Query psy18032
Match_columns 333
No_of_seqs 261 out of 2611
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 20:44:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330|consensus 100.0 7.9E-55 1.7E-59 384.2 15.1 286 33-320 57-405 (476)
2 COG0513 SrmB Superfamily II DN 100.0 7.8E-53 1.7E-57 406.2 23.2 285 37-321 29-379 (513)
3 KOG0331|consensus 100.0 2.6E-52 5.6E-57 389.4 15.8 284 38-321 92-447 (519)
4 KOG0338|consensus 100.0 5.6E-51 1.2E-55 370.2 10.3 274 37-311 181-518 (691)
5 KOG0328|consensus 100.0 1.5E-50 3.2E-55 343.7 9.3 288 30-319 20-370 (400)
6 PRK04837 ATP-dependent RNA hel 100.0 1.1E-47 2.4E-52 365.0 23.8 290 32-321 3-361 (423)
7 KOG0333|consensus 100.0 5.2E-48 1.1E-52 352.0 14.4 294 28-321 236-623 (673)
8 KOG0340|consensus 100.0 1.9E-48 4.1E-53 340.2 10.2 286 34-321 4-360 (442)
9 PTZ00110 helicase; Provisional 100.0 5E-47 1.1E-51 369.0 21.0 283 29-311 122-469 (545)
10 KOG0346|consensus 100.0 6.1E-48 1.3E-52 345.0 13.2 285 37-322 19-410 (569)
11 KOG0341|consensus 100.0 5.9E-49 1.3E-53 346.8 5.8 290 28-317 161-520 (610)
12 PRK10590 ATP-dependent RNA hel 100.0 3.4E-46 7.4E-51 357.4 22.7 283 37-319 1-349 (456)
13 PRK11776 ATP-dependent RNA hel 100.0 5.2E-46 1.1E-50 357.2 22.1 274 36-311 3-334 (460)
14 PLN00206 DEAD-box ATP-dependen 100.0 4.2E-46 9.1E-51 361.3 19.8 291 29-319 113-472 (518)
15 PRK04537 ATP-dependent RNA hel 100.0 1.4E-45 2.9E-50 360.2 23.4 285 36-320 8-362 (572)
16 PRK11634 ATP-dependent RNA hel 100.0 1.1E-45 2.4E-50 363.0 21.2 285 35-321 4-351 (629)
17 KOG0342|consensus 100.0 3E-46 6.5E-51 338.7 13.7 289 33-321 78-436 (543)
18 KOG0335|consensus 100.0 2.9E-46 6.4E-51 343.4 12.6 293 33-325 70-443 (482)
19 KOG0326|consensus 100.0 3.5E-47 7.5E-52 328.1 4.1 281 29-311 77-414 (459)
20 PRK11192 ATP-dependent RNA hel 100.0 1.9E-44 4.1E-49 344.2 22.6 275 37-311 1-337 (434)
21 KOG0345|consensus 100.0 5.4E-45 1.2E-49 328.7 17.6 285 37-321 4-363 (567)
22 KOG0339|consensus 100.0 2.1E-45 4.5E-50 333.7 14.3 286 26-311 212-560 (731)
23 KOG0336|consensus 100.0 1.4E-45 3.1E-50 327.3 8.2 302 16-318 198-565 (629)
24 KOG0343|consensus 100.0 5E-45 1.1E-49 334.2 11.2 286 35-321 67-421 (758)
25 PRK01297 ATP-dependent RNA hel 100.0 1.3E-42 2.8E-47 334.7 20.8 278 34-311 84-427 (475)
26 KOG0347|consensus 100.0 1.8E-43 3.8E-48 324.0 13.8 289 29-318 173-566 (731)
27 KOG0332|consensus 100.0 4.5E-43 9.7E-48 308.3 9.5 285 29-318 82-436 (477)
28 PTZ00424 helicase 45; Provisio 100.0 7.7E-41 1.7E-45 316.5 23.6 275 35-311 26-359 (401)
29 KOG0348|consensus 100.0 2.5E-42 5.4E-47 315.5 11.4 291 32-322 131-554 (708)
30 KOG0327|consensus 100.0 3E-42 6.5E-47 305.0 10.1 284 34-319 23-367 (397)
31 KOG0334|consensus 100.0 1.3E-41 2.9E-46 332.8 12.5 292 30-321 358-719 (997)
32 TIGR03817 DECH_helic helicase/ 100.0 1.6E-38 3.5E-43 318.0 21.0 264 43-311 20-371 (742)
33 KOG4284|consensus 100.0 2.3E-39 4.9E-44 301.5 10.7 280 29-311 17-364 (980)
34 KOG0337|consensus 100.0 1.4E-38 3E-43 283.8 12.3 288 32-320 16-366 (529)
35 KOG0344|consensus 100.0 9.6E-38 2.1E-42 289.4 8.3 298 22-319 117-492 (593)
36 KOG0350|consensus 100.0 9.3E-37 2E-41 277.2 10.0 290 37-327 127-541 (620)
37 COG1201 Lhr Lhr-like helicases 100.0 1.1E-35 2.3E-40 292.3 17.3 277 44-322 8-360 (814)
38 KOG0329|consensus 100.0 6.3E-37 1.4E-41 257.3 7.0 182 34-217 39-235 (387)
39 PLN03137 ATP-dependent DNA hel 100.0 3.8E-35 8.3E-40 294.1 19.6 266 37-314 435-776 (1195)
40 PRK13767 ATP-dependent helicas 100.0 1.2E-34 2.6E-39 295.4 18.1 267 44-311 18-382 (876)
41 TIGR00614 recQ_fam ATP-depende 100.0 3.4E-34 7.4E-39 275.4 14.4 246 54-311 6-318 (470)
42 PRK02362 ski2-like helicase; P 100.0 1.1E-33 2.5E-38 285.2 17.1 264 37-311 1-380 (737)
43 PRK00254 ski2-like helicase; P 100.0 3E-33 6.6E-38 281.5 16.6 265 37-311 1-371 (720)
44 PRK11057 ATP-dependent DNA hel 100.0 7.2E-33 1.6E-37 273.2 16.2 257 42-311 7-328 (607)
45 TIGR01389 recQ ATP-dependent D 100.0 2.4E-32 5.2E-37 269.8 18.7 252 50-314 3-320 (591)
46 TIGR00580 mfd transcription-re 100.0 6.1E-32 1.3E-36 273.7 18.6 257 43-312 435-756 (926)
47 PRK10689 transcription-repair 100.0 1.6E-31 3.4E-36 276.0 17.3 254 46-311 588-904 (1147)
48 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.8E-31 3.9E-36 263.8 16.7 257 50-314 6-379 (844)
49 PRK09401 reverse gyrase; Revie 100.0 1.5E-30 3.3E-35 269.2 18.8 257 47-311 68-429 (1176)
50 PRK01172 ski2-like helicase; P 100.0 1.6E-30 3.5E-35 260.4 17.3 244 37-292 1-319 (674)
51 PRK10917 ATP-dependent DNA hel 100.0 6.2E-30 1.3E-34 255.1 16.6 253 47-312 249-575 (681)
52 KOG0349|consensus 100.0 1.7E-31 3.6E-36 239.4 4.4 226 107-332 286-621 (725)
