BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18032
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 87/133 (65%), Gaps = 2/133 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L E+L G+ + G++ P+PIQ + IP+ + GRD++A A+ G+GKTA F+IP LEK
Sbjct: 23 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 82
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+K + ++ALI+ PTRELALQT + V+ LGK + GG ++ + RL+ +
Sbjct: 83 VK--PKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETV 140
Query: 159 DIVVATPGRFLHI 171
I+V TPGR L +
Sbjct: 141 HILVGTPGRVLDL 153
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTA 316
+ ++ IP+ + GRD++A A+ G+GKTA
Sbjct: 47 IQEEAIPVAITGRDILARAKNGTGKTA 73
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 88/134 (65%), Gaps = 3/134 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F F L + LKG+ + Y++ T IQ++TI L L+G+DV+ A+TGSGKT FL+P+LE
Sbjct: 27 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 86
Query: 99 LK--THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L +T G+ LI+SPTRELA QTF+ ++++GK + ++GG + ++ R++
Sbjct: 87 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN- 145
Query: 157 SPDIVVATPGRFLH 170
+ +I+V TPGR L
Sbjct: 146 NINILVCTPGRLLQ 159
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 289 QVTDDTIPLVLEGRDVVAMARTGSGKT 315
++ TI L L+G+DV+ A+TGSGKT
Sbjct: 50 EIQKQTIGLALQGKDVLGAAKTGSGKT 76
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 92/148 (62%), Gaps = 7/148 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ + L E+L G+ + G++ P+PIQ ++IP+ L GRD++A A+ G+GK+ +LIP+LE+
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 64
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKF---TKLQSTCLLGGDSMDNQFARLH 155
L ++A+++ PTRELALQ + ++ K K+ +T GG ++ + RL
Sbjct: 65 LDLK--KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATT--GGTNLRDDIMRLD 120
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQ 183
+ +V+ATPGR L ++ + K+ +Q
Sbjct: 121 DTVHVVIATPGRILDLIKKGVAKVDHVQ 148
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTAC 317
+ +++IP+ L GRD++A A+ G+GK+
Sbjct: 29 IQEESIPIALSGRDILARAKNGTGKSGA 56
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 80/128 (62%), Gaps = 3/128 (2%)
Query: 48 VLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKL--KTHAAT 105
++ V K GYKIPTPIQ+ +IP++ GRD++A A+TGSGKTA FL+P+L KL H
Sbjct: 67 IIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELE 126
Query: 106 SG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVAT 164
G + +I+SPTRELA+Q F ++ + L+ + GG S +Q + +V+AT
Sbjct: 127 LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIAT 186
Query: 165 PGRFLHIV 172
PGR L V
Sbjct: 187 PGRLLDFV 194
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTAC 317
+IP++ GRD++A A+TGSGKTA
Sbjct: 86 SIPVISSGRDLMACAQTGSGKTAA 109
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L + +L Y+ PTPIQ+ IP +LE RD++A A+TGSGKTA FLIP++
Sbjct: 25 FDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH 84
Query: 99 L-------KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
L + ++ T+ + LIL+PTRELA+Q ++ T L+S + GG +Q
Sbjct: 85 LVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI 144
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ ++VATPGR + + + ++ L +Y
Sbjct: 145 REVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 177
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTA 316
+ + IP +LE RD++A A+TGSGKTA
Sbjct: 49 IQKNAIPAILEHRDIMACAQTGSGKTA 75
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 5/147 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR-DVVAMARTGSGKTACFLIPMLE 97
F L +L + +G++ PT IQ K IPL L ++VA ARTGSGKTA F IP++E
Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
+ + +G+ A+IL+PTRELA+Q ++ L L+ + GG ++ Q L +
Sbjct: 68 LVNEN---NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-N 123
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQY 184
+IVV TPGR L + L L +++Y
Sbjct: 124 ANIVVGTPGRILDHINRGTLNLKNVKY 150
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 295 IPLVLEGR-DVVAMARTGSGKTA 316
IPL L ++VA ARTGSGKTA
Sbjct: 37 IPLFLNDEYNIVAQARTGSGKTA 59
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL ++L+G+ G++ P+ IQ++ I +++GRDV+A +++G+GKTA F + +L+
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L + +ALIL+PTRELA+Q K + LG + +QS +GG ++ +L
Sbjct: 63 LDIQVRET--QALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQ 120
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
+V TPGR ++ L+ +I+
Sbjct: 121 HVVAGTPGRVFDMIRRRSLRTRAIK 145
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 192 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
LG + +QS +GG ++ +L +V TPGR ++ L+ +I++ + D
Sbjct: 92 LGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 150
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 295 IPLVLEGRDVVAMARTGSGKTA 316
