjct: 123 RLKGRVDILVATPGRLLDHVQQGTVNLSQIE 153
>gi|402483737|gb|AFQ59989.1| RhlE [Photorhabdus luminescens]
Length = 428
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++L+ + ++GY PTPIQ++ IP+VL G+D++A A+TG+GKTA F +PML++
Sbjct: 3 FESLGLSADILRAIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQR 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + VRALIL+PTRELA Q + V++ K+ +L+S + GG S++ Q +L
Sbjct: 63 LNDSSIQVKGRRPVRALILTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS ++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSRVE 151
>gi|392536161|ref|ZP_10283298.1| ATP-dependent RNA helicase [Pseudoalteromonas arctica A 37-1-2]
Length = 464
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++ VL++GY+ PTPIQ + IP ++E RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L + A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|381188403|ref|ZP_09895965.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
gi|379650191|gb|EIA08764.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
Length = 428
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK + K+GY P+PIQ+K IP +LEG+DV+A A+TG+GKTA F +P+L+
Sbjct: 3 FNSLGLSDALLKAISKKGYTTPSPIQQKAIPPILEGKDVLASAQTGTGKTAGFTLPILQI 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L H + +RALIL+PTRELA Q +KE +F L+ST + GG + Q A+L
Sbjct: 63 LAEGKHLSHRPIRALILTPTRELAAQILANIKEYSEFLDLRSTVIFGGVNQKPQVAQLRQ 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + + LS ++
Sbjct: 123 GIDILVATPGRLIDLQNQGLITLSKVE 149
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
+KE +F L+ST + GG + Q A+L DI+VATPGR + + + + LS +++ +
Sbjct: 93 IKEYSEFLDLRSTVIFGGVNQKPQVAQLRQGIDILVATPGRLIDLQNQGLITLSKVEILV 152
Query: 249 TD 250
D
Sbjct: 153 LD 154
>gi|333985547|ref|YP_004514757.1| DEAD/DEAH box helicase [Methylomonas methanica MC09]
gi|333809588|gb|AEG02258.1| DEAD/DEAH box helicase domain protein [Methylomonas methanica MC09]
Length = 431
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 97/149 (65%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L ++L+ V ++GY+ PTPIQ + IP++L+GRDV+A A+TG+GKTA F +P+L+
Sbjct: 3 FSELALSEQLLQAVAEQGYQTPTPIQAQAIPVILQGRDVLAGAQTGTGKTAGFTLPLLQI 62
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L + A VR LIL+PTRELA+Q ++ V+ GK + + GG S++ Q ++
Sbjct: 63 LHSQAIPQKPRPVRVLILTPTRELAMQVYESVRTYGKHLPFFAEAIYGGVSINPQIQKIQ 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DIV+ATPGR L ++ + L LS +Q+
Sbjct: 123 RGTDIVIATPGRLLDLIHQQHLSLSHVQH 151
>gi|408489495|ref|YP_006865864.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
gi|408466770|gb|AFU67114.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
Length = 423
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V +GY PTPIQ K+IP VLEG+DV+A A+TG+GKTA F +P+L+
Sbjct: 3 FKSLGLSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATSG--VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L VRALIL+PTRELA Q + VK+ GKF L+ST + GG + +Q + L
Sbjct: 63 LSQTPPLRNRPVRALILTPTRELAAQVHQSVKDYGKFVDLRSTVIFGGVNQKSQVSTLRN 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + L L+ ++
Sbjct: 123 GVDVLVATPGRLIDLNNQGLLSLAKVE 149
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + +IP VLEG+DV+A A+TG+GKTA F
Sbjct: 27 IQEKSIPAVLEGKDVLASAQTGTGKTAGF 55
>gi|414071784|ref|ZP_11407745.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
gi|410805784|gb|EKS11789.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
Length = 464
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++ VL++GY+ PTPIQ + IP ++E RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L + A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|417389255|ref|ZP_12153109.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Minnesota str. A4-603]
gi|353622507|gb|EHC72047.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Minnesota str. A4-603]
Length = 204
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LIAHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|398804512|ref|ZP_10563506.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398093685|gb|EJL84061.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 575
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L +LK VL++GY PTPIQ + IP VL+G D++ A+TG+GKTA F +P+L++
Sbjct: 3 FEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLKGVDLLGGAQTGTGKTAAFTLPLLQR 62
Query: 99 LKTHA------ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L T A + VRALI++PTRELA Q + V+ GK+T L S + GG M Q
Sbjct: 63 LSTEARLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYTDLTSMVMFGGVGMGAQIE 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + L LS +Q
Sbjct: 123 KLRRGVDILVATPGRLLDHASQGTLDLSQVQ 153
>gi|424817011|ref|ZP_18242162.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
Length = 453
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|223995669|ref|XP_002287508.1| atp-dependent RNA DEAD/DEAH box helicase [Thalassiosira pseudonana
CCMP1335]
gi|220976624|gb|EED94951.1| atp-dependent RNA DEAD/DEAH box helicase [Thalassiosira pseudonana
CCMP1335]
Length = 416
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 2/153 (1%)
Query: 17 VTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD 76
+T D+ T D + G F+ F L E+L G+ ++G++ P+PIQ + IP++L+ R+
Sbjct: 22 LTAPKKDERYKTEDVTQTKGRDFEDFFLKRELLMGIFEKGFEKPSPIQEEAIPIILQNRN 81
Query: 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136
V+A A+ G+GKTA ++IP LE KT + V+ LIL PTRELALQT VKE+GK +
Sbjct: 82 VLARAKNGTGKTAAYIIPCLE--KTDTTQTYVQVLILIPTRELALQTSAIVKEIGKHMGI 139
Query: 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
Q GG S+ + RL+ S I+VATPGR L
Sbjct: 140 QCMVTTGGTSLKDDIMRLYNSVHIIVATPGRIL 172
>gi|432849252|ref|ZP_20080474.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE144]
gi|431401252|gb|ELG84596.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE144]
Length = 454
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LISRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L D++VATPGR L + + +KL I++ +
Sbjct: 95 VRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895]
gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895]
Length = 454
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITQQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|423139268|ref|ZP_17126906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051822|gb|EHY69713.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 453
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITQQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|415836765|ref|ZP_11519063.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
gi|417282857|ref|ZP_12070155.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3003]
gi|425276656|ref|ZP_18667983.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli
ARS4.2123]
gi|323190923|gb|EFZ76190.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
gi|386244062|gb|EII85794.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3003]
gi|408206357|gb|EKI31167.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli
ARS4.2123]
Length = 453
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|429094723|ref|ZP_19157248.1| ATP-dependent RNA helicase RhlE [Cronobacter dublinensis 1210]
gi|426740207|emb|CCJ83361.1| ATP-dependent RNA helicase RhlE [Cronobacter dublinensis 1210]
Length = 479
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ + ++GY PTPIQR+ IP+VL G+D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T VRALIL+PTRELA Q + V+E K+ ++S + GG S++ Q +L
Sbjct: 63 LTTSQPHPQGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDQVE 151
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 19/143 (13%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V+E K+ ++S + GG S++ Q +L D+++ATPGR L + + +KL +++ +
Sbjct: 95 VREYSKYLDIRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVLV 154
Query: 249 TDFKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV----QVTDDTIPL---VLEG 301
D + R+ LD+ IH R+ + K PAK++ + +DD L +L
Sbjct: 155 LD---EADRM-LDM-----GFIHDIRRVLAKL-PAKRQNLLFSATFSDDIKALAEKLLRN 204
Query: 302 RDVVAMAR--TGSGKTACFLFYF 322
+ VA+AR T SG+ + +
Sbjct: 205 PEEVAVARRNTASGQVTQHVHFV 227
>gi|386748255|ref|YP_006221463.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 99-5656]
gi|384554497|gb|AFI06253.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 99-5656]
Length = 507
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 86/132 (65%), Gaps = 3/132 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F GL +VLK V + G+ P+PIQ K IP VLEGRDVVA A+TG+GKTA F +P++
Sbjct: 37 SFNDLGLKPQVLKSVYEAGFNSPSPIQEKAIPAVLEGRDVVAQAQTGTGKTAAFALPIIN 96
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
LK + ALI++PTRELA+Q + +LGK TK ++ C+ GG S+ Q + +
Sbjct: 97 NLKN---NHTIEALIITPTRELAMQISDEIFKLGKHTKTRTVCVYGGQSIKRQCEFIEKN 153
Query: 158 PDIVVATPGRFL 169
P +++ATPGR L
Sbjct: 154 PQVMIATPGRLL 165
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP VLEGRDVVA A+TG+GKTA F
Sbjct: 62 IQEKAIPAVLEGRDVVAQAQTGTGKTAAF 90
>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 492
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++LK V +GY P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 3 FASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T A VRAL+L+PTRELA Q + V+ G+F L+S + GG + Q +L+
Sbjct: 63 LSKGTKAPAKQVRALVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQITKLNR 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + S ++
Sbjct: 123 GVDILVATPGRLLDLYNQRAVSFSQLE 149
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+ IP VLEG+DV+A A+TG+GKTA F +G
Sbjct: 27 IQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSKG 66
>gi|354596964|ref|ZP_09014981.1| DEAD/DEAH box helicase domain protein [Brenneria sp. EniD312]
gi|353674899|gb|EHD20932.1| DEAD/DEAH box helicase domain protein [Brenneria sp. EniD312]
Length = 455
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTP+QR+ IP+VL GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSADILRAVEEQGYREPTPVQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + A + VRALIL+PTRELA Q + V+ K+ +L+S + GG S++ Q +L
Sbjct: 63 LSSGAPPAKGRRPVRALILTPTRELAAQIDENVQAYSKYLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS I+
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSQIE 151
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ D +G S +++ + Q R+ P +++ IP+VL GRD++A A+TG+GKTA
Sbjct: 1 MSFDSLGLSADILRAVEEQGYREPTPVQRQ-------AIPVVLAGRDLMASAQTGTGKTA 53
Query: 317 CFLFYFF 323
F
Sbjct: 54 GFTLPLL 60
>gi|432717836|ref|ZP_19952831.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE9]
gi|431265515|gb|ELF57079.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE9]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|417288603|ref|ZP_12075888.1| ATP-dependent RNA helicase RhlE [Escherichia coli TW07793]
gi|386247395|gb|EII93568.1| ATP-dependent RNA helicase RhlE [Escherichia coli TW07793]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
Length = 521
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK ++++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 30 KPVDATFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 89
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 90 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 149
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 150 MNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 186
>gi|419911645|ref|ZP_14430115.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD1]
gi|388393221|gb|EIL54610.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD1]
Length = 452
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|386618245|ref|YP_006137825.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|387828776|ref|YP_003348713.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
gi|432420873|ref|ZP_19663428.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE178]
gi|432499009|ref|ZP_19740785.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE216]
gi|432557779|ref|ZP_19794468.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE49]
gi|432693549|ref|ZP_19928760.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE162]
gi|432709596|ref|ZP_19944661.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE6]
gi|432918019|ref|ZP_20122424.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE173]
gi|432925309|ref|ZP_20127338.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE175]
gi|432980270|ref|ZP_20169048.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE211]
gi|433095692|ref|ZP_20281903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE139]
gi|433104902|ref|ZP_20290920.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE148]
gi|281177933|dbj|BAI54263.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
gi|333968746|gb|AEG35551.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|430946490|gb|ELC66413.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE178]
gi|431031680|gb|ELD44418.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE216]
gi|431093857|gb|ELD99513.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE49]
gi|431236215|gb|ELF31428.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE162]
gi|431251298|gb|ELF45315.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE6]
gi|431446200|gb|ELH26949.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE173]
gi|431448030|gb|ELH28748.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE175]
gi|431493165|gb|ELH72759.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE211]
gi|431618950|gb|ELI87878.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE139]
gi|431633658|gb|ELJ01921.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE148]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|432390781|ref|ZP_19633639.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE21]
gi|432792011|ref|ZP_20026101.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE78]
gi|432797974|ref|ZP_20031999.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE79]
gi|430921399|gb|ELC42223.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE21]
gi|431341593|gb|ELG28599.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE78]
gi|431344996|gb|ELG31928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE79]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|417307244|ref|ZP_12094116.1| ATP-dependent RNA helicase rhlE [Escherichia coli PCN033]
gi|338771115|gb|EGP25863.1| ATP-dependent RNA helicase rhlE [Escherichia coli PCN033]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39]
gi|386623197|ref|YP_006142925.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39]
gi|349736935|gb|AEQ11641.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
Length = 447
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 520
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK ++++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 29 KPVDATFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 88
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 89 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 148
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 149 MNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 185
>gi|422782366|ref|ZP_16835151.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|387606349|ref|YP_006095205.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|170683710|ref|YP_001742900.1| ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
gi|422827999|ref|ZP_16876172.1| ATP-dependent RNA helicase rhlE [Escherichia coli B093]
gi|170521428|gb|ACB19606.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
gi|371615757|gb|EHO04145.1| ATP-dependent RNA helicase rhlE [Escherichia coli B093]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|422358967|ref|ZP_16439616.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
110-3]
gi|315287179|gb|EFU46591.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 110-3]
Length = 439
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|432769642|ref|ZP_20003995.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE50]
gi|432960359|ref|ZP_20150490.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE202]
gi|433062038|ref|ZP_20248995.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE125]
gi|431317724|gb|ELG05500.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE50]
gi|431478046|gb|ELH57805.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE202]
gi|431586954|gb|ELI58336.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE125]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|156085513|ref|XP_001610166.1| ATP-dependent RNA helicase [Babesia bovis T2Bo]
gi|154797418|gb|EDO06598.1| ATP-dependent RNA helicase, putative [Babesia bovis]
Length = 433
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D K G F+ + L E+L G+ ++G++ P+PIQ ++IP+ L G D++A A+
Sbjct: 46 DKRYKTEDVTKTRGSEFEDYFLKRELLMGIFEKGFEKPSPIQEESIPVALAGHDILARAK 105
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA F+IP+LEKL T + + ++ LIL PTRELALQT VKELGK+ +Q
Sbjct: 106 NGTGKTAAFVIPLLEKLNT--SNNHIQGLILLPTRELALQTSAVVKELGKYLDVQCMVST 163
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHI 171
GG S+ N RL+ ++ TPGR L +
Sbjct: 164 GGTSLRNDIVRLYKPVHVLCGTPGRILDL 192
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 174 EMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 233
E+ L+ S++ VKELGK+ +Q GG S+ N RL+ ++ TPGR L +
Sbjct: 139 ELALQTSAV------VKELGKYLDVQCMVSTGGTSLRNDIVRLYKPVHVLCGTPGRILDL 192
Query: 234 VVEMELKLSSIQLSLTD 250
+ LS + + D
Sbjct: 193 TNKNVADLSKCHVVILD 209
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333
+ +++IP+ L G D++A A+ G+GKTA F+ + + N +I
Sbjct: 86 IQEESIPVALAGHDILARAKNGTGKTAAFVIPLLEKLNTSNNHI 129
>gi|91209829|ref|YP_539815.1| ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
gi|218557702|ref|YP_002390615.1| ATP-dependent RNA helicase RhlE [Escherichia coli S88]
gi|218688583|ref|YP_002396795.1| ATP-dependent RNA helicase RhlE [Escherichia coli ED1a]
gi|237707244|ref|ZP_04537725.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
gi|386598515|ref|YP_006100021.1| ATP-dependent RNA helicase [Escherichia coli IHE3034]
gi|386605309|ref|YP_006111609.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
gi|417083288|ref|ZP_11951383.1| ATP-dependent RNA helicase RhlE [Escherichia coli cloneA_i1]
gi|419945239|ref|ZP_14461691.1| ATP-dependent RNA helicase RhlE [Escherichia coli HM605]
gi|422753403|ref|ZP_16807230.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|422839261|ref|ZP_16887233.1| ATP-dependent RNA helicase rhlE [Escherichia coli H397]
gi|432357084|ref|ZP_19600329.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE4]
gi|432361555|ref|ZP_19604739.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE5]
gi|432440118|ref|ZP_19682471.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE189]
gi|432445289|ref|ZP_19687595.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE191]
gi|432464759|ref|ZP_19706865.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE205]
gi|432572730|ref|ZP_19809221.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE55]
gi|432582855|ref|ZP_19819265.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE57]
gi|432587037|ref|ZP_19823407.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE58]
gi|432596680|ref|ZP_19832961.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE62]
gi|432753536|ref|ZP_19988102.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE22]
gi|432777676|ref|ZP_20011926.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE59]
gi|432786464|ref|ZP_20020629.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE65]
gi|432801077|ref|ZP_20035062.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE84]
gi|432820056|ref|ZP_20053769.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE118]
gi|432826272|ref|ZP_20059927.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE123]
gi|432897685|ref|ZP_20108516.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE192]
gi|433004263|ref|ZP_20192701.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE227]
gi|433012971|ref|ZP_20201347.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE104]
gi|433022657|ref|ZP_20210669.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE106]
gi|433027779|ref|ZP_20215652.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE109]
gi|433071845|ref|ZP_20258540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE129]
gi|433119347|ref|ZP_20305054.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE157]
gi|433152888|ref|ZP_20337854.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE176]
gi|433167597|ref|ZP_20352264.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE180]
gi|433182333|ref|ZP_20366629.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE85]
gi|433323476|ref|ZP_20400825.1| ATP-dependent RNA helicase RhlE [Escherichia coli J96]
gi|91071403|gb|ABE06284.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
gi|218364471|emb|CAR02153.1| RNA helicase [Escherichia coli S88]
gi|218426147|emb|CAR06967.1| RNA helicase [Escherichia coli ED1a]
gi|226898454|gb|EEH84713.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
gi|294493052|gb|ADE91808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
IHE3034]
gi|307627793|gb|ADN72097.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
gi|323958086|gb|EGB53795.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|355352704|gb|EHG01878.1| ATP-dependent RNA helicase RhlE [Escherichia coli cloneA_i1]
gi|371609793|gb|EHN98326.1| ATP-dependent RNA helicase rhlE [Escherichia coli H397]
gi|388416387|gb|EIL76278.1| ATP-dependent RNA helicase RhlE [Escherichia coli HM605]
gi|430879262|gb|ELC02612.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE4]
gi|430889445|gb|ELC12106.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE5]
gi|430969031|gb|ELC86193.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE189]
gi|430975131|gb|ELC92033.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE191]
gi|430996565|gb|ELD12841.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE205]
gi|431111068|gb|ELE14985.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE55]
gi|431119871|gb|ELE22870.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE57]
gi|431123204|gb|ELE25946.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE58]
gi|431132465|gb|ELE34464.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE62]
gi|431304772|gb|ELF93296.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE22]
gi|431329865|gb|ELG17150.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE59]
gi|431341100|gb|ELG28114.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE65]
gi|431350312|gb|ELG37124.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE84]
gi|431370312|gb|ELG56113.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE118]
gi|431374056|gb|ELG59651.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE123]
gi|431428412|gb|ELH10353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE192]
gi|431517584|gb|ELH95106.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE227]
gi|431534619|gb|ELI11099.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE104]
gi|431539394|gb|ELI15145.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE106]
gi|431545406|gb|ELI20061.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE109]
gi|431592521|gb|ELI63097.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE129]
gi|431648209|gb|ELJ15608.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE157]
gi|431677981|gb|ELJ43993.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE176]
gi|431693120|gb|ELJ58537.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE180]
gi|431711126|gb|ELJ75485.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE85]
gi|432348179|gb|ELL42631.1| ATP-dependent RNA helicase RhlE [Escherichia coli J96]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|187733875|ref|YP_001881017.1| ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94]
gi|416268083|ref|ZP_11642051.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
gi|416304675|ref|ZP_11653972.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
gi|417681065|ref|ZP_12330444.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
gi|420324512|ref|ZP_14826293.1| ATP-dependent RNA helicase rhlE [Shigella flexneri CCH060]
gi|420353560|ref|ZP_14854672.1| ATP-dependent RNA helicase rhlE [Shigella boydii 4444-74]
gi|420379143|ref|ZP_14878632.1| ATP-dependent RNA helicase rhlE [Shigella dysenteriae 225-75]
gi|421681481|ref|ZP_16121307.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 1485-80]
gi|187430867|gb|ACD10141.1| putative ATP-dependent RNA helicase RhlE [Shigella boydii CDC
3083-94]
gi|320175218|gb|EFW50327.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
gi|320183285|gb|EFW58140.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
gi|332097530|gb|EGJ02510.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
gi|391256040|gb|EIQ15179.1| ATP-dependent RNA helicase rhlE [Shigella flexneri CCH060]
gi|391278315|gb|EIQ37027.1| ATP-dependent RNA helicase rhlE [Shigella boydii 4444-74]
gi|391305618|gb|EIQ63398.1| ATP-dependent RNA helicase rhlE [Shigella dysenteriae 225-75]
gi|404341432|gb|EJZ67838.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 1485-80]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|432873837|ref|ZP_20093105.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE147]
gi|431404432|gb|ELG87683.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE147]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|432615625|ref|ZP_19851752.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE75]
gi|431156800|gb|ELE57466.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE75]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|15800548|ref|NP_286560.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EDL933]
gi|15830129|ref|NP_308902.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
Sakai]
gi|168752016|ref|ZP_02777038.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4113]
gi|168756582|ref|ZP_02781589.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4401]
gi|168764299|ref|ZP_02789306.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4501]
gi|168767298|ref|ZP_02792305.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4486]
gi|168777223|ref|ZP_02802230.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4196]
gi|168779341|ref|ZP_02804348.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4076]
gi|168787011|ref|ZP_02812018.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC869]
gi|168799929|ref|ZP_02824936.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC508]
gi|195936837|ref|ZP_03082219.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4024]
gi|208808862|ref|ZP_03251199.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4206]
gi|208814983|ref|ZP_03256162.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4045]
gi|208822342|ref|ZP_03262661.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4042]
gi|209396359|ref|YP_002269466.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4115]
gi|217324654|ref|ZP_03440738.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. TW14588]
gi|254791991|ref|YP_003076828.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
TW14359]
gi|261225444|ref|ZP_05939725.1| RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
gi|261258587|ref|ZP_05951120.1| RNA helicase [Escherichia coli O157:H7 str. FRIK966]
gi|291281794|ref|YP_003498612.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
CB9615]
gi|293414075|ref|ZP_06656724.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
gi|387505903|ref|YP_006158159.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
RM12579]
gi|387881409|ref|YP_006311711.1| ATP-dependent RNA helicase RhlE [Escherichia coli Xuzhou21]
gi|416309552|ref|ZP_11655924.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1044]
gi|416317432|ref|ZP_11660473.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC1212]
gi|416332189|ref|ZP_11670268.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1125]
gi|416781898|ref|ZP_11877367.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
G5101]
gi|416793131|ref|ZP_11882292.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
493-89]
gi|416804396|ref|ZP_11887151.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
2687]
gi|416815421|ref|ZP_11891857.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
3256-97]
gi|416825253|ref|ZP_11896441.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
5905]
gi|416836098|ref|ZP_11901713.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
LSU-61]
gi|419044083|ref|ZP_13591054.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3A]
gi|419049436|ref|ZP_13596352.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3B]
gi|419055518|ref|ZP_13602371.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3C]
gi|419061090|ref|ZP_13607869.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3D]
gi|419067186|ref|ZP_13613661.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3E]
gi|419074099|ref|ZP_13619667.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3F]
gi|419079198|ref|ZP_13624680.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4A]
gi|419084835|ref|ZP_13630244.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4B]
gi|419091085|ref|ZP_13636402.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4C]
gi|419096771|ref|ZP_13642013.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4D]
gi|419102575|ref|ZP_13647740.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4E]
gi|419107936|ref|ZP_13653045.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4F]
gi|419113710|ref|ZP_13658740.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5A]
gi|419119348|ref|ZP_13664326.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5B]
gi|419125059|ref|ZP_13669956.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5C]
gi|419130595|ref|ZP_13675442.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5D]
gi|419135320|ref|ZP_13680126.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC5E]
gi|420268096|ref|ZP_14770500.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA22]
gi|420273875|ref|ZP_14776207.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA40]
gi|420279271|ref|ZP_14781536.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW06591]
gi|420285269|ref|ZP_14787484.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10246]
gi|420290983|ref|ZP_14793146.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW11039]
gi|420296582|ref|ZP_14798675.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09109]
gi|420302895|ref|ZP_14804921.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10119]
gi|420308059|ref|ZP_14810031.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1738]
gi|420313779|ref|ZP_14815684.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1734]
gi|421811066|ref|ZP_16246865.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0416]
gi|421817148|ref|ZP_16252703.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0821]
gi|421822551|ref|ZP_16257988.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK920]
gi|421829288|ref|ZP_16264615.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA7]
gi|423664723|ref|ZP_17639886.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA31]
gi|424082066|ref|ZP_17818917.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA517]
gi|424088699|ref|ZP_17824945.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1996]
gi|424108130|ref|ZP_17842696.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93-001]
gi|424114123|ref|ZP_17848259.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA3]
gi|424120181|ref|ZP_17853874.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA5]
gi|424126420|ref|ZP_17859615.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA9]
gi|424145511|ref|ZP_17877271.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA15]
gi|424151642|ref|ZP_17882889.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA24]
gi|424190135|ref|ZP_17888328.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA25]
gi|424271705|ref|ZP_17894236.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA28]
gi|424425322|ref|ZP_17899959.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA32]
gi|424460367|ref|ZP_17911281.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA39]
gi|424473404|ref|ZP_17923064.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA42]
gi|424479335|ref|ZP_17928574.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW07945]
gi|424485404|ref|ZP_17934260.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09098]
gi|424491576|ref|ZP_17939919.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09195]
gi|424498624|ref|ZP_17945886.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4203]
gi|424504858|ref|ZP_17951619.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4196]
gi|424511106|ref|ZP_17957321.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14313]
gi|424518644|ref|ZP_17963068.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14301]
gi|424524503|ref|ZP_17968517.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4421]
gi|424530707|ref|ZP_17974322.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4422]
gi|424536684|ref|ZP_17979934.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4013]
gi|424542601|ref|ZP_17985401.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4402]
gi|424548920|ref|ZP_17991111.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4439]
gi|424555167|ref|ZP_17996880.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4436]
gi|424561523|ref|ZP_18002803.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4437]
gi|424573744|ref|ZP_18014155.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1845]
gi|424579693|ref|ZP_18019614.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1863]
gi|425096364|ref|ZP_18499377.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4870]
gi|425102508|ref|ZP_18505148.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5.2239]
gi|425108313|ref|ZP_18510551.1| ATP-dependent RNA helicase rhlE [Escherichia coli 6.0172]
gi|425124149|ref|ZP_18525707.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0586]
gi|425130179|ref|ZP_18531268.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.2524]
gi|425136543|ref|ZP_18537257.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0833]
gi|425148733|ref|ZP_18548610.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.0221]
gi|425154337|ref|ZP_18553879.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA34]
gi|425160784|ref|ZP_18559955.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA506]
gi|425166310|ref|ZP_18565111.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA507]
gi|425172598|ref|ZP_18570987.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA504]
gi|425178488|ref|ZP_18576530.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1999]
gi|425191392|ref|ZP_18588508.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE1487]
gi|425197701|ref|ZP_18594343.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE037]
gi|425204368|ref|ZP_18600488.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK2001]
gi|425210121|ref|ZP_18605847.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA4]
gi|425216172|ref|ZP_18611477.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA23]
gi|425222753|ref|ZP_18617595.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA49]
gi|425228981|ref|ZP_18623364.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA45]
gi|425235284|ref|ZP_18629238.1| ATP-dependent RNA helicase rhlE [Escherichia coli TT12B]
gi|425241281|ref|ZP_18634909.1| ATP-dependent RNA helicase rhlE [Escherichia coli MA6]
gi|425247409|ref|ZP_18640604.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5905]
gi|425253144|ref|ZP_18646003.1| ATP-dependent RNA helicase rhlE [Escherichia coli CB7326]
gi|425259420|ref|ZP_18651779.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC96038]
gi|425265567|ref|ZP_18657468.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5412]
gi|425292999|ref|ZP_18683570.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA38]
gi|425315656|ref|ZP_18704719.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1736]
gi|425327915|ref|ZP_18716122.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1846]
gi|425334099|ref|ZP_18721803.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1847]
gi|425340513|ref|ZP_18727738.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1848]
gi|425352617|ref|ZP_18738981.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1850]
gi|425358604|ref|ZP_18744561.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1856]
gi|425364714|ref|ZP_18750242.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1862]
gi|425371162|ref|ZP_18756108.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1864]
gi|425383958|ref|ZP_18767821.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1866]
gi|425390648|ref|ZP_18774088.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1868]
gi|425396767|ref|ZP_18779796.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1869]
gi|425402754|ref|ZP_18785345.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1870]
gi|425409293|ref|ZP_18791431.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE098]
gi|425415574|ref|ZP_18797194.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK523]
gi|425426707|ref|ZP_18807746.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1304]
gi|428951536|ref|ZP_19023643.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1042]
gi|428957401|ref|ZP_19029068.1| ATP-dependent RNA helicase rhlE [Escherichia coli 89.0511]
gi|428963723|ref|ZP_19034884.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0091]
gi|428969936|ref|ZP_19040549.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0039]
gi|428976421|ref|ZP_19046575.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.2281]
gi|428982032|ref|ZP_19051749.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0055]
gi|428988330|ref|ZP_19057597.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0056]
gi|428994131|ref|ZP_19063022.1| ATP-dependent RNA helicase rhlE [Escherichia coli 94.0618]
gi|429000267|ref|ZP_19068753.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0183]
gi|429006446|ref|ZP_19074338.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.1288]
gi|429012785|ref|ZP_19080022.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0943]
gi|429019038|ref|ZP_19085803.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0428]
gi|429031042|ref|ZP_19096893.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0939]
gi|429037193|ref|ZP_19102617.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0932]
gi|429043163|ref|ZP_19108143.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0107]
gi|429048882|ref|ZP_19113535.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0003]
gi|429054278|ref|ZP_19118758.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.1742]
gi|429059931|ref|ZP_19124063.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0007]
gi|429065437|ref|ZP_19129277.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0672]
gi|429071962|ref|ZP_19135308.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0678]
gi|429077288|ref|ZP_19140496.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0713]
gi|429824529|ref|ZP_19355999.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0109]
gi|429830882|ref|ZP_19361698.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0010]
gi|444923221|ref|ZP_21242900.1| ATP-dependent RNA helicase rhlE [Escherichia coli 09BKT078844]
gi|444929524|ref|ZP_21248665.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0814]
gi|444934814|ref|ZP_21253742.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0815]
gi|444940413|ref|ZP_21259049.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0816]
gi|444945962|ref|ZP_21264373.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0839]
gi|444951558|ref|ZP_21269771.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0848]
gi|444957033|ref|ZP_21275021.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1753]
gi|444962292|ref|ZP_21280031.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1775]
gi|444973536|ref|ZP_21290805.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1805]
gi|444979084|ref|ZP_21296069.1| ATP-dependent RNA helicase rhlE [Escherichia coli ATCC 700728]
gi|444984373|ref|ZP_21301233.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA11]
gi|444989619|ref|ZP_21306350.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA19]
gi|444994964|ref|ZP_21311552.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA13]
gi|445000476|ref|ZP_21316930.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA2]
gi|445005935|ref|ZP_21322265.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA47]
gi|445011046|ref|ZP_21327230.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA48]
gi|445016880|ref|ZP_21332922.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA8]
gi|445022315|ref|ZP_21338229.1| ATP-dependent RNA helicase rhlE [Escherichia coli 7.1982]
gi|445027574|ref|ZP_21343342.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1781]
gi|445033074|ref|ZP_21348687.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1762]
gi|445038764|ref|ZP_21354226.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA35]
gi|445044065|ref|ZP_21359392.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4880]
gi|445049558|ref|ZP_21364714.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0083]
gi|445055210|ref|ZP_21370151.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0670]
gi|452970952|ref|ZP_21969179.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4009]
gi|12513789|gb|AAG55168.1|AE005260_7 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
EDL933]
gi|13360334|dbj|BAB34298.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
Sakai]
gi|187767485|gb|EDU31329.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4196]
gi|188014049|gb|EDU52171.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4113]
gi|189002895|gb|EDU71881.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4076]
gi|189356291|gb|EDU74710.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4401]
gi|189363536|gb|EDU81955.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4486]
gi|189365692|gb|EDU84108.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4501]
gi|189373064|gb|EDU91480.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC869]
gi|189377707|gb|EDU96123.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC508]
gi|208728663|gb|EDZ78264.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4206]
gi|208731631|gb|EDZ80319.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4045]
gi|208737827|gb|EDZ85510.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4042]
gi|209157759|gb|ACI35192.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4115]
gi|209775908|gb|ACI86266.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775910|gb|ACI86267.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775912|gb|ACI86268.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775914|gb|ACI86269.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775916|gb|ACI86270.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|217320875|gb|EEC29299.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. TW14588]
gi|254591391|gb|ACT70752.1| RNA helicase [Escherichia coli O157:H7 str. TW14359]
gi|290761667|gb|ADD55628.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
CB9615]
gi|291434133|gb|EFF07106.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
gi|320192728|gb|EFW67369.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC1212]
gi|320637659|gb|EFX07451.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
G5101]
gi|320642785|gb|EFX11986.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
493-89]
gi|320648241|gb|EFX16896.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
2687]
gi|320654078|gb|EFX22146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659701|gb|EFX27257.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
5905]
gi|320664171|gb|EFX31322.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
LSU-61]
gi|326338317|gb|EGD62146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1125]
gi|326346295|gb|EGD70033.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1044]
gi|374357897|gb|AEZ39604.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
RM12579]
gi|377899702|gb|EHU64048.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3A]
gi|377901498|gb|EHU65814.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3B]
gi|377913110|gb|EHU77254.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3C]
gi|377917176|gb|EHU81241.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3D]
gi|377919854|gb|EHU83888.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3E]
gi|377931075|gb|EHU94945.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3F]
gi|377933305|gb|EHU97150.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4A]
gi|377938207|gb|EHV01975.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4B]
gi|377949244|gb|EHV12884.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4C]
gi|377950209|gb|EHV13837.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4D]
gi|377953743|gb|EHV17307.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4E]
gi|377964410|gb|EHV27845.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5A]
gi|377966303|gb|EHV29715.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4F]
gi|377970991|gb|EHV34348.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5B]
gi|377978988|gb|EHV42266.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5C]
gi|377979166|gb|EHV42443.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5D]
gi|377986469|gb|EHV49659.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC5E]
gi|386794867|gb|AFJ27901.1| ATP-dependent RNA helicase RhlE [Escherichia coli Xuzhou21]
gi|390649930|gb|EIN28402.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1996]
gi|390651672|gb|EIN29942.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA517]
gi|390669056|gb|EIN45761.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93-001]
gi|390687795|gb|EIN62940.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA3]
gi|390690684|gb|EIN65470.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA9]
gi|390691364|gb|EIN66112.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA5]
gi|390709283|gb|EIN82393.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA15]
gi|390719403|gb|EIN92128.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA22]
gi|390732457|gb|EIO04142.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA25]
gi|390732767|gb|EIO04441.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA24]
gi|390735327|gb|EIO06721.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA28]
gi|390751004|gb|EIO20976.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA31]
gi|390751421|gb|EIO21332.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA32]
gi|390761962|gb|EIO31232.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA40]
gi|390776912|gb|EIO44791.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA42]
gi|390781177|gb|EIO48862.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA39]
gi|390784981|gb|EIO52537.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW06591]
gi|390794132|gb|EIO61431.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10246]
gi|390801014|gb|EIO68080.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW11039]
gi|390808163|gb|EIO75009.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW07945]
gi|390811320|gb|EIO78034.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09109]
gi|390818720|gb|EIO85089.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10119]
gi|390821664|gb|EIO87843.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09098]
gi|390836280|gb|EIP00833.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4203]
gi|390838892|gb|EIP03069.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4196]
gi|390839808|gb|EIP03888.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09195]
gi|390854827|gb|EIP17604.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14301]
gi|390857889|gb|EIP20312.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14313]
gi|390858020|gb|EIP20441.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4421]
gi|390870510|gb|EIP32011.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4422]
gi|390874956|gb|EIP36038.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4013]
gi|390884803|gb|EIP45069.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4402]
gi|390887323|gb|EIP47306.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4439]
gi|390893053|gb|EIP52621.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4436]
gi|390903454|gb|EIP62500.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1738]
gi|390908508|gb|EIP67331.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4437]
gi|390911273|gb|EIP69978.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1734]
gi|390924107|gb|EIP81909.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1863]
gi|390925816|gb|EIP83448.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1845]
gi|408071615|gb|EKH05950.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA7]
gi|408075733|gb|EKH09965.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK920]
gi|408085388|gb|EKH19012.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA34]
gi|408089225|gb|EKH22556.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA506]
gi|408094017|gb|EKH27062.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA507]
gi|408101056|gb|EKH33525.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA504]
gi|408109307|gb|EKH41234.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1999]
gi|408121072|gb|EKH52036.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE1487]
gi|408129264|gb|EKH59497.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE037]
gi|408130964|gb|EKH61025.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK2001]
gi|408140235|gb|EKH69770.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA4]
gi|408149439|gb|EKH78117.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA23]
gi|408151260|gb|EKH79768.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA49]
gi|408156447|gb|EKH84649.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA45]
gi|408166156|gb|EKH93774.1| ATP-dependent RNA helicase rhlE [Escherichia coli TT12B]
gi|408170867|gb|EKH98017.1| ATP-dependent RNA helicase rhlE [Escherichia coli MA6]
gi|408172863|gb|EKH99915.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5905]
gi|408186144|gb|EKI12251.1| ATP-dependent RNA helicase rhlE [Escherichia coli CB7326]
gi|408190165|gb|EKI15836.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5412]
gi|408190455|gb|EKI16100.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC96038]
gi|408232112|gb|EKI55365.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA38]
gi|408248415|gb|EKI70464.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1736]
gi|408258389|gb|EKI79660.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1846]
gi|408267432|gb|EKI87892.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1847]
gi|408268914|gb|EKI89236.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1848]
gi|408283982|gb|EKJ03111.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1850]
gi|408286629|gb|EKJ05548.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1856]
gi|408299401|gb|EKJ17202.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1862]
gi|408299864|gb|EKJ17629.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1864]
gi|408315484|gb|EKJ31799.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1868]
gi|408315913|gb|EKJ32211.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1866]
gi|408330454|gb|EKJ45717.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1869]
gi|408335464|gb|EKJ50310.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE098]
gi|408336989|gb|EKJ51735.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1870]
gi|408349709|gb|EKJ63631.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK523]
gi|408352595|gb|EKJ66139.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1304]
gi|408557723|gb|EKK34146.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5.2239]
gi|408557978|gb|EKK34393.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4870]
gi|408558710|gb|EKK35069.1| ATP-dependent RNA helicase rhlE [Escherichia coli 6.0172]
gi|408584545|gb|EKK59545.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0586]
gi|408588569|gb|EKK63141.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.2524]
gi|408589960|gb|EKK64459.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0833]
gi|408605138|gb|EKK78667.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0416]
gi|408606641|gb|EKK80067.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.0221]
gi|408616341|gb|EKK89496.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0821]
gi|427213706|gb|EKV83106.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1042]
gi|427215415|gb|EKV84597.1| ATP-dependent RNA helicase rhlE [Escherichia coli 89.0511]
gi|427232964|gb|EKW00763.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.2281]
gi|427233069|gb|EKW00855.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0039]
gi|427234609|gb|EKW02286.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0091]
gi|427250384|gb|EKW17055.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0056]
gi|427251916|gb|EKW18438.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0055]
gi|427253243|gb|EKW19685.1| ATP-dependent RNA helicase rhlE [Escherichia coli 94.0618]
gi|427269502|gb|EKW34459.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0183]
gi|427269662|gb|EKW34614.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0943]
gi|427274177|gb|EKW38837.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.1288]
gi|427285696|gb|EKW49635.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0428]
gi|427292672|gb|EKW55999.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0939]
gi|427304283|gb|EKW66940.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0003]
gi|427305314|gb|EKW67909.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0932]
gi|427309391|gb|EKW71709.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0107]
gi|427320780|gb|EKW82514.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.1742]
gi|427321347|gb|EKW83041.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0007]
gi|427333180|gb|EKW94290.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0713]
gi|427333393|gb|EKW94498.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0678]
gi|427336332|gb|EKW97310.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0672]
gi|429259288|gb|EKY42985.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0109]
gi|429261458|gb|EKY44900.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0010]
gi|444541943|gb|ELV21373.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0814]
gi|444549573|gb|ELV27810.1| ATP-dependent RNA helicase rhlE [Escherichia coli 09BKT078844]
gi|444551365|gb|ELV29325.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0815]
gi|444564136|gb|ELV41093.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0839]
gi|444566458|gb|ELV43291.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0816]
gi|444570293|gb|ELV46830.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0848]
gi|444581231|gb|ELV57093.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1753]
gi|444584375|gb|ELV60020.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1775]
gi|444598674|gb|ELV73587.1| ATP-dependent RNA helicase rhlE [Escherichia coli ATCC 700728]
gi|444599239|gb|ELV74129.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA11]
gi|444607041|gb|ELV81638.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1805]
gi|444613400|gb|ELV87659.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA19]
gi|444613514|gb|ELV87772.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA13]
gi|444621829|gb|ELV95797.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA2]
gi|444631187|gb|ELW04791.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA48]
gi|444631451|gb|ELW05049.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA47]
gi|444636219|gb|ELW09621.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA8]
gi|444646598|gb|ELW19600.1| ATP-dependent RNA helicase rhlE [Escherichia coli 7.1982]
gi|444649268|gb|ELW22169.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1781]
gi|444652588|gb|ELW25346.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1762]
gi|444661713|gb|ELW34001.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA35]
gi|444665877|gb|ELW37971.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4880]
gi|444671957|gb|ELW43717.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0083]
gi|444674008|gb|ELW45592.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0670]
Length = 455
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|16128765|ref|NP_415318.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|170020847|ref|YP_001725801.1| ATP-dependent RNA helicase RhlE [Escherichia coli ATCC 8739]
gi|170080456|ref|YP_001729776.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. K-12 substr.