53 COG0514 RecQ Superfamily II DN 100.0 1.7E-30 3.7E-35 247.4 11.0 260 48-320 5-333 (590)
54 PRK14701 reverse gyrase; Provi 100.0 4.6E-29 9.9E-34 263.4 20.2 239 46-292 66-386 (1638)
55 TIGR00643 recG ATP-dependent D 100.0 2E-29 4.3E-34 249.8 16.5 254 46-312 223-552 (630)
56 PRK09751 putative ATP-dependen 100.0 9.2E-30 2E-34 264.7 13.0 243 79-321 1-382 (1490)
57 cd00268 DEADc DEAD-box helicas 100.0 1.1E-27 2.5E-32 205.6 19.4 179 39-217 1-192 (203)
58 TIGR01054 rgy reverse gyrase. 100.0 8E-28 1.7E-32 249.4 19.4 239 45-291 64-382 (1171)
59 COG1202 Superfamily II helicas 99.9 5.2E-27 1.1E-31 217.1 13.3 252 35-292 192-498 (830)
60 COG1205 Distinct helicase fami 99.9 2.4E-26 5.2E-31 231.6 17.9 267 44-313 55-410 (851)
61 PHA02653 RNA helicase NPH-II; 99.9 3E-26 6.6E-31 225.2 14.8 246 62-317 167-509 (675)
62 KOG0352|consensus 99.9 6.6E-27 1.4E-31 209.7 7.8 257 47-315 6-352 (641)
63 PRK11664 ATP-dependent RNA hel 99.9 8E-25 1.7E-29 220.3 17.1 235 64-311 10-325 (812)
64 PRK12898 secA preprotein trans 99.9 1.7E-24 3.8E-29 210.1 16.5 105 55-169 100-204 (656)
65 TIGR01970 DEAH_box_HrpB ATP-de 99.9 4.6E-24 9.9E-29 214.4 16.6 240 64-316 7-330 (819)
66 KOG0351|consensus 99.9 5.6E-25 1.2E-29 220.8 9.8 254 47-313 251-580 (941)
67 TIGR03158 cas3_cyano CRISPR-as 99.9 6.1E-24 1.3E-28 197.2 15.8 239 63-311 1-357 (357)
68 TIGR01587 cas3_core CRISPR-ass 99.9 6E-24 1.3E-28 198.2 13.9 234 76-315 1-322 (358)
69 PHA02558 uvsW UvsW helicase; P 99.9 3.7E-24 8E-29 207.2 10.9 256 57-326 112-455 (501)
70 PF00270 DEAD: DEAD/DEAH box h 99.9 8.1E-23 1.8E-27 170.0 15.8 152 61-215 1-168 (169)
71 TIGR00963 secA preprotein tran 99.9 1.4E-23 3E-28 205.0 12.4 123 55-187 53-182 (745)
72 PRK09200 preprotein translocas 99.9 4.7E-23 1E-27 204.1 15.0 124 55-187 75-205 (790)
73 COG1200 RecG RecG-like helicas 99.9 7.9E-23 1.7E-27 195.0 14.0 267 42-320 245-585 (677)
74 COG1204 Superfamily II helicas 99.9 1.5E-22 3.3E-27 201.7 15.1 240 43-292 15-348 (766)
75 COG1111 MPH1 ERCC4-like helica 99.9 5.6E-23 1.2E-27 188.8 10.6 124 58-187 14-137 (542)
76 TIGR03714 secA2 accessory Sec 99.9 8.9E-22 1.9E-26 193.5 13.7 125 55-187 67-201 (762)
77 KOG0353|consensus 99.9 3.8E-22 8.3E-27 176.9 5.7 243 38-292 72-375 (695)
78 PRK05580 primosome assembly pr 99.9 1.3E-20 2.8E-25 187.8 16.6 140 59-213 144-308 (679)
79 PRK12899 secA preprotein trans 99.8 7.7E-21 1.7E-25 188.2 13.1 141 39-186 64-220 (970)
80 PRK13766 Hef nuclease; Provisi 99.8 3.3E-20 7.2E-25 189.2 14.6 125 57-187 13-137 (773)
81 COG1197 Mfd Transcription-repa 99.8 5.9E-20 1.3E-24 184.4 15.1 264 42-319 577-906 (1139)
82 KOG0354|consensus 99.8 9.9E-21 2.1E-25 183.2 8.2 146 59-210 62-222 (746)
83 KOG0952|consensus 99.8 1.3E-18 2.9E-23 171.0 14.8 236 54-292 105-430 (1230)
84 PRK13104 secA preprotein trans 99.8 1.6E-17 3.5E-22 165.0 17.8 123 55-187 79-208 (896)
85 PRK09694 helicase Cas3; Provis 99.7 1.4E-17 3.1E-22 168.0 13.9 251 58-311 285-660 (878)
86 PRK11131 ATP-dependent RNA hel 99.7 1.9E-17 4.1E-22 170.8 13.2 233 63-311 78-397 (1294)
87 PRK12904 preprotein translocas 99.7 6E-17 1.3E-21 160.7 15.6 123 55-187 78-207 (830)
88 TIGR00595 priA primosomal prot 99.7 3.8E-17 8.2E-22 157.7 12.4 121 78-213 1-143 (505)
89 KOG0947|consensus 99.7 3.8E-17 8.2E-22 159.4 12.0 159 53-228 292-469 (1248)
90 COG4581 Superfamily II RNA hel 99.7 7.1E-17 1.5E-21 162.3 12.9 148 50-210 111-271 (1041)
91 KOG0948|consensus 99.7 4.6E-17 1E-21 155.3 9.2 154 53-225 124-298 (1041)
92 COG1110 Reverse gyrase [DNA re 99.7 4.4E-15 9.6E-20 146.5 18.7 247 48-300 71-408 (1187)
93 TIGR00603 rad25 DNA repair hel 99.6 1.7E-15 3.6E-20 149.5 11.0 250 59-324 255-605 (732)
94 smart00487 DEXDc DEAD-like hel 99.6 2.1E-14 4.5E-19 121.5 15.4 159 54-215 3-176 (201)
95 KOG0951|consensus 99.6 8.5E-15 1.8E-19 146.5 13.2 165 44-215 296-492 (1674)
96 PRK13107 preprotein translocas 99.6 5.2E-14 1.1E-18 139.9 15.5 123 55-187 79-208 (908)
97 PRK12906 secA preprotein trans 99.6 2.2E-14 4.7E-19 142.1 11.3 105 55-169 77-181 (796)
98 COG4098 comFA Superfamily II D 99.5 2.4E-14 5.2E-19 126.3 9.0 233 56-311 93-399 (441)
99 TIGR01967 DEAH_box_HrpA ATP-de 99.5 1E-13 2.2E-18 143.9 15.0 244 55-311 60-390 (1283)
100 PRK11448 hsdR type I restricti 99.4 9.5E-13 2.1E-17 136.9 9.9 109 59-172 413-526 (1123)
101 COG1061 SSL2 DNA or RNA helica 99.4 4.5E-12 9.8E-17 121.0 13.2 234 59-311 36-374 (442)
102 cd00046 DEXDc DEAD-like helica 99.3 3.4E-11 7.3E-16 95.8 13.0 108 75-186 1-108 (144)
103 COG1203 CRISPR-associated heli 99.3 1.5E-11 3.2E-16 124.3 10.0 251 60-311 196-533 (733)
104 COG1198 PriA Primosomal protei 99.2 6.2E-10 1.3E-14 110.2 14.4 140 58-212 197-362 (730)