I +++GRDV+A +++G+GKTA
Sbjct: 32 IKQIIKGRDVIAQSQSGTGKTA 53
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L E+L+ + RG PTPIQ +PL LEG+D++ ARTG+GKT F +P+ E+
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 99 LK-THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
L + RAL+L+PTRELALQ + + K+ + GG Q L
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKV--VAVYGGTGYGKQKEALLRG 120
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
D VVATPGR L + + L LS ++
Sbjct: 121 ADAVVATPGRALDYLRQGVLDLSRVE 146
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKT 315
+PL LEG+D++ ARTG+GKT
Sbjct: 31 ALPLALEGKDLIGQARTGTGKT 52
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL ++L+G+ G++ P+ IQ++ I +++GRDV+A +++G+GKTA F I +L+
Sbjct: 39 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 98
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L + +ALIL+PTRELA+Q K + LG + +Q +GG ++ +L
Sbjct: 99 LDIQVRET--QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 156
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
+V TPGR ++ L+ +I+
Sbjct: 157 HVVAGTPGRVFDMIRRRSLRTRAIK 181
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 192 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
LG + +Q +GG ++ +L +V TPGR ++ L+ +I++ + D
Sbjct: 128 LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 295 IPLVLEGRDVVAMARTGSGKTA 316
I +++GRDV+A +++G+GKTA
Sbjct: 68 IKQIIKGRDVIAQSQSGTGKTA 89
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL ++L+G+ G++ P+ IQ++ I +++GRDV+A +++G+GKTA F I +L+
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L + +ALIL+PTRELA+Q K + LG + +Q +GG ++ +L
Sbjct: 100 LDIQVRET--QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 157
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
+V TPGR ++ L+ +I+
Sbjct: 158 HVVAGTPGRVFDMIRRRSLRTRAIK 182
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 192 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
LG + +Q +GG ++ +L +V TPGR ++ L+ +I++ + D
Sbjct: 129 LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 187
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 295 IPLVLEGRDVVAMARTGSGKTA 316
I +++GRDV+A +++G+GKTA
Sbjct: 69 IKQIIKGRDVIAQSQSGTGKTA 90
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL ++L+G+ G++ P+ IQ++ I +++GRDV+A +++G+GKTA F I +L+
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L + +ALIL+PTRELA+Q K + LG + +Q +GG ++ +L
Sbjct: 100 LDIQVRET--QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 157
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
+V TPGR ++ L+ +I+
Sbjct: 158 HVVAGTPGRVFDMIRRRSLRTRAIK 182
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 192 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
LG + +Q +GG ++ +L +V TPGR ++ L+ +I++ + D
Sbjct: 129 LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 187
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 295 IPLVLEGRDVVAMARTGSGKTA 316
I +++GRDV+A +++G+GKTA
Sbjct: 69 IKQIIKGRDVIAQSQSGTGKTA 90
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL ++L+G+ G++ P+ IQ++ I +++GRDV+A +++G+GKTA F I +L+
Sbjct: 18 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 77
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L + +ALIL+PTRELA+Q K + LG + +Q +GG ++ +L
Sbjct: 78 LDIQVRET--QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 135
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
+V TPGR ++ L+ +I+
Sbjct: 136 HVVAGTPGRVFDMIRRRSLRTRAIK 160
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 192 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
LG + +Q +GG ++ +L +V TPGR ++ L+ +I++ + D
Sbjct: 107 LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 165
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 295 IPLVLEGRDVVAMARTGSGKTA 316
I +++GRDV+A +++G+GKTA
Sbjct: 47 IKQIIKGRDVIAQSQSGTGKTA 68
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL ++L+G+ G++ P+ IQ++ I +++GRDV+A +++G+GKTA F + +L+
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L + +ALIL+PTRELA+Q K + LG + +Q +GG ++ +L
Sbjct: 63 LDIQVRET--QALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 120
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQ 183
+V TPGR ++ L+ +I+
Sbjct: 121 HVVAGTPGRVFDMIRRRSLRTRAIK 145
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 192 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD 250
LG + +Q +GG ++ +L +V TPGR ++ L+ +I++ + D
Sbjct: 92 LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 150
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 295 IPLVLEGRDVVAMARTGSGKTA 316
I +++GRDV+A +++G+GKTA
Sbjct: 32 IKQIIKGRDVIAQSQSGTGKTA 53
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L E+L+ + RG PTPI+ +PL LEG+D++ ARTG+GKT F +P+ E+
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 99 LK-THAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