DH10B]
gi|188494973|ref|ZP_03002243.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
gi|191166178|ref|ZP_03028012.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
gi|194433132|ref|ZP_03065414.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
1012]
gi|194438467|ref|ZP_03070557.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
gi|209918043|ref|YP_002292127.1| ATP-dependent RNA helicase RhlE [Escherichia coli SE11]
gi|218553381|ref|YP_002386294.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI1]
gi|218694271|ref|YP_002401938.1| ATP-dependent RNA helicase RhlE [Escherichia coli 55989]
gi|238900056|ref|YP_002925852.1| ATP-dependent RNA helicase RhlE [Escherichia coli BW2952]
gi|251784316|ref|YP_002998620.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
gi|253774200|ref|YP_003037031.1| ATP-dependent RNA helicase RhlE [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160874|ref|YP_003043982.1| ATP-dependent RNA helicase RhlE [Escherichia coli B str. REL606]
gi|254287688|ref|YP_003053436.1| RNA helicase [Escherichia coli BL21(DE3)]
gi|297521312|ref|ZP_06939698.1| ATP-dependent RNA helicase RhlE [Escherichia coli OP50]
gi|300816442|ref|ZP_07096664.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
gi|300907124|ref|ZP_07124790.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
gi|300920043|ref|ZP_07136502.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
gi|300922820|ref|ZP_07138906.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
gi|300929402|ref|ZP_07144871.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
gi|301303551|ref|ZP_07209673.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
gi|301327988|ref|ZP_07221153.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
gi|307313793|ref|ZP_07593410.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|309794255|ref|ZP_07688679.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
gi|312970872|ref|ZP_07785051.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
gi|331641310|ref|ZP_08342445.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
gi|378713847|ref|YP_005278740.1| DEAD/DEAH box helicase [Escherichia coli KO11FL]
gi|386279806|ref|ZP_10057482.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 4_1_40B]
gi|386596367|ref|YP_006092767.1| DEAD/DEAH box helicase [Escherichia coli DH1]
gi|386608116|ref|YP_006123602.1| RNA helicase [Escherichia coli W]
gi|386612960|ref|YP_006132626.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
gi|386708558|ref|YP_006172279.1| ATP-dependent RNA helicase RhlE [Escherichia coli W]
gi|387611339|ref|YP_006114455.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
gi|387620524|ref|YP_006128151.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
gi|388476882|ref|YP_489070.1| RNA helicase [Escherichia coli str. K-12 substr. W3110]
gi|404374120|ref|ZP_10979340.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 1_1_43]
gi|407468269|ref|YP_006785289.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482998|ref|YP_006780147.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483550|ref|YP_006771096.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415812962|ref|ZP_11504956.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
gi|415860752|ref|ZP_11534467.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
gi|415875932|ref|ZP_11542552.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 79-10]
gi|416286848|ref|ZP_11648633.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
gi|417120582|ref|ZP_11970140.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0246]
gi|417130674|ref|ZP_11975945.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0588]
gi|417152584|ref|ZP_11991375.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.0497]
gi|417229406|ref|ZP_12030992.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0959]
gi|417261194|ref|ZP_12048682.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.3916]
gi|417274502|ref|ZP_12061842.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.4168]
gi|417275438|ref|ZP_12062775.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2303]
gi|417290025|ref|ZP_12077308.1| ATP-dependent RNA helicase RhlE [Escherichia coli B41]
gi|417580058|ref|ZP_12230876.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_B2F1]
gi|417611890|ref|ZP_12262362.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_EH250]
gi|417633416|ref|ZP_12283635.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_S1191]
gi|417638120|ref|ZP_12288287.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli TX1999]
gi|417672819|ref|ZP_12322278.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
155-74]
gi|417831928|ref|ZP_12478449.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
01-09591]
gi|417864079|ref|ZP_12509126.1| hypothetical protein C22711_1012 [Escherichia coli O104:H4 str.
C227-11]
gi|417945085|ref|ZP_12588322.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH140A]
gi|417975121|ref|ZP_12615921.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH001]
gi|418042874|ref|ZP_12681057.1| ATP-dependent RNA helicase RhlE [Escherichia coli W26]
gi|418301699|ref|ZP_12913493.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli UMNF18]
gi|418958870|ref|ZP_13510779.1| DEAD/DEAH box helicase domain protein [Escherichia coli J53]
gi|419141314|ref|ZP_13686068.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6A]
gi|419146912|ref|ZP_13691603.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6B]
gi|419152706|ref|ZP_13697290.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6C]
gi|419158127|ref|ZP_13702644.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6D]
gi|419163060|ref|ZP_13707536.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6E]
gi|419168783|ref|ZP_13713177.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7A]
gi|419174163|ref|ZP_13718016.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7B]
gi|419179764|ref|ZP_13723387.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7C]
gi|419185324|ref|ZP_13728846.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7D]
gi|419190518|ref|ZP_13733985.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7E]
gi|419369058|ref|ZP_13910186.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC14A]
gi|419390192|ref|ZP_13931029.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15A]
gi|419395363|ref|ZP_13936146.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15B]
gi|419405890|ref|ZP_13946592.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15D]
gi|419411382|ref|ZP_13952053.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15E]
gi|419809588|ref|ZP_14334473.1| ATP-dependent RNA helicase RhlE [Escherichia coli O32:H37 str. P4]
gi|419925807|ref|ZP_14443635.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-15]
gi|419941037|ref|ZP_14457748.1| ATP-dependent RNA helicase RhlE [Escherichia coli 75]
gi|420347950|ref|ZP_14849344.1| ATP-dependent RNA helicase rhlE [Shigella boydii 965-58]
gi|420384419|ref|ZP_14883805.1| ATP-dependent RNA helicase rhlE [Escherichia coli EPECa12]
gi|421776878|ref|ZP_16213479.1| ATP-dependent RNA helicase RhlE [Escherichia coli AD30]
gi|422769987|ref|ZP_16823678.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|422785387|ref|ZP_16838126.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|422791573|ref|ZP_16844276.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|422819824|ref|ZP_16868034.1| ATP-dependent RNA helicase rhlE [Escherichia coli M919]
gi|422959077|ref|ZP_16971008.1| ATP-dependent RNA helicase rhlE [Escherichia coli H494]
gi|422991531|ref|ZP_16982302.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C227-11]
gi|422993473|ref|ZP_16984237.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C236-11]
gi|422998684|ref|ZP_16989440.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
09-7901]
gi|423007145|ref|ZP_16997888.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
04-8351]
gi|423008791|ref|ZP_16999529.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-3677]
gi|423022979|ref|ZP_17013682.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4404]
gi|423028131|ref|ZP_17018824.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4522]
gi|423033965|ref|ZP_17024649.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4623]
gi|423036831|ref|ZP_17027505.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041950|ref|ZP_17032617.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048640|ref|ZP_17039297.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052222|ref|ZP_17041030.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059188|ref|ZP_17047984.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423701599|ref|ZP_17676058.1| ATP-dependent RNA helicase rhlE [Escherichia coli H730]
gi|425118864|ref|ZP_18520586.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0569]
gi|425271545|ref|ZP_18663041.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW15901]
gi|427803888|ref|ZP_18970955.1| putative ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|427808473|ref|ZP_18975538.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|429723022|ref|ZP_19257911.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429775196|ref|ZP_19307194.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02030]
gi|429780383|ref|ZP_19312333.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429784436|ref|ZP_19316345.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02092]
gi|429789773|ref|ZP_19321645.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02093]
gi|429796003|ref|ZP_19327826.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02281]
gi|429801928|ref|ZP_19333703.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02318]
gi|429805560|ref|ZP_19337304.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02913]
gi|429811156|ref|ZP_19342855.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03439]
gi|429816507|ref|ZP_19348163.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-04080]
gi|429821715|ref|ZP_19353327.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03943]
gi|429907384|ref|ZP_19373352.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429911585|ref|ZP_19377541.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429917420|ref|ZP_19383360.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922458|ref|ZP_19388379.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429923311|ref|ZP_19389227.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932206|ref|ZP_19398100.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429933808|ref|ZP_19399698.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939467|ref|ZP_19405341.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429947109|ref|ZP_19412964.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949741|ref|ZP_19415589.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429958019|ref|ZP_19423848.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432368810|ref|ZP_19611911.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE10]
gi|432415781|ref|ZP_19658405.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE44]
gi|432484490|ref|ZP_19726410.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE212]
gi|432530124|ref|ZP_19767164.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE233]
gi|432533021|ref|ZP_19770012.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE234]
gi|432562727|ref|ZP_19799348.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE51]
gi|432579446|ref|ZP_19815877.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE56]
gi|432626403|ref|ZP_19862384.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE77]
gi|432636070|ref|ZP_19871952.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE81]
gi|432660024|ref|ZP_19895674.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE111]
gi|432669700|ref|ZP_19905241.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE119]
gi|432684601|ref|ZP_19919913.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE156]
gi|432690689|ref|ZP_19925928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE161]
gi|432703361|ref|ZP_19938480.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE171]
gi|432736297|ref|ZP_19971068.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE42]
gi|432749230|ref|ZP_19983844.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE29]
gi|432764118|ref|ZP_19998566.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE48]
gi|432804897|ref|ZP_20038838.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE91]
gi|432880532|ref|ZP_20097067.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE154]
gi|432933336|ref|ZP_20133004.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE184]
gi|432954097|ref|ZP_20146216.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE197]
gi|433046931|ref|ZP_20234342.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE120]
gi|433091124|ref|ZP_20277420.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE138]
gi|433129147|ref|ZP_20314616.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE163]
gi|433133962|ref|ZP_20319336.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE166]
gi|433172626|ref|ZP_20357179.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE232]
gi|433192762|ref|ZP_20376776.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE90]
gi|442595224|ref|ZP_21013074.1| ATP-dependent RNA helicase RhlE [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442599480|ref|ZP_21017198.1| ATP-dependent RNA helicase RhlE [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443616850|ref|YP_007380706.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O78]
gi|450212255|ref|ZP_21894522.1| ATP-dependent RNA helicase RhlE [Escherichia coli O08]
gi|450240632|ref|ZP_21899377.1| ATP-dependent RNA helicase RhlE [Escherichia coli S17]
gi|548730|sp|P25888.3|RHLE_ECOLI RecName: Full=ATP-dependent RNA helicase RhlE
gi|560801|gb|AAA53653.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
W3110]
gi|1787016|gb|AAC73884.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|4062355|dbj|BAA35457.1| RNA helicase [Escherichia coli str. K12 substr. W3110]
gi|169755775|gb|ACA78474.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
gi|169888291|gb|ACB01998.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
gi|188490172|gb|EDU65275.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
gi|190903787|gb|EDV63502.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
gi|194418629|gb|EDX34716.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
1012]
gi|194422691|gb|EDX38688.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
gi|209911302|dbj|BAG76376.1| putative ATP-dependent RNA helicase [Escherichia coli SE11]
gi|218351003|emb|CAU96707.1| RNA helicase [Escherichia coli 55989]
gi|218360149|emb|CAQ97698.1| RNA helicase [Escherichia coli IAI1]
gi|238863492|gb|ACR65490.1| RNA helicase [Escherichia coli BW2952]
gi|242376589|emb|CAQ31298.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
gi|253325244|gb|ACT29846.1| DEAD/DEAH box helicase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972775|gb|ACT38446.1| RNA helicase [Escherichia coli B str. REL606]
gi|253976995|gb|ACT42665.1| RNA helicase [Escherichia coli BL21(DE3)]
gi|260450056|gb|ACX40478.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
gi|300401169|gb|EFJ84707.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
gi|300412990|gb|EFJ96300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
gi|300420852|gb|EFK04163.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
gi|300462602|gb|EFK26095.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
gi|300531132|gb|EFK52194.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
gi|300841050|gb|EFK68810.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
gi|300845553|gb|EFK73313.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
gi|306906433|gb|EFN36947.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|308122160|gb|EFO59422.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
gi|309701075|emb|CBJ00373.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
gi|310336633|gb|EFQ01800.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
gi|315060033|gb|ADT74360.1| RNA helicase [Escherichia coli W]
gi|315135447|dbj|BAJ42606.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
gi|315257782|gb|EFU37750.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
gi|320178508|gb|EFW53473.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
gi|323172087|gb|EFZ57726.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
gi|323379408|gb|ADX51676.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11FL]
gi|323942670|gb|EGB38835.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|323963044|gb|EGB58615.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|323971962|gb|EGB67183.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|331038108|gb|EGI10328.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
gi|332091029|gb|EGI96119.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
155-74]
gi|332342129|gb|AEE55463.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
gi|339413797|gb|AEJ55469.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli UMNF18]
gi|340735584|gb|EGR64641.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
01-09591]
gi|341917368|gb|EGT66984.1| hypothetical protein C22711_1012 [Escherichia coli O104:H4 str.
C227-11]
gi|342363259|gb|EGU27369.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH140A]
gi|342929072|gb|EGU97794.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 79-10]
gi|344195112|gb|EGV49182.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH001]
gi|345343247|gb|EGW75637.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_B2F1]
gi|345365239|gb|EGW97348.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_EH250]
gi|345390130|gb|EGX19929.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_S1191]
gi|345395107|gb|EGX24859.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli TX1999]
gi|354856533|gb|EHF16991.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
04-8351]
gi|354857780|gb|EHF18233.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C227-11]
gi|354864548|gb|EHF24977.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C236-11]
gi|354874861|gb|EHF35227.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
09-7901]
gi|354878821|gb|EHF39168.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4404]
gi|354882613|gb|EHF42935.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-3677]
gi|354884235|gb|EHF44548.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4522]
gi|354887292|gb|EHF47567.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4623]
gi|354900487|gb|EHF60621.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354903632|gb|EHF63732.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354905995|gb|EHF66077.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354916912|gb|EHF76882.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354920973|gb|EHF80898.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|359331489|dbj|BAL37936.1| RNA helicase [Escherichia coli str. K-12 substr. MDS42]
gi|371595351|gb|EHN84201.1| ATP-dependent RNA helicase rhlE [Escherichia coli H494]
gi|377998929|gb|EHV62016.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6A]
gi|378000431|gb|EHV63502.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6B]
gi|378002941|gb|EHV65990.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6C]
gi|378012216|gb|EHV75148.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6D]
gi|378015762|gb|EHV78653.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6E]
gi|378018001|gb|EHV80868.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7A]
gi|378026949|gb|EHV89581.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7C]
gi|378032742|gb|EHV95323.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7D]
gi|378037020|gb|EHV99555.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7B]
gi|378041755|gb|EHW04213.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7E]
gi|378221719|gb|EHX81964.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC14A]
gi|378242955|gb|EHY02903.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15A]
gi|378250840|gb|EHY10743.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15B]
gi|378257173|gb|EHY17015.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15D]
gi|378261059|gb|EHY20856.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15E]
gi|383404250|gb|AFH10493.1| ATP-dependent RNA helicase RhlE [Escherichia coli W]
gi|383474131|gb|EID66127.1| ATP-dependent RNA helicase RhlE [Escherichia coli W26]
gi|384378339|gb|EIE36221.1| DEAD/DEAH box helicase domain protein [Escherichia coli J53]
gi|385157769|gb|EIF19760.1| ATP-dependent RNA helicase RhlE [Escherichia coli O32:H37 str. P4]
gi|385536439|gb|EIF83332.1| ATP-dependent RNA helicase rhlE [Escherichia coli M919]
gi|385711895|gb|EIG48851.1| ATP-dependent RNA helicase rhlE [Escherichia coli H730]
gi|386123053|gb|EIG71654.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 4_1_40B]
gi|386149237|gb|EIG95669.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0246]
gi|386153782|gb|EIH05063.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0588]
gi|386169308|gb|EIH35816.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.0497]
gi|386205896|gb|EII10402.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0959]
gi|386224321|gb|EII46656.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.3916]
gi|386232930|gb|EII64915.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.4168]
gi|386242091|gb|EII79004.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2303]
gi|386256063|gb|EIJ05751.1| ATP-dependent RNA helicase RhlE [Escherichia coli B41]
gi|388385529|gb|EIL47208.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-15]
gi|388401755|gb|EIL62377.1| ATP-dependent RNA helicase RhlE [Escherichia coli 75]
gi|391270091|gb|EIQ28988.1| ATP-dependent RNA helicase rhlE [Shigella boydii 965-58]
gi|391309255|gb|EIQ66932.1| ATP-dependent RNA helicase rhlE [Escherichia coli EPECa12]
gi|404292334|gb|EJZ49160.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 1_1_43]
gi|406778712|gb|AFS58136.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055295|gb|AFS75346.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064304|gb|AFS85351.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408197166|gb|EKI22433.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW15901]
gi|408457992|gb|EKJ81782.1| ATP-dependent RNA helicase RhlE [Escherichia coli AD30]
gi|408572879|gb|EKK48760.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0569]
gi|412962070|emb|CCK45984.1| putative ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|412968652|emb|CCJ43277.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|429349931|gb|EKY86666.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02030]
gi|429350885|gb|EKY87608.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429351021|gb|EKY87742.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02092]
gi|429365299|gb|EKZ01912.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02093]
gi|429366250|gb|EKZ02853.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02281]
gi|429368813|gb|EKZ05396.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02318]
gi|429381220|gb|EKZ17707.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02913]
gi|429382188|gb|EKZ18653.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03439]
gi|429383623|gb|EKZ20082.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03943]
gi|429395454|gb|EKZ31820.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-04080]
gi|429396668|gb|EKZ33016.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429397546|gb|EKZ33892.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429409274|gb|EKZ45504.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429417734|gb|EKZ53881.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429421403|gb|EKZ57524.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429423143|gb|EKZ59251.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429427145|gb|EKZ63230.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429434027|gb|EKZ70056.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429438014|gb|EKZ74008.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429443370|gb|EKZ79322.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429449473|gb|EKZ85372.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429455349|gb|EKZ91205.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430888022|gb|ELC10745.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE10]
gi|430942326|gb|ELC62459.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE44]
gi|431017641|gb|ELD31096.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE212]
gi|431056498|gb|ELD65999.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE233]
gi|431062742|gb|ELD72002.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE234]
gi|431097945|gb|ELE03270.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE51]
gi|431107436|gb|ELE11601.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE56]
gi|431164351|gb|ELE64742.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE77]
gi|431172964|gb|ELE73045.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE81]
gi|431201896|gb|ELF00592.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE111]
gi|431212870|gb|ELF10791.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE119]
gi|431224108|gb|ELF21337.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE156]
gi|431229075|gb|ELF25727.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE161]
gi|431245926|gb|ELF40204.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE171]
gi|431285837|gb|ELF76672.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE42]
gi|431299242|gb|ELF88817.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE29]
gi|431312697|gb|ELG00686.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE48]
gi|431356509|gb|ELG43199.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE91]
gi|431412760|gb|ELG95559.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE154]
gi|431454978|gb|ELH35334.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE184]
gi|431469395|gb|ELH49324.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE197]
gi|431571170|gb|ELI44070.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE120]
gi|431613756|gb|ELI82925.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE138]
gi|431650869|gb|ELJ18177.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE163]
gi|431662039|gb|ELJ28849.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE166]
gi|431695617|gb|ELJ60919.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE232]
gi|431720457|gb|ELJ84486.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE90]
gi|441604670|emb|CCP98208.1| ATP-dependent RNA helicase RhlE [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441651750|emb|CCQ02695.1| ATP-dependent RNA helicase RhlE [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443421358|gb|AGC86262.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O78]
gi|449322017|gb|EMD12021.1| ATP-dependent RNA helicase RhlE [Escherichia coli O08]
gi|449324310|gb|EMD14245.1| ATP-dependent RNA helicase RhlE [Escherichia coli S17]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|422765321|ref|ZP_16819048.1| DEAD/DEAH box helicase [Escherichia coli E1520]
gi|323938152|gb|EGB34412.1| DEAD/DEAH box helicase [Escherichia coli E1520]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|331651800|ref|ZP_08352819.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
gi|417627721|ref|ZP_12277968.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_MHI813]
gi|432453551|ref|ZP_19695788.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE193]
gi|433032291|ref|ZP_20220065.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE112]
gi|331050078|gb|EGI22136.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
gi|345378025|gb|EGX09956.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_MHI813]
gi|430973690|gb|ELC90635.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE193]
gi|431558677|gb|ELI32286.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE112]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|432552747|ref|ZP_19789477.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE47]
gi|431086319|gb|ELD92342.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE47]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|117622979|ref|YP_851892.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
gi|115512103|gb|ABJ00178.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|157160272|ref|YP_001457590.1| ATP-dependent RNA helicase RhlE [Escherichia coli HS]
gi|157065952|gb|ABV05207.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli HS]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|432542177|ref|ZP_19779033.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE236]
gi|432547647|ref|ZP_19784434.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE237]
gi|432620931|ref|ZP_19856972.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE76]
gi|432814385|ref|ZP_20048175.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE115]
gi|431076431|gb|ELD83926.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE236]
gi|431083583|gb|ELD89755.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE237]
gi|431161397|gb|ELE61868.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE76]
gi|431366608|gb|ELG53105.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE115]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|386702440|ref|YP_006166277.1| ATP-dependent RNA helicase RhlE [Escherichia coli KO11FL]
gi|383393967|gb|AFH18925.1| ATP-dependent RNA helicase RhlE [Escherichia coli KO11FL]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|331656814|ref|ZP_08357776.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
gi|331682303|ref|ZP_08382922.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
gi|450186646|ref|ZP_21889564.1| ATP-dependent RNA helicase RhlE [Escherichia coli SEPT362]
gi|331055062|gb|EGI27071.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
gi|331079934|gb|EGI51113.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
gi|449324165|gb|EMD14102.1| ATP-dependent RNA helicase RhlE [Escherichia coli SEPT362]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|26246770|ref|NP_752810.1| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073]
gi|110641001|ref|YP_668729.1| ATP-dependent RNA helicase RhlE [Escherichia coli 536]
gi|191174652|ref|ZP_03036132.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
gi|222155523|ref|YP_002555662.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
gi|227884241|ref|ZP_04002046.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
gi|300939831|ref|ZP_07154469.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
gi|300992077|ref|ZP_07179779.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
gi|300993271|ref|ZP_07180318.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
gi|301051284|ref|ZP_07198110.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
gi|306812801|ref|ZP_07446994.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
gi|331646014|ref|ZP_08347117.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
gi|386628337|ref|YP_006148057.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i2']
gi|386633257|ref|YP_006152976.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i14']
gi|386638150|ref|YP_006104948.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
gi|387616054|ref|YP_006119076.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
857C]
gi|416335171|ref|ZP_11671882.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
gi|417661322|ref|ZP_12310903.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
gi|419699658|ref|ZP_14227271.1| ATP-dependent RNA helicase RhlE [Escherichia coli SCI-07]
gi|422364701|ref|ZP_16445212.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
gi|422379081|ref|ZP_16459284.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
gi|432380422|ref|ZP_19623377.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE15]
gi|432386249|ref|ZP_19629145.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE16]
gi|432396679|ref|ZP_19639464.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE25]
gi|432405614|ref|ZP_19648334.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE28]
gi|432410799|ref|ZP_19653480.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE39]
gi|432430847|ref|ZP_19673290.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE187]
gi|432435375|ref|ZP_19677774.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE188]
gi|432455662|ref|ZP_19697861.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE201]
gi|432470167|ref|ZP_19712219.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE206]
gi|432494600|ref|ZP_19736416.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE214]
gi|432503439|ref|ZP_19745174.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE220]
gi|432512992|ref|ZP_19750227.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE224]
gi|432522884|ref|ZP_19760021.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE230]
gi|432567630|ref|ZP_19804155.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE53]
gi|432591850|ref|ZP_19828177.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE60]
gi|432606617|ref|ZP_19842810.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE67]
gi|432610468|ref|ZP_19846639.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE72]
gi|432645226|ref|ZP_19881025.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE86]
gi|432650259|ref|ZP_19886019.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE87]
gi|432655024|ref|ZP_19890736.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE93]
gi|432679216|ref|ZP_19914615.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE143]
gi|432698104|ref|ZP_19933270.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE169]
gi|432712457|ref|ZP_19947506.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE8]
gi|432722309|ref|ZP_19957232.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE17]
gi|432726851|ref|ZP_19961732.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE18]
gi|432731462|ref|ZP_19966298.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE45]
gi|432740537|ref|ZP_19975258.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE23]
gi|432744724|ref|ZP_19979423.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE43]
gi|432758541|ref|ZP_19993042.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE46]
gi|432782638|ref|ZP_20016822.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE63]
gi|432843102|ref|ZP_20076437.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE141]
gi|432893524|ref|ZP_20105536.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE165]
gi|432903336|ref|ZP_20112802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE194]
gi|432942848|ref|ZP_20140002.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE183]
gi|432970909|ref|ZP_20159787.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE207]
gi|432977456|ref|ZP_20166279.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE209]
gi|432984426|ref|ZP_20173163.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE215]
gi|432989850|ref|ZP_20178516.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE217]
gi|432994527|ref|ZP_20183141.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE218]
gi|432998946|ref|ZP_20187484.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE223]
gi|433037791|ref|ZP_20225403.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE113]
gi|433057090|ref|ZP_20244173.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE124]
gi|433076958|ref|ZP_20263520.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE131]
gi|433081679|ref|ZP_20268153.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE133]
gi|433086407|ref|ZP_20272802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE137]
gi|433100308|ref|ZP_20286415.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE145]
gi|433110072|ref|ZP_20295946.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE150]
gi|433114682|ref|ZP_20300496.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE153]
gi|433124341|ref|ZP_20309928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE160]
gi|433138401|ref|ZP_20323685.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE167]
gi|433143374|ref|ZP_20328540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE168]
gi|433148188|ref|ZP_20333252.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE174]
gi|433187583|ref|ZP_20371700.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE88]
gi|433197356|ref|ZP_20381279.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE94]
gi|433206916|ref|ZP_20390611.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE97]
gi|433211664|ref|ZP_20395277.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE99]
gi|442606347|ref|ZP_21021147.1| ATP-dependent RNA helicase RhlE [Escherichia coli Nissle 1917]
gi|26107169|gb|AAN79353.1|AE016757_257 Putative ATP-dependent RNA helicase rhlE [Escherichia coli CFT073]
gi|110342593|gb|ABG68830.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 536]
gi|190905071|gb|EDV64730.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
gi|222032528|emb|CAP75267.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
gi|227838993|gb|EEJ49459.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
gi|300297043|gb|EFJ53428.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
gi|300305406|gb|EFJ59926.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
gi|300406679|gb|EFJ90217.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
gi|300455363|gb|EFK18856.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
gi|305853564|gb|EFM54003.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
gi|307552642|gb|ADN45417.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
gi|312945315|gb|ADR26142.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
857C]
gi|315292604|gb|EFU51956.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
gi|320196708|gb|EFW71331.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
gi|324009618|gb|EGB78837.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
gi|330910540|gb|EGH39050.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
gi|331044766|gb|EGI16893.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
gi|355419236|gb|AER83433.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i2']
gi|355424156|gb|AER88352.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i14']
gi|380349203|gb|EIA37478.1| ATP-dependent RNA helicase RhlE [Escherichia coli SCI-07]
gi|430909170|gb|ELC30555.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE16]
gi|430910737|gb|ELC32037.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE15]
gi|430916999|gb|ELC38047.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE25]
gi|430931768|gb|ELC52202.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE28]
gi|430937297|gb|ELC57552.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE39]
gi|430955287|gb|ELC74070.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE187]
gi|430965703|gb|ELC83112.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE188]
gi|430984389|gb|ELD01012.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE201]
gi|430999345|gb|ELD15427.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE206]
gi|431027205|gb|ELD40268.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE214]
gi|431041485|gb|ELD51985.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE220]
gi|431044031|gb|ELD54311.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE224]
gi|431054194|gb|ELD63775.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE230]
gi|431102578|gb|ELE07392.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE53]
gi|431131766|gb|ELE33782.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE60]
gi|431140069|gb|ELE41846.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE67]
gi|431150809|gb|ELE51851.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE72]
gi|431182457|gb|ELE82274.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE86]
gi|431192815|gb|ELE92159.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE87]
gi|431193934|gb|ELE93204.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE93]
gi|431224276|gb|ELF21503.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE143]
gi|431246244|gb|ELF40510.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE169]
gi|431258590|gb|ELF51353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE8]
gi|431267386|gb|ELF58903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE17]
gi|431274639|gb|ELF65684.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE18]
gi|431277717|gb|ELF68721.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE45]
gi|431285128|gb|ELF75964.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE23]
gi|431294200|gb|ELF84380.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE43]
gi|431311130|gb|ELF99308.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE46]
gi|431331037|gb|ELG18300.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE63]
gi|431396873|gb|ELG80335.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE141]
gi|431424504|gb|ELH06600.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE165]
gi|431435780|gb|ELH17388.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE194]
gi|431452735|gb|ELH33146.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE183]
gi|431480967|gb|ELH60681.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE209]
gi|431486046|gb|ELH65703.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE207]
gi|431496725|gb|ELH76303.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE217]
gi|431505005|gb|ELH83628.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE215]
gi|431508740|gb|ELH87011.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE218]
gi|431513286|gb|ELH91369.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE223]
gi|431553961|gb|ELI27843.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE113]
gi|431573658|gb|ELI46455.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE124]
gi|431600236|gb|ELI69908.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE131]
gi|431605514|gb|ELI74903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE133]
gi|431609064|gb|ELI78397.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE137]
gi|431621765|gb|ELI90555.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE145]
gi|431630708|gb|ELI99036.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE150]
gi|431636392|gb|ELJ04523.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE153]
gi|431649148|gb|ELJ16507.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE160]
gi|431664579|gb|ELJ31313.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE167]
gi|431665476|gb|ELJ32194.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE168]
gi|431676301|gb|ELJ42421.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE174]
gi|431708583|gb|ELJ73091.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE88]
gi|431725002|gb|ELJ88915.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE94]
gi|431732132|gb|ELJ95588.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE97]
gi|431735862|gb|ELJ99206.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE99]
gi|441712423|emb|CCQ07124.1| ATP-dependent RNA helicase RhlE [Escherichia coli Nissle 1917]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|432945988|ref|ZP_20141726.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE196]
gi|433042299|ref|ZP_20229823.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE117]
gi|431462321|gb|ELH42535.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE196]
gi|431559502|gb|ELI33055.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE117]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|425304306|ref|ZP_18694089.1| ATP-dependent RNA helicase rhlE [Escherichia coli N1]
gi|408231316|gb|EKI54593.1| ATP-dependent RNA helicase rhlE [Escherichia coli N1]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|425287375|ref|ZP_18678299.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3006]
gi|408218139|gb|EKI42372.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3006]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|417711406|ref|ZP_12360409.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
gi|417716231|ref|ZP_12365163.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
gi|417826857|ref|ZP_12473430.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri J1713]
gi|420319296|ref|ZP_14821149.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 2850-71]
gi|333009786|gb|EGK29235.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
gi|333020451|gb|EGK39714.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
gi|335576625|gb|EGM62870.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri J1713]
gi|391253484|gb|EIQ12657.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 2850-71]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|301020713|ref|ZP_07184781.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
gi|419917866|ref|ZP_14436087.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD2]
gi|300398524|gb|EFJ82062.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
gi|388392900|gb|EIL54301.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD2]
Length = 452
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|82543242|ref|YP_407189.1| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227]
gi|81244653|gb|ABB65361.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|82776130|ref|YP_402477.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197]
gi|81240278|gb|ABB60988.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|70945363|ref|XP_742509.1| ATP-dependent RNA helicase [Plasmodium chabaudi chabaudi]
gi|56521533|emb|CAH79576.1| ATP-dependent RNA helicase, putative [Plasmodium chabaudi chabaudi]
Length = 429
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D K G F+ + L E+L G+ ++GY+ P+PIQ ++IP+ L G++++A A+
Sbjct: 42 DPRYKTEDVTKTKGNEFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAK 101
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA F IP+LEK TH + ++ LIL PTRELALQT +KELGK K+Q
Sbjct: 102 NGTGKTAAFAIPLLEKCNTHK--NFIQGLILVPTRELALQTSAMIKELGKHMKIQCMVTT 159
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFL 169
GG S+ RL+ + I+ TPGR L
Sbjct: 160 GGTSLREDIMRLYNAVHILCGTPGRIL 186
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T +KELGK K+Q GG S+ RL+ + I+ TPGR L + + LS
Sbjct: 140 TSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYNAVHILCGTPGRILDLANKDVANLSGC 199
Query: 245 QLSLTD 250
+ + D
Sbjct: 200 HIMVMD 205
>gi|422970694|ref|ZP_16974206.1| ATP-dependent RNA helicase rhlE [Escherichia coli TA124]
gi|371600132|gb|EHN88909.1| ATP-dependent RNA helicase rhlE [Escherichia coli TA124]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|320538877|ref|ZP_08038553.1| putative RNA helicase [Serratia symbiotica str. Tucson]
gi|320031037|gb|EFW13040.1| putative RNA helicase [Serratia symbiotica str. Tucson]
Length = 437
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 93/137 (67%), Gaps = 4/137 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+L+ V ++GY+ PTPIQR+ IP+VL GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FKTLGLSAEILRAVEEQGYREPTPIQRQAIPMVLAGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H + VRALIL+PTRELA Q + V K+ +L+S + GG S++ Q +L
Sbjct: 63 LSQHEQPAKGRRPVRALILTPTRELAAQIGENVDAYSKYLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHI 171
DI+VATPGR L +
Sbjct: 123 RGGVDILVATPGRLLDL 139
>gi|253826788|ref|ZP_04869673.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
98-5491]
gi|313142197|ref|ZP_07804390.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
gi|253510194|gb|EES88853.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
98-5491]
gi|313131228|gb|EFR48845.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
Length = 505
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 94/140 (67%), Gaps = 3/140 (2%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+K KK+ GF FGL +VLKG+ + G+K P+PIQ++ IP++L+G DV+A A+TG+GKTA
Sbjct: 2 EKMKKISSGFAEFGLKSKVLKGIDEAGFKEPSPIQKEVIPVILDGLDVIAQAQTGTGKTA 61
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
F +P++ +L+ + + LI++PTREL +Q V +LGK+ K+++ L GG +
Sbjct: 62 AFALPLINELRHDGS---IEVLIVAPTRELVMQIGDEVFKLGKYNKVRTVSLFGGQPIRR 118
Query: 150 QFARLHASPDIVVATPGRFL 169
Q L P IV+ATPGR L
Sbjct: 119 QIELLEKKPQIVIATPGRLL 138
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP++L+G DV+A A+TG+GKTA F
Sbjct: 35 IQKEVIPVILDGLDVIAQAQTGTGKTAAF 63
>gi|71031074|ref|XP_765179.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
gi|68352135|gb|EAN32896.1| ATP-dependent RNA helicase, putative [Theileria parva]
Length = 417
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D K G F+ + L E+L G+ ++G++ P+PIQ ++IP+ L G D++A A+
Sbjct: 30 DKRYKTEDVTKTRGSEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALAGHDILARAK 89
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA F+IP+L+KL T A ++ LIL PTRELALQT VKELGK+ ++Q
Sbjct: 90 NGTGKTAAFVIPLLQKLDTSEAQ--IQGLILLPTRELALQTSAVVKELGKYLEVQCMVST 147
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHI 171
GG S+ N RL+ I+ TPGR L +
Sbjct: 148 GGTSLRNDIMRLYKPVHILCGTPGRILDL 176
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 174 EMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 233
E+ L+ S++ VKELGK+ ++Q GG S+ N RL+ I+ TPGR L +
Sbjct: 123 ELALQTSAV------VKELGKYLEVQCMVSTGGTSLRNDIMRLYKPVHILCGTPGRILDL 176
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333
+ +++IP+ L G D++A A+ G+GKTA F+ + D I
Sbjct: 70 IQEESIPIALAGHDILARAKNGTGKTAAFVIPLLQKLDTSEAQI 113
>gi|417137678|ref|ZP_11981468.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0259]
gi|386159242|gb|EIH15575.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0259]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|354584019|ref|ZP_09002916.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353197281|gb|EHB62774.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 490
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 91/149 (61%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ + +LK + K YK PTPIQ + IP VL GRD++ A+TG+GKTA F +PM++
Sbjct: 3 FQDLNISPIILKALAKENYKTPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQL 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L G +RAL+LSPTRELALQ VK +FTKL+ST ++GG S Q L
Sbjct: 63 LNEQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERAL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI++ATPGR + ++ + + L ++
Sbjct: 123 QQGADILIATPGRLIDLINQKHVDLQHVE 151
>gi|301646226|ref|ZP_07246122.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
146-1]
gi|301075563|gb|EFK90369.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
Length = 446
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|390953372|ref|YP_006417130.1| DNA/RNA helicase [Aequorivita sublithincola DSM 14238]
gi|390419358|gb|AFL80115.1| DNA/RNA helicase, superfamily II [Aequorivita sublithincola DSM
14238]
Length = 423
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL +L+ + K+GY+ P+ IQ+K IPL+LE +DV+A A+TGSGKTA F +PML+
Sbjct: 3 FKSLGLSDALLQAISKKGYETPSAIQKKAIPLILERKDVLASAQTGSGKTAGFALPMLQI 62
Query: 99 LKTHAA--TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L + A VRALIL+PTRELA Q +E +FT L+ST + GG + Q L
Sbjct: 63 LNSEPAFRKRPVRALILTPTRELAAQVEDEFREYSEFTDLRSTVIFGGVGANPQIKALRN 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + L LS ++
Sbjct: 123 GVDILVATPGRLLDLENQNALSLSKVE 149
>gi|417690323|ref|ZP_12339547.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
gi|332088993|gb|EGI94105.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
Length = 441
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|422377585|ref|ZP_16457824.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS 60-1]
gi|324011108|gb|EGB80327.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 60-1]
Length = 438
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|432601332|ref|ZP_19837581.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE66]
gi|431143165|gb|ELE44903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE66]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|193069347|ref|ZP_03050302.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
gi|432673792|ref|ZP_19909281.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE142]
gi|192957300|gb|EDV87748.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
gi|431217166|gb|ELF14746.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE142]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|432860541|ref|ZP_20085680.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE146]
gi|431407525|gb|ELG90736.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE146]
Length = 463
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITCQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|366160940|ref|ZP_09460802.1| ATP-dependent RNA helicase RhlE [Escherichia sp. TW09308]
gi|432371534|ref|ZP_19614587.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
gi|430898972|gb|ELC21078.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LISREPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L D++VATPGR L + + +KL I++ +
Sbjct: 95 VRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|422353494|ref|ZP_16434247.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
117-3]
gi|324018526|gb|EGB87745.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 117-3]
Length = 442
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|145347521|ref|XP_001418212.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578441|gb|ABO96505.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 419
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 106/174 (60%), Gaps = 3/174 (1%)
Query: 6 PEDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQR 65
P+ ++D T+ + D+ T D G F+ + L E+L G+ ++G++ P+PIQ
Sbjct: 15 PQQNGNWKD-TLALPPRDERYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQE 73
Query: 66 KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125
++IP+ L GRD++A A+ G+GKTA F IP+LEK+ T + + ++A+IL PTRELALQT +
Sbjct: 74 ESIPIALTGRDILARAKNGTGKTAAFTIPILEKVDT--SKNIIQAVILVPTRELALQTSQ 131
Query: 126 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
KELGK + GG S+ + RLH IVVATPGR + + + KL
Sbjct: 132 VAKELGKHLGVAVMVTTGGTSLKDDIMRLHQPVHIVVATPGRLVDLASKSVAKL 185
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 241
T + KELGK + GG S+ + RLH IVVATPGR + + + KL
Sbjct: 129 TSQVAKELGKHLGVAVMVTTGGTSLKDDIMRLHQPVHIVVATPGRLVDLASKSVAKL 185
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
+ +++IP+ L GRD++A A+ G+GKTA F + D
Sbjct: 71 IQEESIPIALTGRDILARAKNGTGKTAAFTIPILEKVD 108
>gi|373487181|ref|ZP_09577850.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
gi|372010063|gb|EHP10676.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
Length = 438
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 95/137 (69%), Gaps = 6/137 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+L+ V ++GY+ PTPIQ + IP+VL+GRD++ A+TG+GKTA F +PML++
Sbjct: 3 FDTLGLLPELLRAVREQGYETPTPIQAQAIPVVLQGRDLMGGAQTGTGKTAAFTLPMLQR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS +RAL+L+PTRELA+Q + ++ GK L+ST + GG +++ Q A
Sbjct: 63 LAPQASTSTSPAKHPIRALVLTPTRELAMQVEESIRTYGKHIPLRSTTIFGGVNINPQIA 122
Query: 153 RLHASPDIVVATPGRFL 169
L +I+VATPGR L
Sbjct: 123 ALRKGVEILVATPGRLL 139
>gi|420099387|ref|ZP_14610620.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9455]
gi|394423123|gb|EJE96397.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9455]
Length = 376
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|422368931|ref|ZP_16449335.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS 16-3]
gi|315299273|gb|EFU58525.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 16-3]
Length = 446
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|301024520|ref|ZP_07188196.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
196-1]
gi|299880373|gb|EFI88584.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
Length = 438
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|260854088|ref|YP_003227979.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
11368]
gi|415785215|ref|ZP_11492829.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
gi|417295208|ref|ZP_12082464.1| ATP-dependent RNA helicase RhlE [Escherichia coli 900105 (10e)]
gi|419207940|ref|ZP_13751063.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8C]
gi|419214487|ref|ZP_13757510.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8D]
gi|419253551|ref|ZP_13796090.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10A]
gi|419259612|ref|ZP_13802056.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10B]
gi|419265751|ref|ZP_13808132.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10C]
gi|419271293|ref|ZP_13813617.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10D]
gi|419879319|ref|ZP_14400758.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9534]
gi|419886119|ref|ZP_14406771.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9545]
gi|419903986|ref|ZP_14422997.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9942]
gi|419910328|ref|ZP_14428852.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10026]
gi|420112198|ref|ZP_14622003.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9553]
gi|420117106|ref|ZP_14626474.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10021]
gi|420123029|ref|ZP_14631931.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10030]
gi|420129457|ref|ZP_14637989.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10224]
gi|420135205|ref|ZP_14643297.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9952]
gi|424746487|ref|ZP_18174725.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424762635|ref|ZP_18190136.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425377700|ref|ZP_18762068.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1865]
gi|257752737|dbj|BAI24239.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
gi|323155682|gb|EFZ41853.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
gi|378061114|gb|EHW23300.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8C]
gi|378067249|gb|EHW29374.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8D]
gi|378105091|gb|EHW66738.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10A]
gi|378114392|gb|EHW75948.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10B]
gi|378117330|gb|EHW78846.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10C]
gi|378120824|gb|EHW82286.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10D]
gi|386261571|gb|EIJ17036.1| ATP-dependent RNA helicase RhlE [Escherichia coli 900105 (10e)]
gi|388332252|gb|EIK98931.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9534]
gi|388347103|gb|EIL12797.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9545]
gi|388368577|gb|EIL32204.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9942]
gi|388371735|gb|EIL35193.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10026]
gi|394382613|gb|EJE60242.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10224]
gi|394397074|gb|EJE73380.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9553]
gi|394402533|gb|EJE78247.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10021]
gi|394417988|gb|EJE91696.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10030]
gi|394420435|gb|EJE93966.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9952]
gi|408308877|gb|EKJ26102.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1865]
gi|421940874|gb|EKT98310.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421948130|gb|EKU05171.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|157155652|ref|YP_001461987.1| ATP-dependent RNA helicase RhlE [Escherichia coli E24377A]
gi|193064450|ref|ZP_03045531.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
gi|194428200|ref|ZP_03060743.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
gi|260843040|ref|YP_003220818.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
gi|293433058|ref|ZP_06661486.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
gi|300824257|ref|ZP_07104374.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
gi|331676532|ref|ZP_08377228.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
gi|332282359|ref|ZP_08394772.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
gi|415803124|ref|ZP_11500296.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
gi|415827804|ref|ZP_11514573.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1357]
gi|416345038|ref|ZP_11678681.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
gi|417144495|ref|ZP_11986301.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2264]
gi|417161484|ref|ZP_11997720.1| ATP-dependent RNA helicase RhlE [Escherichia coli 99.0741]
gi|417177330|ref|ZP_12006811.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2608]
gi|417180033|ref|ZP_12007741.1| ATP-dependent RNA helicase RhlE [Escherichia coli 93.0624]
gi|417223820|ref|ZP_12027111.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.154]
gi|417242638|ref|ZP_12037855.1| ATP-dependent RNA helicase RhlE [Escherichia coli 9.0111]
gi|417254717|ref|ZP_12046468.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0967]
gi|417267555|ref|ZP_12054916.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.3884]
gi|417601131|ref|ZP_12251713.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_94C]
gi|417606902|ref|ZP_12257426.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_DG131-3]
gi|417622131|ref|ZP_12272456.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_H.1.8]
gi|417665935|ref|ZP_12315497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_O31]
gi|419225574|ref|ZP_13768459.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9A]
gi|419236763|ref|ZP_13779507.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9C]
gi|419242295|ref|ZP_13784942.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9D]
gi|419247811|ref|ZP_13790418.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9E]
gi|419277008|ref|ZP_13819269.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10E]
gi|419282779|ref|ZP_13824991.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10F]
gi|419288330|ref|ZP_13830440.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11A]
gi|419293682|ref|ZP_13835737.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11B]
gi|419299089|ref|ZP_13841102.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11C]
gi|419305383|ref|ZP_13847293.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11D]
gi|419310421|ref|ZP_13852292.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11E]
gi|419315707|ref|ZP_13857531.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12A]
gi|419321653|ref|ZP_13863385.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12B]
gi|419327782|ref|ZP_13869410.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12C]
gi|419333303|ref|ZP_13874859.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12D]
gi|419338624|ref|ZP_13880109.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12E]
gi|419374460|ref|ZP_13915511.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14B]
gi|419379737|ref|ZP_13920712.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14C]
gi|419384945|ref|ZP_13925844.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14D]
gi|419804719|ref|ZP_14329872.1| ATP-dependent RNA helicase RhlE [Escherichia coli AI27]
gi|419870728|ref|ZP_14392820.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H2 str.