105 KOG0950|consensus 99.1 1.1E-10 2.4E-15 115.3 8.7 160 48-217 212-397 (1008)
106 TIGR01407 dinG_rel DnaQ family 99.1 3.1E-10 6.6E-15 116.9 11.9 96 44-145 231-333 (850)
107 TIGR00631 uvrb excinuclease AB 99.0 4.7E-10 1E-14 111.4 8.6 76 245-320 445-551 (655)
108 PF04851 ResIII: Type III rest 99.0 1.6E-09 3.5E-14 90.7 10.3 106 60-174 4-128 (184)
109 PRK04914 ATP-dependent helicas 99.0 2.1E-09 4.5E-14 110.1 12.0 103 59-169 152-259 (956)
110 PRK07246 bifunctional ATP-depe 99.0 1.7E-09 3.8E-14 110.3 10.6 87 53-146 240-331 (820)
111 PRK12900 secA preprotein trans 98.9 3.1E-09 6.7E-14 107.0 8.9 101 59-168 138-238 (1025)
112 COG0556 UvrB Helicase subunit 98.9 5.9E-09 1.3E-13 97.5 9.7 68 56-132 10-82 (663)
113 COG1643 HrpA HrpA-like helicas 98.9 4.3E-08 9.2E-13 98.8 15.9 221 61-292 52-321 (845)
114 TIGR03117 cas_csf4 CRISPR-asso 98.9 9.2E-09 2E-13 101.1 10.5 77 67-146 9-88 (636)
115 smart00489 DEXDc3 DEAD-like he 98.9 1.8E-08 3.9E-13 91.0 10.4 76 55-131 5-85 (289)
116 smart00488 DEXDc2 DEAD-like he 98.9 1.8E-08 3.9E-13 91.0 10.4 76 55-131 5-85 (289)
117 PRK13103 secA preprotein trans 98.8 1.7E-08 3.6E-13 101.3 10.7 122 55-186 79-207 (913)
118 PRK12326 preprotein translocas 98.7 1.4E-07 3E-12 92.7 11.6 105 55-169 75-179 (764)
119 KOG0951|consensus 98.7 6E-08 1.3E-12 98.5 8.7 106 57-171 1141-1248(1674)
120 KOG0949|consensus 98.6 4.4E-08 9.6E-13 97.2 6.3 149 56-210 509-672 (1330)
121 KOG0953|consensus 98.6 4.7E-08 1E-12 91.9 4.3 194 74-292 191-417 (700)
122 TIGR00348 hsdR type I site-spe 98.5 5.7E-07 1.2E-11 90.3 10.4 104 60-172 239-353 (667)
123 PRK08074 bifunctional ATP-depe 98.5 7.3E-07 1.6E-11 92.8 10.8 85 56-145 255-346 (928)
124 PF07517 SecA_DEAD: SecA DEAD- 98.4 1.1E-05 2.3E-10 71.5 14.5 130 54-195 73-209 (266)
125 KOG0920|consensus 98.4 6E-06 1.3E-10 83.6 13.3 223 61-292 175-478 (924)
126 KOG0922|consensus 98.3 7.2E-06 1.6E-10 79.2 12.4 218 63-292 55-324 (674)
127 PRK11747 dinG ATP-dependent DN 98.3 5E-06 1.1E-10 84.0 11.3 85 56-145 23-119 (697)
128 PRK12902 secA preprotein trans 98.2 5.8E-06 1.3E-10 83.1 10.1 122 55-186 82-210 (939)
129 KOG4150|consensus 98.2 1.4E-06 3E-11 82.4 5.2 259 50-311 277-625 (1034)
130 CHL00122 secA preprotein trans 98.2 7.2E-06 1.6E-10 82.4 9.5 104 55-168 73-176 (870)
131 COG1199 DinG Rad3-related DNA 98.2 6.2E-06 1.3E-10 83.2 8.9 74 53-130 9-86 (654)
132 PRK05298 excinuclease ABC subu 98.1 4.1E-07 8.8E-12 91.1 -1.7 75 245-319 449-554 (652)
133 PF13245 AAA_19: Part of AAA d 98.1 2.2E-05 4.7E-10 55.9 7.6 60 67-127 2-62 (76)
134 TIGR00604 rad3 DNA repair heli 98.1 1.7E-05 3.6E-10 80.6 9.5 75 55-131 6-84 (705)
135 KOG0923|consensus 98.0 5.2E-05 1.1E-09 73.2 11.2 152 61-224 267-436 (902)
136 PRK14873 primosome assembly pr 98.0 1.3E-05 2.7E-10 80.1 7.3 121 79-213 165-307 (665)
137 PF13086 AAA_11: AAA domain; P 97.8 7E-05 1.5E-09 64.9 7.7 69 60-129 2-75 (236)
138 KOG0343|consensus 97.8 6.2E-06 1.3E-10 77.9 0.3 41 293-333 98-138 (758)
139 PF00176 SNF2_N: SNF2 family N 97.8 0.00015 3.2E-09 65.6 9.2 94 75-169 26-119 (299)
140 KOG0952|consensus 97.7 8.6E-06 1.9E-10 82.1 -0.3 124 57-186 925-1051(1230)
141 PF07652 Flavi_DEAD: Flaviviru 97.6 6.2E-05 1.3E-09 59.8 4.3 98 73-186 3-100 (148)
142 KOG0330|consensus 97.6 3.4E-05 7.4E-10 70.1 2.6 39 293-331 90-128 (476)
143 KOG0924|consensus 97.6 0.00075 1.6E-08 65.7 11.6 99 61-169 358-457 (1042)
144 PRK12903 secA preprotein trans 97.5 0.0005 1.1E-08 69.4 10.0 105 55-169 75-179 (925)
145 PF00580 UvrD-helicase: UvrD/R 97.5 0.00037 7.9E-09 63.4 7.9 70 60-132 1-70 (315)
146 KOG1802|consensus 97.5 0.00029 6.2E-09 68.3 7.0 85 51-143 402-486 (935)
147 PF00271 Helicase_C: Helicase 97.5 2E-05 4.3E-10 56.3 -0.7 50 263-312 6-76 (78)
148 COG4096 HsdR Type I site-speci 97.5 0.00059 1.3E-08 68.0 9.1 117 59-187 165-291 (875)
149 PF13604 AAA_30: AAA domain; P 97.4 0.00098 2.1E-08 56.7 8.4 63 59-126 1-65 (196)
150 TIGR00376 DNA helicase, putati 97.4 0.0013 2.8E-08 65.9 10.3 75 59-142 157-232 (637)
151 KOG0340|consensus 97.4 6.7E-05 1.4E-09 67.5 1.1 38 293-330 36-73 (442)
152 PF14617 CMS1: U3-containing 9 97.3 0.00023 4.9E-09 62.4 4.3 82 105-187 124-207 (252)
153 PF12340 DUF3638: Protein of u 97.3 0.0065 1.4E-07 52.4 12.6 130 37-173 3-146 (229)
154 KOG0346|consensus 97.2 0.00015 3.3E-09 67.0 2.2 34 293-326 48-81 (569)
155 KOG1803|consensus 97.1 0.001 2.3E-08 64.0 6.7 65 59-128 185-250 (649)
156 cd00079 HELICc Helicase superf 97.1 0.00027 5.9E-09 55.3 2.3 67 245-311 31-120 (131)
157 PLN03142 Probable chromatin-re 97.1 0.0068 1.5E-07 63.4 12.6 108 59-171 169-283 (1033)
158 PRK15483 type III restriction- 97.0 0.008 1.7E-07 62.0 12.3 51 75-128 60-110 (986)