L + RAL+L+PTRELALQ + + K+ + GG Q L
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKV--VAVYGGTGYGKQKEALLRG 120
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQ 183
D VVATPGR L + + L LS ++
Sbjct: 121 ADAVVATPGRALDYLRQGVLDLSRVE 146
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKT 315
+PL LEG+D++ ARTG+GKT
Sbjct: 31 ALPLALEGKDLIGQARTGTGKT 52
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 83/134 (61%), Gaps = 9/134 (6%)
Query: 50 KGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVR 109
+ + + G+K T +Q KTIPL+L+G++VV A+TGSGKTA + IP+LE G++
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE--------LGMK 58
Query: 110 ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169
+L+++PTREL Q ++++G++ + + GG Q R+ + DIVVATPGR L
Sbjct: 59 SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLL 117
Query: 170 HIVVEMELKLSSIQ 183
+ + + LSS +
Sbjct: 118 DLWSKGVIDLSSFE 131
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 269 MIHKQRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTAC 317
M K Q++R + K + +V TIPL+L+G++VV A+TGSGKTA
Sbjct: 1 MNEKIEQAIR--EMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAA 47
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 84/148 (56%), Gaps = 5/148 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ G+ + + + G+ PT IQ + IPL L+GRD++ +A TGSGKT F +P+L
Sbjct: 45 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 104
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGG-DSMDNQFARLHAS 157
L + AL+L+PTRELA Q + + LG +QS ++GG DSM A L
Sbjct: 105 L--LETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA-LAKK 161
Query: 158 PDIVVATPGRFL-HIVVEMELKLSSIQY 184
P I++ATPGR + H+ L +++Y
Sbjct: 162 PHIIIATPGRLIDHLENTKGFNLRALKY 189
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 286 KYVQVTDDTIPLVLEGRDVVAMARTGSGKTAC 317
K ++ + IPL L+GRD++ +A TGSGKT
Sbjct: 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGA 96
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 49 LKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE---KLKTHAAT 105
LK + + G+ T IQ K+I +LEGRD++A A+TGSGKT FLIP +E KL+
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR-FMPR 124
Query: 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATP 165
+G LILSPTRELA+QTF +KEL ++GG + + +L +I+VATP
Sbjct: 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 184
Query: 166 GRFL 169
GR L
Sbjct: 185 GRLL 188
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 9/81 (11%)
Query: 236 EMELKLSSIQLSLTDFKQDTSRIAL-DLVGDSTEMIHKQRQSVRKWDPAKKKYVQVTDDT 294
E E ++ S+ L LT +DTS +L +LV ++T +++++ ++ +
Sbjct: 33 EDESEVPSLPLGLTGAFEDTSFASLCNLVNENT------LKAIKEM--GFTNMTEIQHKS 84
Query: 295 IPLVLEGRDVVAMARTGSGKT 315
I +LEGRD++A A+TGSGKT
Sbjct: 85 IRPLLEGRDLLAAAKTGSGKT 105
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+G+ G++ P+ IQ++ I ++G DV+A A++G+GKTA F I +L++
Sbjct: 32 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 91
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-S 157
L+ + +AL+L+PTRELA Q K + LG + +GG ++ N+ +L A +
Sbjct: 92 LEIEFKET--QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 149
Query: 158 PDIVVATPGRFLHIV 172
P IVV TPGR ++
Sbjct: 150 PHIVVGTPGRVFDML 164
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 12/152 (7%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ + ++LK +++ G PTPIQ + P++L+G D++ +A+TG+GKT +L+P
Sbjct: 25 FQQYP---DLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIH 81
Query: 99 LKTHAAT----SGVRALILSPTRELALQTFKFVKELGKFTK--LQSTCLLGGDSMDNQFA 152
L + + +G L+L+PTRELAL E K++ L+S C+ GG + + Q
Sbjct: 82 LDSQPISREQRNGPGMLVLTPTRELALHV---EAECSKYSYKGLKSICIYGGRNRNGQIE 138
Query: 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ DI++ATPGR + + + L SI Y
Sbjct: 139 DISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 18/20 (90%)
Query: 296 PLVLEGRDVVAMARTGSGKT 315
P++L+G D++ +A+TG+GKT
Sbjct: 52 PIILQGIDLIVVAQTGTGKT 71
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 40 QSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKL 99
Q + + +L+ +L G+++PTPIQ + IP++L GR+++A A TGSGKT F IP+L +L
Sbjct: 32 QEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91
Query: 100 KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP- 158
K A G RALI+SPTRELA Q + + ++ + T + + +F +
Sbjct: 92 K-QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKF 150
Query: 159 DIVVATPGRFLHIVVEME--LKLSSIQY 184
DI+V TP R ++++ + + L+S+++
Sbjct: 151 DILVTTPNRLIYLLKQDPPGIDLASVEW 178
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 294 TIPLVLEGRDVVAMARTGSGKT 315
IP++L GR+++A A TGSGKT
Sbjct: 59 AIPVMLHGRELLASAPTGSGKT 80
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 16/162 (9%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F +G ++ + Y PTP+Q+ IP++ E RD++A A+TGSGKTA FL+P+L +