CVM9450]
gi|419928780|ref|ZP_14446487.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-1]
gi|419952234|ref|ZP_14468408.1| ATP-dependent RNA helicase RhlE [Escherichia coli CUMT8]
gi|420390263|ref|ZP_14889531.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli EPEC C342-62]
gi|422775387|ref|ZP_16829043.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|423708718|ref|ZP_17683096.1| ATP-dependent RNA helicase rhlE [Escherichia coli B799]
gi|425423250|ref|ZP_18804418.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1288]
gi|432375905|ref|ZP_19618913.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE12]
gi|432480171|ref|ZP_19722133.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE210]
gi|432812897|ref|ZP_20046742.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE101]
gi|432830770|ref|ZP_20064353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE135]
gi|432833878|ref|ZP_20067420.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE136]
gi|432966894|ref|ZP_20155810.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE203]
gi|157077682|gb|ABV17390.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
E24377A]
gi|192928912|gb|EDV82525.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
gi|194413760|gb|EDX30039.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
gi|257758187|dbj|BAI29684.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
gi|291323877|gb|EFE63299.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
gi|300523231|gb|EFK44300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
gi|320198986|gb|EFW73583.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
gi|323159727|gb|EFZ45705.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
gi|323185047|gb|EFZ70413.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1357]
gi|323947045|gb|EGB43058.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|331075221|gb|EGI46519.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
gi|332104711|gb|EGJ08057.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
gi|345353137|gb|EGW85373.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_94C]
gi|345364307|gb|EGW96433.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_DG131-3]
gi|345385199|gb|EGX15046.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_H.1.8]
gi|378080476|gb|EHW42438.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9A]
gi|378088482|gb|EHW50335.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9C]
gi|378093646|gb|EHW55450.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9D]
gi|378099976|gb|EHW61673.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9E]
gi|378132177|gb|EHW93529.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10E]
gi|378135208|gb|EHW96520.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11A]
gi|378138246|gb|EHW99504.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10F]
gi|378145181|gb|EHX06347.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11B]
gi|378151862|gb|EHX12964.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11D]
gi|378155043|gb|EHX16103.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11C]
gi|378160136|gb|EHX21133.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11E]
gi|378173088|gb|EHX33932.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12B]
gi|378173799|gb|EHX34632.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12A]
gi|378175241|gb|EHX36059.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12C]
gi|378189533|gb|EHX50125.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12D]
gi|378193147|gb|EHX53688.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12E]
gi|378224523|gb|EHX84725.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14B]
gi|378232924|gb|EHX93018.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14C]
gi|378236537|gb|EHX96583.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14D]
gi|384472327|gb|EIE56385.1| ATP-dependent RNA helicase RhlE [Escherichia coli AI27]
gi|385707439|gb|EIG44470.1| ATP-dependent RNA helicase rhlE [Escherichia coli B799]
gi|386164378|gb|EIH26164.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2264]
gi|386174020|gb|EIH46021.1| ATP-dependent RNA helicase RhlE [Escherichia coli 99.0741]
gi|386175879|gb|EIH53361.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2608]
gi|386185388|gb|EIH68114.1| ATP-dependent RNA helicase RhlE [Escherichia coli 93.0624]
gi|386198868|gb|EIH97859.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.154]
gi|386211626|gb|EII22082.1| ATP-dependent RNA helicase RhlE [Escherichia coli 9.0111]
gi|386214999|gb|EII31496.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0967]
gi|386229913|gb|EII57268.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.3884]
gi|388338976|gb|EIL05370.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H2 str.
CVM9450]
gi|388405146|gb|EIL65583.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-1]
gi|388412943|gb|EIL72969.1| ATP-dependent RNA helicase RhlE [Escherichia coli CUMT8]
gi|391314587|gb|EIQ72137.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli EPEC C342-62]
gi|397786486|gb|EJK97322.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_O31]
gi|408343465|gb|EKJ57866.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1288]
gi|430900533|gb|ELC22551.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE12]
gi|431009653|gb|ELD24267.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE210]
gi|431356103|gb|ELG42794.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE101]
gi|431379611|gb|ELG64540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE135]
gi|431386759|gb|ELG70712.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE136]
gi|431472866|gb|ELH52700.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE203]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|300957744|ref|ZP_07169931.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
175-1]
gi|300315560|gb|EFJ65344.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
Length = 439
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|417595796|ref|ZP_12246456.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3030-1]
gi|345358931|gb|EGW91111.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3030-1]
Length = 454
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|148244296|ref|YP_001218990.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
okutanii HA]
gi|146326123|dbj|BAF61266.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
okutanii HA]
Length = 422
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F GL +LK + ++GY P+PIQ ++IP +L G+DV+A A+TG+GKTACF +P+LE
Sbjct: 2 SFSKLGLSDSILKAIEQKGYSEPSPIQNQSIPAILNGKDVMAAAQTGTGKTACFALPILE 61
Query: 98 KL--KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L K ++ VR LIL+PTRELA+Q V GK+ L+S+ + GG ++ Q RL
Sbjct: 62 ILSKKKPTKSNQVRTLILTPTRELAIQVSDSVTTYGKYLPLKSSVVFGGVKINPQMQRLC 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ DI+VATPGR L + + +K ++
Sbjct: 122 SGVDILVATPGRLLDLYSQNSVKFDMLE 149
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + +IP +L G+DV+A A+TG+GKTACF
Sbjct: 27 IQNQSIPAILNGKDVMAAAQTGTGKTACF 55
>gi|408793651|ref|ZP_11205257.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408462155|gb|EKJ85884.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 528
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 97/145 (66%), Gaps = 3/145 (2%)
Query: 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLI 93
++G FQSFGL E+L+G+ + G++ P+PIQ++ IPLVLEG+D++A A+TG+GKTA + +
Sbjct: 7 EVGNDFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGL 66
Query: 94 PMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
P L ++ G++ L+L+PTRELALQ + +LGK +++T + GG S Q +
Sbjct: 67 PCLNRINVE---EGMQVLVLTPTRELALQVSDELYKLGKHLGIKTTTIYGGSSYSKQITQ 123
Query: 154 LHASPDIVVATPGRFLHIVVEMELK 178
+ + VATPGR L ++ ELK
Sbjct: 124 VAKGAQVAVATPGRLLDLLKGKELK 148
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 160 IVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 219
++V TP R L + V EL +K K LG +++T + GG S Q ++
Sbjct: 80 VLVLTPTRELALQVSDEL--------YKLGKHLG----IKTTTIYGGSSYSKQITQVAKG 127
Query: 220 PDIVVATPGRFLHIVVEMELK 240
+ VATPGR L ++ ELK
Sbjct: 128 AQVAVATPGRLLDLLKGKELK 148
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
+ IPLVLEG+D++A A+TG+GKTA + R +
Sbjct: 36 IQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLNRIN 73
>gi|419344419|ref|ZP_13885801.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13A]
gi|419348857|ref|ZP_13890210.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13B]
gi|419353846|ref|ZP_13895128.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13C]
gi|419359241|ref|ZP_13900466.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13D]
gi|378188847|gb|EHX49441.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13A]
gi|378204519|gb|EHX64935.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13B]
gi|378206700|gb|EHX67102.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13D]
gi|378207818|gb|EHX68206.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13C]
Length = 445
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|419220091|ref|ZP_13763043.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8E]
gi|378071325|gb|EHW33395.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8E]
Length = 454
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|227326973|ref|ZP_03830997.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 193
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTP+QR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A VRALIL+PTRELA Q + VK K+ L+S + GG S++ Q
Sbjct: 63 LTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLSLRSLVVFGGVSINPQMM 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + + + LS ++
Sbjct: 123 KLRGGVDILVATPGRLLDLEHQRAVDLSQVE 153
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
V IP+VLEGRD++A A+TG+GKTA F
Sbjct: 27 VQRQAIPVVLEGRDLMASAQTGTGKTAGF 55
>gi|300947123|ref|ZP_07161337.1| DEAD/DEAH box helicase, partial [Escherichia coli MS 116-1]
gi|300453201|gb|EFK16821.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
Length = 433
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|418254156|ref|ZP_12879053.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 6603-63]
gi|420370803|ref|ZP_14871309.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|391319894|gb|EIQ76836.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|397900513|gb|EJL16872.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 6603-63]
Length = 406
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638]
gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
Length = 462
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 101/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+L+ V ++GY PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDTLGLNPEILRAVAEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V+E ++ ++S + GG S++ Q +L
Sbjct: 63 LVQNEPHAKGRRPVRALILTPTRELAAQIGENVREYSRYLDIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ D++VATPGR L + + +KL ++
Sbjct: 123 RSGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ Y++ T IP VLEGRD++A A+TG+GKTA F R
Sbjct: 17 AEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQRL 63
>gi|419957755|ref|ZP_14473821.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
cloacae GS1]
gi|388607913|gb|EIM37117.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
cloacae GS1]
Length = 460
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE- 97
F S GL E+L+ + ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+LE
Sbjct: 3 FDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62
Query: 98 --KLKTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
K + HA VRALIL+PTRELA Q + V+E ++ ++S + GG S++ Q +L
Sbjct: 63 LVKNQPHAKGRRPVRALILTPTRELAAQIGENVREYSRYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL +I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDNIE 151
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
Length = 527
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 29 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 88
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 89 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 148
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L ++++ATPGR L V + L +Q
Sbjct: 149 MNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQ 185
>gi|417700880|ref|ZP_12350014.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
gi|333007150|gb|EGK26642.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
Length = 406
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|260866964|ref|YP_003233366.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
gi|415824802|ref|ZP_11513036.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1180]
gi|417193204|ref|ZP_12015051.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0522]
gi|417209507|ref|ZP_12020791.1| ATP-dependent RNA helicase RhlE [Escherichia coli JB1-95]
gi|417590515|ref|ZP_12241230.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2534-86]
gi|419195910|ref|ZP_13739314.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC8A]
gi|419202149|ref|ZP_13745371.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8B]
gi|419887299|ref|ZP_14407895.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9570]
gi|419894549|ref|ZP_14414445.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9574]
gi|420088816|ref|ZP_14600676.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9602]
gi|420094200|ref|ZP_14605802.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9634]
gi|424769471|ref|ZP_18196698.1| RNA helicase RhlE [Escherichia coli O111:H8 str. CFSAN001632]
gi|257763320|dbj|BAI34815.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
gi|323175585|gb|EFZ61180.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1180]
gi|345344461|gb|EGW76828.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2534-86]
gi|378051718|gb|EHW14033.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC8A]
gi|378055793|gb|EHW18054.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8B]
gi|386190385|gb|EIH79133.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0522]
gi|386196132|gb|EIH90358.1| ATP-dependent RNA helicase RhlE [Escherichia coli JB1-95]
gi|388363164|gb|EIL27104.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9570]
gi|388363386|gb|EIL27315.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9574]
gi|394389606|gb|EJE66748.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9602]
gi|394396885|gb|EJE73216.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9634]
gi|421944120|gb|EKU01382.1| RNA helicase RhlE [Escherichia coli O111:H8 str. CFSAN001632]
Length = 454
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|444363801|ref|ZP_21164182.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444368994|ref|ZP_21168777.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|443594238|gb|ELT62906.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|443599860|gb|ELT68103.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 494
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|421868011|ref|ZP_16299663.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
gi|358071942|emb|CCE50541.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
Length = 494
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K + F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F
Sbjct: 7 KPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFS 66
Query: 93 IPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146
+P++++L A TS VRALIL+PTRELA Q V K T L+S + GG
Sbjct: 67 LPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVD 126
Query: 147 MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
M+ Q A L +I++ATPGR L V + L +Q
Sbjct: 127 MNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 434
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 99/150 (66%), Gaps = 4/150 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F+S GL ++L+ V ++GY PTPIQ++ IP+VL G+D++A A+TG+GKTA F +PML+
Sbjct: 8 NFKSLGLSADILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQ 67
Query: 98 KLKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
+L VRALIL+PTRELA Q + V++ K+ +L+S + GG S++ Q +
Sbjct: 68 RLNDSPIQMKGRRPVRALILTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINPQMMK 127
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L DI+VATPGR L + + + LS ++
Sbjct: 128 LRGGVDILVATPGRLLDLEHQNAVDLSRVE 157
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ +L+S + GG S++ Q +L DI+VATPGR L + + + LS +++ +
Sbjct: 101 VRDYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSRVEILV 160
Query: 249 TDFKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYV 288
D + R+ LD+ IH R+ + K P ++ +
Sbjct: 161 LD---EADRM-LDM-----GFIHDIRRVLNKLPPKRQNLL 191
>gi|352100041|ref|ZP_08957968.1| ATP-dependent RNA helicase RhlE [Halomonas sp. HAL1]
gi|350601389|gb|EHA17435.1| ATP-dependent RNA helicase RhlE [Halomonas sp. HAL1]
Length = 420
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL ++L+ V +GY +PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +PML++
Sbjct: 3 FSELGLHADLLRAVTAQGYTVPTPIQREAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQR 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T VRAL+L+PTRELA Q + V G+ L+S + GG Q L A
Sbjct: 63 LNTGKQPGKRQVRALVLTPTRELAAQVGESVSTYGQHLALRSHIIFGGVGQQPQIDALKA 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + + LSS++
Sbjct: 123 GLDVLVATPGRLLDLHQQGHVDLSSVE 149
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+ + IP+VLEGRD++A A+TG+GKTA F R + G
Sbjct: 27 IQREAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQRLNTG 66
>gi|24112165|ref|NP_706675.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 301]
gi|30062282|ref|NP_836453.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 2457T]
gi|110804797|ref|YP_688317.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5 str. 8401]
gi|384542336|ref|YP_005726398.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
gi|415854782|ref|ZP_11530368.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
2457T]
gi|417706409|ref|ZP_12355465.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
gi|417721811|ref|ZP_12370653.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
gi|417727186|ref|ZP_12375928.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
gi|417732356|ref|ZP_12381025.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
2747-71]
gi|417737649|ref|ZP_12386250.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
4343-70]
gi|417742288|ref|ZP_12390838.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 2930-71]
gi|420330111|ref|ZP_14831808.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-1770]
gi|420340408|ref|ZP_14841932.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-404]
gi|424837260|ref|ZP_18261897.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5a str. M90T]
gi|24051003|gb|AAN42382.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
gi|30040527|gb|AAP16259.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
2457T]
gi|110614345|gb|ABF03012.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
gi|281600121|gb|ADA73105.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
gi|313650305|gb|EFS14717.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
2457T]
gi|332759696|gb|EGJ89999.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
4343-70]
gi|332760467|gb|EGJ90756.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
2747-71]
gi|332763287|gb|EGJ93529.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
gi|332767959|gb|EGJ98145.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 2930-71]
gi|333006587|gb|EGK26086.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
gi|333021182|gb|EGK40438.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
gi|383466312|gb|EID61333.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5a str. M90T]
gi|391258157|gb|EIQ17263.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-1770]
gi|391272965|gb|EIQ31794.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-404]
Length = 406
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|430814141|emb|CCJ28577.1| unnamed protein product [Pneumocystis jirovecii]
Length = 806
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
T+ +S+ D T D K G F+ F L E+L G+ + G++ P+PIQ ++IP+ L GR
Sbjct: 24 TLNLSTKDTRPQTEDVTKTKGNEFEDFYLKRELLMGIFEAGFERPSPIQEESIPIALTGR 83
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
D++A A+ G+GKTA F+IP LEKL + + +ALIL PTRELALQT K LGK
Sbjct: 84 DILARAKNGTGKTAAFIIPALEKLNSKKPKT--QALILVPTRELALQTSHVCKTLGKHMG 141
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
+ GG S+ RLH ++V TPGR L
Sbjct: 142 INVMVTTGGTSLQQDIIRLHDPVHVIVGTPGRIL 175
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFL 319
+ +++IP+ L GRD++A A+ G+GKTA F+
Sbjct: 71 IQEESIPIALTGRDILARAKNGTGKTAAFI 100
>gi|345298444|ref|YP_004827802.1| DEAD/DEAH box helicase [Enterobacter asburiae LF7a]
gi|345092381|gb|AEN64017.1| DEAD/DEAH box helicase domain protein [Enterobacter asburiae LF7a]
Length = 459
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE- 97
F S GL E+L+ + ++GY PTPIQ + IP VL+GRD++A A+TG+GKTA F +P+LE
Sbjct: 3 FDSLGLNPEILRAIAEQGYVEPTPIQTQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62
Query: 98 --KLKTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
K + HA VRALIL+PTRELA Q + V+E ++ ++S + GG S++ Q +L
Sbjct: 63 LVKNQPHAKGRRPVRALILTPTRELAAQIGENVREYSRYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL SI+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDSIE 151
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQTQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 506
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 91/149 (61%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ + +LK + K YK PTPIQ + IP VL GRD++ A+TG+GKTA F +PM++
Sbjct: 19 FQDLNISPVILKALAKENYKEPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQL 78
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L G +RAL+LSPTRELALQ VK +FTKL+ST ++GG S Q L
Sbjct: 79 LNEQPPKPGMARRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERAL 138
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI++ATPGR L ++ + + L ++
Sbjct: 139 QQGADILIATPGRLLDLMNQKRIDLQHVE 167
>gi|374367571|ref|ZP_09625632.1| helicase [Cupriavidus basilensis OR16]
gi|373100874|gb|EHP41934.1| helicase [Cupriavidus basilensis OR16]
Length = 496
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 29/224 (12%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F SFGL + + + ++GY PTPIQ + IP+VL+G+DV+ A+TG+GKTA F +P++++
Sbjct: 15 FDSFGLDARIQRALSEQGYTKPTPIQEQAIPVVLQGKDVMGAAQTGTGKTAGFALPIIQR 74
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+ S VRAL+L+PTRELA Q + V +FT L+ST + GG M+ Q
Sbjct: 75 LLPLASASASPARHPVRALMLTPTRELADQVYDNVARYARFTDLRSTVVFGGVDMNPQTE 134
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQY----------TFKFVKELGKFTKL---Q 199
L +I+VATPGR L V + + LS +Q F+ +L + L Q
Sbjct: 135 ALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQ 194
Query: 200 STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSS 243
LL + ++ RL AS +LH V +E+ S+
Sbjct: 195 RQTLLFSATFSSEIKRLAAS----------YLHQPVTIEVARSN 228
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 286 KYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
K + + IP+VL+G+DV+ A+TG+GKTA F R
Sbjct: 35 KPTPIQEQAIPVVLQGKDVMGAAQTGTGKTAGFALPIIQRL 75
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 91/151 (60%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK + +GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A TS VRALIL+PTRELA Q V K T L+S + GG M+ Q A
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQMA 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L V + L +Q
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 286 KYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
K + IP+VL GRDV+ A+TG+GKTA F R
Sbjct: 33 KPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRL 73
>gi|440288419|ref|YP_007341184.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
gi|440047941|gb|AGB78999.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
Length = 463
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ +++ GY+ PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPEILRAIVELGYREPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V+E ++ ++S + GG S++ Q +L
Sbjct: 63 LITTQPHAKGRRPVRALILTPTRELAAQIGENVREYSQYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDGIE 151
>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 507
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+L+ VL GY PTPIQ + IPLV+ G+D++ A+TG+GKTA F +P+L++
Sbjct: 25 FADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPILQR 84
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
+ A++S VRALIL+PTRELA+Q F+ VK K T +++ C GG + Q A
Sbjct: 85 ILPFASSSPSPAKHPVRALILAPTRELAMQVFESVKTYSKHTPIRAMCAYGGVDIRPQIA 144
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I+VATPGR L V + +S+Q
Sbjct: 145 ELKKGVEILVATPGRLLDHVENKSVSFNSVQ 175
>gi|386750015|ref|YP_006223222.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 00-7128]
gi|384556258|gb|AFI04592.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 00-7128]
Length = 513
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 93/146 (63%), Gaps = 7/146 (4%)
Query: 24 DNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMART 83
D+ N +KK F GL +VLK + + G+ P+PIQ K IP VL+GRDVVA A+T
Sbjct: 29 DDDNDNNKK----PSFNDLGLKAQVLKSIQEAGFTSPSPIQEKAIPAVLQGRDVVAQAQT 84
Query: 84 GSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLG 143
G+GKTA F +P++ LK + + ALI++PTRELA+Q + +LGK T+ ++ C+ G
Sbjct: 85 GTGKTAAFALPIINNLKNNHT---IEALIITPTRELAMQISDEIFKLGKHTRTKTVCVYG 141
Query: 144 GDSMDNQFARLHASPDIVVATPGRFL 169
G S+ Q + +P +++ATPGR L
Sbjct: 142 GQSIKRQCEFIEKNPQVMIATPGRLL 167
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP VL+GRDVVA A+TG+GKTA F
Sbjct: 64 IQEKAIPAVLQGRDVVAQAQTGTGKTAAF 92
>gi|215485885|ref|YP_002328316.1| ATP-dependent RNA helicase RhlE [Escherichia coli O127:H6 str.
E2348/69]
gi|312969182|ref|ZP_07783389.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
gi|417754655|ref|ZP_12402746.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2B]
gi|418995949|ref|ZP_13543556.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1A]
gi|419001015|ref|ZP_13548567.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1B]
gi|419006513|ref|ZP_13553966.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1C]
gi|419012350|ref|ZP_13559714.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC1D]
gi|419017347|ref|ZP_13564666.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1E]
gi|419022935|ref|ZP_13570176.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC2A]
gi|419027809|ref|ZP_13575002.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2C]
gi|419033704|ref|ZP_13580800.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2D]
gi|419038617|ref|ZP_13585671.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2E]
gi|215263957|emb|CAS08297.1| RNA helicase [Escherichia coli O127:H6 str. E2348/69]
gi|312286584|gb|EFR14497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
gi|377847939|gb|EHU12936.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1A]
gi|377849589|gb|EHU14558.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1C]
gi|377852750|gb|EHU17664.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1B]
gi|377861973|gb|EHU26787.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC1D]
gi|377865803|gb|EHU30593.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1E]
gi|377867945|gb|EHU32694.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC2A]
gi|377878098|gb|EHU42686.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2B]
gi|377882881|gb|EHU47412.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2D]
gi|377884294|gb|EHU48807.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2C]
gi|377897502|gb|EHU61881.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2E]
Length = 453
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQY 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF----LFYFFFR 325
+ IP VLEGRD++A A+TG+GKTA F L Y R
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQYLITR 66
>gi|253744188|gb|EET00428.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
Length = 900
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 106/169 (62%), Gaps = 11/169 (6%)
Query: 27 NTGDKKKKMGGG-----FQSFG-LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAM 80
NTG+ K+ F+ G L VLK + GY TPIQ+ IP++++G D +
Sbjct: 18 NTGEVSKERSSKRPLSQFEKLGKLSPPVLKAIHSLGYPTLTPIQKAAIPVIIDGGDACIV 77
Query: 81 ARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT--KLQS 138
++TGSGKTA + IP++ L H AT+G+R L+++PTREL +Q +++L +FT +L+
Sbjct: 78 SKTGSGKTAAYSIPLVNLLACHRATTGIRGLVIAPTRELCVQIGGVIRKLSRFTDPELRV 137
Query: 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHI---VVEMELKLSSIQY 184
L+GG++++ QF L A+PDI+V TPGR LHI + + +L S++Y
Sbjct: 138 CLLVGGEALERQFTALTANPDIIVCTPGRILHIHDQISTFKSQLKSVEY 186
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%), Gaps = 2/47 (4%)
Query: 189 VKELGKFT--KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 233
+++L +FT +L+ L+GG++++ QF L A+PDI+V TPGR LHI
Sbjct: 124 IRKLSRFTDPELRVCLLVGGEALERQFTALTANPDIIVCTPGRILHI 170
>gi|146418894|ref|XP_001485412.1| hypothetical protein PGUG_03141 [Meyerozyma guilliermondii ATCC
6260]
gi|152013508|sp|A5DIP0.1|DHH1_PICGU RecName: Full=ATP-dependent RNA helicase DHH1
gi|146390885|gb|EDK39043.1| hypothetical protein PGUG_03141 [Meyerozyma guilliermondii ATCC
6260]
Length = 547
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
+ I + D T D K G F+ FGL E+L G+ + G++ P+PIQ ++IP+ L GR
Sbjct: 8 NLNIPAKDSRPQTEDVTKTQGKSFEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGR 67
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
D++A A+ G+GKTA F+IP L+++KT + ++ LIL PTRELALQT + VK LGK K
Sbjct: 68 DILARAKNGTGKTASFIIPALQQVKT--KLNKIQVLILVPTRELALQTSQVVKTLGKHLK 125
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 173
LQ GG + + RL I+V TPGR L +
Sbjct: 126 LQCMVTTGGTLLRDDVMRLDEPVHILVGTPGRVLDLAA 163
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFL 319
+ +++IP+ L GRD++A A+ G+GKTA F+
Sbjct: 55 IQEESIPMALAGRDILARAKNGTGKTASFI 84
>gi|328865226|gb|EGG13612.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 414
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
T+ + D+ T D G F L ++L+G+ ++GY P+PIQ K IP+ L G+
Sbjct: 19 TLILPPKDERKQTEDVTATEGNEFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGK 78
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
D++A A+ G+GKTA FLIP LE KT ++ LIL PTRELALQT + KELGK+
Sbjct: 79 DIMARAKNGTGKTASFLIPALE--KTDPTKDYIQVLILVPTRELALQTSQVCKELGKYMN 136
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSS 181
++ GG S+ + RL+ + I+VATPGR L + + LS+
Sbjct: 137 VKVMATTGGTSLKDDIMRLYETVHILVATPGRVLDLAQKNVANLSN 182
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 264 GDSTEMIHKQRQSVRKWDPAKKKYVQ---VTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
G+ + +H +R +R +K YV+ + + IP+ L G+D++A A+ G+GKTA FL
Sbjct: 39 GNEFDDLHLKRDLLRGI--FEKGYVKPSPIQEKAIPIALAGKDIMARAKNGTGKTASFLI 96
>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
Length = 438
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 93/147 (63%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL +L+ + K+GY P+PIQ K IPLVLE +DV+A A+TG+GKTA F +PML+
Sbjct: 3 FKSLGLSDALLRAISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPMLQL 62
Query: 99 LKTHAA--TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L +RALIL+PTRELA Q + VKE F ++ST + GG + Q A L
Sbjct: 63 LSQQPPLRKRPIRALILTPTRELAAQVYANVKEYSTFLDIRSTVIFGGVNARPQIATLRN 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + L L+ ++
Sbjct: 123 GVDILVATPGRLLDLHSQKALSLAKVE 149
>gi|449308931|ref|YP_007441287.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
gi|449098964|gb|AGE86998.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
Length = 444
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ + ++GY PTPIQR+ IP+VL G+D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + VRALIL+PTRELA Q + V+E K+ ++S + GG S++ Q +L
Sbjct: 63 LTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDQVE 151
>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
BAA-894]
gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
Length = 474
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ + ++GY PTPIQR+ IP+VL G+D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + VRALIL+PTRELA Q + V+E K+ ++S + GG S++ Q +L
Sbjct: 63 LTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDQVE 151
>gi|429122441|ref|ZP_19183020.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
gi|426323043|emb|CCK13757.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
Length = 467
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ + ++GY PTPIQR+ IP+VL G+D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + VRALIL+PTRELA Q + V+E K+ ++S + GG S++ Q +L
Sbjct: 63 LTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDQVE 151
>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
Length = 506
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ + +LK + K YK PTPIQ + IP VL GRD++ A+TG+GKTA F +PM++
Sbjct: 3 FENLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQL 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L G +RAL+LSPTRELALQ VK +FTKL+ST ++GG S Q L
Sbjct: 63 LNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERAL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI++ATPGR L ++ + + L ++
Sbjct: 123 QQGADILIATPGRLLDLMNQKHVDLQHVE 151
>gi|389841642|ref|YP_006343726.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
gi|387852118|gb|AFK00216.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
Length = 474
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ + ++GY PTPIQR+ IP+VL G+D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 LKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + VRALIL+PTRELA Q + V+E K+ ++S + GG S++ Q +L
Sbjct: 63 LTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDQVE 151
>gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 432
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 97/149 (65%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+SF E+L+ + + GY+ TPIQ++ IP V G+DV+A A+TG+GKTA F +P+L+K
Sbjct: 3 FESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+ + +T+G RALIL+PTRELA Q + + K+ ++ +LGG MD+Q +L
Sbjct: 63 MLDNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDMKVVTVLGGVKMDSQATKLK 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR L +V L LS++ +
Sbjct: 123 RGADIIIATPGRLLEHIVACNLSLSNVDF 151
>gi|116748890|ref|YP_845577.1| DEAD/DEAH box helicase [Syntrophobacter fumaroxidans MPOB]
gi|116697954|gb|ABK17142.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
MPOB]
Length = 471
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 98/148 (66%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ + + YK PTPIQ++ +P++L+G+DV+A A+TG+GKTA F +P+L+
Sbjct: 3 FHSLGLSAELLRAIADQHYKHPTPIQQQAVPVILDGKDVLAGAQTGTGKTAGFALPLLQL 62
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L T G VRALIL+PTRELA Q + V GK+ L++ + GG +++ Q A+L
Sbjct: 63 LSKRPRTKGKTSVRALILTPTRELAAQVEESVASYGKYLPLKAAVVHGGVNINPQIAKLR 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L V + L L +++
Sbjct: 123 RGIDILVATPGRLLDHVQQRTLDLCAVE 150
>gi|66802312|ref|XP_629938.1| hypothetical protein DDB_G0291804 [Dictyostelium discoideum AX4]
gi|74896805|sp|Q54E49.1|DDX6_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx6; AltName:
Full=DEAD box protein 6
gi|60463332|gb|EAL61523.1| hypothetical protein DDB_G0291804 [Dictyostelium discoideum AX4]
Length = 423
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 2/159 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D+ T D G F L ++L+G+ ++GY P+PIQ K IP+ L GRD++A A+
Sbjct: 35 DERRQTEDVTATEGNDFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAK 94
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA FLIP LE KT ++ LIL PTRELALQT + KELGK+ +Q
Sbjct: 95 NGTGKTASFLIPALE--KTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMAST 152
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSS 181
GG S+ + RL+ I+VATPGR L + + LS+
Sbjct: 153 GGTSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSN 191
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 264 GDSTEMIHKQRQSVRKWDPAKKKYVQ---VTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
G+ + +H +R +R +K YV+ + + IP+ L GRD++A A+ G+GKTA FL
Sbjct: 48 GNDFDDLHLKRDLLRGI--FEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLI 105
>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 466
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL +LK V +GY+ P+PIQ + IP V+ GRDV+A A+TG+GKTA F +P+L++
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + +++ VRALIL+PTRELA Q + ++ GK+ L S + GG ++ Q ARL
Sbjct: 68 LSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARL 127
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +K S ++
Sbjct: 128 RQGVDVLVATPGRLLDLYNQRAVKFSQLE 156
>gi|218704175|ref|YP_002411694.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMN026]
gi|293404097|ref|ZP_06648091.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
gi|298379878|ref|ZP_06989483.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
gi|300898284|ref|ZP_07116635.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
gi|331662152|ref|ZP_08363075.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
gi|417585601|ref|ZP_12236377.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_C165-02]
gi|422332390|ref|ZP_16413404.1| ATP-dependent RNA helicase rhlE [Escherichia coli 4_1_47FAA]
gi|432352753|ref|ZP_19596037.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE2]
gi|432400987|ref|ZP_19643741.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE26]
gi|432425043|ref|ZP_19667558.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE181]
gi|432459813|ref|ZP_19701970.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE204]
gi|432474903|ref|ZP_19716911.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE208]
gi|432488391|ref|ZP_19730277.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE213]
gi|432521485|ref|ZP_19758641.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE228]
gi|432536852|ref|ZP_19773769.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE235]
gi|432630413|ref|ZP_19866357.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE80]
gi|432640011|ref|ZP_19875851.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE83]
gi|432665080|ref|ZP_19900666.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE116]
gi|432773985|ref|ZP_20008271.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE54]
gi|432838408|ref|ZP_20071897.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE140]
gi|432885207|ref|ZP_20099802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE158]
gi|432911150|ref|ZP_20117631.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE190]
gi|433017767|ref|ZP_20206028.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE105]
gi|433052168|ref|ZP_20239394.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE122]
gi|433067044|ref|ZP_20253870.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE128]
gi|433157777|ref|ZP_20342642.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE177]
gi|433177329|ref|ZP_20361779.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE82]
gi|433202290|ref|ZP_20386089.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE95]
gi|218431272|emb|CAR12150.1| RNA helicase [Escherichia coli UMN026]
gi|291428683|gb|EFF01708.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
gi|298279576|gb|EFI21084.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
gi|300358073|gb|EFJ73943.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
gi|331060574|gb|EGI32538.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
gi|345340250|gb|EGW72669.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_C165-02]
gi|373246701|gb|EHP66153.1| ATP-dependent RNA helicase rhlE [Escherichia coli 4_1_47FAA]
gi|430877681|gb|ELC01115.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE2]
gi|430927585|gb|ELC48148.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE26]
gi|430958277|gb|ELC76871.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE181]
gi|430991096|gb|ELD07512.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE204]
gi|431008411|gb|ELD23212.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE208]
gi|431023274|gb|ELD36471.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE213]
gi|431044549|gb|ELD54821.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE228]
gi|431072429|gb|ELD80180.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE235]
gi|431173448|gb|ELE73524.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE80]
gi|431184527|gb|ELE84284.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE83]
gi|431203485|gb|ELF02142.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE116]
gi|431319983|gb|ELG07635.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE54]
gi|431390874|gb|ELG74522.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE140]
gi|431419190|gb|ELH01548.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE158]
gi|431443866|gb|ELH24891.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE190]
gi|431536139|gb|ELI12470.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE105]
gi|431574944|gb|ELI47701.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE122]
gi|431589985|gb|ELI61099.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE128]
gi|431681153|gb|ELJ46959.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE177]
gi|431709238|gb|ELJ73708.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE82]
gi|431725326|gb|ELJ89181.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE95]
Length = 454
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP V+EGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP V+EGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++L+ + +GY PTPIQ + IP+VL+GRDV+ A+TG+GKTA F +P+++
Sbjct: 30 FADFGLSPDILRALNDQGYVHPTPIQAEAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 89
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA TS VRALIL+PTRELA Q + VK + T L+ST + GG + Q A
Sbjct: 90 LLAHANTSASPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGVDIAPQTA 149
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L + +IV+ATPGR L V + L LS Q
Sbjct: 150 ALRSGIEIVIATPGRLLDHVQQKTLNLSQTQ 180
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP+VL+GRDV+ A+TG+GKTA F
Sbjct: 54 IQAEAIPVVLQGRDVMGAAQTGTGKTAGF 82
>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase [Cellulophaga lytica DSM 7489]
gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
7489]
Length = 429
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL +LK + K+GY P+PIQ K IP VLEG+DV+A A+TG+GKTA F +P+L
Sbjct: 3 FKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLLHL 62
Query: 99 LKTHAATSG--VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A VRALIL+PTRELA Q F VKE +F L+S + GG + Q A L
Sbjct: 63 LSEQKALRHRPVRALILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQIANLKR 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + L L ++
Sbjct: 123 GMDVLVATPGRLLDLHNQRFLSLDKVE 149
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP VLEG+DV+A A+TG+GKTA F
Sbjct: 27 IQEKAIPPVLEGKDVLASAQTGTGKTAGF 55
>gi|422835705|ref|ZP_16883758.1| ATP-dependent RNA helicase rhlE [Escherichia coli E101]
gi|371611884|gb|EHO00403.1| ATP-dependent RNA helicase rhlE [Escherichia coli E101]
Length = 454
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP V+EGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP V+EGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|389583394|dbj|GAB66129.1| ATP-dependent RNA helicase [Plasmodium cynomolgi strain B]
Length = 433
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D K G F+ + L E+L G+ ++GY+ P+PIQ ++IP+ L G++++A A+
Sbjct: 46 DHRYRTEDVTKTKGNEFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAK 105
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA F IP+LEK TH + ++ LIL PTRELALQT +KELGK K+Q
Sbjct: 106 NGTGKTAAFAIPLLEKCNTHK--NFIQGLILVPTRELALQTSAMIKELGKHMKIQCMVTT 163
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFL 169
GG S+ RL+ I+ TPGR L
Sbjct: 164 GGTSLREDIMRLYNVVHILCGTPGRIL 190
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T +KELGK K+Q GG S+ RL+ I+ TPGR L + + LS
Sbjct: 144 TSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYNVVHILCGTPGRILDLANKDVANLSGC 203
Query: 245 QLSLTD 250
+ + D
Sbjct: 204 HIMVMD 209
>gi|156096943|ref|XP_001614505.1| ATP-dependent RNA helicase [Plasmodium vivax Sal-1]
gi|148803379|gb|EDL44778.1| ATP-dependent RNA helicase, putative [Plasmodium vivax]
Length = 433
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D K G F+ + L E+L G+ ++GY+ P+PIQ ++IP+ L G++++A A+
Sbjct: 46 DHRYRTEDVTKTKGNEFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAK 105
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA F IP+LEK TH + ++ LIL PTRELALQT +KELGK K+Q
Sbjct: 106 NGTGKTAAFAIPLLEKCNTHK--NFIQGLILVPTRELALQTSAMIKELGKHMKIQCMVTT 163
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFL 169
GG S+ RL+ I+ TPGR L
Sbjct: 164 GGTSLREDIMRLYNVVHILCGTPGRIL 190
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T +KELGK K+Q GG S+ RL+ I+ TPGR L + + LS
Sbjct: 144 TSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYNVVHILCGTPGRILDLANKDVANLSGC 203
Query: 245 QLSLTD 250
+ + D
Sbjct: 204 HIMVMD 209
>gi|221055405|ref|XP_002258841.1| ATP-dependent RNA helicase [Plasmodium knowlesi strain H]
gi|193808911|emb|CAQ39614.1| ATP-dependent RNA helicase, putative [Plasmodium knowlesi strain H]
Length = 433
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D K G F+ + L E+L G+ ++GY+ P+PIQ ++IP+ L G++++A A+
Sbjct: 46 DHRYRTEDVTKTKGNEFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAK 105
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA F IP+LEK TH + ++ LIL PTRELALQT +KELGK K+Q
Sbjct: 106 NGTGKTAAFAIPLLEKCNTHK--NFIQGLILVPTRELALQTSAMIKELGKHMKIQCMVTT 163
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFL 169
GG S+ RL+ I+ TPGR L
Sbjct: 164 GGTSLREDIMRLYNVVHILCGTPGRIL 190
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T +KELGK K+Q GG S+ RL+ I+ TPGR L + + LS
Sbjct: 144 TSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYNVVHILCGTPGRILDLANKDVANLSGC 203
Query: 245 QLSLTD 250
+ + D
Sbjct: 204 HIMVMD 209
>gi|323491944|ref|ZP_08097113.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
gi|323313802|gb|EGA66897.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
Length = 482
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK + +GY P+PIQ + IP VL G+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLGLSAPILKAIQDQGYDKPSPIQEQAIPAVLNGQDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLKTHAATSG--VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L G VRALIL+PTRELA Q + V + ++ +L ST + GG ++ Q +L
Sbjct: 62 RLDNGTRVKGNHVRALILTPTRELAAQVQENVFKYSRYQRLTSTVVFGGVKINPQMLKLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DIVVATPGR L + + +K ++
Sbjct: 122 KGSDIVVATPGRLLDLYQQNAIKFDQLE 149
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+ + IP VL G+DV+A A+TG+GKTA F R D G
Sbjct: 27 IQEQAIPAVLNGQDVMAAAQTGTGKTAGFTLPILERLDNG 66
>gi|293409172|ref|ZP_06652748.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469640|gb|EFF12124.1| conserved hypothetical protein [Escherichia coli B354]
Length = 454