159 KOG0328|consensus 96.9 0.00058 1.3E-08 59.8 2.8 124 157-292 95-233 (400)
160 PF02562 PhoH: PhoH-like prote 96.9 0.0019 4.2E-08 55.0 5.2 59 58-119 3-61 (205)
161 KOG0331|consensus 96.8 0.00091 2E-08 64.2 3.1 82 157-250 165-246 (519)
162 PRK14722 flhF flagellar biosyn 96.7 0.0062 1.3E-07 56.8 7.8 127 37-168 81-227 (374)
163 KOG0925|consensus 96.7 0.023 5E-07 53.7 11.4 92 34-129 22-113 (699)
164 KOG0334|consensus 96.6 0.00084 1.8E-08 68.3 1.4 39 293-332 394-432 (997)
165 smart00490 HELICc helicase sup 96.6 0.00082 1.8E-08 47.7 0.8 54 258-311 3-79 (82)
166 PRK05298 excinuclease ABC subu 96.5 0.025 5.5E-07 57.0 11.6 67 56-131 10-81 (652)
167 KOG1123|consensus 96.5 0.0018 3.9E-08 61.1 3.0 97 59-168 302-401 (776)
168 TIGR02562 cas3_yersinia CRISPR 96.5 0.049 1.1E-06 56.6 12.9 81 61-144 410-498 (1110)
169 KOG0342|consensus 96.4 0.023 5E-07 53.6 9.6 96 156-263 153-259 (543)
170 COG4889 Predicted helicase [Ge 96.4 0.012 2.7E-07 59.2 8.1 141 37-186 140-309 (1518)
171 KOG0348|consensus 96.4 0.0018 3.8E-08 61.6 2.1 36 293-328 166-201 (708)
172 COG2805 PilT Tfp pilus assembl 96.4 0.015 3.3E-07 51.8 7.7 50 33-102 102-152 (353)
173 PRK11054 helD DNA helicase IV; 96.3 0.02 4.4E-07 57.9 9.3 80 58-140 195-274 (684)
174 TIGR03499 FlhF flagellar biosy 96.2 0.036 7.8E-07 49.9 9.7 18 75-92 195-212 (282)
175 PRK10536 hypothetical protein; 96.2 0.016 3.5E-07 51.0 7.0 60 56-118 56-115 (262)
176 PRK05703 flhF flagellar biosyn 96.2 0.03 6.5E-07 53.4 9.3 87 74-167 221-310 (424)
177 COG1484 DnaC DNA replication p 96.2 0.027 5.9E-07 49.9 8.3 69 55-129 79-154 (254)
178 PRK13894 conjugal transfer ATP 96.1 0.023 5E-07 52.0 7.7 66 49-119 124-190 (319)
179 COG0513 SrmB Superfamily II DN 96.0 0.012 2.5E-07 57.8 5.4 92 160-263 102-203 (513)
180 PRK10919 ATP-dependent DNA hel 95.9 0.02 4.3E-07 58.0 7.2 70 59-131 2-71 (672)
181 PRK13833 conjugal transfer pro 95.9 0.038 8.3E-07 50.6 8.0 65 51-120 122-187 (323)
182 PRK12727 flagellar biosynthesi 95.8 0.08 1.7E-06 51.5 10.3 90 73-168 349-440 (559)
183 PRK12901 secA preprotein trans 95.8 0.023 5E-07 58.7 6.9 100 60-168 170-270 (1112)
184 KOG0345|consensus 95.7 0.03 6.6E-07 52.6 6.9 108 158-277 80-202 (567)
185 KOG0385|consensus 95.7 0.13 2.9E-06 51.3 11.3 121 59-186 167-294 (971)
186 COG0610 Type I site-specific r 95.6 0.07 1.5E-06 56.1 10.0 106 75-187 274-381 (962)
187 PRK12723 flagellar biosynthesi 95.6 0.054 1.2E-06 50.9 8.3 91 75-169 175-267 (388)
188 KOG0744|consensus 95.6 0.071 1.5E-06 48.1 8.5 110 76-186 179-324 (423)
189 KOG0338|consensus 95.6 0.028 6.2E-07 53.4 6.1 81 158-250 253-334 (691)
190 PRK13889 conjugal transfer rel 95.6 0.074 1.6E-06 55.7 9.8 65 54-124 342-407 (988)
191 COG1419 FlhF Flagellar GTP-bin 95.5 0.067 1.5E-06 49.9 8.3 89 74-167 203-292 (407)
192 PRK04837 ATP-dependent RNA hel 95.5 0.007 1.5E-07 57.8 1.9 36 293-328 37-72 (423)
193 PRK05973 replicative DNA helic 95.5 0.041 8.9E-07 48.1 6.4 84 40-130 21-114 (237)
194 TIGR01074 rep ATP-dependent DN 95.5 0.043 9.4E-07 55.6 7.6 69 60-131 2-70 (664)
195 TIGR02782 TrbB_P P-type conjug 95.5 0.077 1.7E-06 48.2 8.4 67 49-120 108-175 (299)
196 PF02399 Herpes_ori_bp: Origin 95.4 0.12 2.6E-06 52.3 10.1 49 77-129 52-100 (824)
197 PF01695 IstB_IS21: IstB-like 95.3 0.038 8.2E-07 46.2 5.6 46 72-123 45-90 (178)
198 TIGR01448 recD_rel helicase, p 95.3 0.083 1.8E-06 54.0 8.9 68 54-125 319-386 (720)
199 TIGR01075 uvrD DNA helicase II 95.3 0.05 1.1E-06 55.7 7.4 72 58-132 3-74 (715)
200 PRK11889 flhF flagellar biosyn 95.3 0.085 1.8E-06 49.5 8.0 87 75-169 242-333 (436)
201 TIGR02785 addA_Gpos recombinat 95.2 0.057 1.2E-06 58.5 8.0 66 60-129 2-67 (1232)
202 KOG0339|consensus 95.2 0.018 3.9E-07 54.7 3.5 123 156-290 295-432 (731)
203 PRK11776 ATP-dependent RNA hel 95.2 0.011 2.5E-07 57.0 2.4 37 294-330 34-70 (460)
204 PRK14723 flhF flagellar biosyn 95.2 0.11 2.4E-06 52.8 9.2 89 76-169 187-276 (767)
205 COG4962 CpaF Flp pilus assembl 95.2 0.046 1E-06 49.8 6.0 68 56-129 154-222 (355)
206 KOG0335|consensus 95.1 0.013 2.9E-07 55.6 2.4 37 293-329 103-139 (482)
207 PRK13851 type IV secretion sys 95.0 0.04 8.7E-07 51.0 5.2 46 69-120 157-202 (344)
208 PRK11773 uvrD DNA-dependent he 95.0 0.067 1.4E-06 54.8 7.3 72 58-132 8-79 (721)
209 KOG0349|consensus 95.0 0.0098 2.1E-07 55.3 1.1 46 283-328 18-66 (725)
210 PRK06835 DNA replication prote 94.9 0.13 2.8E-06 47.4 8.3 46 74-125 183-228 (329)
211 PF05970 PIF1: PIF1-like helic 94.9 0.08 1.7E-06 49.6 7.1 65 60-129 2-74 (364)
212 TIGR02768 TraA_Ti Ti-type conj 94.9 0.18 4E-06 51.7 10.2 76 44-125 338-414 (744)
213 PRK06995 flhF flagellar biosyn 94.8 0.092 2E-06 50.7 7.3 88 75-169 257-347 (484)