Sbjct: 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 76
Query: 99 LKTHAATSGVRA----------------LILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
+ + +RA L+L+PTRELA+Q ++ ++ ++++ +
Sbjct: 77 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 136
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
GG + Q L ++VATPGR + ++ ++ L +Y
Sbjct: 137 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 178
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 290 VTDDTIPLVLEGRDVVAMARTGSGKTAC 317
V IP++ E RD++A A+TGSGKTA
Sbjct: 41 VQKHAIPIIKEKRDLMACAQTGSGKTAA 68
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 11/153 (7%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
F GL E+LKG+ ++ P+ IQ + +PL+L R+++A +++G+GKTA F + ML
Sbjct: 7 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 66
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
++ A+ +A+ L+P+RELA QT + V+E+GKFTK+ S ++ N+
Sbjct: 67 TRVNPEDASP--QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QI 120
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFV 189
+ ++V TPG L + M KL +Q FV
Sbjct: 121 NAQVIVGTPGTVLDL---MRRKLMQLQKIKIFV 150
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 11/153 (7%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
F GL E+LKG+ ++ P+ IQ + +PL+L R+++A +++G+GKTA F + ML
Sbjct: 7 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 66
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
++ A+ +A+ L+P+RELA QT + V+E+GKFTK+ S ++ N+
Sbjct: 67 TRVNPEDASP--QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QI 120
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFV 189
+ ++V TPG L + M KL +Q FV
Sbjct: 121 NAQVIVGTPGTVLDL---MRRKLMQLQKIKIFV 150
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 11/153 (7%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
F GL E+LKG+ ++ P+ IQ + +PL+L R+++A +++G+GKTA F + ML
Sbjct: 24 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 83
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
++ A+ +A+ L+P+RELA QT + V+E+GKFTK+ S ++ N+
Sbjct: 84 TRVNPEDASP--QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QI 137
Query: 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFV 189
+ ++V TPG L + M KL +Q FV
Sbjct: 138 NAQVIVGTPGTVLDL---MRRKLMQLQKIKIFV 167
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+G+ G++ P+ IQ++ I ++G DV+A A++G+GKTA F I +L++
Sbjct: 42 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 101
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-AS 157
++ + +AL+L+PTRELA Q K V LG + +GG ++ + +L +
Sbjct: 102 IELDLKAT--QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 159
Query: 158 PDIVVATPGRFLHIV 172
P I+V TPGR ++
Sbjct: 160 PHIIVGTPGRVFDML 174
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 187 KFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEMELKLSSIQ 245
K V LG + +GG ++ + +L +P I+V TPGR ++ L I+
Sbjct: 126 KVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIK 185
Query: 246 LSLTD 250
+ + D
Sbjct: 186 MFVLD 190
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+G+ G++ P+ IQ++ I ++G DV+A A++G+GKTA F I +L++
Sbjct: 16 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 75
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-AS 157
++ + +AL+L+PTRELA Q K V LG + +GG ++ + +L +
Sbjct: 76 IELDLKAT--QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 133
Query: 158 PDIVVATPGRFLHIV 172
P I+V TPGR ++
Sbjct: 134 PHIIVGTPGRVFDML 148
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 187 KFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEMELKLSSIQ 245
K V LG + +GG ++ + +L +P I+V TPGR ++ L I+
Sbjct: 100 KVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIK 159
Query: 246 LSLTD 250
+ + D
Sbjct: 160 MFVLD 164
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 80/147 (54%), Gaps = 11/147 (7%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQ F + E +K + R YK PT IQ + IP L G V ++TG+GKT +L+P+ EK
Sbjct: 11 FQPFII--EAIKTL--RFYK-PTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEK 65
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARL 154
+K A V+A+I +PTRELA Q + ++ KF + + CL+GG +L
Sbjct: 66 IKPERAE--VQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKL 123
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSS 181
+ P IV+ TPGR + E L + +
Sbjct: 124 NVQPHIVIGTPGRINDFIREQALDVHT 150
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+G+ G++ P+ IQ++ I + G DV+A A++G+G TA F I +L++
Sbjct: 17 FDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQ 76
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-AS 157
++ + +AL+L+PTRELA Q V LG + +GG ++ + L +
Sbjct: 77 IELDLXAT--QALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQMEA 134
Query: 158 PDIVVATPGRFLHIV 172
P I+V TPGR ++
Sbjct: 135 PHIIVGTPGRVFDML 149