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP V+EGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP V+EGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase [Sulfurimonas autotrophica DSM 16294]
gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
DSM 16294]
Length = 417
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK + ++GY PTPIQ+K IP++LE +D++A A+TG+GKTA F +P+LE
Sbjct: 7 FNSLGLSAPILKAIKEQGYNTPTPIQQKAIPVILEKKDILAGAQTGTGKTAGFTLPLLEL 66
Query: 99 LKTHAATS---GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L T +RALIL+PTRELA Q + V GK +ST + GG ++ Q + L
Sbjct: 67 LSREKPTKQKHKIRALILTPTRELAAQVGESVALYGKHLPFKSTVIFGGVKINPQISNLR 126
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DIV+ATPGR L + + + L ++Y
Sbjct: 127 KGTDIVIATPGRLLDHISQKTIDLREVEY 155
>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 492
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V +GY+ PTPIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 16 FTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEL 75
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A VRAL+L+PTRELA Q + V GK+ L+S + GG + Q ++L
Sbjct: 76 LSRGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGIGPQISKLGK 135
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + + ++
Sbjct: 136 GVDILVATPGRLLDLYNQGAVNFNQLE 162
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP VLEG+DV+A A+TG+GKTA F RGN
Sbjct: 44 AIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSRGN 80
>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 489
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK V + GY IPTPIQ + IP+VL GRD++ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q
Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I++ATPGR L V + L +Q
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|317970136|ref|ZP_07971526.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0205]
Length = 436
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 108/181 (59%), Gaps = 12/181 (6%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
D+++ F + GLG +++ VL++GY P+ IQ++ IP VL GRDV+A A+TG+GKTA
Sbjct: 6 DEEQLAESPFTALGLGRPIVEAVLQKGYSQPSSIQQQCIPAVLAGRDVMAAAQTGTGKTA 65
Query: 90 CFLIPMLEKLK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
F +PMLE+L+ HA VR+L+L+PTRELA Q VK + L+S + GG +
Sbjct: 66 GFTLPMLERLRHGPHARGRIVRSLVLTPTRELAAQVADNVKAYSRHLDLRSDVVFGGVKI 125
Query: 148 DNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ----------YTFKFVKELGKFTK 197
+ Q RL A D++VATPGR + +V + + L ++ F++++ K +
Sbjct: 126 NPQITRLQAGADMLVATPGRLMDLVQQGAISLDRVEILVLDEADRMLDMGFIRDIQKILR 185
Query: 198 L 198
L
Sbjct: 186 L 186
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
VK + L+S + GG ++ Q RL A D++VATPGR + +V + + L +++ +
Sbjct: 105 VKAYSRHLDLRSDVVFGGVKINPQITRLQAGADMLVATPGRLMDLVQQGAISLDRVEILV 164
Query: 249 TD 250
D
Sbjct: 165 LD 166
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 284 KKKYVQ---VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+K Y Q + IP VL GRDV+A A+TG+GKTA F R G
Sbjct: 30 QKGYSQPSSIQQQCIPAVLAGRDVMAAAQTGTGKTAGFTLPMLERLRHG 78
>gi|308160612|gb|EFO63089.1| ATP-dependent RNA helicase [Giardia lamblia P15]
Length = 625
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
+Q L ++ + VL+ G+K PTP+Q K IP+VL GRD + A TGSGKT F IP+LE
Sbjct: 2 SWQGLSLSRQLTRAVLRLGWKFPTPVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLLE 61
Query: 98 KLKTHAA-TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
++ T G ALILSPTRELA QT ++EL FT + L+GG Q A+L
Sbjct: 62 RMILRGRDTYGTTALILSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTARQAAQLRT 121
Query: 157 SPDIVVATPGRFLHIV 172
PDI+VATPGR + +V
Sbjct: 122 EPDIIVATPGRLIDLV 137
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 234
T ++EL FT + L+GG Q A+L PDI+VATPGR + +V
Sbjct: 88 TAAVLQELAYFTNFRVYLLIGGTDTARQAAQLRTEPDIIVATPGRLIDLV 137
>gi|84994752|ref|XP_952098.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
gi|65302259|emb|CAI74366.1| ATP-dependent RNA helicase, putative [Theileria annulata]
Length = 416
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 99/162 (61%), Gaps = 6/162 (3%)
Query: 14 DPTVTISSNDDNGN----TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIP 69
DPT D N + T D K G F+ + L E+L G+ ++G++ P+PIQ ++IP
Sbjct: 16 DPTWKRDILDKNADKRYKTEDVTKTRGSEFEDYFLKRELLMGIFEKGFERPSPIQEESIP 75
Query: 70 LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129
+ L G D++A A+ G+GKTA F+IP+L+KL T + ++ LIL PTRELALQT VKE
Sbjct: 76 VALAGHDILARAKNGTGKTAAFVIPLLQKLDT--SEPQIQGLILLPTRELALQTSAVVKE 133
Query: 130 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171
LGK+ ++Q GG S+ N RL+ I+ TPGR L +
Sbjct: 134 LGKYLEVQCMVSTGGTSLRNDIMRLYKPVHILCGTPGRILDL 175
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 174 EMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 233
E+ L+ S++ VKELGK+ ++Q GG S+ N RL+ I+ TPGR L +
Sbjct: 122 ELALQTSAV------VKELGKYLEVQCMVSTGGTSLRNDIMRLYKPVHILCGTPGRILDL 175
>gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase [Nitrosomonas eutropha C91]
gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
Length = 488
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 94/140 (67%), Gaps = 6/140 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L E+L+ V+ GY PTPIQ + IP +L G+DV+A A+TG+GKTA F +P+L
Sbjct: 7 FEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPLLHH 66
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L+ HA++S VRALI++PTRELA+Q + V++ GK+ L++T + GG +++ Q
Sbjct: 67 LQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIEPQIT 126
Query: 153 RLHASPDIVVATPGRFLHIV 172
L +I+VATPGR L +V
Sbjct: 127 ELRNGVEILVATPGRLLDLV 146
>gi|385203300|ref|ZP_10030170.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385183191|gb|EIF32465.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 491
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK V + GY IPTPIQ + IP+VL GRD++ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q
Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I++ATPGR L V + L +Q
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|359437542|ref|ZP_09227600.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20311]
gi|359445111|ref|ZP_09234864.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20439]
gi|358027712|dbj|GAA63849.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20311]
gi|358041038|dbj|GAA71113.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20439]
Length = 465
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL ++ VL++GY+ PTPIQ + IP ++ RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|91782534|ref|YP_557740.1| ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400]
gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
LB400]
Length = 491
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK V + GY IPTPIQ + IP+VL GRD++ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q
Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I++ATPGR L V + L +Q
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 494
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+ + V GY PTPIQR+ IP+V+ G DV+ A+TG+GKTA F +P+L +
Sbjct: 3 FADLGLIPELQRAVADAGYTEPTPIQRQAIPIVIAGNDVMGGAQTGTGKTAGFTLPLLHR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA TS RALIL+PTRELA+Q ++ VK K L++TC+ GG M+ Q
Sbjct: 63 LARHANTSTSPARHQTRALILAPTRELAMQVYESVKTYSKHLPLRATCIYGGVDMNPQIQ 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +IV+ATPGR L V + + L+ ++
Sbjct: 123 ELRRGIEIVIATPGRLLDHVQQKTINLTQVE 153
>gi|124505073|ref|XP_001351278.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
gi|4493972|emb|CAB39031.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
gi|117956282|gb|ABK58709.1| RNA helicase [Plasmodium falciparum]
gi|117956284|gb|ABK58710.1| RNA helicase [Plasmodium falciparum]
Length = 433
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 90/142 (63%), Gaps = 2/142 (1%)
Query: 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGK 87
T D K G F+ + L E+L G+ ++GY+ P+PIQ ++IP+ L G++++A A+ G+GK
Sbjct: 51 TEDVTKTKGNEFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGK 110
Query: 88 TACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
TA F IP+LEK TH + ++ LIL PTRELALQT +KELGK K+Q GG S+
Sbjct: 111 TAAFAIPLLEKCNTHK--NFIQGLILVPTRELALQTSAMIKELGKHMKVQCMVTTGGTSL 168
Query: 148 DNQFARLHASPDIVVATPGRFL 169
RL+ I+ TPGR L
Sbjct: 169 REDIMRLYNVVHILCGTPGRIL 190
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T +KELGK K+Q GG S+ RL+ I+ TPGR L + + LS
Sbjct: 144 TSAMIKELGKHMKVQCMVTTGGTSLREDIMRLYNVVHILCGTPGRILDLANKDVANLSGC 203
Query: 245 QLSLTD 250
+ + D
Sbjct: 204 HIMVMD 209
>gi|430814140|emb|CCJ28576.1| unnamed protein product [Pneumocystis jirovecii]
Length = 500
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
T+ +S+ D T D K G F+ F L E+L G+ + G++ P+PIQ ++IP+ L GR
Sbjct: 24 TLNLSTKDTRPQTEDVTKTKGNEFEDFYLKRELLMGIFEAGFERPSPIQEESIPIALTGR 83
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
D++A A+ G+GKTA F+IP LEKL + + +ALIL PTRELALQT K LGK
Sbjct: 84 DILARAKNGTGKTAAFIIPALEKLNSKKPKT--QALILVPTRELALQTSHVCKTLGKHMG 141
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
+ GG S+ RLH ++V TPGR L
Sbjct: 142 INVMVTTGGTSLQQDIIRLHDPVHVIVGTPGRIL 175
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+ +++IP+ L GRD++A A+ G+GKTA F+
Sbjct: 71 IQEESIPIALTGRDILARAKNGTGKTAAFII 101
>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 469
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 11/163 (6%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSG 86
TG KK F+ FGL ++LK + GY PTPIQ + IPLVLEG+DV+ A+TG+G
Sbjct: 10 QTGSDKK-----FEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTG 64
Query: 87 KTACFLIPMLEKLKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTC 140
KTA + +PML+ L A TS VRALIL PTRELA Q F+ VK K+T ++S
Sbjct: 65 KTAGYSLPMLQSLLFSANTSMSPARHPVRALILVPTRELADQVFEDVKRYAKYTPVKSAV 124
Query: 141 LLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ GG + +Q + L A +I++ATPGR L V + + LS Q
Sbjct: 125 VFGGVDISSQTSILRAGVEILIATPGRLLDHVQQKNVNLSHTQ 167
>gi|392556514|ref|ZP_10303651.1| ATP-dependent RNA helicase [Pseudoalteromonas undina NCIMB 2128]
Length = 465
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL ++ VL++GY+ PTPIQ + IP ++ RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S++
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSVE 149
>gi|345863070|ref|ZP_08815283.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345125953|gb|EGW55820.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 456
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 96/148 (64%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +L+ V ++GYK P+PIQ + IP V++GRDV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFASLGLSAPLLEAVAEQGYKTPSPIQAQAIPAVIKGRDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L A + VR+LIL+PTRELA+Q + V GK L+ST + GG ++ Q +L
Sbjct: 62 RLSKDGRAQANQVRSLILTPTRELAVQVGESVATYGKHLPLRSTVVYGGVKINPQMMKLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + +K ++
Sbjct: 122 RGVDVLVATPGRLLDLYNRNAVKFKQLE 149
>gi|427429668|ref|ZP_18919655.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
gi|425879905|gb|EKV28606.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
Length = 469
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 94/148 (63%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL +LK + + GY+ PTPIQ K IPL+L+GRDV+ +A+TG+GKTA F +PML++
Sbjct: 4 FTDLGLNESLLKALAEDGYETPTPIQAKAIPLLLDGRDVLGIAQTGTGKTAAFALPMLQR 63
Query: 99 L---KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L A G RALIL+PTRELA+Q +K G+ + ++ C+ GG M+ Q L
Sbjct: 64 LMDSNRRAGPKGCRALILTPTRELAVQINDSIKSYGRHLRHRTACIFGGVGMNPQIRALS 123
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR + ++ + ++ ++
Sbjct: 124 GGVDLLIATPGRLIDLMNQGYVRFDKVE 151
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IPL+L+GRDV+ +A+TG+GKTA F R
Sbjct: 32 AIPLLLDGRDVLGIAQTGTGKTAAFALPMLQRL 64
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
+K G+ + ++ C+ GG M+ Q L D+++ATPGR + ++ + ++ ++ +
Sbjct: 95 IKSYGRHLRHRTACIFGGVGMNPQIRALSGGVDLLIATPGRLIDLMNQGYVRFDKVEEFV 154
Query: 249 TD---------FKQDTSRIALDLVGDSTEMI 270
D F +D ++ L GD ++
Sbjct: 155 LDEADRMLDMGFVRDVRKVVDRLPGDRHTLL 185
>gi|315126209|ref|YP_004068212.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
gi|315014723|gb|ADT68061.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
Length = 465
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL ++ VL++GY+ PTPIQ + IP ++ RDV+A A+TG+GKTA F +P++E+
Sbjct: 3 FDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIER 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T A ++ VRALIL+PTRELALQ + V+E K + + S + GG ++ Q RL
Sbjct: 63 LSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K SI+
Sbjct: 123 GVDILVATPGRLIDLHNQNAVKFDSIE 149
>gi|242239842|ref|YP_002988023.1| DEAD/DEAH box helicase [Dickeya dadantii Ech703]
gi|242131899|gb|ACS86201.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
Length = 452
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 98/148 (66%), Gaps = 4/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++L+ V ++GY+ PTP+QR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + + VRALIL+PTRELA Q V K+ +L+S + GG S++ Q +L
Sbjct: 63 LNDNPPQAKGRRPVRALILTPTRELAAQIGDNVTAYSKYLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSI 182
DI++ATPGR L + + + LS +
Sbjct: 123 RGGVDILIATPGRLLDLEHQNAVDLSKV 150
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
V IP+VLEGRD++A A+TG+GKTA F
Sbjct: 27 VQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|46143210|ref|ZP_00135674.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 185
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|383784621|ref|YP_005469191.1| DEAD/DEAH box helicase [Leptospirillum ferrooxidans C2-3]
gi|383083534|dbj|BAM07061.1| putative DEAD/DEAH box helicase domain protein [Leptospirillum
ferrooxidans C2-3]
Length = 437
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+++ V +RGY PTPIQ IP VL GRD++A A+TG+GKTA F +P++E
Sbjct: 3 FSALGLSEEIVRAVTERGYLTPTPIQVAAIPAVLSGRDLMAGAQTGTGKTAGFTLPIIEI 62
Query: 99 L------KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L K V+ALIL+PTRELA Q + V E GK KL ST + GG S++ Q
Sbjct: 63 LSRKNDKKEKGRRVPVKALILTPTRELAAQVEESVVEYGKHMKLSSTVIFGGVSINPQIQ 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L V + L LS ++
Sbjct: 123 KLRTGVDILVATPGRLLDHVQQRTLDLSHVE 153
>gi|261341381|ref|ZP_05969239.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
35316]
gi|288316692|gb|EFC55630.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
35316]
Length = 457
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE- 97
F S GL E+L+ + ++GY PTPIQ+K IP VL+GRD++A A+TG+GKTA F +P+LE
Sbjct: 3 FDSLGLNPEILRSIAEQGYVEPTPIQQKAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62
Query: 98 --KLKTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
K + HA VRALIL+PTRELA Q + V++ ++ ++S + GG S++ Q +L
Sbjct: 63 LVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQKAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|332529812|ref|ZP_08405766.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC
19624]
gi|332040833|gb|EGI77205.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC
19624]
Length = 565
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L +LK V ++GY+ PT IQ + IPL+L+G D++ A+TG+GKTA F +P+L
Sbjct: 3 FEELKLAPAILKAVREQGYETPTAIQEQAIPLILQGNDLLGGAQTGTGKTAAFTLPLLHN 62
Query: 99 LKTHAAT------SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + +G+RAL+L+PTRELA Q + V+ GK+ +L+ST + GG M+ Q A
Sbjct: 63 LTMRRSAQNKWGGNGIRALVLTPTRELAAQVEESVRNYGKYLQLESTVIFGGVGMNPQIA 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ DI+VATPGR L + + + LS +Q
Sbjct: 123 RVKKGVDILVATPGRLLDLQQQGFMDLSQVQ 153
>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
Length = 464
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 89/135 (65%), Gaps = 2/135 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL +LK V +GY P+PIQ K IP+VLEGRDV+A A+TG+GKTA F +P+LE
Sbjct: 3 FTTLGLSDPILKAVTDKGYDTPSPIQAKAIPVVLEGRDVMAAAQTGTGKTAGFTLPLLEI 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A + VRAL+L+PTRELA Q + V+ GK KL+S + GG ++ Q +L
Sbjct: 63 LSKGQPARANQVRALVLTPTRELAAQVAESVETYGKHLKLRSAVVFGGVKINPQMMKLRG 122
Query: 157 SPDIVVATPGRFLHI 171
DI++ATPGR L +
Sbjct: 123 GVDILIATPGRLLDL 137
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP+VLEGRDV+A A+TG+GKTA F +G
Sbjct: 32 IPVVLEGRDVMAAAQTGTGKTAGFTLPLLEILSKGQ 67
>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
Length = 506
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 91/149 (61%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ + +LK + K YK PTPIQ + IP VL GRD++ A+TG+GKTA F +PM++
Sbjct: 3 FEDLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQL 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L G +RAL+LSPTRELALQ VK +FTKL+ST ++GG S Q L
Sbjct: 63 LNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERAL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI++ATPGR L ++ + + L ++
Sbjct: 123 QQGADILIATPGRLLDLMNQKHVDLQHVE 151
>gi|271500987|ref|YP_003334012.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
Ech586]
gi|270344542|gb|ACZ77307.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
Length = 452
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL ++L+ V ++GY+ PTP+Q + IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FQSLGLSADILRAVEEQGYREPTPVQSQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + VRALIL+PTRELA Q + V+ K+ +L+S + GG S++ Q +L
Sbjct: 63 LNESPVLAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI++ATPGR L + + + LS ++
Sbjct: 123 RGGVDILIATPGRLLDLEHQNAVDLSQVE 151
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
V IP+VLEGRD++A A+TG+GKTA F
Sbjct: 27 VQSQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|440229962|ref|YP_007343755.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
gi|440051667|gb|AGB81570.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
Length = 455
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+L+ V ++GY+ PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FETLGLNAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVLQL 62
Query: 99 LKTHAAT----SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + + VRALIL+PTRELA Q + V + +L+S + GG S++ Q +L
Sbjct: 63 LSSKPSPVKGRRPVRALILTPTRELAAQIGENVSAYSQHLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI++ATPGR L + + + LS+++
Sbjct: 123 RGGVDILIATPGRLLDLEHQNAVDLSNVE 151
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V + +L+S + GG S++ Q +L DI++ATPGR L + + + LS++++ +
Sbjct: 95 VSAYSQHLRLRSLVVFGGVSINPQMMKLRGGVDILIATPGRLLDLEHQNAVDLSNVEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 8/62 (12%)
Query: 258 IALDLVGDSTEMIHK-QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTA 316
++ + +G + E++ + Q R+ P +++ IP+VLEGRD++A A+TG+GKTA
Sbjct: 1 MSFETLGLNAEILRAVEEQGYREPTPIQRQ-------AIPVVLEGRDLMASAQTGTGKTA 53
Query: 317 CF 318
F
Sbjct: 54 GF 55
>gi|429327812|gb|AFZ79572.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 430
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D K G F+ + L E+L G+ ++G++ P+PIQ ++IP+ L G D++A A+
Sbjct: 43 DKRFKTEDVTKTKGSEFEDYFLKRELLMGIFEKGFERPSPIQEESIPVALAGHDILARAK 102
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA F+IP+LEKL T + S ++ LIL PTRELALQT VKELGK+ +Q
Sbjct: 103 NGTGKTAAFVIPLLEKLNT--SHSHIQGLILLPTRELALQTAAVVKELGKYLDVQCMVST 160
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFL 169
GG S+ N R + I+ TPGR L
Sbjct: 161 GGTSLRNDIMRFYKPVHILCGTPGRIL 187
>gi|298385203|ref|ZP_06994762.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
gi|383122089|ref|ZP_09942788.1| hypothetical protein BSIG_5243 [Bacteroides sp. 1_1_6]
gi|251837561|gb|EES65653.1| hypothetical protein BSIG_5243 [Bacteroides sp. 1_1_6]
gi|298262347|gb|EFI05212.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
Length = 374
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 97/149 (65%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ + +LK + ++GY +PTPIQ K IP+ L +D++ A+TG+GKTA F IP+++
Sbjct: 3 FKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPIIQH 62
Query: 99 L---KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L K SG++ALIL+PTRELALQ + +++ K+T+++ + GG + Q LH
Sbjct: 63 LHLNKGEGKRSGIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDMLH 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI+VATPGR L ++ + ++L +IQY
Sbjct: 123 KGIDILVATPGRLLDLMNQGHIRLDNIQY 151
>gi|440793408|gb|ELR14592.1| atpdependent rna helicase ddx6, putative [Acanthamoeba castellanii
str. Neff]
Length = 407
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGK 87
T D G F+ + L E+L G+ ++G++ P+PIQ + IP+ L GRD++A A+ G+GK
Sbjct: 32 TEDVTTTKGNEFEDYYLKRELLMGIYEKGFENPSPIQEEAIPIALAGRDILARAKNGTGK 91
Query: 88 TACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
TA FLIP LE++ T ++ALIL PTRELALQT + KELGK ++ GG S+
Sbjct: 92 TASFLIPALERINTEQNI--IQALILVPTRELALQTSQVCKELGKHMNVKVMVTTGGTSL 149
Query: 148 DNQFARLHASPDIVVATPGRFLHI 171
RLH+ I+VATPGR L +
Sbjct: 150 KEDIMRLHSVVHILVATPGRVLDL 173
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFL 319
+ ++ IP+ L GRD++A A+ G+GKTA FL
Sbjct: 67 IQEEAIPIALAGRDILARAKNGTGKTASFL 96
>gi|294139294|ref|YP_003555272.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 478
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 88/135 (65%), Gaps = 2/135 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V +GY+ P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 3 FTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A VRAL+L+PTRELA Q + V+ GK+ L+S + GG + Q ++L
Sbjct: 63 LSRGNRAQAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKLGK 122
Query: 157 SPDIVVATPGRFLHI 171
DI+VATPGR L +
Sbjct: 123 GVDILVATPGRLLDL 137
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP VLEG+DV+A A+TG+GKTA F RGN
Sbjct: 31 AIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSRGN 67
>gi|121611662|ref|YP_999469.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121556302|gb|ABM60451.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 581
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +LK V + GY+ PTPIQ + IP VL G D++A A+TG+GKTA F +P+L +
Sbjct: 3 FDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPILHR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A G+RAL+L+PTRELA Q + V+E GK+ + ST + GG M Q
Sbjct: 63 LSQNPAAKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLAIDSTVVFGGVGMAPQIE 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
RL DI+VATPGR L + + + L+S+Q
Sbjct: 123 RLQRGVDILVATPGRLLDLQQQGFVDLASVQ 153
>gi|384248900|gb|EIE22383.1| cytoplasmic DExD/H-box RNA helicase [Coccomyxa subellipsoidea
C-169]
Length = 415
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D G F+ + L E+L G+ ++G++ P+PIQ ++IP+ L GRD++A A+
Sbjct: 27 DARIRTEDVTNTKGNEFEDYVLKRELLMGIYEKGFEKPSPIQEESIPIALTGRDILARAK 86
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA F IP+LE++ T + + ++A+IL PTRELALQT + KELGK ++
Sbjct: 87 NGTGKTAAFTIPLLERIDT--SKNEIQAMILVPTRELALQTSQVCKELGKHLGVEVMVTT 144
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFL 169
GG S+ + RLHA I+VATPGR L
Sbjct: 145 GGTSLRDDIMRLHAVVHIMVATPGRIL 171
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T + KELGK ++ GG S+ + RLHA I+VATPGR L + + KL+
Sbjct: 125 TSQVCKELGKHLGVEVMVTTGGTSLRDDIMRLHAVVHIMVATPGRILDLSSKGVAKLNKC 184
Query: 245 QLSLTD 250
++ + D
Sbjct: 185 KMLVMD 190
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
+ +++IP+ L GRD++A A+ G+GKTA F R D
Sbjct: 67 IQEESIPIALTGRDILARAKNGTGKTAAFTIPLLERID 104
>gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
Length = 498
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 96/148 (64%), Gaps = 6/148 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+L V GY PTPIQ + IP +L G+DV+A A+TG+GKTA F +P+L +
Sbjct: 7 FAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLLYR 66
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L+ +A TS VRALI++PTRELA+Q + V++ GK+ L++ + GG +++ Q A
Sbjct: 67 LQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQIA 126
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLS 180
L A +I+VATPGR L +V + + S
Sbjct: 127 ALQAGVEILVATPGRLLDLVEQKAVNFS 154
>gi|340375054|ref|XP_003386052.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like
[Amphimedon queenslandica]
Length = 444
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 17 VTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD 76
+ I D T D ++ G F+ + L ++L G+ ++GY+ P+PIQ ++IP+ L GRD
Sbjct: 25 LAIPPKDKRKQTEDVARRKGNEFEDYCLKRDLLMGIFEKGYEAPSPIQEESIPIALAGRD 84
Query: 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136
++A A+ G+GKT +LIP+LEK+ T + +++L++ PTRELALQT + ELGK
Sbjct: 85 ILARAKNGTGKTGAYLIPLLEKIDTDK--THIQSLVIVPTRELALQTSQLCIELGKHMNA 142
Query: 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ GG S+ + RL + I+VATPGR L ++ + K+ + Q
Sbjct: 143 RVMVTTGGTSLRDDIMRLDETVHIIVATPGRILDLIEKGVAKMGACQ 189
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 169 LHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPG 228
L IV EL L + Q ELGK + GG S+ + RL + I+VATPG
Sbjct: 117 LVIVPTRELALQTSQLCI----ELGKHMNARVMVTTGGTSLRDDIMRLDETVHIIVATPG 172
Query: 229 RFLHIVVEMELKLSSIQLSLTD 250
R L ++ + K+ + Q+ + D
Sbjct: 173 RILDLIEKGVAKMGACQILVLD 194
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333
+ +++IP+ L GRD++A A+ G+GKT +L + D +I
Sbjct: 71 IQEESIPIALAGRDILARAKNGTGKTGAYLIPLLEKIDTDKTHI 114
>gi|32267267|ref|NP_861299.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
gi|32263320|gb|AAP78365.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
Length = 530
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 8/157 (5%)
Query: 13 EDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL 72
E P+VTI K K+ GF FGL VLKG+ + G+ P+P+Q ++IP++L
Sbjct: 26 ESPSVTIKQG-----LKSKHKQDTQGFDVFGLKDFVLKGIREAGFSTPSPVQSQSIPIIL 80
Query: 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132
+G+D++A A+TG+GKTA F IP+L L + + ALI++PTRELA+Q + + +LG+
Sbjct: 81 QGKDLIAQAQTGTGKTAAFAIPILNTLNRN---KDIEALIITPTRELAMQISEEILKLGR 137
Query: 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
F ++++ C+ GG S+ Q L P ++ATPGR L
Sbjct: 138 FGRIKTICMYGGQSIKRQCDLLEKKPKAMIATPGRLL 174
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
V +IP++L+G+D++A A+TG+GKTA F +R
Sbjct: 71 VQSQSIPIILQGKDLIAQAQTGTGKTAAFAIPILNTLNRN 110
>gi|255081756|ref|XP_002508100.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
gi|226523376|gb|ACO69358.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
Length = 464
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 101/165 (61%), Gaps = 2/165 (1%)
Query: 17 VTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD 76
+ + D+ T D G F+ + L E+L G+ ++G++ P+PIQ ++IP+ L GRD
Sbjct: 70 LALPPRDERYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGRD 129
Query: 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136
++A A+ G+GKTA F IP+LE KT + + ++A++L PTRELALQT + KELGK +
Sbjct: 130 ILARAKNGTGKTAAFTIPVLE--KTDTSKNVIQAVLLVPTRELALQTSQVCKELGKHLNV 187
Query: 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSS 181
Q GG S+ + RLH IVVATPGR + + + KL+
Sbjct: 188 QVMVTTGGTSLKDDIMRLHQPVHIVVATPGRLVDLASKGVAKLNQ 232
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T + KELGK +Q GG S+ + RLH IVVATPGR + + + KL+
Sbjct: 174 TSQVCKELGKHLNVQVMVTTGGTSLKDDIMRLHQPVHIVVATPGRLVDLASKGVAKLNQC 233
Query: 245 QLSLTD 250
+ D
Sbjct: 234 TMLAMD 239
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ +++IP+ L GRD++A A+ G+GKTA F
Sbjct: 116 IQEESIPIALTGRDILARAKNGTGKTAAF 144
>gi|213421826|ref|ZP_03354892.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 143
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 93/135 (68%), Gaps = 4/135 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFL 169
D++VATPGR L
Sbjct: 123 RGGVDVLVATPGRLL 137
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|419865132|ref|ZP_14387522.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H25 str.
CVM9340]
gi|388338203|gb|EIL04676.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H25 str.
CVM9340]
Length = 454
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ + S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNICSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|320527000|ref|ZP_08028189.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
F0204]
gi|320132585|gb|EFW25126.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
F0204]
Length = 459
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F L +L V K Y+ P+PIQ K IP++LEG+D+VA A+TG+GKTA F +P+L
Sbjct: 2 NFTDLELKEPILSAVNKAKYETPSPIQEKAIPVMLEGKDIVACAQTGTGKTAAFALPILN 61
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
KL+ + +RAL+L+PTRELA+Q F+ K+ G++ KL++ C+ GG Q L +
Sbjct: 62 KLE-YKKKHQIRALVLTPTRELAVQIFENFKKFGRYLKLRACCVYGGAPSGPQRKALRSG 120
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
DI++ATPGR +V+ E+ LS I+
Sbjct: 121 CDILIATPGRLNDFMVQGEIILSDIE 146
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
+ + IP++LEG+D+VA A+TG+GKTA F + +
Sbjct: 27 IQEKAIPVMLEGKDIVACAQTGTGKTAAFALPILNKLE 64
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 96/148 (64%), Gaps = 4/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F + +++ + + G++ P+PIQ K IP +LEG D++ A+TG+GKTA F IP+LEK
Sbjct: 4 FEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPILEK 63
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LK T V+A+IL+PTRELA+Q +++L KF K+Q+ + GG S+ Q +L
Sbjct: 64 LKR---TKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIKQLKRGV 120
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQYTF 186
DIVV TPGR L V L LS I +TF
Sbjct: 121 DIVVGTPGRVLDHVNRKTLDLSKI-HTF 147
>gi|422748197|ref|ZP_16802110.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|433011473|ref|ZP_20199877.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE229]
gi|433162588|ref|ZP_20347347.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE179]
gi|323953540|gb|EGB49406.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|431518088|gb|ELH95608.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE229]
gi|431691258|gb|ELJ56718.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE179]
Length = 453
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VR LIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRTLILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 545
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+L+ V GY PTPIQR+ IP+V+ G+DV+ A+TG+GKTA F +P+L +
Sbjct: 3 FADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLHR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
+ HA TS RALIL+PTRELA+Q F+ VK K L+S C+ GG + Q A
Sbjct: 63 IARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQQA 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +IV+ATPGR L + + + LS ++
Sbjct: 123 ELRRGIEIVIATPGRLLDHLEQKSINLSQVE 153
>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
DMS010]
gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
DMS010]
Length = 442
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +L+ + ++GY P+PIQ K IP +++G DV+A A+TG+GKTA F +P+L +
Sbjct: 3 FSSLGLADPILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLLHR 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L + A+ + VRAL+L+PTRELA Q V+ GKF L+ST + GG ++ Q RL
Sbjct: 63 LASGKPASANQVRALVLTPTRELAAQVADSVQTYGKFLPLRSTVVFGGVKINPQMMRLRR 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + ++ ++
Sbjct: 123 GADILVATPGRLLDLYQQNAVRFDHLE 149
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V+ GKF L+ST + GG ++ Q RL DI+VATPGR L + + ++ +++ +
Sbjct: 93 VQTYGKFLPLRSTVVFGGVKINPQMMRLRRGADILVATPGRLLDLYQQNAVRFDHLEVLI 152
Query: 249 TD 250
D
Sbjct: 153 LD 154
>gi|308805024|ref|XP_003079824.1| putative RNA helicase (ISS) [Ostreococcus tauri]
gi|116058281|emb|CAL53470.1| putative RNA helicase (ISS) [Ostreococcus tauri]
Length = 425
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
T+ I + D T D G F+ + L E+L G+ ++G++ P+PIQ ++IP+ L GR
Sbjct: 30 TLAIPAKDTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGR 89
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
D++A A+ G+GKTA F IP+LEK+ T + + ++A+IL PTRELALQT + KELGK
Sbjct: 90 DILARAKNGTGKTAAFSIPILEKVDT--SKNIIQAVILVPTRELALQTSQVCKELGKHLG 147
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
+ GG S+ + RLH +VVATPGR +
Sbjct: 148 VAVMVTTGGTSLKDDIMRLHQPVHVVVATPGRLV 181
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ +++IP+ L GRD++A A+ G+GKTA F
Sbjct: 77 IQEESIPIALTGRDILARAKNGTGKTAAF 105
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL-SS 243
T + KELGK + GG S+ + RLH +VVATPGR + + + KL +
Sbjct: 135 TSQVCKELGKHLGVAVMVTTGGTSLKDDIMRLHQPVHVVVATPGRLVDLASKGVAKLGQA 194
Query: 244 IQLSLTDFKQDTSRIALDLVGDSTEMIHKQRQ 275
L++ + + S ++G + K RQ
Sbjct: 195 TMLAMDEADKLLSPEFQPVIGQVINFMAKNRQ 226
>gi|78485359|ref|YP_391284.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78363645|gb|ABB41610.1| DEAD/DEAH box helicase family protein [Thiomicrospira crunogena
XCL-2]
Length = 393
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 91/148 (61%), Gaps = 2/148 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL ++K V +RGY PT IQ++ IP++L G+D++A A+TG+GKTA F++P+LEK
Sbjct: 3 FSKLGLSDPIVKAVSERGYDAPTDIQKQAIPIILSGKDLMAAAQTGTGKTASFVLPLLEK 62
Query: 99 LKTHAATSG--VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T A G +RALIL PTRELA+Q V + K L S GG +D Q RL
Sbjct: 63 LNTDNAIRGRSIRALILVPTRELAMQVETNVVDYAKHLNLSSMAAYGGTDIDAQKQRLMQ 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI+VATPGR L + + L +++
Sbjct: 123 GIDILVATPGRLLDLAYQRALFFDDLEF 150
>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 550
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VL+G+DV+A A+TG+GKTA F +P+LE
Sbjct: 14 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLEL 73
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K A +G VR L+L+PTRELA Q + V+ GK+ L+S + GG ++ Q A+L
Sbjct: 74 LSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRH 133
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K + ++
Sbjct: 134 GVDVLVATPGRLMDLYNQKAVKFNQLE 160
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK + ++GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q A
Sbjct: 73 LLPLANTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSA 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L V + L +Q
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|440684899|ref|YP_007159694.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
gi|428682018|gb|AFZ60784.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
Length = 450
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 97/152 (63%), Gaps = 7/152 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+++ V +RGY PTPIQ + IP VL G D++A A+TG+GKTA F +P+L K
Sbjct: 3 FSNLGLSNEIIRAVTERGYTKPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLLHK 62
Query: 99 LKTHAATSG-------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
L + +RALIL+PTRELA Q + V + GK+ KL+ST + GG S++ Q
Sbjct: 63 LSSDQNVKSSAIGWLPIRALILTPTRELAAQVEESVHDYGKYLKLKSTVVFGGVSINPQK 122
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L + DI+VATPGR L + + + LS I+
Sbjct: 123 RQLKSGVDILVATPGRLLDHLQQGTVNLSRIE 154
>gi|386314915|ref|YP_006011080.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 539
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VL+G+DV+A A+TG+GKTA F +P+LE
Sbjct: 3 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K A +G VR L+L+PTRELA Q + V+ GK+ L+S + GG ++ Q A+L
Sbjct: 63 LSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRH 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K + ++
Sbjct: 123 GVDVLVATPGRLMDLYNQKAVKFNQLE 149
>gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
Length = 522
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK + ++GY P+PIQ K IP +LEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L + + VRALIL+PTRELA Q + V G+ L S + GG ++ Q RL
Sbjct: 62 RLSNGSRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMQRLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K ++
Sbjct: 122 KGADVLVATPGRLMDLYNQNAVKFDQLE 149
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP +LEG+DV+A A+TG+GKTA F R G
Sbjct: 31 AIPAILEGKDVMAAAQTGTGKTAGFTLPILERLSNG 66
>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 445
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 93/147 (63%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +L V ++GY+ P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE+
Sbjct: 3 FASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A + RALIL+PTRELA Q V+ GK L+ST + GG ++ Q RL
Sbjct: 63 LSKGKPAGPNQARALILTPTRELAAQVSDSVETYGKQLSLKSTVVFGGVKINPQMMRLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + +K ++
Sbjct: 123 GVDILVATPGRLLDLFNQNAIKFDQLE 149
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP VLEG+DV+A A+TG+GKTA F R +G
Sbjct: 32 IPAVLEGKDVMAAAQTGTGKTAGFTLPILERLSKG 66
>gi|401676603|ref|ZP_10808587.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. SST3]
gi|400216287|gb|EJO47189.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. SST3]
Length = 459
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE- 97
F S GL E+L+ + ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+LE
Sbjct: 3 FDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62
Query: 98 --KLKTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
K + HA VRALIL+PTRELA Q + V++ ++ ++S + GG S++ Q +L
Sbjct: 63 LVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL +I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDNIE 151
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|330448478|ref|ZP_08312126.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328492669|dbj|GAA06623.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 494
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +L V K+GY+ P+PIQ K IP +LEG+DV+A A+TG+GKTA F +P+LE+
Sbjct: 3 FASLGLSAPILDAVAKQGYEKPSPIQEKAIPAILEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A ++ VRAL+L+PTRELA Q + V GK ++ S + GG ++ Q R+
Sbjct: 63 LAGGCPARSNHVRALVLTPTRELAAQVGESVATYGKNLRISSAVVFGGVKVNPQMLRMRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K I+
Sbjct: 123 GADVLVATPGRLMDLHSQNAVKFRDIE 149
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 285 KKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+K + + IP +LEG+DV+A A+TG+GKTA F R G
Sbjct: 22 EKPSPIQEKAIPAILEGKDVMAAAQTGTGKTAGFTLPLLERLAGG 66
>gi|381150962|ref|ZP_09862831.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
gi|380882934|gb|EIC28811.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
Length = 425
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL +LK V ++GY PTPIQ++TIPL+L+GRDV+A A+TG+GKTA F +P+L++
Sbjct: 3 FAQLGLAAPLLKAVAEQGYVTPTPIQQQTIPLILDGRDVLAGAQTGTGKTASFTLPLLQR 62
Query: 99 LKTH----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L +RALIL+PTRELA Q V+ GK L + ++GG S++ Q L
Sbjct: 63 LAESNDKPQKPRKIRALILAPTRELAAQVHDSVRAYGKHLPLFAEVVVGGVSINGQIRSL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DIVVATPGR L +++ ++LS ++
Sbjct: 123 QRGCDIVVATPGRLLDHLLQKNIELSHLE 151
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
A++ YV T TIPL+L+GRDV+A A+TG+GKTA F R N
Sbjct: 17 AEQGYVTPTPIQQQTIPLILDGRDVLAGAQTGTGKTASFTLPLLQRLAESN 67
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V+ GK L + ++GG S++ Q L DIVVATPGR L +++ ++LS +++ +
Sbjct: 95 VRAYGKHLPLFAEVVVGGVSINGQIRSLQRGCDIVVATPGRLLDHLLQKNIELSHLEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
>gi|333909234|ref|YP_004482820.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333479240|gb|AEF55901.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 457
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL +LK + ++GY P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LEK
Sbjct: 3 FTKLGLSAPILKAIEEQGYTEPSPIQAQAIPAVLEGQDVMAAAQTGTGKTAGFTLPLLEK 62
Query: 99 LKTH--AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A ++ VRAL+L+PTRELA Q + VK G+ L+ST + GG ++ Q L
Sbjct: 63 LSAGPLAKSNQVRALVLTPTRELAAQVAESVKNYGQHLPLKSTVVFGGVKINPQMMALRR 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + LK ++
Sbjct: 123 GADVLIATPGRLLDLYNQNALKFDQLE 149
>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
Length = 515
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+LK VL G+ PTPIQ + IPL ++G D++ A+TG+GKTA F IP+L K
Sbjct: 4 FNELGLQEELLKAVLDMGFDSPTPIQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPLLSK 63
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
++ V+ALIL+PTRELALQ + + L K+ +++ + GG+ + Q L +P
Sbjct: 64 IEK--GNKAVQALILAPTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQIRGLKKNP 121
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
IVVATPGRF+ + + L++IQ
Sbjct: 122 QIVVATPGRFMDHMRRNTINLANIQ 146
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
+ + IPL ++G D++ A+TG+GKTA F + ++GN
Sbjct: 28 IQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPLLSKIEKGN 68
>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 550
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VL+G+DV+A A+TG+GKTA F +P+LE
Sbjct: 14 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLEL 73
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K A +G VR L+L+PTRELA Q + V+ GK+ L+S + GG ++ Q A+L
Sbjct: 74 LSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRH 133
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K + ++
Sbjct: 134 GVDVLVATPGRLMDLYNQKAVKFNQLE 160
>gi|284040525|ref|YP_003390455.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283819818|gb|ADB41656.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 475
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L ++L V + GY +PTPIQ+KTIPL L DV+ +A+TG+GKTA +L+P+L K
Sbjct: 6 FEQFELNRQLLNAVAELGYTVPTPIQQKTIPLSLGNHDVLGIAQTGTGKTAAYLLPILMK 65
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+K +A RALIL+PTREL +Q + V ELGK+T L+ L GG Q L
Sbjct: 66 VK-YAQGKNPRALILAPTRELVMQINQAVSELGKYTDLRHLALYGGLGPKTQIETLRNGV 124
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGRF+ + E+ I+
Sbjct: 125 DIIVATPGRFMDLYRSGEIVTKEIR 149
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V ELGK+T L+ L GG Q L DI+VATPGRF+ + E+ I+ +
Sbjct: 93 VSELGKYTDLRHLALYGGLGPKTQIETLRNGVDIIVATPGRFMDLYRSGEIVTKEIRTMV 152
Query: 249 TD 250
D
Sbjct: 153 LD 154
>gi|414076887|ref|YP_006996205.1| ATP-dependent helicase [Anabaena sp. 90]
gi|413970303|gb|AFW94392.1| ATP-dependent helicase [Anabaena sp. 90]
Length = 446
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 96/152 (63%), Gaps = 7/152 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+++ V +RGY PTPIQ++ IP+VL G D++A A+TG+GKTA F +P+L +
Sbjct: 3 FSNLGLSPEIVRAVTERGYNQPTPIQKQAIPVVLAGGDIMAGAQTGTGKTASFTLPLLHR 62
Query: 99 LKTHAAT-------SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
L + S +RALIL+PTRELA Q + V++ GK+ L S + GG S+ Q
Sbjct: 63 LSANKNVPSHSTGFSPIRALILTPTRELAAQVQESVRDYGKYLNLNSMVMFGGVSIGPQK 122
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+V+TPGR L V + L LS ++
Sbjct: 123 QKLRTRVDILVSTPGRLLDHVQQGTLNLSRVE 154
>gi|299530317|ref|ZP_07043742.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
gi|298721688|gb|EFI62620.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
Length = 613
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L +LK V ++GY+ PTPIQ + IPLVL G D++A A+TG+GKTA F +PML++
Sbjct: 3 FEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQR 62
Query: 99 LKTHAAT------SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + AA G+R L+L+PTRELA Q + ++ K+ + ST + GG M Q A
Sbjct: 63 LASGAAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQIA 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ D++VATPGR L + + + LS+++
Sbjct: 123 RIEKGVDVLVATPGRLLDLAGQGFMDLSTVE 153
>gi|251790108|ref|YP_003004829.1| DEAD/DEAH box helicase domain-containing protein [Dickeya zeae
Ech1591]
gi|247538729|gb|ACT07350.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
Length = 455
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 98/148 (66%), Gaps = 4/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++L+ V ++GY+ PTP+QR+ IP+VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + VRALIL+PTRELA Q + V K+ +L+S + GG S++ Q +L
Sbjct: 63 LNERPVLAKGRRPVRALILTPTRELAAQIGENVLAYSKYLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSI 182
DI++ATPGR L + + + LS +
Sbjct: 123 RGGVDILIATPGRLLDLEHQNAVDLSQV 150
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
V IP+VLEGRD++A A+TG+GKTA F
Sbjct: 27 VQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|294880787|ref|XP_002769151.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239872302|gb|EER01869.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 210
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGK 87
T D G F+ + L E+L G+ ++G++ P+PIQ ++IP L G++++A A+ G+GK
Sbjct: 59 TTDVTATKGNDFEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGK 118
Query: 88 TACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
TA FLIPMLEK+ T T G++ L+L PTRELALQT KELGK+ Q GG S+
Sbjct: 119 TASFLIPMLEKVNTD-ITDGIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSL 177
Query: 148 DNQFARLHASPDIVVATPGRFLHI 171
+ RL+ + I+V TPGR L +
Sbjct: 178 RDDIMRLYNTVHILVGTPGRVLDL 201
>gi|257092638|ref|YP_003166279.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257045162|gb|ACV34350.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 481
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 7/156 (4%)
Query: 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
M F GL E+ + V +GY PTP+Q + IP++L GRDV+A A+TG+GKTA F +P
Sbjct: 1 MSHSFALLGLSAELTRAVDDQGYSEPTPVQAQAIPVILAGRDVLAGAQTGTGKTAGFTLP 60
Query: 95 MLEKLKTHAATSG-------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
+L++L T AA +G VRALIL+PTRELA Q + V+ GK+ L+ST + GG ++
Sbjct: 61 LLQRLATRAAPAGVPGQRSPVRALILTPTRELAAQIEESVRTYGKYLPLKSTLIYGGVNI 120
Query: 148 DNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ Q L DI+VATPGR L + + + L+ ++
Sbjct: 121 NPQIDALRRGVDILVATPGRLLDHLQQKTVSLAQVE 156
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK V + GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q
Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSE 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I++ATPGR L V + L +Q
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 502
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ FGL E+LK + +GY PTPIQ + IP+VL+G DV+ A+TG+GKTA F +P+++
Sbjct: 25 FQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQL 84
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA +S VRALIL+PTRELA Q VK + T L+S + GG M Q A
Sbjct: 85 LMAHANSSASPARHPVRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTA 144
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +IV+ATPGR L V + + LS Q
Sbjct: 145 ALRGGVEIVIATPGRLLDHVQQKTINLSQTQ 175
>gi|410621771|ref|ZP_11332615.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158664|dbj|GAC27989.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 421
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL VL+ + ++GYK P+PIQ + IP+VLEG+DV+A A+TG+GKTA F +P+L
Sbjct: 3 FKSLGLSPLVLQAIEEKGYKQPSPIQEQGIPVVLEGKDVMAAAQTGTGKTAAFTLPILSM 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
+ T AA + V+ALIL+PTRELA Q + ++ GK L++ + GG ++ Q +L
Sbjct: 63 FENTTPAAANNVKALILTPTRELAAQIDENIRSYGKHLNLKTQVVFGGVGINPQMIKLRR 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR + + + +K S ++
Sbjct: 123 GVDILVATPGRLMDLYQQRAVKFSQLE 149
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
+ + IP+VLEG+DV+A A+TG+GKTA F F+
Sbjct: 27 IQEQGIPVVLEGKDVMAAAQTGTGKTAAFTLPILSMFE 64
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
++ GK L++ + GG ++ Q +L DI+VATPGR + + + +K S +++ +
Sbjct: 93 IRSYGKHLNLKTQVVFGGVGINPQMIKLRRGVDILVATPGRLMDLYQQRAVKFSQLEILV 152
Query: 249 TD 250
D
Sbjct: 153 LD 154
>gi|403359121|gb|EJY79218.1| Dead box ATP-dependent RNA helicase [Oxytricha trifallax]
Length = 263
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D + G FQ FGL EV G+ + G++ P+PIQ +TIPL LE ++++A A+
Sbjct: 26 DTRFKTEDVQSTKGLTFQDFGLSEEVQLGIYEMGFESPSPIQEETIPLALENKNIIARAK 85
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA + IP+++K+ T + + ++AL+L PTRELA+QT +KELGK K++S