214 PRK12726 flagellar biosynthesi 94.8 0.18 3.9E-06 47.1 8.9 88 74-169 206-298 (407)
215 TIGR01447 recD exodeoxyribonuc 94.8 0.14 3.1E-06 50.8 8.7 67 61-129 147-215 (586)
216 PRK12377 putative replication 94.8 0.24 5.3E-06 43.6 9.3 46 75-126 102-147 (248)
217 KOG1133|consensus 94.7 0.049 1.1E-06 53.7 5.0 45 57-102 14-62 (821)
218 PRK10875 recD exonuclease V su 94.6 0.16 3.5E-06 50.7 8.8 66 61-129 154-221 (615)
219 TIGR00959 ffh signal recogniti 94.6 0.74 1.6E-05 44.0 12.7 86 76-168 101-194 (428)
220 COG3973 Superfamily I DNA and 94.6 0.12 2.6E-06 50.4 7.3 94 40-133 185-286 (747)
221 TIGR03877 thermo_KaiC_1 KaiC d 94.6 0.067 1.4E-06 46.9 5.3 52 74-131 21-72 (237)
222 PRK13900 type IV secretion sys 94.6 0.12 2.7E-06 47.6 7.2 44 71-120 157-200 (332)
223 TIGR00064 ftsY signal recognit 94.5 0.33 7.2E-06 43.5 9.8 87 75-169 73-167 (272)
224 PRK07952 DNA replication prote 94.5 0.47 1E-05 41.7 10.5 45 75-125 100-144 (244)
225 TIGR02525 plasmid_TraJ plasmid 94.5 0.097 2.1E-06 49.0 6.5 27 74-101 149-175 (372)
226 KOG0926|consensus 94.5 0.32 7E-06 49.0 10.1 98 65-175 262-367 (1172)
227 PRK06921 hypothetical protein; 94.5 0.38 8.2E-06 42.9 10.0 48 73-125 116-163 (266)
228 KOG0329|consensus 94.4 0.024 5.2E-07 49.2 2.1 77 155-243 108-185 (387)
229 cd01126 TraG_VirD4 The TraG/Tr 94.4 0.028 6.1E-07 53.0 2.7 47 76-129 1-47 (384)
230 PF02534 T4SS-DNA_transf: Type 94.4 0.045 9.7E-07 53.1 4.1 49 75-130 45-93 (469)
231 COG3587 Restriction endonuclea 94.3 0.11 2.3E-06 52.5 6.6 89 75-168 75-171 (985)
232 PRK13764 ATPase; Provisional 94.3 0.12 2.6E-06 51.3 6.8 28 73-101 256-283 (602)
233 PRK10590 ATP-dependent RNA hel 94.3 0.026 5.6E-07 54.5 2.2 35 294-328 31-65 (456)
234 TIGR01073 pcrA ATP-dependent D 94.3 0.13 2.8E-06 52.7 7.4 71 58-131 3-73 (726)
235 PF00448 SRP54: SRP54-type pro 94.2 0.1 2.2E-06 44.3 5.5 85 77-169 4-96 (196)
236 cd01124 KaiC KaiC is a circadi 94.2 0.096 2.1E-06 43.7 5.3 49 77-131 2-50 (187)
237 KOG0337|consensus 94.2 0.067 1.4E-06 49.8 4.5 82 157-250 90-171 (529)
238 KOG1805|consensus 94.2 0.41 8.8E-06 49.2 10.2 79 43-130 657-736 (1100)
239 PRK10436 hypothetical protein; 94.2 0.24 5.1E-06 47.8 8.4 39 62-101 204-244 (462)
240 COG2804 PulE Type II secretory 94.1 0.085 1.8E-06 50.5 5.2 40 61-101 243-284 (500)
241 PRK06526 transposase; Provisio 94.1 0.098 2.1E-06 46.3 5.4 47 71-123 95-141 (254)
242 PRK14721 flhF flagellar biosyn 94.1 0.14 3.1E-06 48.5 6.8 92 74-169 191-282 (420)
243 PRK06731 flhF flagellar biosyn 94.1 0.76 1.6E-05 41.1 11.0 87 74-169 75-167 (270)
244 KOG0333|consensus 94.0 0.024 5.2E-07 54.0 1.4 35 293-327 274-308 (673)
245 PRK08181 transposase; Validate 94.0 0.22 4.8E-06 44.5 7.5 58 61-124 89-150 (269)
246 TIGR01425 SRP54_euk signal rec 94.0 0.37 8.1E-06 45.8 9.3 84 77-169 103-195 (429)
247 KOG0326|consensus 93.8 0.016 3.4E-07 52.0 -0.3 40 293-332 114-153 (459)
248 PRK11634 ATP-dependent RNA hel 93.7 0.039 8.5E-07 55.4 2.3 36 294-329 36-71 (629)
249 PRK01297 ATP-dependent RNA hel 93.7 0.034 7.3E-07 54.0 1.8 35 294-328 117-151 (475)
250 cd01129 PulE-GspE PulE/GspE Th 93.6 0.24 5.2E-06 44.1 7.0 45 52-100 59-105 (264)
251 cd01130 VirB11-like_ATPase Typ 93.6 0.12 2.7E-06 43.4 4.8 32 60-91 10-42 (186)
252 PF06862 DUF1253: Protein of u 93.6 0.3 6.5E-06 46.5 7.8 47 246-292 304-358 (442)
253 PRK13897 type IV secretion sys 93.5 0.081 1.8E-06 52.6 4.1 56 75-141 159-214 (606)
254 KOG1132|consensus 93.5 0.29 6.3E-06 49.7 7.8 77 54-131 17-134 (945)
255 PRK14974 cell division protein 93.4 2 4.4E-05 39.6 12.9 85 77-169 143-235 (336)
256 PRK00771 signal recognition pa 93.4 0.39 8.5E-06 46.0 8.4 86 76-169 97-188 (437)
257 PF09848 DUF2075: Uncharacteri 93.3 0.17 3.7E-06 47.1 5.8 51 76-129 3-53 (352)
258 TIGR02533 type_II_gspE general 93.3 0.2 4.4E-06 48.7 6.4 46 52-101 221-268 (486)
259 COG1219 ClpX ATP-dependent pro 93.2 0.056 1.2E-06 48.7 2.2 18 75-92 98-115 (408)
260 TIGR02524 dot_icm_DotB Dot/Icm 93.2 0.24 5.2E-06 46.2 6.5 27 73-100 133-159 (358)
261 KOG0344|consensus 93.2 0.44 9.6E-06 46.2 8.2 99 77-187 360-462 (593)
262 PRK10867 signal recognition pa 93.1 1.5 3.2E-05 42.0 11.8 86 77-169 103-196 (433)
263 PRK10416 signal recognition pa 93.1 0.83 1.8E-05 41.9 9.8 86 75-169 115-209 (318)
264 PRK04537 ATP-dependent RNA hel 93.1 0.41 9E-06 47.6 8.4 71 107-187 257-331 (572)
265 COG0653 SecA Preprotein transl 93.1 0.42 9.1E-06 48.7 8.3 103 56-168 78-180 (822)
266 TIGR03817 DECH_helic helicase/ 93.0 0.049 1.1E-06 55.8 1.9 35 294-328 44-78 (742)
267 KOG0387|consensus 92.9 0.98 2.1E-05 45.6 10.3 81 59-146 205-291 (923)
268 KOG0341|consensus 92.8 0.037 8E-07 50.9 0.5 31 293-323 199-229 (610)