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+GV G++ P+ IQ++ I ++EG DV+A A++G+GKT F I L++
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+ T + +AL+L+PTRELALQ K V L ++ +GG S L +
Sbjct: 84 IDT--SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA- 140
Query: 159 DIVVATPGR 167
IVV TPGR
Sbjct: 141 QIVVGTPGR 149
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 298 VLEGRDVVAMARTGSGKTA 316
++EG DV+A A++G+GKT
Sbjct: 56 IIEGHDVLAQAQSGTGKTG 74
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L ++L+GV G++ P+ IQ++ I ++EG DV+A A++G+GKT F I L++
Sbjct: 23 FDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 82
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+ T + +AL+L+PTRELALQ K V L ++ +GG S L +
Sbjct: 83 IDT--SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA- 139
Query: 159 DIVVATPGR 167
IVV TPGR
Sbjct: 140 QIVVGTPGR 148
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 298 VLEGRDVVAMARTGSGKTAC 317
++EG DV+A A++G+GKT
Sbjct: 55 IIEGHDVLAQAQSGTGKTGT 74
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+GV G++ P+ IQ++ I ++EG DV+A A++G+GKT F I L++
Sbjct: 23 FDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQR 82
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+ T + +AL L+PTRELALQ K V L ++ +GG S L +
Sbjct: 83 IDT--SVKAPQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGLRDA- 139
Query: 159 DIVVATPGR 167
IVV TPGR
Sbjct: 140 QIVVGTPGR 148
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 298 VLEGRDVVAMARTGSGKTA 316
++EG DV+A A++G+GKT
Sbjct: 55 IIEGHDVLAQAQSGTGKTG 73
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F V+ + ++ + PT IQ + P+ L G D+V +A+TGSGKT +L+P +
Sbjct: 31 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 90
Query: 99 LKTHA---ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+ G L+L+PTRELA Q + E + +L+STC+ GG Q L
Sbjct: 91 INHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 150
Query: 156 ASPDIVVATPGRFL 169
+I +ATPGR +
Sbjct: 151 RGVEICIATPGRLI 164
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 183 QYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 231
Q + E + +L+STC+ GG Q L +I +ATPGR +
Sbjct: 116 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 164
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 296 PLVLEGRDVVAMARTGSGKT 315
P+ L G D+V +A+TGSGKT
Sbjct: 61 PVALSGLDMVGVAQTGSGKT 80
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F V+ + ++ + PT IQ + P+ L G D+V +A+TGSGKT +L+P +
Sbjct: 45 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 104
Query: 99 LKTHA---ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+ G L+L+PTRELA Q + E + +L+STC+ GG Q L
Sbjct: 105 INHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 164
Query: 156 ASPDIVVATPGRFL 169
+I +ATPGR +
Sbjct: 165 RGVEICIATPGRLI 178
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 191 ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 231
E + +L+STC+ GG Q L +I +ATPGR +
Sbjct: 138 EYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 178
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 296 PLVLEGRDVVAMARTGSGKT 315
P+ L G D+V +A+TGSGKT
Sbjct: 75 PVALSGLDMVGVAQTGSGKT 94
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+GV G++ P+ IQ++ I ++EG DV+A A++G+GKT F I L++
Sbjct: 16 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+ T + +AL+L+PTRELALQ K V L ++ +GG S L +
Sbjct: 76 IDT--SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA- 132
Query: 159 DIVVATPGR 167
IVV TPGR
Sbjct: 133 QIVVGTPGR 141
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 298 VLEGRDVVAMARTGSGKTAC 317
++EG DV+A A++G+GKT
Sbjct: 48 IIEGHDVLAQAQSGTGKTGT 67
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 15/155 (9%)
Query: 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVL--EGRDVVAMARTGSGKTACFLIPMLEKLKT 101
L E+ K + + + TP+Q+KTI +L E DV+A A+TG+GKT FLIP+ + L
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 102 HAATSG--VRALILSPTRELALQTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARLH 155
S V+A+I++PTR+LALQ VK++ K L+GG +++
Sbjct: 88 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN 147
Query: 156 A-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFV 189
P+IV+ATPGR + ++ + K F+FV
Sbjct: 148 KLRPNIVIATPGRLIDVLEKYSNKF------FRFV 176
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L E+L+ ++ G++ P+ +Q + IP + G DV+ A++G GKTA F++ L++
Sbjct: 9 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 68
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHAS 157
L+ T V L++ TRELA Q K + K+ ++ GG S+ L +
Sbjct: 69 LE--PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 126
Query: 158 -PDIVVATPGRFLHIVVEMELKLSSIQY 184
P IVV TPGR L + L L I++
Sbjct: 127 CPHIVVGTPGRILALARNKSLNLKHIKH 154
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 21/139 (15%)
Query: 183 QYTFKFVKELGKFTK----LQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEM 237