Sbjct: 86 NGTGKTASYSIPIIQKVDT--SKNQIQALVLVPTRELAMQTSLVIKELGKHKKIESMVST 143
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFL 169
GG S+ RL+ + ++V TPGR L
Sbjct: 144 GGTSVKEDIYRLYQTVHVIVGTPGRIL 170
>gi|357403915|ref|YP_004915839.1| ATP-dependent RNA helicase [Methylomicrobium alcaliphilum 20Z]
gi|351716580|emb|CCE22240.1| ATP-dependent RNA helicase [Methylomicrobium alcaliphilum 20Z]
Length = 425
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++ V ++GYK PTPIQ+K IPL+L+GRDV+A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLIAQLQTAVAEQGYKTPTPIQQKAIPLILDGRDVMAGAQTGTGKTAGFALPILQR 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L + VRALIL PTRELA+Q + K+ GK L S + GG SM+ Q +L
Sbjct: 63 LSETINKKPRPVRALILVPTRELAVQVHQSFKDYGKHVALFSEVIFGGVSMNGQAQQLRR 122
Query: 157 SPDIVVATPGRFL 169
DIVVATPGR L
Sbjct: 123 GCDIVVATPGRLL 135
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 165 PGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVV 224
P R L +V EL ++Q F K+ GK L S + GG SM+ Q +L DIVV
Sbjct: 73 PVRALILVPTREL---AVQVHQSF-KDYGKHVALFSEVIFGGVSMNGQAQQLRRGCDIVV 128
Query: 225 ATPGRFLHIVVEMELKLSSIQLSLTD 250
ATPGR L + + L +++ + D
Sbjct: 129 ATPGRLLDHARQGNVDLGRVEILVLD 154
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ IPL+L+GRDV+A A+TG+GKTA F R
Sbjct: 27 IQQKAIPLILDGRDVMAGAQTGTGKTAGFALPILQRL 63
>gi|403359120|gb|EJY79217.1| hypothetical protein OXYTRI_23511 [Oxytricha trifallax]
Length = 414
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 94/142 (66%), Gaps = 2/142 (1%)
Query: 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGK 87
T D + G FQ FGL EV G+ + G++ P+PIQ +TIPL LE ++++A A+ G+GK
Sbjct: 31 TEDVQSTKGLTFQDFGLSEEVQLGIYEMGFESPSPIQEETIPLALENKNIIARAKNGTGK 90
Query: 88 TACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
TA + IP+++K+ T + + ++AL+L PTRELA+QT +KELGK K++S GG S+
Sbjct: 91 TASYSIPIIQKVDT--SKNQIQALVLVPTRELAMQTSLVIKELGKHKKIESMVSTGGTSV 148
Query: 148 DNQFARLHASPDIVVATPGRFL 169
RL+ + ++V TPGR L
Sbjct: 149 KEDIYRLYQTVHVIVGTPGRIL 170
>gi|302878537|ref|YP_003847101.1| DEAD/DEAH box helicase [Gallionella capsiferriformans ES-2]
gi|302581326|gb|ADL55337.1| DEAD/DEAH box helicase domain protein [Gallionella
capsiferriformans ES-2]
Length = 461
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 6/153 (3%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
F L E+L+ +++ GY PTPIQ + IPLVLEG D++A A+TG+GKTA F +P+L
Sbjct: 2 NNFADLNLAPEILRALIESGYTKPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAFALPVL 61
Query: 97 EKLKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
+KL A++S VRALIL PTRELA+Q VK K++ L+S + GG + Q
Sbjct: 62 QKLMPFASSSPSPARHAVRALILVPTRELAIQVEASVKAYAKYSHLRSLVVFGGVDIKTQ 121
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L A +I+VATPGR L + + ++L+ +Q
Sbjct: 122 TPHLRAGIEILVATPGRLLDHIEQKSVQLNQVQ 154
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 286 KYVQVTDDTIPLVLEGRDVVAMARTGSGKTACF 318
K + IPLVLEG D++A A+TG+GKTA F
Sbjct: 24 KPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAF 56
>gi|329120622|ref|ZP_08249285.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327460846|gb|EGF07180.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 455
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 94/153 (61%), Gaps = 6/153 (3%)
Query: 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
F S GLG E++ + ++GY+ PTPIQ IP VL G D++A A+TG+GKTA F++P L
Sbjct: 2 NAFSSLGLGAEIVSALAEQGYETPTPIQAAAIPKVLAGHDLLAAAQTGTGKTAAFMLPAL 61
Query: 97 EKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
E+LK +A TS VR L+L+PTRELA Q K V+ K L+ T L GG +MD Q
Sbjct: 62 ERLKRYANTSASPAMHPVRMLVLTPTRELADQIDKNVQAYIKNLPLRHTVLFGGVNMDKQ 121
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
A L +IVVAT GR L V + + + I+
Sbjct: 122 TADLRVGCEIVVATVGRLLDHVKQKNINFAKIE 154
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK + + GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 35 FDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q
Sbjct: 95 LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 154
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I++ATPGR L V + L +Q
Sbjct: 155 QLRRGVEILIATPGRLLDHVQQKTANLGQVQ 185
>gi|354722649|ref|ZP_09036864.1| ATP-dependent RNA helicase RhlE [Enterobacter mori LMG 25706]
Length = 461
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE- 97
F S GL E+L+ + ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+LE
Sbjct: 3 FDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62
Query: 98 --KLKTHAAT-SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
K + HA + VRALIL+PTRELA Q + V++ ++ ++S + GG S++ Q +L
Sbjct: 63 LVKNQPHAKSRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 432
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 96/149 (64%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+SF E+L+ + + GY+ TPIQ++ IP V G+DV+A A+TG+GKTA F +P+L+K
Sbjct: 3 FESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+ + +T+G RALIL+PTRELA Q + + K+ L+ + GG MD+Q +L
Sbjct: 63 MLDNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDLKVVTVYGGVKMDSQATKLK 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR L ++ L LS++ +
Sbjct: 123 RGADIIIATPGRLLEHIIACNLSLSNVDF 151
>gi|124007618|ref|ZP_01692322.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
gi|123986916|gb|EAY26681.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
Length = 441
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L ++L+ + GY+ PTPIQ K IPLVL G DV+ +A+TG+GKTA F++P+L +
Sbjct: 6 FEDFKLNKQILQAITDSGYENPTPIQEKAIPLVLAGHDVMGVAQTGTGKTAAFVLPILMR 65
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+K +A RALIL+PTRELA+Q K V+ + T ++ TC+ GG Q + A
Sbjct: 66 IK-YAQGMHPRALILAPTRELAIQIEKAVETYSQHTDIRFTCVYGGLGPKTQIETIQAGV 124
Query: 159 DIVVATPGRFLHIVVEMELKLSSI 182
DIV+ATPGR L + EL L I
Sbjct: 125 DIVIATPGRLLDLYSREELVLKDI 148
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ + IPLVL G DV+ +A+TG+GKTA F+ R
Sbjct: 30 IQEKAIPLVLAGHDVMGVAQTGTGKTAAFVLPILMRI 66
>gi|74311340|ref|YP_309759.1| ATP-dependent RNA helicase RhlE [Shigella sonnei Ss046]
gi|383177421|ref|YP_005455426.1| ATP-dependent RNA helicase RhlE [Shigella sonnei 53G]
gi|414575042|ref|ZP_11432248.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3233-85]
gi|415850222|ref|ZP_11527142.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
gi|418263069|ref|ZP_12884253.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei str. Moseley]
gi|420357517|ref|ZP_14858525.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3226-85]
gi|420362435|ref|ZP_14863351.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei 4822-66]
gi|73854817|gb|AAZ87524.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
gi|323165715|gb|EFZ51501.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
gi|391287551|gb|EIQ46075.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3226-85]
gi|391287991|gb|EIQ46500.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3233-85]
gi|391296008|gb|EIQ54124.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei 4822-66]
gi|397902862|gb|EJL19172.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei str. Moseley]
Length = 454
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDYLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
>gi|406915896|gb|EKD54936.1| hypothetical protein ACD_60C00032G0020 [uncultured bacterium]
Length = 457
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 88/145 (60%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F F L + K + GYK PTP+Q K+IP +L+G+DVVA A+TG+GKTA F++P L +
Sbjct: 3 FAEFNLNPHIFKAIDACGYKNPTPVQAKSIPEILQGKDVVASAQTGTGKTASFVLPALHR 62
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L T A+ R LIL+PTRELA Q V + GKF ++ L+GG Q L
Sbjct: 63 LSTSKASHKPRILILTPTRELATQITTAVTKYGKFLRVNIASLVGGMPYRQQLRSLSKPV 122
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + L LS+I+
Sbjct: 123 DIIVATPGRLLDHMSNRRLDLSAIE 147
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
V +IP +L+G+DVVA A+TG+GKTA F+ R
Sbjct: 27 VQAKSIPEILQGKDVVASAQTGTGKTASFVLPALHRL 63
>gi|394988697|ref|ZP_10381532.1| DEAD/DEAH box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
gi|393792076|dbj|GAB71171.1| DEAD/DEAH box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
Length = 445
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+++ V +RGY +PTPIQ + IP V+ G D++A A+TG+GKTA F++P+L +
Sbjct: 3 FASLGLSDEIVRAVTERGYTVPTPIQMQAIPAVMSGGDLLAGAQTGTGKTAGFVLPILHR 62
Query: 99 L---KTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L +SG +RALIL PTRELA Q + V++ GK KL S ++GG +++ Q
Sbjct: 63 LSDPNVKGPSSGRPPIRALILIPTRELAAQVEESVRDYGKHLKLNSMTMIGGVNINPQIT 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L V + + LS ++
Sbjct: 123 KLRGRVDILVATPGRLLDHVQQKTVDLSHVE 153
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ GK KL S ++GG +++ Q +L DI+VATPGR L V + + LS +++ +
Sbjct: 97 VRDYGKHLKLNSMTMIGGVNINPQITKLRGRVDILVATPGRLLDHVQQKTVDLSHVEILV 156
Query: 249 TD 250
D
Sbjct: 157 LD 158
>gi|445495878|ref|ZP_21462922.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444792039|gb|ELX13586.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 463
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 96/154 (62%), Gaps = 9/154 (5%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +++ V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L +
Sbjct: 3 FSSLGLSDAIVRAVTETGYTTPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILHR 62
Query: 99 LKTHAATSGV---------RALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
L T A + + RALIL+PTRELA Q + V+ GK+TKL ST + GG ++
Sbjct: 63 LSTDANGAAITSNTTARPIRALILTPTRELAAQVEESVRTYGKYTKLNSTVIFGGVGINP 122
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
Q +L DI+VATPGR L + + + LS ++
Sbjct: 123 QIKQLKHGVDILVATPGRLLDHMEQRTVNLSKVE 156
>gi|300690871|ref|YP_003751866.1| DEAD/DEAH box helicase [Ralstonia solanacearum PSI07]
gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
PSI07]
gi|344167288|emb|CCA79493.1| ATP-dependent RNA helicase, deaD-box family [blood disease
bacterium R229]
Length = 495
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F +FGL ++L+ + + GY PTPIQ IP+V+ GRDV+ A+TG+GKTA F +P+++
Sbjct: 17 FDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQN 76
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A TS VRALIL+PTRELA Q + V + GK+T L+S + GG M+ Q
Sbjct: 77 LLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQTE 136
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I+VATPGR L V + + LS ++
Sbjct: 137 QLRRGVEILVATPGRLLDHVQQRSVNLSQVR 167
>gi|384493411|gb|EIE83902.1| ATP-dependent RNA helicase DHH1 [Rhizopus delemar RA 99-880]
Length = 523
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 3/162 (1%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKT 67
D E +++ T+ + D+ T D G F+ + L E+L G+ + G++ P+PIQ +
Sbjct: 9 DNENWKN-TLALPQKDNRPQTEDVTATKGNEFEDYFLKRELLMGIFEAGFEKPSPIQEEA 67
Query: 68 IPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127
IPL L GRD++A A+ G+GKTA F+IP LEK+ + S ++ALIL PTRELALQT +
Sbjct: 68 IPLALAGRDILARAKNGTGKTAAFIIPTLEKINN--SLSKIQALILVPTRELALQTSQVC 125
Query: 128 KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
K LGK +Q GG ++ + RL +VV TPGR L
Sbjct: 126 KTLGKHLNIQVMVTTGGTTLKDDIMRLSEPVHVVVGTPGRIL 167
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+ ++ IPL L GRD++A A+ G+GKTA F+
Sbjct: 63 IQEEAIPLALAGRDILARAKNGTGKTAAFII 93
>gi|401762889|ref|YP_006577896.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400174423|gb|AFP69272.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 460
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE- 97
F S GL E+L+ + ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+LE
Sbjct: 3 FDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62
Query: 98 --KLKTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
K + HA VRALIL+PTRELA Q + V++ ++ ++S + GG S++ Q +L
Sbjct: 63 LVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL I+
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQIE 151
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|372490012|ref|YP_005029577.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359356565|gb|AEV27736.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 474
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+LK V + GY TPIQ++ IPLVL+G+D+ A A+TG+GKTA F +P++++
Sbjct: 3 FDELGLAPEILKAVTEMGYAEATPIQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLIQR 62
Query: 99 L------KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A VRAL+L+PTRELALQ ++ VK K+T +S CL GG + Q A
Sbjct: 63 LLHLDTASPSPAKHPVRALMLAPTRELALQVYESVKSYTKYTHFRSICLFGGVDIKPQIA 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ + VVATPGR L V + + + +Q
Sbjct: 123 EMKKGVEFVVATPGRLLDHVEQKSVSFNQVQ 153
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ IPLVL+G+D+ A A+TG+GKTA F R
Sbjct: 27 IQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLIQRL 63
>gi|337278789|ref|YP_004618260.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729865|gb|AEG92241.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 606
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +LK V ++GY+ PTPIQ + IP VLEG D++A A+TG+GKTA F +PML K
Sbjct: 13 FDELKLAPAILKAVREQGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPMLHK 72
Query: 99 L-KTHAATS-----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L K T+ G+ AL+L+PTRELA Q + ++ GK+ L ST + GG M+ Q
Sbjct: 73 LTKGQGKTNKFGKDGIAALVLTPTRELAAQVEESIRTYGKYLPLTSTVIFGGVGMNPQID 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ DI+VATPGR L + + L LS+++
Sbjct: 133 RIKRGVDILVATPGRLLDLQQQGHLDLSTVE 163
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP VLEG D++A A+TG+GKTA F + +G
Sbjct: 41 AIPAVLEGHDLLAGAQTGTGKTAAFTLPMLHKLTKG 76
>gi|406939141|gb|EKD72227.1| hypothetical protein ACD_45C00735G0003 [uncultured bacterium]
Length = 427
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 105/191 (54%), Gaps = 13/191 (6%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F F L + K + GYK PTPIQ K+IP +L G+D+VA A+TG+GKTA F++P L +
Sbjct: 3 FAQFNLSPPIAKALDACGYKKPTPIQAKSIPEILLGKDIVASAQTGTGKTASFVLPALHR 62
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L T ATS R LIL+PTRELA Q + + GKF ++ L+GG Q L S
Sbjct: 63 LSTSKATSKPRILILTPTRELANQITTAIGKYGKFLRVNIASLVGGMPYRQQLRALSHSV 122
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQYT-------------FKFVKELGKFTKLQSTCLLG 205
D+++ATPGR L + L LS+I+ V+E+ K T LL
Sbjct: 123 DMIIATPGRLLDHMSHRRLDLSAIEMLILDEADRMLDMGFIDDVREIAKATPSNRQTLLF 182
Query: 206 GDSMDNQFARL 216
++DN+ +++
Sbjct: 183 SATVDNRLSQV 193
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 285 KKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
KK + +IP +L G+D+VA A+TG+GKTA F+ R
Sbjct: 22 KKPTPIQAKSIPEILLGKDIVASAQTGTGKTASFVLPALHRL 63
>gi|307109230|gb|EFN57468.1| hypothetical protein CHLNCDRAFT_56077 [Chlorella variabilis]
Length = 390
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
++ + D T D G F+ + L E+L G+ ++G++ P+PIQ ++IP+ L GR
Sbjct: 19 SLALPPKDARYKTEDVTATKGNSFEDYFLKRELLMGIYEKGFENPSPIQEESIPIALTGR 78
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
D++A A+ G+GKTA F IP+LEK+ T + + V+AL+L PTRELALQT + KELGK
Sbjct: 79 DILARAKNGTGKTAAFCIPVLEKVDT--SKNEVQALLLVPTRELALQTSQVAKELGKHMA 136
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
++ GG S+ + RL A+ ++VATPGR L
Sbjct: 137 VEVMVSTGGTSLRDDIVRLGATVHVIVATPGRIL 170
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T + KELGK ++ GG S+ + RL A+ ++VATPGR L + + KL
Sbjct: 124 TSQVAKELGKHMAVEVMVSTGGTSLRDDIVRLGATVHVIVATPGRILDLAQKGVAKLDKC 183
Query: 245 QLSLTD 250
+ + D
Sbjct: 184 AVCVMD 189
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
+ +++IP+ L GRD++A A+ G+GKTA F + D
Sbjct: 66 IQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKVD 103
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK V + GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q
Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I++ATPGR L V + L +Q
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|410031078|ref|ZP_11280908.1| DNA/RNA helicase [Marinilabilia sp. AK2]
Length = 453
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++F L ++L+ V + GY PTPIQ K IPL L G DV+ +A+TG+GKTA +++P+L K
Sbjct: 8 FENFKLNKQLLEAVAEAGYSKPTPIQDKAIPLALSGHDVLGIAQTGTGKTAAYVLPLLMK 67
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+K +A RALIL+PTREL +Q + V GKFT L+ CL GG Q +L A
Sbjct: 68 VK-YAQGMHPRALILAPTRELVMQIEEAVVTFGKFTDLRYVCLYGGLGPKTQIEKLQAGV 126
Query: 159 DIVVATPGRFLHIVVEMEL 177
DI+++TPGRF+ + + E+
Sbjct: 127 DIIISTPGRFIDLYKKGEI 145
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFR 325
+ D IPL L G DV+ +A+TG+GKTA ++ +
Sbjct: 32 IQDKAIPLALSGHDVLGIAQTGTGKTAAYVLPLLMK 67
>gi|254443370|ref|ZP_05056846.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
gi|198257678|gb|EDY81986.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
Length = 469
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E++ V +GY P+PIQ K IP +LEGRDV+ A+TG+GKTA F +P+L++
Sbjct: 3 FATLGLRPEIVSAVTAKGYTEPSPIQAKAIPAILEGRDVLGGAQTGTGKTAAFSLPLLQR 62
Query: 99 L-KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
L ++ RALIL+PTRELA Q + + + GK L S C GG +++ Q ++L
Sbjct: 63 LSESEFKNKRPRALILAPTRELAAQVHQSILDYGKGVDLHSACFFGGVNINPQISKLRRG 122
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + E L +I+
Sbjct: 123 LDIIVATPGRLLDLCQRREANLGAIE 148
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 191 ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
+ GK L S C GG +++ Q ++L DI+VATPGR L + E L +I+ + D
Sbjct: 94 DYGKGVDLHSACFFGGVNINPQISKLRRGLDIIVATPGRLLDLCQRREANLGAIETLVLD 153
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNF 331
IP +LEGRDV+ A+TG+GKTA F R F
Sbjct: 31 AIPAILEGRDVLGGAQTGTGKTAAFSLPLLQRLSESEF 68
>gi|392978221|ref|YP_006476809.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392324154|gb|AFM59107.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 450
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE- 97
F S GL E+L+ + ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+LE
Sbjct: 3 FDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62
Query: 98 --KLKTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
K + HA VRALIL+PTRELA Q + V++ ++ ++S + GG S++ Q +L
Sbjct: 63 LVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL +++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDNVE 151
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|296103277|ref|YP_003613423.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295057736|gb|ADF62474.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 450
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE- 97
F S GL E+L+ + ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+LE
Sbjct: 3 FDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62
Query: 98 --KLKTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
K + HA VRALIL+PTRELA Q + V++ ++ ++S + GG S++ Q +L
Sbjct: 63 LVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL +++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDNVE 151
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
Length = 429
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 96/149 (64%), Gaps = 7/149 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++L+ V GY PTPIQ + IPLV+ GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDCFGLSADILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPILQR 62
Query: 99 LKT----HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L H A RAL+L+PTRELA Q + V+ G+ L+ST + GG ++ Q + L
Sbjct: 63 LSAVPTRHRAP---RALVLTPTRELAAQVRESVRSYGRHLPLRSTAVFGGVGINPQISAL 119
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ D+VVATPGR L + + ++LS ++
Sbjct: 120 RSGVDVVVATPGRLLDHLQQRTVELSRVE 148
>gi|294952496|ref|XP_002787325.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239902284|gb|EER19121.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 402
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D G F+ + L E+L G+ ++G++ P+PIQ ++IP L G++++A A+
Sbjct: 54 DTRVKTTDVTATKGNDFEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAK 113
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA FLIPMLEK+ T T G++ L+L PTRELALQT KELGK+ Q
Sbjct: 114 NGTGKTASFLIPMLEKVNTD-ITDGIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTT 172
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHI 171
GG S+ + RL+ + I+V TPGR L +
Sbjct: 173 GGTSLRDDIMRLYNTVHILVGTPGRVLDL 201
>gi|342218233|ref|ZP_08710855.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
gi|341590668|gb|EGS33904.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
Length = 515
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 88/131 (67%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ+ + +L+ + G++ PTPIQ + IP+ L+G+D++ A+TG+GKTA F IP+LEK
Sbjct: 5 FQNLNISTTILQALNTMGFEEPTPIQAEAIPVALQGQDMIGQAQTGTGKTAAFGIPVLEK 64
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+ + TS V+ ++LSPTRELA+Q + + L ++T +Q+ + GG M+ Q RL P
Sbjct: 65 ILASSKTSNVQTIVLSPTRELAMQVAEELNHLAQYTSIQALPIYGGQDMERQLRRLRKHP 124
Query: 159 DIVVATPGRFL 169
I+VATPGR +
Sbjct: 125 QIIVATPGRLI 135
>gi|387889903|ref|YP_006320201.1| ATP-dependent RNA helicase [Escherichia blattae DSM 4481]
gi|414592428|ref|ZP_11442078.1| ATP-dependent RNA helicase RhlE [Escherichia blattae NBRC 105725]
gi|386924736|gb|AFJ47690.1| ATP-dependent RNA helicase [Escherichia blattae DSM 4481]
gi|403196497|dbj|GAB79730.1| ATP-dependent RNA helicase RhlE [Escherichia blattae NBRC 105725]
Length = 455
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++L+ V + GY PTP+QR+ IP+VL GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLNPDILRAVAEAGYSEPTPVQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ + ++S + GG S++ Q +L
Sbjct: 63 LINNQPHAKGRRPVRALILTPTRELAAQVGENVRQYSSYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + + L S++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVSLDSVE 151
>gi|308159948|gb|EFO62462.1| ATP-dependent RNA helicase [Giardia lamblia P15]
Length = 901
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 112/193 (58%), Gaps = 16/193 (8%)
Query: 39 FQSFG-LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F+ G L VLK + GY T IQ+ IP++++G D +++TGSGKTA + IP++
Sbjct: 35 FEKLGKLSPPVLKAIHSLGYSTLTSIQKAAIPVIIDGGDACIVSKTGSGKTAAYSIPLVN 94
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT--KLQSTCLLGGDSMDNQFARLH 155
L H AT+G+R L+++PTREL +Q +++L +FT +L+ L+GG++++ QF L
Sbjct: 95 LLGCHRATTGIRGLVIAPTRELCVQIGGVIRKLSRFTDPELRVCLLVGGEALEKQFTALT 154
Query: 156 ASPDIVVATPGRFLHI---VVEMELKLSSIQYT----------FKFVKELGKFTKLQSTC 202
A+PDI+V TPGR LHI V + +L SI+Y F +++ + L T
Sbjct: 155 ANPDIIVCTPGRILHIHDQVSTFKSQLKSIEYVCFDESDRMFEMNFQQQVNEILDLLPTE 214
Query: 203 LLGGDSMDNQFAR 215
GG + + AR
Sbjct: 215 RTGGHIAETKSAR 227
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 15/89 (16%)
Query: 189 VKELGKFT--KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI---VVEMELKLSS 243
+++L +FT +L+ L+GG++++ QF L A+PDI+V TPGR LHI V + +L S
Sbjct: 124 IRKLSRFTDPELRVCLLVGGEALEKQFTALTANPDIIVCTPGRILHIHDQVSTFKSQLKS 183
Query: 244 IQLSLTD---------FKQDTSRIALDLV 263
I+ D F+Q + I LDL+
Sbjct: 184 IEYVCFDESDRMFEMNFQQQVNEI-LDLL 211
>gi|385208130|ref|ZP_10034998.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385180468|gb|EIF29744.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 520
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++++ V + GY PTPIQ + IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSEQLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A + VRALIL+PTRELA Q + V+ GK+ KL+ST + GG ++ Q
Sbjct: 63 LNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L + DIVVATPGR L + + + LS ++
Sbjct: 123 ALRSGVDIVVATPGRLLDHMQQKTIDLSHLE 153
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMD 210
RL++SP + + R + ++ + + Q + V+ GK+ KL+ST + GG ++
Sbjct: 60 LQRLNSSPAVANGSGKRAVRALILTPTRELAAQVE-ESVRAYGKYLKLKSTVMFGGVGIN 118
Query: 211 NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
Q L + DIVVATPGR L + + + LS +++ + D
Sbjct: 119 PQIGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLD 158
>gi|377577364|ref|ZP_09806346.1| ATP-dependent RNA helicase RhlE [Escherichia hermannii NBRC 105704]
gi|377541102|dbj|GAB51511.1| ATP-dependent RNA helicase RhlE [Escherichia hermannii NBRC 105704]
Length = 488
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ + IP+VL+GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPDILRAVTEQGYNEPTPIQHQAIPVVLQGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 L--KTHAATSG--VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L K + A VRALIL+PTRELA Q + V+E K+ ++S + GG S++ Q +L
Sbjct: 63 LTDKPYQAKGNRPVRALILTPTRELAAQVGENVREYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +KL ++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNAVKLDKVE 151
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V+E K+ ++S + GG S++ Q +L D+++ATPGR L + + +KL +++ +
Sbjct: 95 VREYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDKVEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP+VL+GRD++A A+TG+GKTA F
Sbjct: 27 IQHQAIPVVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|1536826|dbj|BAA11901.1| rhlE [Shewanella violacea]
Length = 206
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 88/135 (65%), Gaps = 2/135 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V +GY+ P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 3 FTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A VRAL+L+PTRELA Q + V+ GK+ L+S + GG + Q ++L
Sbjct: 63 LSRGNRAQAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKLGK 122
Query: 157 SPDIVVATPGRFLHI 171
DI+VATPGR L +
Sbjct: 123 GVDILVATPGRLLDL 137
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
+ IP VLEG+DV+A A+TG+GKTA F RGN
Sbjct: 27 IQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSRGN 67
>gi|347821466|ref|ZP_08874900.1| DEAD/DEAH box helicase domain-containing protein, partial
[Verminephrobacter aporrectodeae subsp. tuberculatae
At4]
Length = 464
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +LK V + GY+ PTPIQ + IP VL+G D++A A+TG+GKTA F +P+L +
Sbjct: 3 FDELNLAPAILKAVHETGYETPTPIQAQAIPAVLQGHDLLAGAQTGTGKTAAFTLPILHR 62
Query: 99 LKTHAAT------SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A G+RAL+L+PTRELA Q + V+E GK+ + ST + GG M+ Q
Sbjct: 63 LSLSTAPRNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDIDSTVVFGGVGMNPQIE 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ DI+VATPGR L + + + LS++Q
Sbjct: 123 RMKRGVDILVATPGRLLDLQQQGFVDLSAVQ 153
>gi|237752663|ref|ZP_04583143.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
gi|229376152|gb|EEO26243.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
Length = 515
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 93/144 (64%), Gaps = 3/144 (2%)
Query: 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
+G GF+SFG VL+G+ + G+ P+PIQ++ IPL+L+G D++A A+TG+GKTA F +P
Sbjct: 12 LGEGFESFGFKKSVLRGIKEAGFSEPSPIQKEAIPLILDGLDIIAQAQTGTGKTAAFGLP 71
Query: 95 MLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
++ LK + + LI++PTRELA+Q + +LGK+ ++++ L GG + Q L
Sbjct: 72 LINNLKNDGS---IEVLIVTPTRELAMQVSDEIFKLGKYNRVKTVSLFGGQPIRRQIELL 128
Query: 155 HASPDIVVATPGRFLHIVVEMELK 178
P +++ATPGR L + LK
Sbjct: 129 EKKPQVIIATPGRLLDHLRNERLK 152
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 215
S ++++ TP R L + V E+ FK LGK+ ++++ L GG + Q
Sbjct: 80 GSIEVLIVTPTRELAMQVSDEI--------FK----LGKYNRVKTVSLFGGQPIRRQIEL 127
Query: 216 LHASPDIVVATPGRFLHIVVEMELK 240
L P +++ATPGR L + LK
Sbjct: 128 LEKKPQVIIATPGRLLDHLRNERLK 152
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IPL+L+G D++A A+TG+GKTA F
Sbjct: 40 IQKEAIPLILDGLDIIAQAQTGTGKTAAF 68
>gi|344171941|emb|CCA84567.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia syzygii R24]
Length = 481
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F +FGL ++L+ + + GY PTPIQ IP+V+ GRDV+ A+TG+GKTA F +P+++
Sbjct: 3 FDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQN 62
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A TS VRALIL+PTRELA Q + V + GK+T L+S + GG M+ Q
Sbjct: 63 LLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQTE 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I+VATPGR L V + + LS ++
Sbjct: 123 QLRRGVEILVATPGRLLDHVQQRSVNLSQVR 153
>gi|294875454|ref|XP_002767329.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239868892|gb|EER00047.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 447
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D G F+ + L E+L G+ ++G++ P+PIQ ++IP L G++++A A+
Sbjct: 57 DTRVKTTDVTATKGNDFEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAK 116
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA FLIPMLEK+ T T G++ L+L PTRELALQT KELGK+ Q
Sbjct: 117 NGTGKTASFLIPMLEKVNTD-ITDGIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTT 175
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHI 171
GG S+ + RL+ + I+V TPGR L +
Sbjct: 176 GGTSLRDDIMRLYNTVHILVGTPGRVLDL 204
>gi|206579391|ref|YP_002239559.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae 342]
gi|290510541|ref|ZP_06549911.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
gi|206568449|gb|ACI10225.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
342]
gi|289777257|gb|EFD85255.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
Length = 451
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP V++GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LIDKEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L S++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVSLDSVE 151
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L DI+VATPGR L + + + L S+++ +
Sbjct: 95 VRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDSVEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP V++GRD++A A+TG+GKTA F R
Sbjct: 17 AEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQRL 63
>gi|294885690|ref|XP_002771414.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239874995|gb|EER03230.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 453
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGK 87
T D G F+ + L E+L G+ ++G++ P+PIQ ++IP L G++++A A+ G+GK
Sbjct: 68 TTDVTATKGNDFEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGK 127
Query: 88 TACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
TA FLIPMLEK+ T T G++ L+L PTRELALQT KELGK+ Q GG S+
Sbjct: 128 TASFLIPMLEKVNTD-ITDGIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSL 186
Query: 148 DNQFARLHASPDIVVATPGRFLHI 171
+ RL+ + I+V TPGR L +
Sbjct: 187 RDDIMRLYNTVHILVGTPGRVLDL 210
>gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
Length = 451
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP V++GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LIDKEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L S++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVSLDSVE 151
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L DI+VATPGR L + + + L S+++ +
Sbjct: 95 VRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDSVEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP V++GRD++A A+TG+GKTA F R
Sbjct: 17 AEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQRL 63
>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 513
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ FGL E+L+ + +GY PTPIQ + IP+VL+G DV+ A+TG+GKTA F +P+++
Sbjct: 38 FEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQL 97
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L HA +S VRALIL+PTRELA Q VK + T L+S + GG M Q A
Sbjct: 98 LMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQTA 157
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L + +IV+ATPGR L + + L LS Q
Sbjct: 158 ALRSGVEIVIATPGRLLDHIQQKTLNLSQTQ 188
>gi|410637091|ref|ZP_11347679.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
gi|410143470|dbj|GAC14884.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
Length = 412
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GLG + ++++GY PTPIQ + IP +L+ +DV+A A+TG+GKTA F++P+LEK
Sbjct: 3 FNSLGLGQNIANALIEKGYNEPTPIQAQAIPAILDNQDVMAAAQTGTGKTAGFVLPILEK 62
Query: 99 LKTHAATSG--VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L H G V AL+L+PTRELA Q + VK K ++ T + GG S++ Q L
Sbjct: 63 LSHHPRPKGNQVNALVLTPTRELAAQISENVKAYSKNLNIRHTVVFGGVSINPQMMALRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + +K ++Q
Sbjct: 123 GVDILVATPGRLLDLYNQKAVKFDNLQ 149
>gi|420246760|ref|ZP_14750191.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
gi|398073382|gb|EJL64557.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
Length = 411
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q A
Sbjct: 73 LLPLASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTSLRSAVVFGGVDMNPQSA 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L V + L +Q
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|336310213|ref|ZP_08565185.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
gi|335865943|gb|EGM70934.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
Length = 470
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VL+G+DV+A A+TG+GKTA F +P+LE
Sbjct: 3 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K A +G VR L+L+PTRELA Q + V+ GK+ L+S + GG ++ Q A+L
Sbjct: 63 LSKGQRAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRH 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K + ++
Sbjct: 123 GVDVLVATPGRLMDLYNQKAVKFNQLE 149
>gi|24375277|ref|NP_719320.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
gi|24350080|gb|AAN56764.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
Length = 535
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL + K V ++GY P+PIQ + IP VL G+DV+A A+TG+GKTA F +P+LE
Sbjct: 3 FSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K H A SG RAL+L+PTRELA Q + V+ GK+ L+S + GG ++ Q +L
Sbjct: 63 LAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRH 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L +V + +K + ++
Sbjct: 123 GVDVLVATPGRLLDLVQQNAVKFNQLE 149
>gi|294880791|ref|XP_002769153.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239872304|gb|EER01871.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 449
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGK 87
T D G F+ + L E+L G+ ++G++ P+PIQ ++IP L G++++A A+ G+GK
Sbjct: 64 TTDVTATKGNDFEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGK 123
Query: 88 TACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
TA FLIPMLEK+ T T G++ L+L PTRELALQT KELGK+ Q GG S+
Sbjct: 124 TASFLIPMLEKVNTD-ITDGIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSL 182
Query: 148 DNQFARLHASPDIVVATPGRFLHI 171
+ RL+ + I+V TPGR L +
Sbjct: 183 RDDIMRLYNTVHILVGTPGRVLDL 206
>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
Length = 426
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+L+ V +GY PTPIQ + IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 4 FNDLGLSAELLRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPVLQR 63
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L +SG VRAL+L+PTRELA Q V + GK+ L+S + GG ++ Q + L
Sbjct: 64 LSDTPVSSGRRPVRALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQISMLR 123
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L V + + LS ++
Sbjct: 124 KGVDILVATPGRLLDHVSQKTVDLSKVE 151
>gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
Length = 449
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQSF L +LKG+ G+ T +Q++TIP L+ +D++ ARTGSGKTA F++PML+
Sbjct: 2 FQSFSLDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQH 61
Query: 99 LKTHAA-TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
L TH A SG RALIL PTRELA Q K + L KFT +QS + GG Q A +
Sbjct: 62 LLTHKAPNSGTRALILVPTRELAKQLLKQCQALAKFTGIQSGMITGGQEFKFQAALFRKN 121
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQY 184
P+I++ATPGR + + + + + ++Y
Sbjct: 122 PEIIIATPGRLIDHLKQKKDLMEDVEY 148
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 186 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 231
K + L KFT +QS + GG Q A +P+I++ATPGR +
Sbjct: 88 LKQCQALAKFTGIQSGMITGGQEFKFQAALFRKNPEIIIATPGRLI 133
>gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 583
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 105/166 (63%), Gaps = 2/166 (1%)
Query: 19 ISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVV 78
++++DD G + D + F+ GLG E+LK + + GY PTPIQ + IP+VL GRDV+
Sbjct: 21 MTTHDDIGRS-DGPETATTTFEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVL 79
Query: 79 AMARTGSGKTACFLIPMLEKLKTHAATSGV-RALILSPTRELALQTFKFVKELGKFTKLQ 137
A+TG+GKTA F +PM+E L A + + R+LIL+PTRELA Q + + GK+ L+
Sbjct: 80 GCAQTGTGKTASFTLPMIEILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLK 139
Query: 138 STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
++GG+SM +Q A L D+++ATPGR L + + L+ ++
Sbjct: 140 KALIIGGESMSDQVALLDRGVDVLIATPGRLLDMFERGRILLNDVK 185
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 193 GKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
GK+ L+ ++GG+SM +Q A L D+++ATPGR L + + L+ +++ + D
Sbjct: 133 GKYHPLKKALIIGGESMSDQVALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVID 190
>gi|159110427|ref|XP_001705473.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
gi|157433558|gb|EDO77799.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
Length = 900
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 99/152 (65%), Gaps = 6/152 (3%)
Query: 39 FQSFG-LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F+ G L VLK + GY T IQ+ IP++++G D +++TGSGKTA + IP++
Sbjct: 35 FEKLGKLSPPVLKAIHSLGYSTLTSIQKAAIPVIIDGGDACVVSKTGSGKTAAYSIPLVN 94
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT--KLQSTCLLGGDSMDNQFARLH 155
L H AT+G+R L+++PTREL +Q +++L +FT +L+ L+GG++++ QF L
Sbjct: 95 LLGCHRATTGIRGLVIAPTRELCVQIGGVIRKLSRFTDPELRVCLLVGGEALEKQFTALT 154
Query: 156 ASPDIVVATPGRFLHI---VVEMELKLSSIQY 184
A+PDI+V TPGR LHI V + +L SI+Y
Sbjct: 155 ANPDIIVCTPGRILHIHDQVSTFKSQLKSIEY 186
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 15/89 (16%)
Query: 189 VKELGKFT--KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI---VVEMELKLSS 243
+++L +FT +L+ L+GG++++ QF L A+PDI+V TPGR LHI V + +L S
Sbjct: 124 IRKLSRFTDPELRVCLLVGGEALEKQFTALTANPDIIVCTPGRILHIHDQVSTFKSQLKS 183
Query: 244 IQLSLTD---------FKQDTSRIALDLV 263
I+ D F+Q + I LDL+
Sbjct: 184 IEYVCFDESDRMFEMNFQQQVNEI-LDLL 211
>gi|344199440|ref|YP_004783766.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
ferrivorans SS3]
gi|343774884|gb|AEM47440.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrivorans SS3]
Length = 419
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 95/150 (63%), Gaps = 5/150 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL + + +RGY PTPIQ + IP+V+ G D++A A+TG+GKTA F +P+L K
Sbjct: 4 FESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILHK 63
Query: 99 LKTHAAT-----SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L A T S VRALIL PTRELA Q + V+ G++ L+S L+GG ++ Q +
Sbjct: 64 LSATADTAARGPSSVRALILVPTRELAAQVEESVQLYGRYLSLRSLVLIGGVKINPQMQK 123
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L S D++VATPGR L + + + LS ++
Sbjct: 124 LRRSVDVLVATPGRLLDHIQQRSVDLSRVE 153
>gi|433659531|ref|YP_007300390.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus BB22OP]
gi|432510918|gb|AGB11735.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus BB22OP]
Length = 522
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK + ++GY P+PIQ K IP +LEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L + VRALIL+PTRELA Q + V G+ L S + GG ++ Q RL
Sbjct: 62 RLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K ++
Sbjct: 122 KGADVLVATPGRLMDLYNQNAVKFDQLE 149
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP +LEG+DV+A A+TG+GKTA F R G
Sbjct: 31 AIPAILEGKDVMAAAQTGTGKTAGFTLPILERLSNG 66
>gi|187925284|ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187716478|gb|ACD17702.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 515
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +++ V + GY PTPIQ + IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKT-HAATSG-----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L T A T+G VRALIL+PTRELA Q + V+ GK+ KL+ST + GG ++ Q
Sbjct: 63 LNTMPAVTTGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L + DIVVATPGR L + + + LS ++
Sbjct: 123 ALRSGVDIVVATPGRLLDHMQQKTIDLSHLE 153
>gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
2210633]
gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ3810]
gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
K5030]
gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AN-5034]
gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
Peru-466]
gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ4037]
gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
2210633]
gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ3810]
gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
Peru-466]
gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AN-5034]
gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ4037]
gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
K5030]
Length = 522
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK + ++GY P+PIQ K IP +LEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L + VRALIL+PTRELA Q + V G+ L S + GG ++ Q RL
Sbjct: 62 RLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K ++
Sbjct: 122 KGADVLVATPGRLMDLYNQNAVKFDQLE 149
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP +LEG+DV+A A+TG+GKTA F R G
Sbjct: 31 AIPAILEGKDVMAAAQTGTGKTAGFTLPILERLSNG 66
>gi|123504635|ref|XP_001328793.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121911741|gb|EAY16570.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 515
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 91/137 (66%), Gaps = 3/137 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F+ GL +++ + K ++IPTP+Q KTIP+ L+GRDV A A TGSGKTA FLIP +E
Sbjct: 17 SFEELGLSHSIIRALHKMNFEIPTPVQNKTIPIALQGRDVCASAVTGSGKTAAFLIPTVE 76
Query: 98 K-LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS-MDNQFARLH 155
+ L++ + + RA+ILSPTRELA QT+ + ++ +FT L + L GG S + + RL
Sbjct: 77 RLLRSKSTEAQTRAVILSPTRELAAQTYSVLSQIIQFTPLTALLLTGGSSNVKEEEERLL 136
Query: 156 ASPDIVVATPGRFL-HI 171
PD +V TPGR + HI
Sbjct: 137 EYPDFLVCTPGRIIDHI 153
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
V + TIP+ L+GRDV A A TGSGKTA FL R R
Sbjct: 42 VQNKTIPIALQGRDVCASAVTGSGKTAAFLIPTVERLLRS 81
>gi|417322060|ref|ZP_12108594.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
Length = 522
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK + ++GY P+PIQ K IP +LEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L + VRALIL+PTRELA Q + V G+ L S + GG ++ Q RL
Sbjct: 62 RLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K ++
Sbjct: 122 KGADVLVATPGRLMDLYNQNAVKFDQLE 149
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP +LEG+DV+A A+TG+GKTA F R G
Sbjct: 31 AIPAILEGKDVMAAAQTGTGKTAGFTLPILERLSNG 66
>gi|397167613|ref|ZP_10491055.1| ATP-dependent RNA helicase rhlE [Enterobacter radicincitans DSM
16656]
gi|396090971|gb|EJI88539.1| ATP-dependent RNA helicase rhlE [Enterobacter radicincitans DSM
16656]
Length = 481
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL E+L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDALGLNPEILRAVAEQGYVQPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ ++ ++S + GG S++ Q +L
Sbjct: 63 LVQKEPHAKGRRPVRALILTPTRELAAQIGENVRDYSQYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + LKL S++
Sbjct: 123 RGGVDVLIATPGRLLDLEHQNALKLDSVE 151
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ ++ ++S + GG S++ Q +L D+++ATPGR L + + LKL S+++ +
Sbjct: 95 VRDYSQYLNIRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNALKLDSVEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YVQ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVQPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|294885688|ref|XP_002771413.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239874994|gb|EER03229.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 431
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D G F+ + L E+L G+ ++G++ P+PIQ ++IP L G++++A A+
Sbjct: 54 DTRVKTTDVTATKGNDFEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAK 113
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA FLIPMLEK+ T T G++ L+L PTRELALQT KELGK+ Q
Sbjct: 114 NGTGKTASFLIPMLEKVNTD-ITDGIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTT 172
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHI 171
GG S+ + RL+ + I+V TPGR L +
Sbjct: 173 GGTSLRDDIMRLYNTVHILVGTPGRVLDL 201
>gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 408
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 95/149 (63%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ + IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQSQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKT-----HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T H A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTFYAEHHHAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS +
Sbjct: 123 LRRGVDIVVATPGRLLDHMQQKTIDLSQL 151
>gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 482
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++LK V +GY P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 3 FASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A VRAL+L+PTRELA Q + V+ GK L+S + GG + Q ++L
Sbjct: 63 LSKGNKAPAKQVRALVLTPTRELAAQVGESVEIYGKNLPLKSAVIFGGVGIGPQISKLSR 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + S ++
Sbjct: 123 GVDILVATPGRLLDLYNQRAVNFSQLE 149
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP VLEG+DV+A A+TG+GKTA F +GN
Sbjct: 31 AIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSKGN 67
>gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
Length = 517
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK + ++GY P+PIQ K IP +LEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L + VRALIL+PTRELA Q + V G+ L S + GG ++ Q RL
Sbjct: 62 RLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K ++
Sbjct: 122 KGADVLVATPGRLMDLYNQNAVKFDQLE 149
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP +LEG+DV+A A+TG+GKTA F R G
Sbjct: 31 AIPAILEGKDVMAAAQTGTGKTAGFTLPILERLSNG 66
>gi|452845761|gb|EME47694.1| hypothetical protein DOTSEDRAFT_77927 [Dothistroma septosporum
NZE10]
Length = 1056
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Query: 13 EDPTVTISSNDD-------NGNTGDKKKKMGG----GFQSFGLGFEVLKGVLKRGYKIPT 61
E+P + DD N D + K G F S L +LKG+ G+ PT
Sbjct: 496 EEPVSASEAGDDAAEREKANAFFADGESKKTGPTATAFHSMNLSRPILKGLASVGFDKPT 555
Query: 62 PIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA-TSGVRALILSPTRELA 120
PIQ K +P+ LEG+D+V A TGSGKTA FLIP+LE+L TS R IL PTRELA
Sbjct: 556 PIQMKAVPVALEGKDLVGGAVTGSGKTAAFLIPILERLLYRPKRTSMTRVAILMPTRELA 615
Query: 121 LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171
LQ F K+L FT + +GG S+ Q L PDIV+ATPGRF+ +
Sbjct: 616 LQCFNVAKKLSAFTDISVAMAVGGLSIKEQDKELKMRPDIVIATPGRFIDL 666
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 186 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 233
F K+L FT + +GG S+ Q L PDIV+ATPGRF+ +
Sbjct: 619 FNVAKKLSAFTDISVAMAVGGLSIKEQDKELKMRPDIVIATPGRFIDL 666
>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 418
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 94/150 (62%), Gaps = 5/150 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL + + +RGY PTPIQ + IP+V+ G D++A A+TG+GKTA F +P+L K
Sbjct: 4 FESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILHK 63
Query: 99 LKTHA-----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L A A S VRALIL PTRELA Q V+ G++ L+S L+GG ++ Q +
Sbjct: 64 LAVTAGSASRAPSSVRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQMQK 123
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L S DI+VATPGR L + + + LS ++
Sbjct: 124 LRRSVDILVATPGRLLDHIQQRSVDLSHVE 153
>gi|377555812|ref|ZP_09785540.1| ATP-dependent RNA helicase RhlE [endosymbiont of Bathymodiolus sp.]