269 COG0630 VirB11 Type IV secreto 92.8 0.35 7.6E-06 44.2 6.9 44 57-101 125-169 (312)
270 PRK13850 type IV secretion sys 92.8 0.13 2.7E-06 51.9 4.2 48 75-129 140-187 (670)
271 PF00437 T2SE: Type II/IV secr 92.8 0.16 3.5E-06 45.3 4.6 86 64-164 116-204 (270)
272 PRK08699 DNA polymerase III su 92.8 1.2 2.6E-05 41.0 10.4 35 61-95 3-42 (325)
273 TIGR01420 pilT_fam pilus retra 92.7 0.37 8E-06 44.7 7.0 43 74-120 122-164 (343)
274 TIGR02538 type_IV_pilB type IV 92.7 0.19 4E-06 50.0 5.3 45 52-100 295-341 (564)
275 PRK08116 hypothetical protein; 92.7 0.73 1.6E-05 41.2 8.6 45 76-126 116-160 (268)
276 PTZ00110 helicase; Provisional 92.7 1.2 2.5E-05 44.2 10.9 71 106-186 376-450 (545)
277 PF12846 AAA_10: AAA-like doma 92.7 0.39 8.5E-06 43.1 7.1 42 75-121 2-43 (304)
278 PRK08769 DNA polymerase III su 92.7 1.3 2.8E-05 40.7 10.3 36 57-92 2-44 (319)
279 PRK04328 hypothetical protein; 92.7 0.22 4.8E-06 43.9 5.2 53 73-131 22-74 (249)
280 PRK05707 DNA polymerase III su 92.6 1.1 2.4E-05 41.2 9.9 115 60-174 4-155 (328)
281 PRK13826 Dtr system oriT relax 92.6 1 2.2E-05 47.9 10.7 77 43-125 366-443 (1102)
282 KOG0347|consensus 92.5 0.095 2E-06 50.4 2.8 68 160-239 266-333 (731)
283 PRK09183 transposase/IS protei 92.4 0.52 1.1E-05 41.9 7.3 47 71-123 99-145 (259)
284 cd00009 AAA The AAA+ (ATPases 92.2 0.66 1.4E-05 36.1 7.1 16 74-89 19-34 (151)
285 cd03115 SRP The signal recogni 92.1 1.7 3.7E-05 35.7 9.7 84 77-168 3-94 (173)
286 smart00382 AAA ATPases associa 92.1 0.19 4E-06 38.9 3.7 41 74-119 2-42 (148)
287 KOG0390|consensus 91.9 2.2 4.9E-05 43.4 11.7 126 58-187 237-382 (776)
288 PTZ00424 helicase 45; Provisio 91.9 0.094 2E-06 49.6 2.1 34 295-328 59-92 (401)
289 TIGR03743 SXT_TraD conjugative 91.9 0.49 1.1E-05 47.6 7.2 53 75-132 177-231 (634)
290 COG1205 Distinct helicase fami 91.8 0.15 3.2E-06 53.0 3.4 44 269-330 71-114 (851)
291 TIGR03819 heli_sec_ATPase heli 91.7 0.5 1.1E-05 43.8 6.5 64 49-120 154-218 (340)
292 PRK08533 flagellar accessory p 91.7 0.39 8.4E-06 41.9 5.5 54 72-131 22-75 (230)
293 PRK12724 flagellar biosynthesi 91.6 0.66 1.4E-05 44.0 7.2 84 76-169 225-312 (432)
294 TIGR02640 gas_vesic_GvpN gas v 91.5 0.19 4.2E-06 44.7 3.6 28 65-92 12-39 (262)
295 COG1222 RPT1 ATP-dependent 26S 91.5 0.26 5.7E-06 45.2 4.3 59 31-92 142-203 (406)
296 TIGR03881 KaiC_arch_4 KaiC dom 91.4 0.43 9.3E-06 41.4 5.6 52 73-130 19-70 (229)
297 cd01120 RecA-like_NTPases RecA 91.4 1.7 3.8E-05 34.6 8.9 39 77-120 2-40 (165)
298 KOG4439|consensus 91.4 0.97 2.1E-05 45.0 8.2 107 60-168 326-442 (901)
299 PRK11823 DNA repair protein Ra 91.4 1.3 2.8E-05 42.7 9.2 84 74-165 80-164 (446)
300 KOG1002|consensus 91.2 1.8 3.9E-05 41.5 9.5 105 60-174 185-294 (791)
301 PRK11192 ATP-dependent RNA hel 91.1 0.84 1.8E-05 43.7 7.7 70 107-186 245-318 (434)
302 TIGR03878 thermo_KaiC_2 KaiC d 91.0 0.41 9E-06 42.5 5.1 38 73-115 35-72 (259)
303 PRK08939 primosomal protein Dn 91.0 1.2 2.6E-05 40.6 8.1 47 74-126 156-202 (306)
304 TIGR03754 conj_TOL_TraD conjug 90.9 0.65 1.4E-05 46.4 6.8 54 75-133 181-236 (643)
305 PRK14712 conjugal transfer nic 90.9 0.9 2E-05 50.1 8.3 62 59-123 835-900 (1623)
306 KOG0327|consensus 90.8 0.11 2.4E-06 47.7 1.3 124 157-292 94-233 (397)
307 PLN00206 DEAD-box ATP-dependen 90.8 0.35 7.6E-06 47.6 4.8 69 156-236 195-263 (518)
308 KOG0332|consensus 90.7 0.1 2.3E-06 47.8 1.0 40 294-333 120-161 (477)
309 PF06745 KaiC: KaiC; InterPro 90.6 0.35 7.7E-06 41.8 4.2 54 73-131 18-71 (226)
310 COG5008 PilU Tfp pilus assembl 90.6 0.25 5.4E-06 43.5 3.1 37 35-90 106-143 (375)
311 TIGR02788 VirB11 P-type DNA tr 90.6 0.45 9.8E-06 43.4 5.1 20 71-90 141-160 (308)
312 PF10412 TrwB_AAD_bind: Type I 90.5 0.33 7.2E-06 45.8 4.2 52 69-125 10-61 (386)
313 PRK13822 conjugal transfer cou 90.5 0.3 6.5E-06 49.1 4.1 48 75-129 225-272 (641)
314 KOG0336|consensus 90.4 0.29 6.2E-06 45.6 3.5 69 156-237 293-361 (629)
315 COG0467 RAD55 RecA-superfamily 90.4 0.48 1E-05 42.0 5.0 55 73-133 22-76 (260)
316 PRK13876 conjugal transfer cou 90.4 0.19 4.2E-06 50.6 2.6 48 75-129 145-192 (663)
317 PRK13709 conjugal transfer nic 90.3 1.1 2.3E-05 50.0 8.4 65 59-124 967-1033(1747)
318 cd01127 TrwB Bacterial conjuga 90.3 0.26 5.7E-06 46.9 3.3 50 68-122 36-85 (410)
319 TIGR02767 TraG-Ti Ti-type conj 90.2 0.36 7.8E-06 48.3 4.4 49 75-130 212-260 (623)
320 cd01131 PilT Pilus retraction 90.2 0.48 1E-05 40.2 4.6 39 77-119 4-42 (198)
321 TIGR02760 TraI_TIGR conjugativ 90.2 0.98 2.1E-05 51.3 8.1 62 59-124 1019-1085(1960)
322 PRK13880 conjugal transfer cou 90.1 0.24 5.2E-06 49.9 3.0 46 75-127 176-221 (636)
323 TIGR02655 circ_KaiC circadian 89.9 0.54 1.2E-05 45.8 5.3 60 66-131 250-314 (484)