+ F+ KE +F+K ++ GG S+ L + P IVV TPGR L +
Sbjct: 86 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 145
Query: 238 ELKLSSIQLSLTDFKQDTSRIALDLVGDSTE---MIHKQRQSV-------RKWDPAKKKY 287
L L I+ + D + D LD+ D E M ++Q + ++ P +K+
Sbjct: 146 SLNLKHIKHFILD-EADKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 204
Query: 288 VQ-----VTDDTIPLVLEG 301
+Q DD L L G
Sbjct: 205 MQDPMEIFVDDETKLTLHG 223
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 289 QVTDDTIPLVLEGRDVVAMARTGSGKTA 316
+V + IP + G DV+ A++G GKTA
Sbjct: 32 EVQHECIPQAILGMDVLCQAKSGMGKTA 59
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L E+L+ ++ G++ P+ +Q + IP + G DV+ A++G GKTA F++ L++
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 69
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHAS 157
L+ T V L++ TRELA Q K + K+ ++ GG S+ L +
Sbjct: 70 LE--PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 127
Query: 158 -PDIVVATPGRFLHIVVEMELKLSSIQY 184
P IVV TPGR L + L L I++
Sbjct: 128 CPHIVVGTPGRILALARNKSLNLKHIKH 155
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 21/139 (15%)
Query: 183 QYTFKFVKELGKFTK----LQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEM 237
+ F+ KE +F+K ++ GG S+ L + P IVV TPGR L +
Sbjct: 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 146
Query: 238 ELKLSSIQLSLTDFKQDTSRIALDLVGDSTE---MIHKQRQSV-------RKWDPAKKKY 287
L L I+ + D + D LD+ D E M ++Q + ++ P +K+
Sbjct: 147 SLNLKHIKHFILD-ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 205
Query: 288 VQ-----VTDDTIPLVLEG 301
+Q DD L L G
Sbjct: 206 MQDPMEIFVDDETKLTLHG 224
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 289 QVTDDTIPLVLEGRDVVAMARTGSGKTA 316
+V + IP + G DV+ A++G GKTA
Sbjct: 33 EVQHECIPQAILGMDVLCQAKSGMGKTA 60
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L E+L+ ++ G++ P+ +Q + IP + G DV+ A++G GKTA F++ L++
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 69
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHAS 157
L+ T V L++ TRELA Q K + K+ ++ GG S+ L +
Sbjct: 70 LE--PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 127
Query: 158 -PDIVVATPGRFLHIVVEMELKLSSIQY 184
P IVV TPGR L + L L I++
Sbjct: 128 CPHIVVGTPGRILALARNKSLNLKHIKH 155
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 21/139 (15%)
Query: 183 QYTFKFVKELGKFTK----LQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEM 237
+ F+ KE +F+K ++ GG S+ L + P IVV TPGR L +
Sbjct: 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 146
Query: 238 ELKLSSIQLSLTDFKQDTSRIALDLVGDSTE---MIHKQRQSV-------RKWDPAKKKY 287
L L I+ + D + D LD+ D E M ++Q + ++ P +K+
Sbjct: 147 SLNLKHIKHFILD-ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 205
Query: 288 VQ-----VTDDTIPLVLEG 301
+Q DD L L G
Sbjct: 206 MQDPMEIFVDDETKLTLHG 224
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 289 QVTDDTIPLVLEGRDVVAMARTGSGKTA 316
+V + IP + G DV+ A++G GKTA
Sbjct: 33 EVQHECIPQAILGMDVLCQAKSGMGKTA 60
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 15/155 (9%)
Query: 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVL--EGRDVVAMARTGSGKTACFLIPMLEKLKT 101
L E+ K + + + TP+Q+KTI +L E DV+A A+TG+GKT FLIP+ + L
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 102 HAATSG--VRALILSPTRELALQTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARLH 155
S V+A+I++PTR+LALQ VK++ K L+GG +++
Sbjct: 139 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN 198
Query: 156 A-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFV 189
P+IV+ATPGR + ++ + K F+FV
Sbjct: 199 KLRPNIVIATPGRLIDVLEKYSNKF------FRFV 227
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L E+L+ ++ G++ P+ +Q + IP + G DV+ A++G GKTA F++ L++
Sbjct: 16 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 75
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHAS 157
L+ T V L++ TRELA Q K + K+ ++ GG S+ L +
Sbjct: 76 LE--PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 133
Query: 158 -PDIVVATPGRFLHIVVEMELKLSSIQY 184
P IVV TPGR L + L L I++
Sbjct: 134 CPHIVVGTPGRILALARNKSLNLKHIKH 161
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 183 QYTFKFVKELGKFTK----LQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEM 237
+ F+ KE +F+K ++ GG S+ L + P IVV TPGR L +
Sbjct: 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 152
Query: 238 ELKLSSIQLSLTDFKQDTSRIALDLVGDSTEM 269
L L I+ + D + D LD+ D E+
Sbjct: 153 SLNLKHIKHFILD-ECDKMLEQLDMRRDVQEI 183
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 289 QVTDDTIPLVLEGRDVVAMARTGSGKTA 316
+V + IP + G DV+ A++G GKTA
Sbjct: 39 EVQHECIPQAILGMDVLCQAKSGMGKTA 66
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 15/152 (9%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVL--EGRDVVAMARTGSGKTACFLIPMLEKLKTHAA 104
E+ K + + + TP+Q+KTI +L E DV+A A+TG+GKT FLIP+ + L