Length = 430
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF GL +L+ V K+GY P+PIQ + IP+VL+G+D++A A+TG+GKTA F +P+L+
Sbjct: 2 GFSKLGLSDSILEAVTKKGYDKPSPIQEQAIPVVLDGKDIMAAAQTGTGKTAGFTLPILQ 61
Query: 98 KLK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L T A ++ VR LIL+PTRELA Q V + GK L+ST + GG ++ Q +L
Sbjct: 62 ILSKGTPAKSNQVRTLILTPTRELAAQVNASVIDYGKQLPLKSTVVFGGVKINPQMQKLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + +K ++
Sbjct: 122 GGVDILVATPGRLLDLYSQNAVKFDQLE 149
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+ + IP+VL+G+D++A A+TG+GKTA F +G
Sbjct: 27 IQEQAIPVVLDGKDIMAAAQTGTGKTAGFTLPILQILSKG 66
>gi|83282276|ref|XP_729699.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoelii 17XNL]
gi|23488233|gb|EAA21264.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoelii]
Length = 477
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 91/152 (59%), Gaps = 5/152 (3%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D K G F+ + L E+L G+ ++GY+ P+PIQ ++IP+ L G++++A A+
Sbjct: 83 DPRYKTEDVTKTKGNEFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAK 142
Query: 83 TGSGKTACFLIPMLEKLKTH-----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQ 137
G+GKTA F IP+LEK TH T +LIL PTRELALQT +KELGK K+Q
Sbjct: 143 NGTGKTAAFAIPLLEKCNTHKNFIQGKTIQKISLILVPTRELALQTSAMIKELGKHMKIQ 202
Query: 138 STCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
GG S+ RL+ + I+ TPGR L
Sbjct: 203 CMVTTGGTSLREDIMRLYNAVHILCGTPGRIL 234
>gi|390570352|ref|ZP_10250619.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389937684|gb|EIM99545.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 486
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q A
Sbjct: 73 LLPLASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTSLRSAVVFGGVDMNPQSA 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L V + L +Q
Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|238897524|ref|YP_002923203.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465281|gb|ACQ67055.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 414
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V + Y PTPIQR+ IPL+L RD++A A+TG+GKTA F +P+L+
Sbjct: 3 FHSLGLNADILRAVSEHNYSAPTPIQRQAIPLILAKRDLMASAQTGTGKTAAFTLPLLQL 62
Query: 99 LKTHAA----TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + A +RALIL+PTRELA Q + V + ++ +L+S + GG S++ Q +L
Sbjct: 63 LSQNTALVKGRRQIRALILTPTRELAAQIAQNVSDYSQYLQLRSLAVFGGVSINPQTMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI++ATPGR L + + L LS I+
Sbjct: 123 RGGVDILIATPGRLLDLEHQNALALSQIE 151
>gi|404448789|ref|ZP_11013781.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403765513|gb|EJZ26391.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 398
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F + L +LK V + GY PTPIQ+K IPLVL+G D++ A+TG+GKTA F IP+++
Sbjct: 2 AFNNLPLIEPILKAVAQEGYTTPTPIQQKAIPLVLDGNDLLGCAQTGTGKTAAFSIPIIQ 61
Query: 98 KLKTHAAT-SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T + G++ALIL+PTRELA+Q + + GKFTK++ T + GG S +Q L
Sbjct: 62 LLSTQKQSRPGIKALILTPTRELAIQINESLASYGKFTKIRHTVIFGGVSQLHQTNALKR 121
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L ++ + + L ++
Sbjct: 122 GVDILVATPGRLLDLINQKYIDLRHLE 148
>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 480
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 97/149 (65%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTH-----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T+ A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS++
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQKTIDLSNL 151
>gi|408672779|ref|YP_006872527.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
gi|387854403|gb|AFK02500.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
Length = 458
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L ++L V GY PTPIQ KTIPL L+G DV+ +A+TG+GKTA +L+P+L K
Sbjct: 8 FEQFELNRQLLNAVADAGYTTPTPIQEKTIPLTLKGHDVLGIAQTGTGKTAAYLLPILMK 67
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+K +A R LI +PTREL +Q K V EL K+T L+ L GG Q + A
Sbjct: 68 VK-YAQGKLPRCLIFAPTRELVMQIDKAVGELAKYTDLRHVALYGGLGPKTQIEAVQAGV 126
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGRF+ + + E+ + I+
Sbjct: 127 DIIVATPGRFMDLYLRGEIGVKEIK 151
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFR 325
+ + TIPL L+G DV+ +A+TG+GKTA +L +
Sbjct: 32 IQEKTIPLTLKGHDVLGIAQTGTGKTAAYLLPILMK 67
>gi|300722435|ref|YP_003711723.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus nematophila ATCC 19061]
gi|297628940|emb|CBJ89523.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus nematophila ATCC 19061]
Length = 498
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++L+ V ++GY PTPIQ++ IP+VL G+D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLKADILRAVEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPILQR 62
Query: 99 L-KTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L ++ G VRALIL+PTRELA Q + V K+ KL+S + GG S++ Q +L
Sbjct: 63 LSESPTQVKGRRPVRALILTPTRELAAQVGENVHNYSKYLKLRSFVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS ++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSHVE 151
>gi|433544706|ref|ZP_20501082.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432183978|gb|ELK41503.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 530
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 90/135 (66%), Gaps = 2/135 (1%)
Query: 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
M F SFG E+++G+ YK PTPIQ + IPL+LEG+DV+ A+TG+GKTA F++P
Sbjct: 1 MAKSFASFGFRPELMQGIQDLYYKEPTPIQEEAIPLILEGKDVIGQAQTGTGKTAAFMLP 60
Query: 95 MLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
+L +L A ++ALIL+PTREL++Q K V++LGK + L GG +D Q ++L
Sbjct: 61 ILNRL--DAGKRDIQALILTPTRELSIQIAKEVEKLGKHLDVNVLSLHGGTDIDRQLSKL 118
Query: 155 HASPDIVVATPGRFL 169
++ IVV TPGR L
Sbjct: 119 KSTVHIVVGTPGRVL 133
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333
+ ++ IPL+LEG+DV+ A+TG+GKTA F+ R D G +I
Sbjct: 29 IQEEAIPLILEGKDVIGQAQTGTGKTAAFMLPILNRLDAGKRDI 72
>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 480
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 97/149 (65%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTH-----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T+ A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS++
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQKTIDLSNL 151
>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 472
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 97/149 (65%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTH-----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T+ A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS++
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQKTIDLSNL 151
>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 479
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 97/149 (65%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTH-----AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T+ A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS++
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQKTIDLSNL 151
>gi|399046383|ref|ZP_10738806.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398055540|gb|EJL47607.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 492
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 90/135 (66%), Gaps = 2/135 (1%)
Query: 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
M F SFG E+++G+ YK PTPIQ + IPL+LEG+DV+ A+TG+GKTA F++P
Sbjct: 1 MAKSFASFGFRPELMQGIQDLYYKEPTPIQEEAIPLILEGKDVIGQAQTGTGKTAAFMLP 60
Query: 95 MLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
+L +L A ++ALIL+PTREL++Q K V++LGK + L GG +D Q ++L
Sbjct: 61 ILNRL--DAGKRDIQALILTPTRELSIQIAKEVEKLGKHLDVNVLSLHGGTDIDRQLSKL 118
Query: 155 HASPDIVVATPGRFL 169
++ IVV TPGR L
Sbjct: 119 KSTVHIVVGTPGRVL 133
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333
+ ++ IPL+LEG+DV+ A+TG+GKTA F+ R D G +I
Sbjct: 29 IQEEAIPLILEGKDVIGQAQTGTGKTAAFMLPILNRLDAGKRDI 72
>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 549
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL + K V ++GY P+PIQ + IP VL G+DV+A A+TG+GKTA F +P+LE
Sbjct: 3 FSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 99 L-KTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L K + A +G +RAL+L+PTRELA Q + V+ GK+ L+S + GG ++ Q +L
Sbjct: 63 LSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRH 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L +V + +K + ++
Sbjct: 123 GVDVLVATPGRLLDLVQQNVVKFNQLE 149
>gi|114777228|ref|ZP_01452239.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal
[Mariprofundus ferrooxydans PV-1]
gi|114552373|gb|EAU54856.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal
[Mariprofundus ferrooxydans PV-1]
Length = 426
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 98/150 (65%), Gaps = 4/150 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL ++L+ V +GY+ PTP+Q +IP++L G DV+A A+TG+GKTA F +PML+
Sbjct: 3 FEKLGLSADLLRAVADQGYETPTPVQANSIPVILAGHDVLAGAQTGTGKTAGFTLPMLQL 62
Query: 99 L-KTHAATS---GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
+ KTH S +RAL+L+PTRELA Q + + GK+ L+ST + GG ++ Q +L
Sbjct: 63 MHKTHPERSRNHPIRALVLTPTRELAAQVGESIATYGKYLPLRSTVVFGGVGINPQIQKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI+VATPGR L ++ + + L +++
Sbjct: 123 QRGVDILVATPGRLLDLIGQGKANLGHVEF 152
>gi|6473828|dbj|BAA87186.1| Hypothetical nuclear protein [Schizosaccharomyces pombe]
Length = 93
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 72/92 (78%)
Query: 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTH 102
GL +L+ + K+G+K PTPIQRKTIPL+LEGRDVV MARTGSGKTA F+IPM+E LK+
Sbjct: 1 GLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKST 60
Query: 103 AATSGVRALILSPTRELALQTFKFVKELGKFT 134
A S RALILSP RELALQT K VK+ K T
Sbjct: 61 LANSNTRALILSPNRELALQTVKVVKDFSKGT 92
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 24/27 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLF 320
TIPL+LEGRDVV MARTGSGKTA F+
Sbjct: 25 TIPLLLEGRDVVGMARTGSGKTAAFVI 51
>gi|377820266|ref|YP_004976637.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935101|gb|AET88660.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 496
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK V + GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 19 FDQFGLAADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 78
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A TS VRAL+L+PTRELA Q V+ K T L+ST + GG M+ Q
Sbjct: 79 LLPSANTSASPARHPVRALMLTPTRELADQVAANVQTYSKHTPLRSTVVFGGVDMNPQSD 138
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L V + + L +Q
Sbjct: 139 ALRRGVEILIATPGRLLDHVQQKTVNLGQVQ 169
>gi|392396591|ref|YP_006433192.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527669|gb|AFM03399.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 437
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L ++L + + GY+ P+PIQ + IPL+L G DV+ +A+TG+GKTA F++P+L K
Sbjct: 3 FEDFKLNRQLLNAIEEAGYEKPSPIQEQAIPLLLAGHDVIGVAQTGTGKTAAFMLPLLMK 62
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD-SMDNQFARLHAS 157
LK +A RALIL+PTREL +Q + + L K+T L++ L GG S+ Q ++
Sbjct: 63 LK-YAQGENPRALILAPTRELVIQIHEHFEMLSKYTDLRAVALYGGSGSIKRQLEQVREG 121
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L I EL L I+
Sbjct: 122 MDLIIATPGRLLDIYERNELNLRQIK 147
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ + IPL+L G DV+ +A+TG+GKTA F+ +
Sbjct: 27 IQEQAIPLLLAGHDVIGVAQTGTGKTAAFMLPLLMKL 63
>gi|345863156|ref|ZP_08815368.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345125617|gb|EGW55485.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 485
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 100/148 (67%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL +L+ V ++GY PTP+Q++ IP++L GRDV+A A+TG+GKTA F +P+LE
Sbjct: 3 FEKLGLSAPILRAVSEQGYTQPTPVQQQAIPVILSGRDVMAGAQTGTGKTAGFTLPLLEL 62
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L+ HA G VRAL+L+PTRELA Q + V++ GK+ L+ST + GG ++ Q +L
Sbjct: 63 LEEHAQGKGRRPVRALVLTPTRELAAQVGESVEQYGKYLPLKSTVIFGGVKINPQIEKLR 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L V + L LS I+
Sbjct: 123 HGVDILVATPGRLLDHVSQKTLDLSHIE 150
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 283 AKKKYVQ---VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+++ Y Q V IP++L GRDV+A A+TG+GKTA F
Sbjct: 17 SEQGYTQPTPVQQQAIPVILSGRDVMAGAQTGTGKTAGF 55
>gi|209876956|ref|XP_002139920.1| ATP-dependent RNA helicase [Cryptosporidium muris RN66]
gi|209555526|gb|EEA05571.1| ATP-dependent RNA helicase, putative [Cryptosporidium muris RN66]
Length = 406
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 104/173 (60%), Gaps = 5/173 (2%)
Query: 17 VTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD 76
+ I D T D K G F+ + L E+L G+ ++G++ P+PIQ ++IP+ L G+D
Sbjct: 13 LVIPPKDPRFKTDDVTKTKGSDFEDYFLKRELLMGIYEKGFERPSPIQEESIPVALAGKD 72
Query: 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136
++A A+ G+GKTA F+IP+LEK+ T T ++ LIL PTRELALQT VK+LGK +
Sbjct: 73 ILARAKNGTGKTAAFVIPLLEKINTKKNT--IQGLILVPTRELALQTSSIVKQLGKHISV 130
Query: 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFV 189
Q GG S+ + RL+ ++V TPGR L + + K+ ++ F F+
Sbjct: 131 QCMVSTGGTSLRDDILRLNNPVHVLVGTPGRVLDLANK---KVCNLSGCFMFI 180
Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 174 EMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 233
E+ L+ SSI VK+LGK +Q GG S+ + RL+ ++V TPGR L +
Sbjct: 112 ELALQTSSI------VKQLGKHISVQCMVSTGGTSLRDDILRLNNPVHVLVGTPGRVLDL 165
Query: 234 VVEMELKLSSIQLSLTD 250
+ LS + + D
Sbjct: 166 ANKKVCNLSGCFMFIMD 182
>gi|421556917|ref|ZP_16002826.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
gi|402335602|gb|EJU70866.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
Length = 457
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 94/155 (60%), Gaps = 6/155 (3%)
Query: 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
M F S GLG E++ + +GY+ PTPIQ IP L G D++A A+TG+GKTA F++P
Sbjct: 1 MSNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLP 60
Query: 95 MLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD 148
LE+LK HA S VR L+L+PTRELA Q + V+ K L+ T L GG +MD
Sbjct: 61 SLERLKRHATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMD 120
Query: 149 NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
Q A L A +IVVAT GR L V + + L+ ++
Sbjct: 121 KQTADLRAGCEIVVATVGRLLDHVKQKNISLNKVE 155
>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 513
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 25 FTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEL 84
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A VRAL+L+PTRELA Q + V+ GK L+S + GG + Q ++L
Sbjct: 85 LTRGNRAQAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVVFGGVGIGPQISKLGK 144
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + L + ++
Sbjct: 145 GVDILVATPGRLLDLFNQRALNFNQLE 171
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
IP VLEG+DV+A A+TG+GKTA F RGN
Sbjct: 53 AIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLTRGN 89
>gi|281211648|gb|EFA85810.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 1269
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 2/154 (1%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
++ + D+ T D G F L ++L+G+ ++GY P+PIQ K IP+ L G+
Sbjct: 21 SLVLPPKDERKQTEDVTATEGNEFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALTGK 80
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
D++A A+ G+GKTA FLIP LE KT ++ LIL PTRELALQT + KELGK+
Sbjct: 81 DIMARAKNGTGKTASFLIPALE--KTDPTKDYIQVLILVPTRELALQTSQVCKELGKYMN 138
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
++ GG S+ + RL+ + I+VATPGR L
Sbjct: 139 VKVMASTGGTSLKDDIMRLYETVHILVATPGRVL 172
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 264 GDSTEMIHKQRQSVRKWDPAKKKYVQ---VTDDTIPLVLEGRDVVAMARTGSGKTACFL 319
G+ + +H +R +R +K YV+ + + IP+ L G+D++A A+ G+GKTA FL
Sbjct: 41 GNEFDDLHLKRDLLR--GIFEKGYVKPSPIQEKAIPIALTGKDIMARAKNGTGKTASFL 97
>gi|420436804|ref|ZP_14935796.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-28]
gi|393054544|gb|EJB55472.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-28]
Length = 492
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 87/132 (65%), Gaps = 3/132 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F FGL VLK V + G+ P+PIQ K IP VL+GRDV+A A+TG+GKTA F +P++
Sbjct: 21 SFNDFGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
LK + + AL+++PTRELA+Q + +LGK T+ ++ C+ GG S+ Q + +
Sbjct: 81 NLKNNHT---IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137
Query: 158 PDIVVATPGRFL 169
P +++ATPGR L
Sbjct: 138 PQVMIATPGRLL 149
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP VL+GRDV+A A+TG+GKTA F
Sbjct: 46 IQEKAIPAVLQGRDVIAQAQTGTGKTAAF 74
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 218
+ +V TP R L + + E+ FK LGK T+ ++ C+ GG S+ Q +
Sbjct: 89 EALVITPTRELAMQISDEI--------FK----LGKHTRTKTVCVYGGQSVKKQCEFIKK 136
Query: 219 SPDIVVATPGRFL 231
+P +++ATPGR L
Sbjct: 137 NPQVMIATPGRLL 149
>gi|218780301|ref|YP_002431619.1| DEAD/DEAH box helicase [Desulfatibacillum alkenivorans AK-01]
gi|218761685|gb|ACL04151.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
alkenivorans AK-01]
Length = 430
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F +FG V G+ GY PTPIQ K IP V++GRD++ +A+TG+GKTA F++P+L +
Sbjct: 3 FTNFGFHKHVAAGISAAGYSTPTPIQEKAIPQVMQGRDLMGLAQTGTGKTAAFVLPILHR 62
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L +GVRALI++PTRELA QT + + LG T L+S + GG ++ Q +L S
Sbjct: 63 L-MQKPGNGVRALIIAPTRELAEQTHEAINTLGAHTNLKSVSVYGGVNLQRQVKQLKQS- 120
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
DIVVA PGR L + + LS ++
Sbjct: 121 DIVVACPGRLLDHIGRKNVDLSRVE 145
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 183 QYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 242
+ T + + LG T L+S + GG ++ Q +L S DIVVA PGR L + + LS
Sbjct: 84 EQTHEAINTLGAHTNLKSVSVYGGVNLQRQVKQLKQS-DIVVACPGRLLDHIGRKNVDLS 142
Query: 243 SIQLSLTD 250
+++ + D
Sbjct: 143 RVEMLVLD 150
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ + IP V++GRD++ +A+TG+GKTA F+ R
Sbjct: 27 IQEKAIPQVMQGRDLMGLAQTGTGKTAAFVLPILHRL 63
>gi|349803309|gb|AEQ17127.1| putative dead (asp-glu-ala-asp) box polypeptide 54 [Pipa carvalhoi]
Length = 114
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 69/83 (83%)
Query: 102 HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIV 161
H+A +GVR LILSPTRELALQT KF KELGKFT L++ +LGGD M++QFA LH +PDI+
Sbjct: 1 HSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDII 60
Query: 162 VATPGRFLHIVVEMELKLSSIQY 184
+ATPGR +HI VEM LKL S++Y
Sbjct: 61 IATPGRLMHIAVEMNLKLHSVEY 83
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 51/66 (77%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
T KF KELGKFT L++ +LGGD M++QFA LH +PDI++ATPGR +HI VEM LKL S+
Sbjct: 22 TLKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLMHIAVEMNLKLHSV 81
Query: 245 QLSLTD 250
+ + D
Sbjct: 82 EYIVFD 87
>gi|409990969|ref|ZP_11274276.1| DEAD/DEAH box helicase [Arthrospira platensis str. Paraca]
gi|409938168|gb|EKN79525.1| DEAD/DEAH box helicase [Arthrospira platensis str. Paraca]
Length = 465
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 94/150 (62%), Gaps = 2/150 (1%)
Query: 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
M F+S G+ + + + G+ PTP+Q + IP +L GRDVV MA+TG+GKTA F +P
Sbjct: 1 MSQSFESLGISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLP 60
Query: 95 MLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
+LE++ HAA G++AL+L+PTRELA+Q + ++ L + GG S+D Q RL
Sbjct: 61 ILEQIDVHAA--GIQALVLTPTRELAMQVKEAIRTFSDDNALYVLTVYGGQSIDRQIQRL 118
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+VV TPGR L ++ ELKL S+++
Sbjct: 119 RRGVQVVVGTPGRILDLLNRGELKLDSLRW 148
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
IP +L GRDVV MA+TG+GKTA F + D
Sbjct: 33 AIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQID 66
>gi|320583039|gb|EFW97255.1| Cytoplasmic DExD/H-box helicase [Ogataea parapolymorpha DL-1]
Length = 451
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
+ + D T D G F+SF L E+L G+ + G++ P+PIQ + IP+ L GR
Sbjct: 8 NLNLPKKDGRPQTDDVLATKGNTFESFHLKRELLMGIFEAGFEKPSPIQEEAIPVALMGR 67
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
D++A A+ G+GKTA F+IP LEKLK + ++ALIL PTRELALQT + VK LG
Sbjct: 68 DILARAKNGTGKTAAFVIPTLEKLK--PKVNKIQALILVPTRELALQTSQVVKTLGAHLG 125
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171
+Q GG S+ + RLH ++V TPGR L +
Sbjct: 126 IQVMVTTGGTSLRDDIMRLHEPVHVLVGTPGRVLDL 161
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 264 GDSTEMIHKQRQSVRK-WDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFL 319
G++ E H +R+ + ++ +K + ++ IP+ L GRD++A A+ G+GKTA F+
Sbjct: 28 GNTFESFHLKRELLMGIFEAGFEKPSPIQEEAIPVALMGRDILARAKNGTGKTAAFV 84
>gi|395761621|ref|ZP_10442290.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 456
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 96/154 (62%), Gaps = 9/154 (5%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +++ V + GY +PTPIQ + IP VL G D++A A+TG+GKTA F +P+L +
Sbjct: 3 FSSLGLSDAIVRAVTEHGYTVPTPIQSQAIPAVLAGGDLLAGAQTGTGKTAGFTLPVLHR 62
Query: 99 LKTHA---------ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
L T A +T +RALIL+PTRELA Q + V+ K+TKL ST + GG ++
Sbjct: 63 LSTDANGASITSTTSTRPIRALILAPTRELAAQVEESVRAYSKYTKLNSTVIFGGVGINP 122
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
Q +L DI+VATPGR L + + + LS ++
Sbjct: 123 QIKQLKHGVDILVATPGRLLDHMGQGTVDLSKVE 156
>gi|380696525|ref|ZP_09861384.1| ATP-dependent RNA helicase [Bacteroides faecis MAJ27]
Length = 374
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 95/149 (63%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ + +LK V ++GY +PTPIQ K IP+ L RD++ A+TG+GKTA F IP+++
Sbjct: 3 FKELNITEPILKAVEEKGYTVPTPIQEKAIPVALVKRDILGCAQTGTGKTASFAIPIIQH 62
Query: 99 L---KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L K G++ALIL+PTRELALQ + + + K+T+++ + GG + Q LH
Sbjct: 63 LHLNKGEGKRLGIKALILTPTRELALQISECIDDYSKYTRIRHGVIFGGVNQRPQVDMLH 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI+VATPGR L ++ + ++L +IQY
Sbjct: 123 KGIDILVATPGRLLDLMNQGHIRLDNIQY 151
>gi|417332448|ref|ZP_12116332.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Alachua str. R6-377]
gi|353581688|gb|EHC42550.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Alachua str. R6-377]
Length = 412
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 100/156 (64%), Gaps = 11/156 (7%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA-------CF 91
F S GL ++L+ + ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F
Sbjct: 3 FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPGGVF 62
Query: 92 LIPMLEKLKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
+P+L+ L TH + VRALIL+PTRELA Q + V++ K+ ++S + GG S+
Sbjct: 63 TLPLLQHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSI 122
Query: 148 DNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ Q +L D++VATPGR L + + +KL I+
Sbjct: 123 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIE 158
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|345876776|ref|ZP_08828539.1| hypothetical protein Rifp1Sym_ag00100 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344226165|gb|EGV52505.1| hypothetical protein Rifp1Sym_ag00100 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 547
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 100/148 (67%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL +L+ V ++GY PTP+Q++ IP++L GRDV+A A+TG+GKTA F +P+LE
Sbjct: 65 FEKLGLSAPILRAVSEQGYTQPTPVQQQAIPVILSGRDVMAGAQTGTGKTAGFTLPLLEL 124
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L+ HA G VRAL+L+PTRELA Q + V++ GK+ L+ST + GG ++ Q +L
Sbjct: 125 LEEHAQGKGRRPVRALVLTPTRELAAQVGESVEQYGKYLPLKSTVIFGGVKINPQIEKLR 184
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L V + L LS I+
Sbjct: 185 HGVDILVATPGRLLDHVSQKTLDLSHIE 212
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 283 AKKKYVQ---VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+++ Y Q V IP++L GRDV+A A+TG+GKTA F
Sbjct: 79 SEQGYTQPTPVQQQAIPVILSGRDVMAGAQTGTGKTAGF 117
>gi|343493741|ref|ZP_08732041.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
gi|342825883|gb|EGU60344.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
Length = 485
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ + + GY+ P+PIQ + IP V++GRDV+A A+TG+GKTA F +P+L++
Sbjct: 3 FSSLGLSPELLRAIEELGYETPSPIQAQAIPPVIQGRDVMAAAQTGTGKTAGFTLPLLQR 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A ++ VRAL+L+PTRELA Q V + GK+ + S + GG ++ Q +L
Sbjct: 63 LAGGKSAKSNHVRALVLTPTRELAAQVNGSVVKYGKYLNVNSNVVFGGVKINPQMMKLRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +K S ++
Sbjct: 123 GSDVLVATPGRLLDLYQQNAVKFSQLE 149
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 92/151 (60%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK + + GY PTPIQ K IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 13 FDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A TS VRALIL+PTRELA Q V+ K T L+S + GG M+ Q
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSD 132
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I++ATPGR L V + L +Q
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
>gi|407714673|ref|YP_006835238.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
gi|407236857|gb|AFT87056.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
Length = 530
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +++ V + GY PTPIQ + IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTH---AATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + AA SG VRALIL+PTRELA Q + V+ GK+ KL+ST + GG ++ Q
Sbjct: 63 LHSMPPLAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L + DIVVATPGR L + + + LS ++
Sbjct: 123 ALKSGVDIVVATPGRLLDHMQQKTIDLSHLE 153
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMD 210
RLH+ P + A+ R + ++ + + Q + V+ GK+ KL+ST + GG ++
Sbjct: 60 LQRLHSMPPLAAASGKRAVRALILTPTRELAAQVE-ESVRAYGKYLKLKSTVMFGGVGIN 118
Query: 211 NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
Q L + DIVVATPGR L + + + LS +++ + D
Sbjct: 119 PQIGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLD 158
>gi|423107485|ref|ZP_17095180.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
gi|376388510|gb|EHT01205.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
Length = 454
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LIHKEPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNVRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ DI+VATPGR L + + + L ++
Sbjct: 123 RSGVDILVATPGRLLDLEHQNAVSLDKVE 151
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L + DI+VATPGR L + + + L +++ +
Sbjct: 95 VRDYSKYLNVRSLVVFGGVSINPQMMKLRSGVDILVATPGRLLDLEHQNAVSLDKVEVLV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|338212382|ref|YP_004656437.1| DEAD/DEAH box helicase [Runella slithyformis DSM 19594]
gi|336306203|gb|AEI49305.1| DEAD/DEAH box helicase domain protein [Runella slithyformis DSM
19594]
Length = 444
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F+ F L ++L + GY++P+PIQ + IPLVL+G DV+ +A+TG+GKTA +++P+L
Sbjct: 2 NFEDFNLNRQLLNAIADAGYEVPSPIQEQAIPLVLQGHDVLGIAQTGTGKTAAYVLPLLM 61
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
++K +A RALIL+PTREL +Q K + EL K+T L+ + GG Q L
Sbjct: 62 RIK-YAQGMHPRALILAPTRELVMQIGKALGELAKYTDLRHIAIYGGLGPKTQIEALQKG 120
Query: 158 PDIVVATPGRFLHIVVEMEL 177
DIVVATPGRFL + + E+
Sbjct: 121 VDIVVATPGRFLDLYLRGEI 140
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 187 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQL 246
K + EL K+T L+ + GG Q L DIVVATPGRFL + + E+ +
Sbjct: 88 KALGELAKYTDLRHIAIYGGLGPKTQIEALQKGVDIVVATPGRFLDLYLRGEIVVK---- 143
Query: 247 SLTDFKQDTSRIALDL-----VGDSTEMIHKQRQSV 277
LT D + +D+ + E+I ++RQ++
Sbjct: 144 QLTTLVMDEADKMMDMGFMPQINRILEVIPRKRQNL 179
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ + IPLVL+G DV+ +A+TG+GKTA ++ R
Sbjct: 27 IQEQAIPLVLQGHDVLGIAQTGTGKTAAYVLPLLMRI 63
>gi|300772029|ref|ZP_07081899.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
gi|300760332|gb|EFK57158.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
Length = 450
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
M F+ F ++L + + GY +PT IQ+K I VL G+D++ +A+TG+GKTA F++P
Sbjct: 1 MQNSFEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLP 60
Query: 95 MLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
ML KLK +A +RALILSPTRELA+Q + ++ K+ L++ L GG Q L
Sbjct: 61 MLMKLK-YAQGKDMRALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENL 119
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI+VATPGRFL + +E + + S+++
Sbjct: 120 EKGVDIIVATPGRFLDLYLEGHINVKSLKF 149
>gi|418530871|ref|ZP_13096791.1| hypothetical protein CTATCC11996_14313 [Comamonas testosteroni ATCC
11996]
gi|371451950|gb|EHN64982.1| hypothetical protein CTATCC11996_14313 [Comamonas testosteroni ATCC
11996]
Length = 609
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L +LK V ++GY+ PTPIQ + IPLVL G D++A A+TG+GKTA F +PML++
Sbjct: 3 FEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQR 62
Query: 99 LKTHAAT------SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A G+R L+L+PTRELA Q + ++ K+ + ST + GG M Q A
Sbjct: 63 LANGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRSYAKYLDITSTVIFGGVGMKPQIA 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ D++VATPGR L + + + LS+++
Sbjct: 123 RIEKGVDVLVATPGRLLDLAGQGFMDLSTVE 153
>gi|375259807|ref|YP_005018977.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca KCTC 1686]
gi|397656870|ref|YP_006497572.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca E718]
gi|402843597|ref|ZP_10891991.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. OBRC7]
gi|423102058|ref|ZP_17089760.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5242]
gi|365909285|gb|AEX04738.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca KCTC 1686]
gi|376389954|gb|EHT02641.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5242]
gi|394345401|gb|AFN31522.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca E718]
gi|402276707|gb|EJU25808.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. OBRC7]
Length = 449
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LIQKEPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNVRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ DI+VATPGR L + + + L ++
Sbjct: 123 RSGVDILVATPGRLLDLEHQNAVSLDKVE 151
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L + DI+VATPGR L + + + L +++ +
Sbjct: 95 VRDYSKYLNVRSLVVFGGVSINPQMMKLRSGVDILVATPGRLLDLEHQNAVSLDKVEVLV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
Length = 483
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 93/152 (61%), Gaps = 6/152 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + L ++L+ V GY+ TPIQ K IP+VL+GRDV+ A+TG+GKTA F IP+L+K
Sbjct: 19 FDTLALDPKLLRAVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQK 78
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
+ H TS VRAL+L+PTRELA Q VK K T+L+S + GG M Q A
Sbjct: 79 MLRHENTSMSPARHPVRALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQTA 138
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L A ++++ATPGR L + L+ ++Y
Sbjct: 139 ELKAGVEVLIATPGRLLDHIEARNAVLNQVEY 170
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
IP+VL+GRDV+ A+TG+GKTA F
Sbjct: 47 AIPIVLDGRDVMGAAQTGTGKTAAF 71
>gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 517
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +++ V + GY PTPIQ + IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTH---AATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + AA SG VRALIL+PTRELA Q + V+ GK+ KL+ST + GG ++ Q
Sbjct: 63 LHSMPPVAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L + DIVVATPGR L + + + LS ++
Sbjct: 123 ALKSGVDIVVATPGRLLDHMQQKTIDLSHLE 153
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMD 210
RLH+ P + A+ R + ++ + + Q + V+ GK+ KL+ST + GG ++
Sbjct: 60 LQRLHSMPPVAAASGKRAVRALILTPTRELAAQVE-ESVRAYGKYLKLKSTVMFGGVGIN 118
Query: 211 NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
Q L + DIVVATPGR L + + + LS +++ + D
Sbjct: 119 PQIGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLD 158
>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
Length = 423
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 102/169 (60%), Gaps = 11/169 (6%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F F L ++ G+ GYK PTPIQ ++IP +++GRDV+ +A+TG+GKTA F +P+L++
Sbjct: 3 FTQFNLHPQINAGIEALGYKTPTPIQMQSIPAIIQGRDVMGLAQTGTGKTAAFALPILQR 62
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L + VRALI++PTRELA Q + + E+ + TKL+S L GG S + Q +L
Sbjct: 63 L-MNGPGKMVRALIVAPTRELAEQINESINEMSRSTKLKSVALYGGVSKNPQIEKLRQGA 121
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ----------YTFKFVKELGKFTK 197
+I+VA PGR L +V + LS I+ + F+ E+ K TK
Sbjct: 122 EIIVACPGRLLDLVAQGVADLSGIEVFVLDEADRMFDMGFLPEIRKITK 170
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
+ E+ + TKL+S L GG S + Q +L +I+VA PGR L +V + LS I++ +
Sbjct: 90 INEMSRSTKLKSVALYGGVSKNPQIEKLRQGAEIIVACPGRLLDLVAQGVADLSGIEVFV 149
Query: 249 TD 250
D
Sbjct: 150 LD 151
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+IP +++GRDV+ +A+TG+GKTA F R G
Sbjct: 31 SIPAIIQGRDVMGLAQTGTGKTAAFALPILQRLMNG 66
>gi|449052728|ref|ZP_21732359.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
gi|448875863|gb|EMB10868.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
Length = 451
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L ++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVSLDKVE 151
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP VL+GRD++A A+TG+GKTA F R
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 63
>gi|423128237|ref|ZP_17115916.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
gi|376393593|gb|EHT06249.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
Length = 449
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LVQKEPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNVRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ DI+VATPGR L + + + L ++
Sbjct: 123 RSGVDILVATPGRLLDLEHQNAVSLDKVE 151
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L + DI+VATPGR L + + + L +++ +
Sbjct: 95 VRDYSKYLNVRSLVVFGGVSINPQMMKLRSGVDILVATPGRLLDLEHQNAVSLDKVEVLV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
A++ YV+ T IP VL+GRD++A A+TG+GKTA F
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60
>gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|365139153|ref|ZP_09345663.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|378977819|ref|YP_005225960.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386033962|ref|YP_005953875.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|419974710|ref|ZP_14490127.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419977806|ref|ZP_14493104.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987058|ref|ZP_14502183.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991473|ref|ZP_14506438.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997938|ref|ZP_14512730.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003806|ref|ZP_14518449.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420006904|ref|ZP_14521400.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420012540|ref|ZP_14526853.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420020791|ref|ZP_14534976.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024066|ref|ZP_14538080.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031055|ref|ZP_14544878.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420038792|ref|ZP_14552435.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041896|ref|ZP_14555391.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420046990|ref|ZP_14560308.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056136|ref|ZP_14569296.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061472|ref|ZP_14574460.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064158|ref|ZP_14576968.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420069526|ref|ZP_14582181.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078157|ref|ZP_14590617.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420084520|ref|ZP_14596776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|424829756|ref|ZP_18254484.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|424934331|ref|ZP_18352703.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425077527|ref|ZP_18480630.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425088160|ref|ZP_18491253.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425090700|ref|ZP_18493785.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428940153|ref|ZP_19013245.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|339761090|gb|AEJ97310.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|363654512|gb|EHL93410.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|364517230|gb|AEW60358.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397345127|gb|EJJ38254.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397345977|gb|EJJ39096.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397353346|gb|EJJ46420.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397361555|gb|EJJ54216.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363734|gb|EJJ56371.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397368249|gb|EJJ60856.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397381416|gb|EJJ73587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397385751|gb|EJJ77846.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397387462|gb|EJJ79487.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397399449|gb|EJJ91101.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400795|gb|EJJ92433.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403895|gb|EJJ95434.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397417455|gb|EJK08620.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397417749|gb|EJK08912.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397420966|gb|EJK12007.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397430627|gb|EJK21316.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397433767|gb|EJK24410.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397442774|gb|EJK33116.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397445167|gb|EJK35418.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397450132|gb|EJK40246.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|405593236|gb|EKB66688.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405602292|gb|EKB75434.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405613678|gb|EKB86407.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407808518|gb|EKF79769.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|414707181|emb|CCN28885.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426302754|gb|EKV64945.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
Length = 451
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L ++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVSLDKVE 151
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP VL+GRD++A A+TG+GKTA F R
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 63
>gi|85058891|ref|YP_454593.1| ATP-dependent RNA helicase RhlE [Sodalis glossinidius str.