324 KOG0741|consensus 89.9 0.39 8.4E-06 46.4 4.0 58 27-91 206-273 (744)
325 PF13555 AAA_29: P-loop contai 89.9 0.29 6.3E-06 33.1 2.4 18 73-90 22-39 (62)
326 TIGR00614 recQ_fam ATP-depende 89.9 1.3 2.8E-05 43.0 7.9 71 107-187 226-300 (470)
327 TIGR02688 conserved hypothetic 89.8 0.63 1.4E-05 44.1 5.3 52 42-93 170-228 (449)
328 TIGR03420 DnaA_homol_Hda DnaA 89.7 0.85 1.8E-05 39.2 5.9 20 74-93 38-57 (226)
329 cd01122 GP4d_helicase GP4d_hel 89.6 0.36 7.8E-06 43.0 3.5 79 46-129 2-80 (271)
330 KOG0738|consensus 89.5 0.87 1.9E-05 42.4 5.9 57 34-90 180-261 (491)
331 PF12775 AAA_7: P-loop contain 89.5 0.24 5.2E-06 44.4 2.3 27 66-92 24-51 (272)
332 PTZ00454 26S protease regulato 89.4 0.27 5.7E-06 46.6 2.7 57 32-91 137-196 (398)
333 PHA02533 17 large terminase pr 89.4 2 4.4E-05 42.3 8.8 69 60-131 60-128 (534)
334 PRK10689 transcription-repair 89.3 1.3 2.9E-05 47.6 8.0 72 107-186 809-884 (1147)
335 PRK04296 thymidine kinase; Pro 89.3 0.75 1.6E-05 38.8 5.0 36 75-115 3-38 (190)
336 TIGR03880 KaiC_arch_3 KaiC dom 89.1 0.79 1.7E-05 39.6 5.2 52 74-131 16-67 (224)
337 PF13872 AAA_34: P-loop contai 89.0 5.9 0.00013 35.8 10.6 119 40-173 24-152 (303)
338 PRK05642 DNA replication initi 88.9 1.6 3.4E-05 38.2 7.0 43 75-123 46-88 (234)
339 TIGR02237 recomb_radB DNA repa 88.7 0.64 1.4E-05 39.6 4.3 38 74-116 12-49 (209)
340 TIGR00580 mfd transcription-re 88.6 1.4 3.1E-05 46.3 7.5 73 106-186 659-735 (926)
341 PHA02244 ATPase-like protein 88.5 0.62 1.3E-05 43.4 4.3 26 66-91 111-136 (383)
342 cd01121 Sms Sms (bacterial rad 88.3 3.8 8.2E-05 38.5 9.4 84 74-165 82-166 (372)
343 COG1875 NYN ribonuclease and A 88.1 1 2.2E-05 41.7 5.3 65 55-121 224-290 (436)
344 PRK12899 secA preprotein trans 88.1 0.32 6.9E-06 50.3 2.3 34 294-327 100-133 (970)
345 PF13401 AAA_22: AAA domain; P 88.0 0.88 1.9E-05 35.2 4.4 23 74-96 4-26 (131)
346 COG1201 Lhr Lhr-like helicases 88.0 0.28 6.2E-06 50.2 1.9 37 293-329 29-65 (814)
347 TIGR00416 sms DNA repair prote 87.9 2.6 5.6E-05 40.7 8.3 84 74-165 94-178 (454)
348 PRK08727 hypothetical protein; 87.9 1.5 3.3E-05 38.2 6.2 49 76-130 43-91 (233)
349 PTZ00035 Rad51 protein; Provis 87.8 1.9 4.1E-05 39.9 7.1 39 77-115 121-160 (337)
350 PRK11057 ATP-dependent DNA hel 87.6 1.4 3E-05 44.3 6.5 72 106-187 235-310 (607)
351 TIGR02655 circ_KaiC circadian 87.6 1 2.2E-05 43.9 5.4 55 73-132 20-74 (484)
352 PRK06871 DNA polymerase III su 87.5 5 0.00011 36.9 9.6 114 61-174 4-156 (325)
353 cd00544 CobU Adenosylcobinamid 87.5 2.5 5.4E-05 34.9 7.0 45 77-129 2-46 (169)
354 PF04665 Pox_A32: Poxvirus A32 87.4 0.77 1.7E-05 40.2 4.0 25 76-101 15-39 (241)
355 KOG0350|consensus 87.4 0.25 5.4E-06 47.1 1.0 33 296-328 178-210 (620)
356 PRK11331 5-methylcytosine-spec 87.3 0.74 1.6E-05 44.0 4.1 33 60-92 180-212 (459)
357 KOG4284|consensus 87.1 0.33 7.1E-06 47.8 1.6 75 157-244 93-168 (980)
358 PRK06067 flagellar accessory p 87.0 1.5 3.2E-05 38.1 5.7 52 74-131 25-76 (234)
359 KOG0060|consensus 86.9 0.23 5E-06 48.3 0.5 19 71-89 458-476 (659)
360 KOG1533|consensus 86.8 0.52 1.1E-05 40.8 2.5 24 77-101 5-28 (290)
361 PRK06964 DNA polymerase III su 86.6 4.7 0.0001 37.4 8.9 34 61-94 3-41 (342)
362 KOG1131|consensus 86.6 3.4 7.3E-05 40.0 7.9 75 55-130 12-90 (755)
363 KOG1806|consensus 86.5 1.1 2.4E-05 46.5 5.0 72 56-130 735-806 (1320)
364 COG1224 TIP49 DNA helicase TIP 86.5 0.49 1.1E-05 43.5 2.4 28 72-100 63-90 (450)
365 PF07728 AAA_5: AAA domain (dy 86.5 0.4 8.7E-06 37.9 1.7 16 76-91 1-16 (139)
366 KOG2340|consensus 86.4 3.6 7.8E-05 39.9 8.0 75 58-132 215-318 (698)
367 KOG0389|consensus 86.4 3.7 8E-05 41.6 8.4 103 56-166 397-508 (941)
368 TIGR00382 clpX endopeptidase C 86.2 1.1 2.3E-05 42.6 4.6 18 75-92 117-134 (413)
369 PF09439 SRPRB: Signal recogni 86.2 0.52 1.1E-05 39.4 2.2 21 74-94 3-23 (181)
370 PHA02535 P terminase ATPase su 86.2 5.3 0.00012 39.5 9.4 86 43-132 122-207 (581)
371 COG1444 Predicted P-loop ATPas 86.2 3.6 7.9E-05 41.9 8.4 82 51-135 206-289 (758)
372 KOG0745|consensus 86.2 0.48 1E-05 44.7 2.1 50 75-131 227-280 (564)
373 TIGR01389 recQ ATP-dependent D 86.1 2.2 4.8E-05 42.7 7.0 71 107-187 224-298 (591)
374 PRK13700 conjugal transfer pro 86.0 0.86 1.9E-05 46.0 3.9 74 46-124 157-230 (732)
375 cd01394 radB RadB. The archaea 85.8 1.2 2.6E-05 38.2 4.4 36 74-114 19-54 (218)
376 PRK07993 DNA polymerase III su 85.8 6.7 0.00015 36.2 9.5 115 60-174 3-157 (334)
377 PF08423 Rad51: Rad51; InterP 85.7 1.2 2.6E-05 39.5 4.4 56 67-122 26-87 (256)
378 TIGR02759 TraD_Ftype type IV c 85.7 0.82 1.8E-05 45.4 3.7 42 72-118 174-215 (566)
379 PTZ00361 26 proteosome regulat 85.7 0.55 1.2E-05 45.0 2.3 57 33-92 176-235 (438)
380 cd00984 DnaB_C DnaB helicase C 85.6 1.1 2.5E-05 38.9 4.3 39 72-114 11-49 (242)