Sbjct: 31 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF 90
Query: 105 TSG--VRALILSPTRELALQTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARLHA-S 157
S V+A+I++PTR+LALQ VK++ K L+GG +++
Sbjct: 91 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 150
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQYTFKFV 189
P+IV+ATPGR + ++ + K F+FV
Sbjct: 151 PNIVIATPGRLIDVLEKYSNKF------FRFV 176
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 8/134 (5%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
F+ L ++L+GV G+ P+ IQ +PL+L ++++A +++G+GKTA F++ ML
Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLH 155
+++ A + L LSPT ELALQT K ++++GKF +L+ + G+ ++
Sbjct: 154 SQVE--PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QK 208
Query: 156 ASPDIVVATPGRFL 169
S IV+ TPG L
Sbjct: 209 ISEQIVIGTPGTVL 222
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 8/134 (5%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
F+ L ++L+GV G+ P+ IQ +PL+L ++++A +++G+GKTA F++ ML
Sbjct: 43 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 102
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLH 155
+++ A + L LSPT ELALQT K ++++GKF +L+ + G+ ++
Sbjct: 103 SQVE--PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QK 157
Query: 156 ASPDIVVATPGRFL 169
S IV+ TPG L
Sbjct: 158 ISEQIVIGTPGTVL 171
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 8/134 (5%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE--GRDVVAMARTGSGKTACFLIPML 96
F+ L ++L+GV G+ P+ IQ +PL+L ++++A +++G+GKTA F++ ML
Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLH 155
++ A + L LSPT ELALQT K ++++GKF +L+ + G+ ++
Sbjct: 154 SQV--EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---GQK 208
Query: 156 ASPDIVVATPGRFL 169
S IV+ TPG L
Sbjct: 209 ISEQIVIGTPGTVL 222
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 8/134 (5%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
F+ L ++L+GV G+ P+ IQ +PL+L ++++A +++G+GKTA F++ ML
Sbjct: 27 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 86
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLH 155
+++ A + L LSPT ELALQT K ++++GKF +L+ + G+ ++
Sbjct: 87 SQVE--PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QK 141
Query: 156 ASPDIVVATPGRFL 169
S IV+ TPG L
Sbjct: 142 ISEQIVIGTPGTVL 155
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 8/134 (5%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
F+ L ++L+GV G+ P+ IQ +PL+L ++++A +++G+GKTA F++ ML
Sbjct: 64 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 123
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLH 155
+++ A + L LSPT ELALQT K ++++GKF +L+ + G+ ++
Sbjct: 124 SQVE--PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QK 178
Query: 156 ASPDIVVATPGRFL 169
S IV+ TPG L
Sbjct: 179 ISEQIVIGTPGTVL 192
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 8/134 (5%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE--GRDVVAMARTGSGKTACFLIPML 96
F+ L ++L+GV G+ P+ IQ +PL+L ++++A +++G+GKTA F++ ML
Sbjct: 27 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 86
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLH 155
++ A + L LSPT ELALQT K ++++GKF +L+ + G+ ++
Sbjct: 87 SQV--EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---GQK 141
Query: 156 ASPDIVVATPGRFL 169
S IV+ TPG L
Sbjct: 142 ISEQIVIGTPGTVL 155
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+S L VL+G+ G++ P+P+Q K IPL G D++ A++G+GKT F L+
Sbjct: 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 85
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELG-KFTKLQSTCLLGGDSMDNQFARLHAS 157
L ++ + LIL+PTRE+A+Q + +G K L+ +GG + RL
Sbjct: 86 LVLENLSTQI--LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC 143
Query: 158 PDIVVATPGRFLHIV 172
I V +PGR ++
Sbjct: 144 -HIAVGSPGRIKQLI 157
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 71/123 (57%), Gaps = 8/123 (6%)
Query: 63 IQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120
IQ K +PL+L R+++ +++G+GKTA F + ML ++ A+ +A+ L+P+RELA
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV--DASVPKPQAICLAPSRELA 202
Query: 121 LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 180
Q V E+GK+T++++ G + A++ A IV+ TPG + ++ +L
Sbjct: 203 RQIMDVVTEMGKYTEVKTA--FGIKDSVPKGAKIDAQ--IVIGTPGTVMDLMKRRQLDAR 258
Query: 181 SIQ 183
I+
Sbjct: 259 DIK 261
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GY+ P Q + I VL GRD + + TG GK+ C+ IP L
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPAL 62
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To
Atp-Gamma-S
Length = 523
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
GY+ P Q + I VL GRD + + TG GK+ C+ IP L
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 49 LKGVLKRGYKIPT--PIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
+K +L+ +K+ P+Q +TI + + G++V + TG GK+ C+ +P L S