'morsitans']
gi|84779411|dbj|BAE74188.1| putative ATP-dependent RNA helicase [Sodalis glossinidius str.
'morsitans']
Length = 453
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 96/150 (64%), Gaps = 5/150 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL EVL+ + ++GY PTP+Q++ IP VL+GRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSAEVLRALAEKGYLEPTPVQQQAIPYVLQGRDIMASAQTGTGKTAAFTLPILQL 62
Query: 99 LKTHAATSG-----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L A +G +RALIL+PTRELA Q + + E L+S + GG S++ Q +
Sbjct: 63 LDQRPAPAGKQRRPIRALILTPTRELAAQIGENITEYSAHLGLRSLVVFGGVSINPQMMK 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +++VATPGR L + + + LS ++
Sbjct: 123 LRGGVEVLVATPGRLLDLAQQRAVDLSQVE 152
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 283 AKKKYVQ---VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
A+K Y++ V IP VL+GRD++A A+TG+GKTA F D+
Sbjct: 17 AEKGYLEPTPVQQQAIPYVLQGRDIMASAQTGTGKTAAFTLPILQLLDQ 65
>gi|425080638|ref|ZP_18483735.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|428933930|ref|ZP_19007468.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae JHCK1]
gi|405605773|gb|EKB78777.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|426304047|gb|EKV66201.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae JHCK1]
Length = 451
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LILNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L ++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVSLDKVE 151
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP VL+GRD++A A+TG+GKTA F R
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 63
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L DI+VATPGR L + + + L +++ +
Sbjct: 95 VRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
>gi|227536058|ref|ZP_03966107.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
gi|227243955|gb|EEI93970.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
Length = 450
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
M F+ F ++L + + GY +PT IQ+K I VL G+D++ +A+TG+GKTA F++P
Sbjct: 1 MQNSFEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLP 60
Query: 95 MLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
ML KLK +A +RALILSPTRELA+Q + ++ K+ L++ L GG Q L
Sbjct: 61 MLMKLK-YAQGKDMRALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENL 119
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI+VATPGRFL + +E + + S+++
Sbjct: 120 EKGVDIIVATPGRFLDLYLEGHINVKSLKF 149
>gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Photobacterium angustum
S14]
gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Photobacterium angustum
S14]
Length = 497
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +L+ V K+GY+ P+PIQ + IP +L G+DV+A A+TG+GKTA F +P+LE+
Sbjct: 3 FASLGLSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A ++ VRAL+L+PTRELA Q + V GK +L S + GG ++ Q R+
Sbjct: 63 LANGRPARSNHVRALVLTPTRELAAQVGESVATYGKNLRLSSAVVFGGVKVNPQMLRMRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K ++
Sbjct: 123 GADVLVATPGRLMDLHSQNAVKFRDVE 149
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V GK +L S + GG ++ Q R+ D++VATPGR + + + +K +++ +
Sbjct: 93 VATYGKNLRLSSAVVFGGVKVNPQMLRMRKGADVLVATPGRLMDLHSQNAVKFRDVEILV 152
Query: 249 TD 250
D
Sbjct: 153 LD 154
>gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
Length = 443
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 96/148 (64%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L E+L+ V K+GY TPIQ+K IPLVLEG D++A A+TG+GKTA F +PML++
Sbjct: 3 FKDLSLSAELLRAVEKQGYDKATPIQQKAIPLVLEGSDLLAGAQTGTGKTAGFTLPMLQR 62
Query: 99 LKTH---AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L+ A S +AL+L+PTRELA Q + V++ G + +S + GG S++ Q +L
Sbjct: 63 LQNKYPGTAKSYPKALVLTPTRELAAQVHESVRDYGAYLPFKSAVIFGGVSINPQKQKLI 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+VVATPGR L V + + LS I+
Sbjct: 123 KGVDVVVATPGRLLDHVQQRSIDLSKIE 150
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 286 KYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
K + IPLVLEG D++A A+TG+GKTA F R
Sbjct: 23 KATPIQQKAIPLVLEGSDLLAGAQTGTGKTAGFTLPMLQRL 63
>gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
Length = 480
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 96/149 (64%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 6 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 65
Query: 99 LKT-----HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 66 LHTFYAEHRNAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDA 125
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LSS+
Sbjct: 126 LKRGVDIVVATPGRLLDHMQQKTIDLSSL 154
>gi|386818532|ref|ZP_10105750.1| DEAD/DEAH box helicase domain protein [Thiothrix nivea DSM 5205]
gi|386423108|gb|EIJ36943.1| DEAD/DEAH box helicase domain protein [Thiothrix nivea DSM 5205]
Length = 446
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL +L+ + ++GY PTPIQ++ IP VL GRD++A A+TG+GKTA F +PML +
Sbjct: 3 FSELGLAEPLLRAIAEQGYATPTPIQQQGIPAVLSGRDLMAAAQTGTGKTAGFTLPMLHR 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A++ +RAL+L+PTRELA Q + V++ G L ST + GG S++ Q L
Sbjct: 63 LMEGKRPASNHIRALVLTPTRELAAQVGESVRDYGAHLPLASTIVFGGVSINPQMMALRK 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +K S ++
Sbjct: 123 GVDVLVATPGRLLDLYEQNAVKFSQVE 149
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ G L ST + GG S++ Q L D++VATPGR L + + +K S +++ +
Sbjct: 93 VRDYGAHLPLASTIVFGGVSINPQMMALRKGVDVLVATPGRLLDLYEQNAVKFSQVEMLV 152
Query: 249 TD 250
D
Sbjct: 153 LD 154
>gi|413963140|ref|ZP_11402367.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928972|gb|EKS68260.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 493
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK V + GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 19 FDQFGLSADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 78
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A TS VRAL+L+PTRELA Q V+ K T L+ST + GG M+ Q
Sbjct: 79 LLPSANTSASPARHPVRALMLTPTRELADQVAANVQTYSKHTPLRSTVVFGGVDMNPQSD 138
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L V + + L +Q
Sbjct: 139 ALRRGVEILIATPGRLLDHVQQKTVNLGQVQ 169
>gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 530
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +++ V + GY PTPIQ + IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTH---AATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + AA SG VRALIL+PTRELA Q + V+ GK+ KL+ST + GG ++ Q
Sbjct: 63 LHSMPPLAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L + DIVVATPGR L + + + LS ++
Sbjct: 123 ALKSGVDIVVATPGRLLDHMQQKTIDLSHLE 153
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMD 210
RLH+ P + A+ R + ++ + + Q + V+ GK+ KL+ST + GG ++
Sbjct: 60 LQRLHSMPPLAAASGKRAVRALILTPTRELAAQVE-ESVRAYGKYLKLKSTVMFGGVGIN 118
Query: 211 NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
Q L + DIVVATPGR L + + + LS +++ + D
Sbjct: 119 PQIGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLD 158
>gi|264677685|ref|YP_003277591.1| hypothetical protein CtCNB1_1549 [Comamonas testosteroni CNB-2]
gi|262208197|gb|ACY32295.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 616
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L +LK V ++GY+ PTPIQ + IPLVL G D++A A+TG+GKTA F +PML++
Sbjct: 6 FEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQR 65
Query: 99 LKTHAAT------SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A G+R L+L+PTRELA Q + ++ K+ + ST + GG M Q A
Sbjct: 66 LASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQIA 125
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ D++VATPGR L + + + LS+++
Sbjct: 126 RIEKGVDVLVATPGRLLDLAGQGFMDLSTVE 156
>gi|420459761|ref|ZP_14958560.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-27]
gi|393076863|gb|EJB77612.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-27]
Length = 492
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 87/132 (65%), Gaps = 3/132 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F GL VLK V + G+ P+PIQ K IP VL+GRDV+A A+TG+GKTA F +P++
Sbjct: 21 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
LK + + AL+++PTRELA+Q + +LGK+T+ ++ C+ GG S+ Q + +
Sbjct: 81 NLKNNHT---IEALVITPTRELAMQISDEIFKLGKYTRTKTVCVYGGQSVKKQCEFIKKN 137
Query: 158 PDIVVATPGRFL 169
P +++ATPGR L
Sbjct: 138 PQVMIATPGRLL 149
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 218
+ +V TP R L + + E+ FK LGK+T+ ++ C+ GG S+ Q +
Sbjct: 89 EALVITPTRELAMQISDEI--------FK----LGKYTRTKTVCVYGGQSVKKQCEFIKK 136
Query: 219 SPDIVVATPGRFL 231
+P +++ATPGR L
Sbjct: 137 NPQVMIATPGRLL 149
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP VL+GRDV+A A+TG+GKTA F
Sbjct: 46 IQEKAIPAVLQGRDVIAQAQTGTGKTAAF 74
>gi|336249396|ref|YP_004593106.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
gi|334735452|gb|AEG97827.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
Length = 446
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LTQDQPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L ++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVSLDKVE 151
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP VL+GRD++A A+TG+GKTA F R
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 63
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L DI+VATPGR L + + + L +++ +
Sbjct: 95 VRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEVLV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
>gi|253990397|ref|YP_003041753.1| putative atp-dependent rna helicase rhle [Photorhabdus asymbiotica]
gi|253781847|emb|CAQ85010.1| putative atp-dependent rna helicase rhle [Photorhabdus asymbiotica]
Length = 444
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++L + ++GY PTPIQ++ IP+VL G+D++A A+TG+GKTA F +PML+
Sbjct: 3 FESLGLDADILCAIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQL 62
Query: 99 LKTHAA-TSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T G VRALIL+PTRELA Q + V+ K+ +L+S + GG S++ Q +L
Sbjct: 63 LNNSPVQTKGRRPVRALILTPTRELAAQVGENVRNYSKYLRLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + LS ++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSRVE 151
>gi|212558407|gb|ACJ30861.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
piezotolerans WP3]
Length = 432
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 96/149 (64%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+SF E+L+ + + GY+ TPIQ++ IP V G+DV+A A+TG+GKTA F +P+L+K
Sbjct: 3 FESFSFAPEILRAISECGYQKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFSLPILQK 62
Query: 99 -LKTHAAT--SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L +AT S RALIL+PTRELA Q + + K+ ++ ++GG MD+Q +L
Sbjct: 63 MLDNPSATQRSNARALILTPTRELAAQIADNINDYAKYLEVNVVTIVGGVKMDSQATKLK 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR L +V L LS++ +
Sbjct: 123 RGADIIIATPGRLLEHIVACNLSLSNVDF 151
>gi|260223291|emb|CBA33706.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 608
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L ++K V ++GY+ PT IQ + IPLVLEG D++ A+TG+GKTA F +P+L +
Sbjct: 23 FEELKLAPAIVKAVREQGYETPTAIQAQAIPLVLEGHDLLGGAQTGTGKTAAFTLPLLHR 82
Query: 99 LKTHAAT------SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + +G+RAL+L+PTRELA Q + V++ GK+ +L ST + GG M+ Q +
Sbjct: 83 LSMSRSAQNKFGGTGIRALVLTPTRELAAQVEESVRQYGKYLQLSSTVVFGGVGMNPQIS 142
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
++ DI+VATPGR L + + L L +Q
Sbjct: 143 KVKKGVDILVATPGRLLDLAQQGMLDLGQVQ 173
>gi|425299062|ref|ZP_18689104.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 07798]
gi|408221005|gb|EKI44988.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 07798]
Length = 448
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 98/146 (67%), Gaps = 4/146 (2%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+ L T
Sbjct: 1 MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60
Query: 102 ---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 61 RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVE 146
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 55
>gi|407893670|ref|ZP_11152700.1| ATP-dependent RNA helicase RhlE [Diplorickettsia massiliensis 20B]
Length = 354
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++F +L G+ GY PTPIQ K IP++LEG+DVV +A+TG+GKTA F++P+L++
Sbjct: 13 FKNFRFDPRILSGIQASGYTAPTPIQNKAIPVILEGQDVVGLAQTGTGKTAAFVLPLLQQ 72
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L T +RALI+ PTRELA Q + ++ LG+ T L+ST L GG ++ QF L
Sbjct: 73 LLT-GQKGRLRALIIVPTRELAEQIHQTIRTLGRDTGLRSTTLYGGVNLTKQFQMLRRGV 131
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI +A PGR L + + S +Q+
Sbjct: 132 DIAIACPGRLLDHIDRQNIDFSHLQF 157
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
++ LG+ T L+ST L GG ++ QF L DI +A PGR L + + S +Q +
Sbjct: 100 IRTLGRDTGLRSTTLYGGVNLTKQFQMLRRGVDIAIACPGRLLDHIDRQNIDFSHLQFLV 159
Query: 249 TD 250
D
Sbjct: 160 LD 161
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLF 320
+ + IP++LEG+DVV +A+TG+GKTA F+
Sbjct: 37 IQNKAIPVILEGQDVVGLAQTGTGKTAAFVL 67
>gi|427710423|ref|YP_007052800.1| DEAD/DEAH box helicase [Nostoc sp. PCC 7107]
gi|427362928|gb|AFY45650.1| DEAD/DEAH box helicase domain protein [Nostoc sp. PCC 7107]
Length = 476
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 98/154 (63%), Gaps = 7/154 (4%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F GL E+++ V + GY PTPIQ + IP VL GRD++A A+TG+GKTA F +P+L+
Sbjct: 42 SFSHLGLSNEIIRAVTELGYTKPTPIQMQAIPAVLSGRDLLAGAQTGTGKTASFTLPLLQ 101
Query: 98 KL---KTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150
KL K+ +TS +RALIL+PTRELA Q V+E K+ KL + + GG S++ Q
Sbjct: 102 KLSSEKSLKSTSYECFPIRALILTPTRELAAQVELNVREYSKYLKLNTMAMFGGVSINPQ 161
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L DI+VATPGR L V + + LS++++
Sbjct: 162 KKLLRGRVDILVATPGRLLDHVQQRTVNLSNVEF 195
>gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 518
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +++ V + GY PTPIQ + IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSEPLVRAVNELGYTSPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + A +G VRALIL+PTRELA Q + V+ GK+ KL+ST + GG ++ Q L
Sbjct: 63 LNSMAPAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDAL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DIVVATPGR L + + + LS ++
Sbjct: 123 KRGVDIVVATPGRLLDHMQQKTIDLSHLE 151
>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
Length = 457
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL EV + V + GY PTPIQ + IP VL GRDV+A A+TG+GKTA F +P++ +
Sbjct: 4 FAELGLPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPIIAR 63
Query: 99 LKTHA------ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L+ +A A VR LIL+PTRELA Q V+ K+ L+ TC+ GG +MD Q A
Sbjct: 64 LRHYATHSVSPAMHPVRCLILTPTRELADQIAASVQSYTKYLPLRHTCVFGGVNMDPQKA 123
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L DIVVATPGR L + + ++L+ ++
Sbjct: 124 DLMRGMDIVVATPGRLLDHLEQKTIQLNRVE 154
>gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 510
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +++ V + GY PTPIQ + IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A + VRALIL+PTRELA Q + V+ GK+ KL+ST + GG ++ Q
Sbjct: 63 LNSMPANTSASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L + DIVVATPGR L + + + LS ++
Sbjct: 123 ALRSGVDIVVATPGRLLDHMQQKTIDLSHLE 153
>gi|444352450|ref|YP_007388594.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
gi|443903280|emb|CCG31054.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
Length = 446
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LTQEQPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L ++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVSLDKVE 151
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP VL+GRD++A A+TG+GKTA F R
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 63
>gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 484
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 96/149 (64%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKT-----HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTFYADNRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS++
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQKTIDLSNL 151
>gi|221068202|ref|ZP_03544307.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220713225|gb|EED68593.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 613
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L +LK V ++GY+ PTPIQ + IPLVL G D++A A+TG+GKTA F +PML++
Sbjct: 3 FEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQR 62
Query: 99 LKTHAAT------SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A G+R L+L+PTRELA Q + ++ K+ + ST + GG M Q A
Sbjct: 63 LASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQIA 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ D++VATPGR L + + + LS+++
Sbjct: 123 RIEKGVDVLVATPGRLLDLAGQGFMDLSTVE 153
>gi|333891675|ref|YP_004465550.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
Length = 457
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL +L+ + K+GY P+PIQ++ IP++LEG+D++A A+TG+GKTA F +P+L +
Sbjct: 3 FSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLLHR 62
Query: 99 L--KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L AA++ VRALIL+PTRELA Q + VK +F L++ + GG ++ Q L +
Sbjct: 63 LLDGRPAASNCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKALRS 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + +K S ++
Sbjct: 123 GVDVLIATPGRLLDLYQQNAVKFSQLE 149
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ IP++LEG+D++A A+TG+GKTA F R
Sbjct: 27 IQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLLHRL 63
>gi|430809219|ref|ZP_19436334.1| RNA helicase [Cupriavidus sp. HMR-1]
gi|429498363|gb|EKZ96873.1| RNA helicase [Cupriavidus sp. HMR-1]
Length = 498
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 98/162 (60%), Gaps = 6/162 (3%)
Query: 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGK 87
T D+ F+SFGL VL+ + ++GY PTPIQ + IP+VL G+DV+ A+TG+GK
Sbjct: 6 TQDQAPAAEQTFESFGLDPRVLRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGK 65
Query: 88 TACFLIPMLEKLKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCL 141
TA F +P++++L A S VRAL+L+PTRELA Q + V K T L+ST +
Sbjct: 66 TAGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVV 125
Query: 142 LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
GG M+ Q L +I+VATPGR L V + + LS +Q
Sbjct: 126 FGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQ 167
>gi|420249963|ref|ZP_14753195.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|398063077|gb|EJL54833.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 513
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++++ V + GY PTPIQ++ IP VL+G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSEQLVRAVNELGYTSPTPIQQQAIPAVLKGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T G VRALIL+PTRELA Q + V+ GK+ KL+ST + GG ++ Q L
Sbjct: 63 LLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDAL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DIVVATPGR L + + + LS ++
Sbjct: 123 RRGVDIVVATPGRLLDHMQQKTIDLSHLE 151
>gi|390571862|ref|ZP_10252096.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389936192|gb|EIM98086.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 513
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++++ V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLSEQLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T G VRALIL+PTRELA Q + V+ GK+ KL+ST + GG ++ Q L
Sbjct: 63 LLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDAL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DIVVATPGR L + + + LS ++
Sbjct: 123 RRGVDIVVATPGRLLDHMQQKTIDLSHLE 151
>gi|110833595|ref|YP_692454.1| DEAD/DEAH box helicase [Alcanivorax borkumensis SK2]
gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
borkumensis SK2]
Length = 459
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL + V +RGY P+PIQ + IP VL GRDV+A A+TG+GKTA F +P+LE+
Sbjct: 3 FSDLGLCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLER 62
Query: 99 LKTH--AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L+T A + VRAL+L+PTRELA Q + V GK L ST + GG ++ Q RL
Sbjct: 63 LRTGSPARNNQVRALVLTPTRELAAQVAESVATYGKNLPLTSTVVFGGVKINPQMQRLRG 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +K ++
Sbjct: 123 GCDVLVATPGRLLDLYQQNAVKFDHLE 149
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330
+ IP VL GRDV+A A+TG+GKTA F R G+
Sbjct: 27 IQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLERLRTGS 67
>gi|386284070|ref|ZP_10061293.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
gi|385344973|gb|EIF51686.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
Length = 429
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 7/150 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL +LK + ++GY PTPIQ++ IP+V+EG+DV+A A+TG+GKTA F +P+LEK
Sbjct: 3 FTNLGLSEPLLKAIKEQGYDTPTPIQQQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLEK 62
Query: 99 L-----KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L K H +RAL+L+PTRELA Q + +K GK ST + GG ++ Q A
Sbjct: 63 LSKTQPKMHKKQ--IRALVLTPTRELAAQVAESIKTYGKHLPYTSTVIFGGVGINPQLAA 120
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ +IV+ATPGR L I + + S+++
Sbjct: 121 IRKGVEIVIATPGRLLDIAGQKGIDFSALE 150
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
+ IP+V+EG+DV+A A+TG+GKTA F + +
Sbjct: 27 IQQQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLEKLSK 65
>gi|238589821|ref|XP_002392132.1| hypothetical protein MPER_08336 [Moniliophthora perniciosa FA553]
gi|215457763|gb|EEB93062.1| hypothetical protein MPER_08336 [Moniliophthora perniciosa FA553]
Length = 335
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 99/166 (59%), Gaps = 23/166 (13%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKL 99
GL +L+ + +GY++PTPIQR +IP +L +D+V MARTGSGK+ ++IP++++L
Sbjct: 1 MGLHPSLLRSLSLQGYRVPTPIQRLSIPALLANPPQDLVGMARTGSGKSLAYMIPLVQRL 60
Query: 100 K-THAATSGVRALILSPTRELALQTFKFVKELG--------------------KFTKLQS 138
H+ T G RALIL PTR A+Q K KEL K L+
Sbjct: 61 GGRHSTTFGARALILLPTRVPAIQILKVGKELTRGWGHDKGVHAGDSKDTEDFKGANLRW 120
Query: 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ ++GG+ +D QF + +PD+++ATPGR LH+ VEM L L S+ Y
Sbjct: 121 SLIVGGEGLDEQFETMTNNPDVIIATPGRLLHLAVEMNLDLKSVHY 166
>gi|421918244|ref|ZP_16347776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|410119452|emb|CCM90401.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
Length = 418
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L ++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVSLDKVE 151
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP VL+GRD++A A+TG+GKTA F R
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 63
>gi|420334965|ref|ZP_14836583.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-315]
gi|391266947|gb|EIQ25888.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-315]
Length = 449
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 98/146 (67%), Gaps = 4/146 (2%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+ L T
Sbjct: 1 MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60
Query: 102 ---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 61 RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVE 146
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 55
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL ++LK V + GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 19 FDQFGLSSDILKAVRESGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 78
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A TS VRAL+L+PTRELA Q V+ K T L+ST + GG M+ Q
Sbjct: 79 LLPTANTSASPARHPVRALMLTPTRELADQVAANVQTYSKHTPLRSTVVFGGVDMNPQSD 138
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L V + + L +Q
Sbjct: 139 ALRRGVEILIATPGRLLDHVQQKTVNLGQVQ 169
>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 860
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L + K V K GY PTPIQ K IPL+L G+D++A A TGSGKTA F++P+LE+
Sbjct: 236 FEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILER 295
Query: 99 LKTHAATSGV-RALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
L AT V R LI+ PTRELALQ + L +FT +QS ++GG S Q L
Sbjct: 296 LLYRDATHRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQEHELRKR 355
Query: 158 PDIVVATPGRFL-HIVVEMELKLSSIQ 183
PD+++ATPGR + H++ ++ L I+
Sbjct: 356 PDVIIATPGRLIDHLLNAHDVGLEDIE 382
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
AK Y Q T IPL+L G+D++A A TGSGKTA F+ R
Sbjct: 250 AKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILERL 296
>gi|91785132|ref|YP_560338.1| ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400]
gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
LB400]
Length = 543
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +++ V + GY PTPIQ + IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 25 FDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 84
Query: 99 LKTHAATS------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + A + VRALIL+PTRELA Q + V+ GK+ KL+ST + GG ++ Q
Sbjct: 85 LNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 144
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L + DIVVATPGR L + + + LS ++
Sbjct: 145 ALRSGVDIVVATPGRLLDHMQQKTIDLSHLE 175
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMD 210
RL++SP + + R + ++ + + Q + V+ GK+ KL+ST + GG ++
Sbjct: 82 LQRLNSSPAVANGSGKRAVRALILTPTRELAAQVE-ESVRAYGKYLKLKSTVMFGGVGIN 140
Query: 211 NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
Q L + DIVVATPGR L + + + LS +++ + D
Sbjct: 141 PQIGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLD 180
>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
Length = 491
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 98/145 (67%), Gaps = 2/145 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL E++K V G++ P+PIQ++ IP+ ++G+D++ A+TG+GKTA F IP+L++
Sbjct: 5 FKELGLSEEIMKAVADMGFEEPSPIQKEAIPIAMQGKDLIGQAQTGTGKTAAFGIPILQR 64
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+ T + G +A++LSPTRELA+Q+ + + L ++ +++ + GG ++ QF L P
Sbjct: 65 IDT--SKPGPQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKKKP 122
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
+I+VATPGR + + + LS++Q
Sbjct: 123 NIIVATPGRLMDHMKRKTIDLSNVQ 147
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 12/93 (12%)
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 217
P +V +P R EL + S + + L ++ +++ + GG ++ QF L
Sbjct: 72 PQAIVLSPTR--------ELAIQSAEE----INHLAQYMNIKTIPIYGGQDIERQFRALK 119
Query: 218 ASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
P+I+VATPGR + + + LS++Q+++ D
Sbjct: 120 KKPNIIVATPGRLMDHMKRKTIDLSNVQIAVLD 152
>gi|421909360|ref|ZP_16339178.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410116748|emb|CCM81803.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
Length = 463
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L ++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVSLDKVE 151
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP VL+GRD++A A+TG+GKTA F R
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 63
>gi|428151523|ref|ZP_18999239.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|427538506|emb|CCM95377.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 459
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L++
Sbjct: 3 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L ++
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVSLDKVE 151
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP VL+GRD++A A+TG+GKTA F R
Sbjct: 17 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 63
>gi|387907613|ref|YP_006337947.1| ATP-dependent RNA helicase [Helicobacter pylori XZ274]
gi|387572548|gb|AFJ81256.1| ATP-dependent RNA helicase [Helicobacter pylori XZ274]
Length = 492
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 86/132 (65%), Gaps = 3/132 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F GL VLK V + G+ P+PIQ K IP VL+GRDV+A A+TG+GKTA F +P++
Sbjct: 21 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
LK + + AL+++PTRELA+Q + +LGK T+ ++ C+ GG S+ Q + S
Sbjct: 81 NLKNNHT---IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKS 137
Query: 158 PDIVVATPGRFL 169
P +++ATPGR L
Sbjct: 138 PQVMIATPGRLL 149
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 218
+ +V TP R L + + E+ FK LGK T+ ++ C+ GG S+ Q +
Sbjct: 89 EALVITPTRELAMQISDEI--------FK----LGKHTRTKTVCVYGGQSVKKQCEFIKK 136
Query: 219 SPDIVVATPGRFL 231
SP +++ATPGR L
Sbjct: 137 SPQVMIATPGRLL 149
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP VL+GRDV+A A+TG+GKTA F
Sbjct: 46 IQEKAIPAVLQGRDVIAQAQTGTGKTAAF 74
>gi|343512983|ref|ZP_08750095.1| DNA and RNA helicase [Vibrio scophthalmi LMG 19158]
gi|342793951|gb|EGU29734.1| DNA and RNA helicase [Vibrio scophthalmi LMG 19158]
Length = 521
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S L +LK + ++GY P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLALSAPILKAIQEQGYDTPSPIQAQAIPAVLEGQDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L A ++ VRALIL+PTRELA Q + V ++ L ST + GG ++ Q +L
Sbjct: 62 LLSKGQKAKSNHVRALILTPTRELAAQIQENVHNYSRYLDLNSTVVFGGVKINPQMMQLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + S ++
Sbjct: 122 KGSDILVATPGRLLDLFNQKAVNFSQLE 149
>gi|452966944|gb|EME71951.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 572
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GLG E+LK + + GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +PM+E
Sbjct: 20 FEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIEI 79
Query: 99 LKTHAATSGV-RALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
L A + + R+LIL+PTRELA Q + + GK+ L+ ++GG+SM +Q A L
Sbjct: 80 LAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVALLDRG 139
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
D+++ATPGR L + + L+ ++
Sbjct: 140 VDVLIATPGRLLDMFERGRILLNDVK 165
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 193 GKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
GK+ L+ ++GG+SM +Q A L D+++ATPGR L + + L+ +++ + D
Sbjct: 113 GKYHPLKKALIIGGESMSDQVALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVID 170
>gi|424075736|ref|ZP_17813076.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA505]
gi|424094910|ref|ZP_17830656.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1985]
gi|424101330|ref|ZP_17836476.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1990]
gi|424132527|ref|ZP_17865318.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA10]
gi|424139068|ref|ZP_17871353.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA14]
gi|424454056|ref|ZP_17905582.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA33]
gi|424466839|ref|ZP_17917018.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA41]
gi|424567552|ref|ZP_18008456.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4448]
gi|425142383|ref|ZP_18542670.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0869]
gi|425184632|ref|ZP_18582246.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1997]
gi|425309735|ref|ZP_18699189.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1735]
gi|425321723|ref|ZP_18710381.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1737]
gi|425346380|ref|ZP_18733171.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1849]
gi|428945401|ref|ZP_19018016.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1467]
gi|429024709|ref|ZP_19091099.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0427]
gi|444968033|ref|ZP_21285499.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1793]
gi|390652270|gb|EIN30494.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA505]
gi|390672006|gb|EIN48371.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1990]
gi|390672509|gb|EIN48807.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1985]
gi|390707718|gb|EIN81057.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA10]
gi|390710520|gb|EIN83538.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA14]
gi|390754145|gb|EIO23767.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA33]
gi|390775273|gb|EIO43340.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA41]
gi|390913428|gb|EIP72014.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4448]
gi|408115758|gb|EKH47123.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1997]
gi|408237515|gb|EKI60370.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1735]
gi|408252100|gb|EKI73797.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1737]
gi|408278182|gb|EKI97944.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1849]
gi|408603387|gb|EKK77028.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0869]
gi|427215678|gb|EKV84846.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1467]
gi|427291116|gb|EKW54560.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0427]
gi|444585228|gb|ELV60806.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1793]
Length = 450
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 98/146 (67%), Gaps = 4/146 (2%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+ L T
Sbjct: 1 MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60
Query: 102 ---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 61 RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVE 146
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 55
>gi|415771440|ref|ZP_11485299.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431]
gi|417617233|ref|ZP_12267663.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli G58-1]
gi|419400716|ref|ZP_13941447.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15C]
gi|425114155|ref|ZP_18515976.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0566]
gi|425282199|ref|ZP_18673305.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW00353]
gi|315619798|gb|EFV00317.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431]
gi|345380405|gb|EGX12304.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli G58-1]
gi|378251021|gb|EHY10922.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15C]
gi|408205467|gb|EKI30348.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW00353]
gi|408571867|gb|EKK47794.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0566]
Length = 449
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 98/146 (67%), Gaps = 4/146 (2%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+ L T
Sbjct: 1 MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60
Query: 102 ---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 61 RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVE 146
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 55
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F FGL +L+ + ++GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +P++++
Sbjct: 44 FDGFGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQR 103
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+TS VRALIL+PTRELA Q V K T L+S + GG M+ Q A
Sbjct: 104 LLPLASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQTA 163
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I++ATPGR L V + L+ +Q
Sbjct: 164 ELRRGVEILIATPGRLLDHVQQKSTSLAQVQ 194
>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 496
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK V ++GY P+PIQ + IP V+EG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 98 KLKTHAAT--SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L + VRAL+L+PTRELA Q + V++ K L S + GG ++ Q RL
Sbjct: 62 RLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +K ++
Sbjct: 122 RGVDVLVATPGRLLDLANQNAIKFDQLE 149
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP V+EG+DV+A A+TG+GKTA F R G
Sbjct: 31 AIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSNG 66
>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
Length = 500
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK V ++GY P+PIQ + IP V+EG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 98 KLKTHAAT--SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L + VRAL+L+PTRELA Q + V++ K L S + GG ++ Q RL
Sbjct: 62 RLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +K ++
Sbjct: 122 RGVDVLVATPGRLLDLANQNAIKFDQLE 149
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP V+EG+DV+A A+TG+GKTA F R G
Sbjct: 32 IPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSNG 66
>gi|343506044|ref|ZP_08743563.1| DNA and RNA helicase [Vibrio ichthyoenteri ATCC 700023]
gi|342804304|gb|EGU39623.1| DNA and RNA helicase [Vibrio ichthyoenteri ATCC 700023]
Length = 524
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S L +LK + ++GY P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLALSAPILKAIQEQGYDTPSPIQAQAIPAVLEGQDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L A ++ VRALIL+PTRELA Q + V ++ L ST + GG ++ Q +L
Sbjct: 62 LLSKGQKAKSNHVRALILTPTRELAAQIQENVHNYSRYLDLNSTVVFGGVKINPQMMQLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + S ++
Sbjct: 122 KGSDILVATPGRLLDLFNQRAVNFSQLE 149
>gi|145589523|ref|YP_001156120.1| DEAD/DEAH box helicase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047929|gb|ABP34556.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 426
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 97/148 (65%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL +L+ + + GY PTPIQ K+IP VL+G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FTDLGLSEPILRAIAEEGYTSPTPIQAKSIPAVLKGGDLLAAAQTGTGKTAGFTLPILQR 62
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L + A+SG +R LIL+PTRELA Q + V GK+T L+ST + GG + Q +
Sbjct: 63 LSSIKASSGKRVLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKAIA 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
A DI+VATPGR L ++ + + L+ I+
Sbjct: 123 AGLDILVATPGRLLDLMSQKCVSLNDIE 150
>gi|343514647|ref|ZP_08751716.1| DNA and RNA helicase [Vibrio sp. N418]
gi|342799724|gb|EGU35281.1| DNA and RNA helicase [Vibrio sp. N418]
Length = 521
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S L +LK + ++GY P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLALSAPILKAIQEQGYDTPSPIQAQAIPAVLEGQDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L A ++ VRALIL+PTRELA Q + V ++ L ST + GG ++ Q +L
Sbjct: 62 LLSKGQKAKSNHVRALILTPTRELAAQIQENVHNYSRYLDLNSTVVFGGVKINPQMMQLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + S ++
Sbjct: 122 KGSDILVATPGRLLDLFNQKAVNFSQLE 149
>gi|313144114|ref|ZP_07806307.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
gi|386761702|ref|YP_006235337.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi PAGU611]
gi|313129145|gb|EFR46762.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
gi|385146718|dbj|BAM12226.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi PAGU611]
gi|396078843|dbj|BAM32219.1| ATP-dependent RNA helicase [Helicobacter cinaedi ATCC BAA-847]
Length = 513
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 92/132 (69%), Gaps = 3/132 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F++FGL VLKG+ + G+ P+P+Q ++IP+VL+G+D++A A+TG+GKTA F IP+L
Sbjct: 19 SFETFGLKDFVLKGIKEAGFSSPSPVQAQSIPIVLQGKDLIAQAQTGTGKTAAFSIPILN 78
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
L + + AL+++PTRELA+Q + V +LG+F ++++ C+ GG S+ Q L
Sbjct: 79 AL---SRNKEIEALVITPTRELAMQISEEVLKLGRFGRIKTICMYGGQSIKRQCDLLEKK 135
Query: 158 PDIVVATPGRFL 169
P +++ATPGR L
Sbjct: 136 PKVMIATPGRLL 147
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
V +IP+VL+G+D++A A+TG+GKTA F
Sbjct: 44 VQAQSIPIVLQGKDLIAQAQTGTGKTAAF 72
>gi|91789374|ref|YP_550326.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91698599|gb|ABE45428.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 579
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 90/151 (59%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L +LK VL++GY PTPIQ + IP VL G D++ A+TG+GKTA F +PML++
Sbjct: 3 FEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPMLQR 62
Query: 99 LKTHA------ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L T + VRALI++PTRELA Q + V+ GK+ L S + GG M Q
Sbjct: 63 LSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQID 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + L LS +Q
Sbjct: 123 KLRRGVDILVATPGRLLDHAGQGTLDLSQVQ 153
>gi|309786547|ref|ZP_07681170.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
1617]
gi|308925610|gb|EFP71094.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
1617]
Length = 449
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 98/146 (67%), Gaps = 4/146 (2%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+ L T
Sbjct: 1 MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60
Query: 102 ---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 61 RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVE 146
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 55
>gi|444375654|ref|ZP_21174907.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
gi|443680157|gb|ELT86804.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
Length = 508
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF GL +L+ + ++GY P+PIQ + IP VLEG+DV+A A+TG+GKTA F++P+LE
Sbjct: 2 GFTDLGLSAPILRAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILE 61
Query: 98 KLKTHAAT--SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L + T + +RALIL+PTRELA Q + + +L+S+ + GG ++ Q L
Sbjct: 62 RLSEGSRTRPNHIRALILTPTRELAAQIHENAVVYSRHLRLRSSVVFGGVKINPQMMNLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + +K S ++
Sbjct: 122 KGTDILVATPGRLLDLYQQNAVKFSQLE 149
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP VLEG+DV+A A+TG+GKTA F+ R G
Sbjct: 31 AIPAVLEGKDVMAAAQTGTGKTAGFVLPILERLSEG 66
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 194 KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
+ +L+S+ + GG ++ Q L DI+VATPGR L + + +K S +++ + D
Sbjct: 98 RHLRLRSSVVFGGVKINPQMMNLRKGTDILVATPGRLLDLYQQNAVKFSQLEVLVLD 154
>gi|443312790|ref|ZP_21042405.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
gi|442777246|gb|ELR87524.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
Length = 432
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL E+LK + ++GY PTPIQ++ IP +L+G+DV A A+TG+GKTA F +P+L+
Sbjct: 3 FSHLGLSQELLKAISEQGYTQPTPIQKQAIPAILQGKDVFASAQTGTGKTAGFTLPLLQL 62
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L +A G RALIL PTRELA Q V+ GK+ L+S + GG ++ Q L
Sbjct: 63 LNNTSANKGDRAPRALILLPTRELAQQVGDSVRTYGKYLSLRSAVIYGGVAIRPQTQTLR 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DIVVATPGR L + + L LS I+
Sbjct: 123 QGVDIVVATPGRLLDHLEQKNLNLSQIE 150
>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
Length = 510
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 92/151 (60%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L E+L+ + +GY PTPIQ + IP +LEGRD++ A+TG+GKTA F +PML
Sbjct: 3 FTELNLTPEILRAIADQGYTDPTPIQTQAIPHILEGRDIMGAAQTGTGKTASFTLPMLNL 62
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L++ A TS +R LIL PTRELA+Q + VK GK+ L+ + GG M+ Q