Sbjct: 32 VKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL--------CS 83
Query: 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
L++ P L +K+LG S +L S +HA
Sbjct: 84 DGFTLVICPLISLMEDQLMVLKQLGI-----SATMLNASSSKEHVKWVHA 128
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 47 EVLKGVLK-RGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA 104
E +K LK RG + P Q + + +LEG++ + T SGKT I M+ ++
Sbjct: 10 ERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRI----L 65
Query: 105 TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVAT 164
T G +A+ + P + LA + F+ ++ K + DS D + DI++AT
Sbjct: 66 TQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKY----DIIIAT 121
Query: 165 PGRF 168
+F
Sbjct: 122 AEKF 125
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 61 TPIQRKTIPLVLEGRDVVAM-ARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
PIQ + V D V + A TGSGKT C +L L +S R + ++P L
Sbjct: 928 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRML---LQSSEGRCVYITPMEAL 984
Query: 120 ALQTF-----KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168
A Q + KF L K LL G++ + +L +I+++TP ++
Sbjct: 985 AEQVYMDWYEKFQDRLNK-----KVVLLTGETSTD--LKLLGKGNIIISTPEKW 1031
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 56 GYKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGV------ 108
G+K IQ K LE +++ A TG+GKT L+ ML ++ H G
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF 135
Query: 109 RALILSPTRELALQTFKFVKEL-GKFTKLQSTCLLGGDSM--DNQFARLHASP-DIVVAT 164
+ + ++P R L V+E+ G F K +T + + D+Q + S I+V T
Sbjct: 136 KIIYIAPMRSL-------VQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCT 188
Query: 165 PGRF 168
P ++
Sbjct: 189 PEKW 192
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 61 TPIQRKTIPLVLEGRDVVAM-ARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
PIQ + V D V + A TGSGKT C +L L +S R + ++P L
Sbjct: 928 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRML---LQSSEGRCVYITPMEAL 984
Query: 120 ALQTF-----KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168
A Q + KF L K LL G++ + +L +I+++TP ++
Sbjct: 985 AEQVYMDWYEKFQDRLNK-----KVVLLTGETSTD--LKLLGKGNIIISTPEKW 1031
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 56 GYKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGV------ 108
G+K IQ K LE +++ A TG+GKT L+ ML ++ H G
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF 135
Query: 109 RALILSPTRELALQTFKFVKEL-GKFTKLQSTCLLGGDSM--DNQFARLHASP-DIVVAT 164
+ + ++P R L V+E+ G F K +T + + D+Q + S I+V T
Sbjct: 136 KIIYIAPMRSL-------VQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCT 188
Query: 165 PGRF 168
P ++
Sbjct: 189 PEKW 192
>pdb|3DF7|A Chain A, Crystal Structure Of A Putative Atp-Grasp Superfamily
Protein From Archaeoglobus Fulgidus
Length = 305
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 268 EMIHKQRQSVRKWDPAKKKYVQVTDDTIPLV 298
E+ H +RQ VRK A+K YV V D T+ ++
Sbjct: 272 EVKHVRRQXVRKSKSAEKPYVSVGDYTLEII 302
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
P IQ+ +L A A TG GKT+ L + A G R ++ PT L
Sbjct: 57 PRAIQKMWAKRILRKESFAATAPTGVGKTSFGL-----AMSLFLALKGKRCYVIFPTSLL 111
Query: 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
+Q + +++ + + + L+G + I F+ + ++ +
Sbjct: 112 VIQAAETIRKYAEKAGVGTENLIG-----------YYHGRIPKREKENFMQNLRNFKIVI 160
Query: 180 SSIQYTFKFVKELGKF 195
++ Q+ K +ELG F
Sbjct: 161 TTTQFLSKHYRELGHF 176
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
P IQ+ +L A A TG GKT+ L + A G R ++ PT L
Sbjct: 57 PRAIQKMWAKRILRKESFAATAPTGVGKTSFGL-----AMSLFLALKGKRCYVIFPTSLL 111
Query: 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
+Q + +++ + + + L+G + I F+ + ++ +
Sbjct: 112 VIQAAETIRKYAEKAGVGTENLIG-----------YYHGRIPKREKENFMQNLRNFKIVI 160
Query: 180 SSIQYTFKFVKELGKF 195
++ Q+ K +ELG F
Sbjct: 161 TTTQFLSKHYRELGHF 176
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 62 PIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKL-KTHAATSGVRALILSPTRELA 120
P Q + LEG++++ TGSGKT + + L K A+ + ++L L
Sbjct: 36 PYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLV 95
Query: 121 LQTFKFVKELGKFTKLQSTCL-LGGDS-MDNQFARLHASPDIVVAT 164
Q F+ KE F K + L GD+ + F + S DI+++T
Sbjct: 96 EQLFR--KEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIIST 139
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 48 VLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
V++ + KRG K P Q + + +LEG ++ + TGSGKT + ++ L +
Sbjct: 19 VIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFL----LKN 74
Query: 107 GVRALILSPTRELALQTF 124
G +A+ ++P R L + +
Sbjct: 75 GGKAIYVTPLRALTNEKY 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,430,083
Number of Sequences: 62578
Number of extensions: 311803
Number of successful extensions: 897
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 159
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)