Sbjct: 63 LQSGANTSASPARHPIRTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQTR 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L A +I+VATPGR L V + + LS ++
Sbjct: 123 ELRAGVEILVATPGRLLDHVQQKAINLSKVE 153
>gi|398407733|ref|XP_003855332.1| hypothetical protein MYCGRDRAFT_99289 [Zymoseptoria tritici IPO323]
gi|339475216|gb|EGP90308.1| hypothetical protein MYCGRDRAFT_99289 [Zymoseptoria tritici IPO323]
Length = 740
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 105/194 (54%), Gaps = 15/194 (7%)
Query: 6 PEDI------EGFEDPTVTISSNDDNGNTGDKKKKMGGG--FQSFGLGFEVLKGVLKRGY 57
P+D+ E ED T N N + K G F + L +LKG+ G+
Sbjct: 187 PDDVAAESGSENGEDAVETEKRNAFFANDSESKNAAPGATAFSTMNLSRPILKGLAAVGF 246
Query: 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA-TSGVRALILSPT 116
PTPIQ KTIP+ LEG+D+V A TGSGKT FLIP+LE+L T+ R +IL PT
Sbjct: 247 NTPTPIQAKTIPVALEGKDLVGGAVTGSGKTGAFLIPILERLLFRPKRTATTRVVILMPT 306
Query: 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 176
RELALQ F K+L FT + +GG + Q +L PDIV+ATPGRF+ +
Sbjct: 307 RELALQCFAVAKKLASFTDITFGQAIGGLNSREQEKQLKLRPDIVIATPGRFI------D 360
Query: 177 LKLSSIQYTFKFVK 190
L+ +S +T V+
Sbjct: 361 LERNSASFTVSTVE 374
>gi|419364204|ref|ZP_13905383.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13E]
gi|378218012|gb|EHX78286.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13E]
Length = 440
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 98/146 (67%), Gaps = 4/146 (2%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+ L T
Sbjct: 1 MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60
Query: 102 ---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 61 RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVE 146
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 22 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 55
>gi|325104434|ref|YP_004274088.1| DEAD/DEAH box helicase [Pedobacter saltans DSM 12145]
gi|324973282|gb|ADY52266.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
12145]
Length = 445
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
M F+ F ++L + + GY PTPIQ K IP +L G+DV+ +A+TG+GKTA +++P
Sbjct: 1 MSKNFEDFKFNRQILNAIEEAGYTQPTPIQEKAIPPILNGQDVLGIAQTGTGKTAAYVLP 60
Query: 95 MLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
M+ KLK A +RALIL+PTRELALQ + VK K+T L+S + GG Q +L
Sbjct: 61 MIMKLK-FAQGDDIRALILAPTRELALQIEENVKIFSKYTDLRSVVVFGGIGPKAQADQL 119
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGRF+ + ++ + +Q+
Sbjct: 120 AKGADILIATPGRFMDLYLDGHIVTKKLQF 149
>gi|222623996|gb|EEE58128.1| hypothetical protein OsJ_09027 [Oryza sativa Japonica Group]
Length = 575
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 134/269 (49%), Gaps = 22/269 (8%)
Query: 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML----EKLKTHAATSGV-R 109
+G++ P+PIQ P +L+GRD + +A TGSGKT F +P L K+ +A GV R
Sbjct: 110 KGFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVRRKMGEKSAKKGVPR 169
Query: 110 ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
L+LSPTRELA Q + E G + S CL GG S Q + L + DIV+ TPGR
Sbjct: 170 VLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPGRMK 229
Query: 170 HIVVEMELKLSSIQYTFKFV-KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPG 228
++ +L+ + + V E G + S CL GG S Q + L + DIV+ TPG
Sbjct: 230 DLIEMGICRLNDVSFVIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPG 289
Query: 229 RFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLVGDSTEM--IHKQRQSVRK------- 279
R ++ +L+ + + D + R+ LD+ G E+ I Q SVR+
Sbjct: 290 RMKDLIEMGICRLNDVSFVVLD---EADRM-LDM-GFEPEVRAILSQTASVRQTVMFSAT 344
Query: 280 WDPAKKKYVQVTDDTIPL--VLEGRDVVA 306
W PA + Q D P+ V+ D+ A
Sbjct: 345 WPPAVHQLAQEFMDPNPIKVVIGSEDLAA 373
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 96/148 (64%), Gaps = 2/148 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL +LK V ++GY P+PIQ+K IP+VL+G+DV+A A+TG+GKTA F +PM+ +
Sbjct: 3 FKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIHR 62
Query: 99 LKTH--AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L + +RAL+L+PTRELA Q + V E K+ ++S + GG + + Q L
Sbjct: 63 LINNPKQGRRKIRALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQVRTLRQ 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI+VATPGR L + + L LS +++
Sbjct: 123 GVDILVATPGRLLDLQNQGLLSLSDVEF 150
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ IP+VL+G+DV+A A+TG+GKTA F R
Sbjct: 27 IQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIHRL 63
>gi|224368898|ref|YP_002603060.1| protein RhlE1 [Desulfobacterium autotrophicum HRM2]
gi|223691615|gb|ACN14898.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
Length = 427
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 117/216 (54%), Gaps = 20/216 (9%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL ++K V +GY+ P+PIQ + IP VL+GRDV+A A+TG+GKT F +P+LE+
Sbjct: 22 FSTLGLSAPIVKAVAGQGYETPSPIQVRAIPAVLKGRDVMAAAQTGTGKTLVFTLPVLER 81
Query: 99 LKTHAATSG--VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A VRAL+L PTRELA+Q + V G+ L+ST + GG ++ Q +L
Sbjct: 82 LSKLAPVQANQVRALVLVPTRELAVQIGESVTTFGRHLHLRSTAVFGGVKINPQMMKLRG 141
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ----------YTFKFVKELGKFTKL---QSTCL 203
D++VATPGR L + + +K ++ F+ ++GK L Q L
Sbjct: 142 GVDVLVATPGRLLDLHSKNAVKFDRLEVLVLDEADRMLNMGFIHDIGKIIALLPNQRQTL 201
Query: 204 LGGDSMDNQ---FAR--LHASPDIVVATPGRFLHIV 234
+ + ++ AR LH +I VA P L I+
Sbjct: 202 MFSATFPDEIRDLARGLLHDPVEISVAPPNSVLKII 237
>gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 571
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 90/151 (59%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L +LK VL++GY PTPIQ + IP VL G D++ A+TG+GKTA F +P+L++
Sbjct: 3 FEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLLQR 62
Query: 99 LKTHA------ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L T + VRALI++PTRELA Q + V+ GK+ L S + GG M Q
Sbjct: 63 LSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQIE 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L DI+VATPGR L + L LS +Q
Sbjct: 123 KLRRGVDILVATPGRLLDHASQGTLDLSQVQ 153
>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|387903185|ref|YP_006333524.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
gi|387578077|gb|AFJ86793.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
Length = 486
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 95/149 (63%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKT-----HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTFYTEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS +
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQKTIDLSDL 151
>gi|330009971|ref|ZP_08306668.1| ATP-dependent RNA helicase RhlE, partial [Klebsiella sp. MS 92-3]
gi|328534645|gb|EGF61216.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
Length = 509
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L++
Sbjct: 61 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQR 120
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 121 LIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 180
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L ++
Sbjct: 181 RGGVDILVATPGRLLDLEHQNAVSLDKVE 209
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP VL+GRD++A A+TG+GKTA F R
Sbjct: 75 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 121
>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
Length = 438
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L + + GY+ PT IQ++ IP +L G+D++A A+TG+GKTA F++P+L+
Sbjct: 9 FNSLGLSAEILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFVLPILQH 68
Query: 99 L-KTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L +T G VRALIL+PTRELA Q + V+ +F +L+S + GG S++ Q +L
Sbjct: 69 LSQTPVVVKGKKPVRALILAPTRELAAQVGQNVRNYSQFLRLKSLVVFGGVSINPQMMKL 128
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L +V + + LS ++
Sbjct: 129 RGGVDILVATPGRLLDLVQQNAVSLSQVE 157
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V+ +F +L+S + GG S++ Q +L DI+VATPGR L +V + + LS +++ +
Sbjct: 101 VRNYSQFLRLKSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLVQQNAVSLSQVEILV 160
Query: 249 TD 250
D
Sbjct: 161 LD 162
>gi|403222212|dbj|BAM40344.1| ATP-dependent RNA helicase [Theileria orientalis strain Shintoku]
Length = 415
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
D T D K G F+ + L E+L G+ ++G++ P+PIQ ++IP+ L G D++A A+
Sbjct: 28 DKRYKTEDVTKTKGSEFEDYFLKRELLMGIFEKGFERPSPIQEESIPVALAGHDILARAK 87
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
G+GKTA F+IP+L+KL T ++ LIL PTRELALQT VKELGK+ ++
Sbjct: 88 NGTGKTAAFVIPLLQKLNTKEG--HIQGLILLPTRELALQTSAVVKELGKYLDVECMVST 145
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFL 169
GG S+ N RL+ I+ TPGR L
Sbjct: 146 GGTSLRNDIMRLYKPVHILCGTPGRIL 172
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 174 EMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 231
E+ L+ S++ VKELGK+ ++ GG S+ N RL+ I+ TPGR L
Sbjct: 121 ELALQTSAV------VKELGKYLDVECMVSTGGTSLRNDIMRLYKPVHILCGTPGRIL 172
>gi|345867959|ref|ZP_08819956.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
gi|344047610|gb|EGV43237.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
Length = 427
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 98/148 (66%), Gaps = 4/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL +LK V K+GY+ P+PIQ+K IP VLEGRDV+A A+TG+GKTA F +P+L+
Sbjct: 3 FKQLGLSDALLKAVSKQGYEKPSPIQQKAIPPVLEGRDVLASAQTGTGKTAGFTLPLLQI 62
Query: 99 LKTHAATS---GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L + TS +RALIL+PTRELA Q + V++ +FT L+S + GG + Q A L+
Sbjct: 63 L-SQTETSRQRPIRALILTPTRELAAQVHENVRQYSEFTDLRSLVIFGGVNQKPQVAALN 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + + L I+
Sbjct: 122 RGVDVLVATPGRLLDLQNQGAICLRKIE 149
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 274 RQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
+Q K P ++K IP VLEGRDV+A A+TG+GKTA F
Sbjct: 18 KQGYEKPSPIQQK-------AIPPVLEGRDVLASAQTGTGKTAGFTLPLL 60
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL +L+ V +GY PTPIQ K IPLVLEG+D++A A+TG+GKTA F +P+L K
Sbjct: 3 FETLGLAAGILRAVEDQGYSTPTPIQAKAIPLVLEGKDLMASAQTGTGKTAGFTLPILHK 62
Query: 99 LKTHAATSG---VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L + G RAL+L+PTRELA Q + + GK+ L++ + GG + Q +L
Sbjct: 63 LASAGRGQGRRPPRALVLTPTRELAAQVAESIATYGKYVPLRTAVVFGGVKIQPQIHKLQ 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L V + + LS ++
Sbjct: 123 RGVDVLVATPGRLLDHVGQRTVDLSQVE 150
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
IPLVLEG+D++A A+TG+GKTA F +
Sbjct: 31 AIPLVLEGKDLMASAQTGTGKTAGFTLPILHKL 63
>gi|29347295|ref|NP_810798.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339194|gb|AAO76992.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
VPI-5482]
Length = 374
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 96/149 (64%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ + +LK + ++GY +PTPIQ K IP+ L +D++ A+TG+GKTA F IP+++
Sbjct: 3 FKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPIIQH 62
Query: 99 L---KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L K S ++ALIL+PTRELALQ + +++ K+T+++ + GG + Q LH
Sbjct: 63 LHLNKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDMLH 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI+VATPGR L ++ + ++L +IQY
Sbjct: 123 KGIDILVATPGRLLDLMNQGHIRLDNIQY 151
>gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 441
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F++ GL E+LK V GY PTP+Q++ IP + GRD++ + TGSGKTA F +P L +
Sbjct: 3 FENLGLAEELLKAVASTGYTTPTPVQQRAIPAAIAGRDLLVSSHTGSGKTAAFTLPALNR 62
Query: 99 L--KTHAATSGVRALILSPTRELALQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLH 155
+ + A SG R L+L+PTRELA Q K V+ GK + L + CL+GG M Q +L
Sbjct: 63 IIDRRPAPGSGPRVLVLTPTRELAQQVEKAVQTYGKALRWLNTACLVGGAPMFAQIKQLQ 122
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D+VVATPGR L + ++KLS ++
Sbjct: 123 RQCDVVVATPGRLLDHLTRRKIKLSDVE 150
>gi|109947876|ref|YP_665104.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
gi|109715097|emb|CAK00105.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
Length = 494
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 86/132 (65%), Gaps = 3/132 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F GL VLK V + G+ P+PIQ K IP VL+GRDV+A A+TG+GKTA F +P++
Sbjct: 23 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 82
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
LK + + AL+++PTRELA+Q + +LGK TK ++ C+ GG S+ Q + +
Sbjct: 83 NLKNNHT---IEALVITPTRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQCEFIKKN 139
Query: 158 PDIVVATPGRFL 169
P +++ATPGR L
Sbjct: 140 PQVMIATPGRLL 151
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 218
+ +V TP R L + + E+ FK LGK TK ++ C+ GG S+ Q +
Sbjct: 91 EALVITPTRELAMQISDEI--------FK----LGKHTKTKTVCVYGGQSVKKQCEFIKK 138
Query: 219 SPDIVVATPGRFL 231
+P +++ATPGR L
Sbjct: 139 NPQVMIATPGRLL 151
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP VL+GRDV+A A+TG+GKTA F
Sbjct: 48 IQEKAIPAVLQGRDVIAQAQTGTGKTAAF 76
>gi|73540602|ref|YP_295122.1| helicase [Ralstonia eutropha JMP134]
gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 537
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+SFGL +L+ + ++GY PTPIQ + IP+VL G+DV+ A+TG+GKTA F +P++++
Sbjct: 56 FESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQR 115
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A+ S VRAL+L+PTRELA Q + V K T L+ST + GG M+ Q
Sbjct: 116 LLPMASASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTD 175
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +I+VATPGR L V + + LS +Q
Sbjct: 176 ALRRGVEILVATPGRLLDHVQQKSVNLSQVQ 206
>gi|423067030|ref|ZP_17055820.1| DEAD/DEAH box helicase domain protein [Arthrospira platensis C1]
gi|406711316|gb|EKD06517.1| DEAD/DEAH box helicase domain protein [Arthrospira platensis C1]
Length = 484
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 97/160 (60%), Gaps = 5/160 (3%)
Query: 25 NGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTG 84
N + GD M F+S G+ + + + G+ PTP+Q + IP +L GRDVV MA+TG
Sbjct: 13 NNHIGDL---MSQSFESLGISEQRARHLETLGFTEPTPVQVQAIPEMLSGRDVVGMAQTG 69
Query: 85 SGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGG 144
+GKTA F +P+LE++ HAA G++AL+L+PTRELA+Q + ++ L + GG
Sbjct: 70 TGKTAAFSLPILEQIDVHAA--GIQALVLTPTRELAMQVKEAIRNFSDDNALYVLTVYGG 127
Query: 145 DSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
S+D Q RL +VV TPGR L ++ ELKL +++
Sbjct: 128 QSIDRQIQRLRRGVQVVVGTPGRILDLLNRGELKLDLLRW 167
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 288 VQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
VQV IP +L GRDVV MA+TG+GKTA F + D
Sbjct: 48 VQV--QAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQID 85
>gi|423687487|ref|ZP_17662290.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
gi|371493270|gb|EHN68873.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
Length = 500
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK V ++GY P+PIQ + IP V+EG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 98 KLKTHAAT--SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L + VRAL+L+PTRELA Q + V++ K L S + GG ++ Q RL
Sbjct: 62 RLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +K ++
Sbjct: 122 RGVDVLVATPGRLLDLANQNAIKFDQLE 149
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP V+EG+DV+A A+TG+GKTA F R G
Sbjct: 31 AIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSNG 66
>gi|383786573|ref|YP_005471142.1| DNA/RNA helicase [Fervidobacterium pennivorans DSM 9078]
gi|383109420|gb|AFG35023.1| DNA/RNA helicase, superfamily II [Fervidobacterium pennivorans DSM
9078]
Length = 548
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIP 94
G GF+ FGL E L + K+GY PT IQ+ +P+ LE +D++A A+TG+GKTA F IP
Sbjct: 13 GSGFEVFGLSKETLSAIEKKGYTQPTEIQKLVLPVALETDKDIIAQAQTGTGKTAAFAIP 72
Query: 95 MLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
+LE L ++ALI++PTRELALQ ++ +K L +++ + GG SM+ Q L
Sbjct: 73 ILE-LVDFKVDKSIKALIVTPTRELALQIYEEIKSLKGNRRIKVATVYGGQSMERQLKDL 131
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DIVV TPGR L + L LS+++Y
Sbjct: 132 ARGIDIVVGTPGRLLDHINRKTLDLSNVKY 161
>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
Length = 480
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 96/149 (64%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKT-----HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T +A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS +
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQKTIDLSDL 151
>gi|390950354|ref|YP_006414113.1| DNA/RNA helicase [Thiocystis violascens DSM 198]
gi|390426923|gb|AFL73988.1| DNA/RNA helicase, superfamily II [Thiocystis violascens DSM 198]
Length = 453
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
M F F L +L+G+ GY+ PTP+Q + IPL ++G D++ A TGSGKTA FL+P
Sbjct: 1 MNAHFSEFLLPDALLRGLASEGYETPTPVQSQVIPLAMDGADLLVSAATGSGKTAAFLLP 60
Query: 95 MLEK-LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
++++ L A G RALIL PTRELA Q + LG FT+L + + GG+S +Q A
Sbjct: 61 IMQRFLAVPAHAGGTRALILLPTRELARQIYIHFMRLGSFTRLTAGVITGGESKAHQIAT 120
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L +P+I+VATPGR L ++ + L ++
Sbjct: 121 LRKNPEILVATPGRMLELLQSGQADLRDLE 150
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
V IPL ++G D++ A TGSGKTA FL RF
Sbjct: 29 VQSQVIPLAMDGADLLVSAATGSGKTAAFLLPIMQRF 65
>gi|171059329|ref|YP_001791678.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170776774|gb|ACB34913.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 90/152 (59%), Gaps = 6/152 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL +L+ V + GY IPTPIQ + IP VL G D++A A+TG+GKTA F +P+L K
Sbjct: 3 FDDLGLAQPILRAVHEEGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPLLHK 62
Query: 99 L------KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L K +RALIL+PTRELA Q + V+ GK+ +L S + GG M Q
Sbjct: 63 LAAGEPVKNRNGRPAIRALILTPTRELAAQVEESVRTYGKYLQLTSMVIFGGVGMGPQVD 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
RL DI+VATPGR L + + LS +Q+
Sbjct: 123 RLRKGVDILVATPGRLLDHHQQGTIDLSQVQF 154
>gi|85000347|ref|XP_954892.1| ATP-dependent (RNA) helicase [Theileria annulata strain Ankara]
gi|65303038|emb|CAI75416.1| ATP-dependent (RNA) helicase, putative [Theileria annulata]
Length = 811
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 5/153 (3%)
Query: 37 GGFQSFGLGFEVLKGVLKR-GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPM 95
G F + GL + + K+ Y P+ IQR+TIP VL G DVV +ARTGSGKT ++ P+
Sbjct: 9 GSFGTLGLNKPICLTLQKKFRYDQPSAIQRRTIPHVLAGSDVVCIARTGSGKTVAYISPI 68
Query: 96 LEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK----LQSTCLLGGDSMDNQF 151
++ L+ H++ GVR LIL PTRELALQ +K+ F+ L+ L+GG S+++QF
Sbjct: 69 VQLLEAHSSVVGVRCLILLPTRELALQVEGVLKKFVNFSNQSDALRVVLLIGGKSVESQF 128
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L +PDIV+ATPGR ++ + + L LS + +
Sbjct: 129 GALSFNPDIVIATPGRLVYHLEQKSLSLSLVTH 161
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
TIP VL G DVV +ARTGSGKT ++
Sbjct: 40 TIPHVLAGSDVVCIARTGSGKTVAYI 65
>gi|402565565|ref|YP_006614910.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402246762|gb|AFQ47216.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 489
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 96/149 (64%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKT-----HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T A +RALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTFYAEHRGAKRAIRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS++
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQKTIDLSNL 151
>gi|23013512|ref|ZP_00053398.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 311
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GLG E+LK + + GY PTPIQ + IP+VL GRDV+ A+TG+GKTA F +PM+E
Sbjct: 20 FEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIEI 79
Query: 99 LKTHAATSGV-RALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
L A + + R+LIL+PTRELA Q + + GK+ L+ ++GG+SM +Q A L
Sbjct: 80 LAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVALLDRG 139
Query: 158 PDIVVATPGRFLHI 171
D+++ATPGR L +
Sbjct: 140 VDVLIATPGRLLDM 153
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 193 GKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
GK+ L+ ++GG+SM +Q A L D+++ATPGR L + + L+ +++ + D
Sbjct: 113 GKYHPLKKALIIGGESMSDQVALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVID 170
>gi|339998715|ref|YP_004729598.1| ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC 12419]
gi|339512076|emb|CCC29797.1| putative ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC
12419]
Length = 451
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ + +GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLHPDILRAIAGQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFSLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + +++ ++ ++S + GG S++ Q +L
Sbjct: 63 LITQQPHAKGRRPVRALILTPTRELAAQIGENIRDYSQYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP VLEGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGF 55
>gi|262041112|ref|ZP_06014330.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041562|gb|EEW42615.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 519
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY PTPIQ++ IP VL+GRD++A A+TG+GKTA F +P+L++
Sbjct: 71 FDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQR 130
Query: 99 L---KTHA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L + HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 131 LIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 190
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + + L ++
Sbjct: 191 RGGVDILVATPGRLLDLEHQNAVSLDKVE 219
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 283 AKKKYVQVT---DDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
A++ YV+ T IP VL+GRD++A A+TG+GKTA F R
Sbjct: 85 AEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 131
>gi|406604396|emb|CCH44161.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 570
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 2/156 (1%)
Query: 17 VTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD 76
++I D T D K G F+ F L ++L G+ + G++ P+PIQ ++IP+ L GRD
Sbjct: 9 LSIPEKDTRPQTEDVTKTKGNSFEDFYLSRKLLMGIFEAGFEKPSPIQEESIPVALAGRD 68
Query: 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136
++A A+ G+GKTA F+IP+LEK+K + ++ALIL PTRELALQT + VK LGK +
Sbjct: 69 ILARAKNGTGKTASFIIPVLEKIKPNV--DQIQALILLPTRELALQTSQVVKTLGKRLDV 126
Query: 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 172
+ GG S+ + RL +++V TPGR L +
Sbjct: 127 KVMVSTGGTSLRDDIVRLEEPVNVLVGTPGRILDLA 162
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFL 319
+ +++IP+ L GRD++A A+ G+GKTA F+
Sbjct: 55 IQEESIPVALAGRDILARAKNGTGKTASFI 84
>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
Length = 480
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 96/149 (64%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKT-----HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T +A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS +
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQKTIDLSDL 151
>gi|451971488|ref|ZP_21924707.1| ATP-dependent RNA helicase [Vibrio alginolyticus E0666]
gi|451932641|gb|EMD80316.1| ATP-dependent RNA helicase [Vibrio alginolyticus E0666]
Length = 522
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK + ++GY P+PIQ K IP +LEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L + + VRALIL+PTRELA Q + V + L S + GG ++ Q RL
Sbjct: 62 RLSNGSRVRANQVRALILTPTRELAAQVQENVFMYSRHLPLSSAVVFGGVKINPQMQRLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K ++
Sbjct: 122 KGADVLVATPGRLMDLYNQNAVKFDQLE 149
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP +LEG+DV+A A+TG+GKTA F R G
Sbjct: 31 AIPAILEGKDVMAAAQTGTGKTAGFTLPILERLSNG 66
>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 480
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 96/149 (64%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKT-----HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T +A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS +
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQKTIDLSDL 151
>gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
Length = 522
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 91/148 (61%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF S GL +LK + ++GY P+PIQ K IP +LEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 2 GFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 98 KLKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L + VRALIL+PTRELA Q + V + L S + GG ++ Q RL
Sbjct: 62 RLSNGPRVRANQVRALILTPTRELAAQVQENVFMYSRHLPLNSAVVFGGVKINPQMQRLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR + + + +K ++
Sbjct: 122 KGADVLVATPGRLMDLYNQNAVKFDQLE 149
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP +LEG+DV+A A+TG+GKTA F R G
Sbjct: 31 AIPAILEGKDVMAAAQTGTGKTAGFTLPILERLSNG 66
>gi|419936281|ref|ZP_14453298.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli 576-1]
gi|388401496|gb|EIL62137.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli 576-1]
Length = 146
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 94/137 (68%), Gaps = 4/137 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP V+EGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKT---HA-ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T HA VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHI 171
D++VATPGR L +
Sbjct: 123 RGGVDVLVATPGRLLDL 139
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ IP V+EGRD++A A+TG+GKTA F
Sbjct: 27 IQQQAIPAVMEGRDLMASAQTGTGKTAGF 55
>gi|448746637|ref|ZP_21728302.1| DEAD-like helicase [Halomonas titanicae BH1]
gi|445565565|gb|ELY21674.1| DEAD-like helicase [Halomonas titanicae BH1]
Length = 418
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL ++L+ V +GY PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +PML++
Sbjct: 3 FSELGLHADLLRAVTAQGYTEPTPIQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQR 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T VRAL+L+PTRELA Q + V G+ L+S + GG Q L A
Sbjct: 63 LNTGKRPTKRQVRALVLTPTRELAAQVGESVSTYGQHLALRSHIIFGGVGQQPQIDALKA 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + + LS ++
Sbjct: 123 GLDVLVATPGRLLDLHQQGHVDLSCVE 149
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+ IP+VLEGRD++A A+TG+GKTA F R + G
Sbjct: 27 IQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQRLNTG 66
>gi|160898343|ref|YP_001563925.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363927|gb|ABX35540.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 598
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L +LK VL+ GY+ PTPIQ + IP VL G D++A A+TG+GKTA F +PML++
Sbjct: 3 FEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLQR 62
Query: 99 L------KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L + G+RAL+L+PTRELA Q + V+ K+ + ST + GG M Q
Sbjct: 63 LSQGQVPRNKFGGKGIRALVLTPTRELAAQVEESVRSYAKYLDINSTVIFGGVGMKPQID 122
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
R+ DI+VATPGR L + + + LS+++
Sbjct: 123 RIKKGVDILVATPGRLLDLQQQGFMDLSTVE 153
>gi|329905919|ref|ZP_08274297.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
IMCC9480]
gi|327547410|gb|EGF32236.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
IMCC9480]
Length = 446
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 95/152 (62%), Gaps = 7/152 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL ++++ V + GY IPTPIQ + IP VL G D++A A+TG+GKTA F +P+L +
Sbjct: 3 FAQLGLSADIVRAVTEHGYTIPTPIQAQAIPAVLLGGDLLAGAQTGTGKTAGFTLPLLHR 62
Query: 99 LKT-------HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
L T + AT +RALIL+PTRELA Q + V+ GK+ KL ST + GG ++ Q
Sbjct: 63 LSTSTSAPTTNTATRPIRALILAPTRELAAQVEESVRTYGKYLKLTSTVIFGGVGINPQI 122
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L DI+VATPGR L + + + LS ++
Sbjct: 123 KMLKHGVDILVATPGRLLDHMGQGTVNLSQVE 154
>gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99]
gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
Length = 491
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 87/132 (65%), Gaps = 3/132 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F GL VLK V + G+ P+PIQ K IP VL+GRDV+A A+TG+GKTA F +P++
Sbjct: 21 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 80
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
LK + ++AL+++PTRELA+Q + +LGK T+ ++ C+ GG S+ Q + +
Sbjct: 81 NLKNNHT---IKALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137
Query: 158 PDIVVATPGRFL 169
P +++ATPGR L
Sbjct: 138 PQVMIATPGRLL 149
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+ + IP VL+GRDV+A A+TG+GKTA F
Sbjct: 46 IQEKAIPAVLQGRDVIAQAQTGTGKTAAF 74
>gi|426401500|ref|YP_007020472.1| DEAD/DEAH box helicase [Candidatus Endolissoclinum patella L2]
gi|425858168|gb|AFX99204.1| DEAD/DEAH box helicase family protein [Candidatus Endolissoclinum
patella L2]
Length = 493
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 85/138 (61%), Gaps = 4/138 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
F + GL V++ VL GY PTPIQ K IPL+LEGRDVVA+A+TG+GKTA FL+P+L
Sbjct: 10 NFNALGLAKAVIQAVLSEGYDAPTPIQVKAIPLILEGRDVVAVAQTGTGKTAAFLLPLLS 69
Query: 98 KLKTH---AATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
KL A R L+LSPTRELA Q K V GK L+ST ++GG Q +
Sbjct: 70 KLDQAGRIAKPKCTRVLVLSPTRELATQIHKAVLIYGKKLHLRSTVIIGGAKSCVQIRKC 129
Query: 155 HASPDIVVATPGRFL-HI 171
D +VATPGR L HI
Sbjct: 130 APGVDFLVATPGRLLDHI 147
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IPL+LEGRDVVA+A+TG+GKTA FL + D+
Sbjct: 40 IPLILEGRDVVAVAQTGTGKTAAFLLPLLSKLDQA 74
>gi|269139672|ref|YP_003296373.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
gi|387868228|ref|YP_005699697.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda FL6-60]
gi|267985333|gb|ACY85162.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
gi|304559541|gb|ADM42205.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda FL6-60]
Length = 440
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL E+L+ V ++GY+ PTPIQ++ IPLVL+ RD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLCAELLRAVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLLQL 62
Query: 99 L----KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L K VRALIL+PTRELA Q + V+E + L+S + GG S++ Q +L
Sbjct: 63 LHQNPKNGKGRRPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + + LS ++
Sbjct: 123 RGGVDVLVATPGRLLDLAHQNAVDLSQVE 151
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 87/135 (64%), Gaps = 2/135 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL +LK V ++GY P+PIQ + IP VLEG+DV+A A+TG+GKTA F +P+LE
Sbjct: 3 FTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L A VRAL+L+PTRELA Q + V+ GK L+S + GG + Q ++L
Sbjct: 63 LSRGKRAPAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKLGK 122
Query: 157 SPDIVVATPGRFLHI 171
DI+VATPGR L +
Sbjct: 123 GVDILVATPGRLLDL 137
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
IP VLEG+DV+A A+TG+GKTA F RG
Sbjct: 31 AIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSRG 66
>gi|452986589|gb|EME86345.1| hypothetical protein MYCFIDRAFT_202484 [Pseudocercospora fijiensis
CIRAD86]
Length = 756
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 88/142 (61%), Gaps = 5/142 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
K F S L ++LKG+ G+ PTPIQ KTIP+ LEG+D+V A TGSGKTA FL
Sbjct: 230 KATATAFHSMNLSRQILKGLAAVGFDKPTPIQAKTIPVALEGKDLVGGAVTGSGKTAAFL 289
Query: 93 IPMLEKL---KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
IP+LE+L +AAT+ R IL PTRELALQ F K+L T + +GG +
Sbjct: 290 IPILERLLYRPRNAATT--RVAILMPTRELALQCFNVAKKLAAHTDITFGQAIGGLNSRE 347
Query: 150 QFARLHASPDIVVATPGRFLHI 171
Q +L PDIV+ATPGRF+ +
Sbjct: 348 QEKQLKLRPDIVIATPGRFIDL 369
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP+ LEG+D+V A TGSGKTA FL R
Sbjct: 264 TIPVALEGKDLVGGAVTGSGKTAAFLIPILERL 296
>gi|350572246|ref|ZP_08940551.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
gi|349790502|gb|EGZ44411.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
Length = 457
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GLG E++ + ++GY+ PTPIQ IP L G D++A A+TG+GKTA F++P LE+
Sbjct: 4 FSALGLGGEIVSALTEQGYETPTPIQEAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
LK +A S VR L+L+PTRELA Q + V+ K L+ T L GG SMD Q A
Sbjct: 64 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVSMDKQTA 123
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L A +IVVAT GR L V + + L+ ++
Sbjct: 124 ELRAGCEIVVATVGRLLDHVKQKNINLNKVE 154
>gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster
bacterium]
Length = 434
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF GL +LK V ++GY P+PIQ K+IP+VL+G+D++A A+TG+GKTA F +P+L+
Sbjct: 2 GFSKLGLSDSILKAVKQQGYDKPSPIQEKSIPIVLDGKDLMAAAQTGTGKTAGFTLPILQ 61
Query: 98 KLKTHAATSG--VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L T+ VR LIL+PTRELA Q V GK L+ST + GG ++ Q +L
Sbjct: 62 LLSKGKPTNSNQVRTLILTPTRELAAQVQDSVATYGKHLPLKSTVVFGGVKINPQMKKLR 121
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + +K ++
Sbjct: 122 GGVDILVATPGRLLDLYSQNAVKFDQLE 149
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+ + +IP+VL+G+D++A A+TG+GKTA F +G
Sbjct: 27 IQEKSIPIVLDGKDLMAAAQTGTGKTAGFTLPILQLLSKG 66
>gi|359396764|ref|ZP_09189815.1| ATP-dependent RNA helicase rhlE [Halomonas boliviensis LC1]
gi|357969442|gb|EHJ91890.1| ATP-dependent RNA helicase rhlE [Halomonas boliviensis LC1]
Length = 418
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 93/147 (63%), Gaps = 2/147 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL ++L+ V +GY PTPIQR+ IP+VLEGRD++A A+TG+GKTA F +PML++
Sbjct: 3 FSELGLHADLLRAVTAQGYTEPTPIQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQR 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L T A VRAL+L+PTRELA Q + V G+ L+S + GG Q L A
Sbjct: 63 LNTGKRPAKRQVRALVLTPTRELAAQVGESVFTYGQHLALRSHIIFGGVGQQPQIDALKA 122
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + + LS ++
Sbjct: 123 GLDVLVATPGRLLDLHQQGHVDLSCVE 149
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+ IP+VLEGRD++A A+TG+GKTA F R + G
Sbjct: 27 IQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQRLNTG 66
>gi|388854481|emb|CCF51868.1| related to DRS1-RNA helicase of the DEAD box family [Ustilago
hordei]
Length = 935
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 101/177 (57%), Gaps = 11/177 (6%)
Query: 13 EDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL 72
E+PT TIS + + T F SF L +L+ + + PTPIQ +TIP+ L
Sbjct: 307 EEPTTTISKSKSSATTD-----ADSSFTSFQLSRPLLRALTTLSFHKPTPIQSRTIPIAL 361
Query: 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAAT-----SGVRALILSPTRELALQTFKFV 127
G+D+VA A TGSGKTA F+IP +E+L A + + R LIL+PTRELA+Q +
Sbjct: 362 AGKDIVAGAVTGSGKTAAFMIPTIERLTWRAKSRTPLQAKSRVLILAPTRELAIQCYSVG 421
Query: 128 KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELKLSSIQ 183
K + KFT ++ +GG S+ +Q A L P++V+ATPGR + H+ L I+
Sbjct: 422 KNIAKFTDIRFCLCVGGLSVKSQEAELKLRPEVVIATPGRLIDHVRNSASFTLDDIE 478
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
TIP+ L G+D+VA A TGSGKTA F+ R
Sbjct: 356 TIPIALAGKDIVAGAVTGSGKTAAFMIPTIERL 388
>gi|253997010|ref|YP_003049074.1| DEAD/DEAH box helicase [Methylotenera mobilis JLW8]
gi|253983689|gb|ACT48547.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
Length = 502
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML-- 96
F S GL +L+ + GY PTPIQ IPLVL G D++A A+TG+GKTA F +P+L
Sbjct: 11 FDSLGLSEPILRAINDAGYSAPTPIQANAIPLVLSGGDLLAGAQTGTGKTAGFTLPILHL 70
Query: 97 --EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
+K + AA S R L+LSPTRELA Q + VK GK L ST + GG + + Q ARL
Sbjct: 71 LSKKPRAEAAASRPRCLMLSPTRELAAQIEESVKTYGKHLPLTSTVIFGGVNANPQIARL 130
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
DI+VATPGR L + + LS I+
Sbjct: 131 KKPLDILVATPGRLLDHANQKNVDLSGIE 159
>gi|126654509|ref|XP_001388425.1| ATP-dependent RNA helicase [Cryptosporidium parvum Iowa II]
gi|126117365|gb|EAZ51465.1| ATP-dependent RNA helicase, putative [Cryptosporidium parvum Iowa
II]
Length = 406
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 17 VTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD 76
+ I D T D K G F+ + L E+L G+ ++G++ P+PIQ ++IP+ L G+D
Sbjct: 13 LNIPPKDPRFKTDDVTKTKGSDFEDYFLKRELLMGIYEKGFERPSPIQEESIPVALAGKD 72
Query: 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136
++A A+ G+GKTA F+IP+LEK+ T ++ LIL PTRELALQT VK+LGK +
Sbjct: 73 ILARAKNGTGKTAAFVIPLLEKINTKKNI--IQGLILVPTRELALQTSSIVKQLGKHINV 130
Query: 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
Q GG S+ + RL+ ++V TPGR L
Sbjct: 131 QCMVSTGGTSLRDDILRLNNPVHVLVGTPGRIL 163
>gi|124265824|ref|YP_001019828.1| ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1]
gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
PM1]
Length = 494
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 94/152 (61%), Gaps = 6/152 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + L ++L+ V + GY + TPIQ K IPLVL GRDV+ A+TG+GKTA F +P+L+K
Sbjct: 21 FDTLALDPKLLRAVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQK 80
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
+ H ++S VRAL+L+PTRELA Q VK K T+L++T + GG M Q A
Sbjct: 81 MLKHESSSTSPARHPVRALVLAPTRELADQVANNVKTYSKHTQLRATVVFGGIDMKPQTA 140
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L ++++ATPGR L + LS ++Y
Sbjct: 141 ELKRGVEVLIATPGRLLDHIEAKNCSLSQVEY 172
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
IPLVL GRDV+ A+TG+GKTA F
Sbjct: 49 AIPLVLAGRDVMGAAQTGTGKTAAF 73
>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
Length = 509
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 95/145 (65%), Gaps = 3/145 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+ + + G++ TPIQ +TIP+ LEG+DV A+TG+GKTA F +P+LEK
Sbjct: 3 FNEMNLSKPLLRAIEEMGFEEATPIQAQTIPMALEGKDVFGQAQTGTGKTAAFGLPLLEK 62
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+ T GV+ALI+ PTRELA+QT + + LGKF + +T + GG S+ +Q L +P
Sbjct: 63 VH---ETGGVQALIIEPTRELAVQTGEELYRLGKFKGIHTTTVYGGASIGHQIKLLKKNP 119
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
+V+ TPGR L ++ LKL++++
Sbjct: 120 PVVIGTPGRILDLIKRGVLKLNNVE 144
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 192 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
LGKF + +T + GG S+ +Q L +P +V+ TPGR L ++ LKL++++ + D
Sbjct: 91 LGKFKGIHTTTVYGGASIGHQIKLLKKNPPVVIGTPGRILDLIKRGVLKLNNVETLVLD 149
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
TIP+ LEG+DV A+TG+GKTA F
Sbjct: 31 TIPMALEGKDVFGQAQTGTGKTAAF 55
>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
Length = 522
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ L E+LK V + G++ TPIQ +TIPL L GRDV+ A+TG+GKTA F +PMLEK
Sbjct: 3 FKELELSPELLKAVERSGFEEATPIQSETIPLALSGRDVIGQAQTGTGKTAAFGLPMLEK 62
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+ T ++S ++ L++SPTRELA+QT + + LGK K++ + GG + Q +L P
Sbjct: 63 IDT--SSSHLQGLVISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIRQLKDRP 120
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
IVV TPGR L + LKL +++
Sbjct: 121 HIVVGTPGRMLDHINRHTLKLETVE 145
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327
+ +TIPL L GRDV+ A+TG+GKTA F + D
Sbjct: 27 IQSETIPLALSGRDVIGQAQTGTGKTAAFGLPMLEKID 64
>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 486
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 95/149 (63%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S GL ++K V + GY PTPIQ++ IP VL G D++A A+TG+GKTA F +P+L++
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 99 LKT-----HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L T A VRALIL+PTRELA Q + V+ K+ KL+ST + GG S++ Q
Sbjct: 63 LHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDA 122
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
L DIVVATPGR L + + + LS +
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQKTIDLSDL 151
>gi|344304932|gb|EGW35164.1| RNA helicase of DEAD box family [Spathaspora passalidarum NRRL
Y-27907]
Length = 517
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Query: 16 TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR 75
+ + + D T D G F+ F L E+L G+ + G++ P+PIQ ++IP+ L GR
Sbjct: 9 NLNLPAKDTRPQTEDVLNTKGKSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGR 68
Query: 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
D++A A+ G+GKTA F+IP L+++K S ++ALIL PTRELALQT + V+ LGK
Sbjct: 69 DILARAKNGTGKTASFVIPCLQQVK--PKVSKIQALILVPTRELALQTSQVVRTLGKHLA 126
Query: 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSS 181
+Q GG S+ + RL+ ++V TPGR L + + LS
Sbjct: 127 IQCMVTTGGTSLRDDIVRLNDPVHVLVGTPGRVLDLAARKVVDLSE 172
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTACFL 319
+ +++IP+ L GRD++A A+ G+GKTA F+
Sbjct: 56 IQEESIPMALAGRDILARAKNGTGKTASFV 85
>gi|159114905|ref|XP_001707676.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
gi|157435783|gb|EDO80002.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
Length = 625
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
+Q L ++ + VL+ G+K PT +Q K IP+VL GRD + A TGSGKT F IP+LE
Sbjct: 2 SWQGLSLSRQLTRAVLRLGWKFPTTVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLLE 61
Query: 98 KLKTHAA-TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
++ T G ALILSPTRELA QT ++EL FT + L+GG Q A+L
Sbjct: 62 RMILRGRDTYGTTALILSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTAKQAAQLRT 121
Query: 157 SPDIVVATPGRFLHIV 172
PDI+VATPGR + +V
Sbjct: 122 EPDIIVATPGRLIDLV 137
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 234
T ++EL FT + L+GG Q A+L PDI+VATPGR + +V
Sbjct: 88 TAAVLQELAYFTNFRVYLLIGGTDTAKQAAQLRTEPDIIVATPGRLIDLV 137
>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 493
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F SFGL +VL+ + + GY PTPIQ IP+V GRDV+ A+TG+GKTA F +P++
Sbjct: 15 FDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTAGFSLPIIHN 74
Query: 99 LKTHAATSG------VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L A TS VRALIL+PTRELA Q + V + K+T L+S + GG M+ Q
Sbjct: 75 LLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 134
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+L +I+VATPGR L V + + LS ++
Sbjct: 135 QLRRGVEILVATPGRLLDHVQQRSVNLSQVR 165
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,231,537,324
Number of Sequences: 23463169
Number of extensions: 214997859
Number of successful extensions: 651025
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 24009
Number of HSP's successfully gapped in prelim test: 3931
Number of HSP's that attempted gapping in prelim test: 541242
Number of HSP's gapped (non-prelim): 79730
length of query: 333
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 190
effective length of database: 9,003,962,200
effective search space: 1710752818000
effective search space used: 1710752818000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)