381 PLN03187 meiotic recombination 85.6 1.9 4.1E-05 40.0 5.8 41 77-117 129-170 (344)
382 TIGR03015 pepcterm_ATPase puta 85.6 2.5 5.4E-05 37.4 6.5 33 60-92 24-61 (269)
383 PRK05800 cobU adenosylcobinami 85.4 4.9 0.00011 33.2 7.7 44 76-127 3-46 (170)
384 TIGR01547 phage_term_2 phage t 85.4 2.7 5.8E-05 39.8 6.9 54 77-132 4-58 (396)
385 TIGR02760 TraI_TIGR conjugativ 85.3 3.3 7.2E-05 47.2 8.5 63 59-126 429-493 (1960)
386 PF01935 DUF87: Domain of unkn 85.2 1.3 2.9E-05 38.2 4.4 46 74-123 23-68 (229)
387 PF13207 AAA_17: AAA domain; P 85.2 0.56 1.2E-05 35.9 1.8 16 77-92 2-17 (121)
388 PF00004 AAA: ATPase family as 85.1 0.63 1.4E-05 36.0 2.1 16 77-92 1-16 (132)
389 TIGR02012 tigrfam_recA protein 85.1 1.9 4.1E-05 39.6 5.4 43 74-121 55-97 (321)
390 PF03193 DUF258: Protein of un 85.0 1.4 3.1E-05 36.0 4.2 51 46-101 2-57 (161)
391 PRK09361 radB DNA repair and r 84.8 1.4 3E-05 38.0 4.3 38 74-116 23-60 (225)
392 PRK14729 miaA tRNA delta(2)-is 84.8 0.64 1.4E-05 42.2 2.2 17 76-92 6-22 (300)
393 TIGR03689 pup_AAA proteasome A 84.7 0.65 1.4E-05 45.3 2.4 55 34-91 176-233 (512)
394 PF13481 AAA_25: AAA domain; P 84.7 3.1 6.8E-05 34.7 6.4 58 73-131 31-93 (193)
395 PF01078 Mg_chelatase: Magnesi 84.6 1.2 2.6E-05 38.0 3.7 27 66-92 13-40 (206)
396 cd00983 recA RecA is a bacter 84.5 2 4.4E-05 39.4 5.4 43 74-121 55-97 (325)
397 KOG0733|consensus 84.4 0.79 1.7E-05 45.1 2.8 54 36-92 507-563 (802)
398 PRK13531 regulatory ATPase Rav 84.4 1.1 2.3E-05 43.4 3.6 30 63-92 28-57 (498)
399 TIGR01241 FtsH_fam ATP-depende 84.2 0.75 1.6E-05 45.0 2.6 55 34-91 49-105 (495)
400 PF01580 FtsK_SpoIIIE: FtsK/Sp 84.2 1.5 3.4E-05 37.1 4.3 26 75-100 39-64 (205)
401 PF06068 TIP49: TIP49 C-termin 84.1 0.65 1.4E-05 43.1 2.0 37 73-114 49-85 (398)
402 KOG0384|consensus 84.0 4.1 8.8E-05 43.3 7.7 122 34-170 351-488 (1373)
403 COG0606 Predicted ATPase with 83.9 1 2.3E-05 43.0 3.3 26 66-91 189-215 (490)
404 cd01363 Motor_domain Myosin an 83.7 0.73 1.6E-05 38.6 2.1 25 66-90 14-40 (186)
405 TIGR03744 traC_PFL_4706 conjug 83.4 1.7 3.6E-05 45.8 4.9 40 75-118 476-515 (893)
406 PF13238 AAA_18: AAA domain; P 83.0 0.77 1.7E-05 35.3 1.8 16 77-92 1-16 (129)
407 PF13671 AAA_33: AAA domain; P 82.9 0.78 1.7E-05 36.2 1.8 14 77-90 2-15 (143)
408 COG0552 FtsY Signal recognitio 82.9 8.5 0.00018 35.3 8.5 85 77-169 142-234 (340)
409 TIGR02236 recomb_radA DNA repa 82.8 1.6 3.4E-05 39.8 4.0 43 75-117 96-139 (310)
410 PRK08084 DNA replication initi 82.8 2.7 5.8E-05 36.7 5.3 36 75-115 46-81 (235)
411 PF07724 AAA_2: AAA domain (Cd 82.7 0.85 1.8E-05 37.8 2.0 15 76-90 5-19 (171)
412 PRK09354 recA recombinase A; P 82.6 2.6 5.5E-05 39.1 5.3 43 74-121 60-102 (349)
413 TIGR02238 recomb_DMC1 meiotic 82.6 2.1 4.4E-05 39.2 4.7 55 75-129 97-153 (313)
414 COG1074 RecB ATP-dependent exo 82.5 2.4 5.1E-05 45.9 5.7 58 72-129 14-71 (1139)
415 PRK08903 DnaA regulatory inact 82.3 2.3 5E-05 36.7 4.7 19 74-92 42-60 (227)
416 PF00308 Bac_DnaA: Bacterial d 82.3 3.3 7.1E-05 35.7 5.6 48 77-128 37-84 (219)
417 TIGR01970 DEAH_box_HrpB ATP-de 82.2 7.2 0.00016 40.6 8.9 74 107-187 209-286 (819)
418 TIGR02746 TraC-F-type type-IV 82.1 3.6 7.8E-05 42.8 6.8 40 75-119 431-470 (797)
419 PF05729 NACHT: NACHT domain 82.1 2.6 5.7E-05 33.8 4.7 45 77-122 3-48 (166)
420 TIGR02880 cbbX_cfxQ probable R 82.1 0.96 2.1E-05 40.8 2.3 19 74-92 58-76 (284)
421 TIGR00150 HI0065_YjeE ATPase, 81.9 0.96 2.1E-05 35.8 1.9 43 73-123 21-63 (133)
422 CHL00181 cbbX CbbX; Provisiona 81.9 3.2 7E-05 37.4 5.6 21 74-94 59-79 (287)
423 PRK13767 ATP-dependent helicas 81.8 6.8 0.00015 41.2 8.7 75 107-187 284-364 (876)
424 cd00268 DEADc DEAD-box helicas 81.8 0.93 2E-05 38.2 2.0 32 298-329 33-64 (203)
425 KOG1807|consensus 81.8 5.8 0.00013 40.2 7.6 82 48-129 365-449 (1025)
426 PRK06893 DNA replication initi 81.8 2.1 4.6E-05 37.1 4.3 35 76-115 41-75 (229)
427 PRK09302 circadian clock prote 81.7 2.4 5.3E-05 41.6 5.1 52 74-131 273-324 (509)
428 COG0210 UvrD Superfamily I DNA 81.7 3.9 8.5E-05 41.5 6.7 71 59-132 2-72 (655)
429 KOG0392|consensus 81.6 15 0.00033 39.4 10.7 106 61-169 977-1090(1549)
430 TIGR02881 spore_V_K stage V sp 81.4 0.97 2.1E-05 40.1 2.0 20 75-94 43-62 (261)
431 TIGR01242 26Sp45 26S proteasom 81.2 1.2 2.6E-05 41.6 2.7 57 33-92 115-174 (364)
432 PF14532 Sigma54_activ_2: Sigm 81.1 2.1 4.5E-05 33.9 3.7 28 65-92 12-39 (138)
433 PRK03992 proteasome-activating 81.0 1.1 2.4E-05 42.4 2.4 57 33-92 124-183 (389)
434 PLN02165 adenylate isopentenyl 80.8 1.3 2.8E-05 40.7 2.6 21 73-93 42-62 (334)
435 PRK04301 radA DNA repair and r 80.8 2.2 4.7E-05 39.1 4.1 43 75-117 103-146 (317)
436 COG4185 Uncharacterized protei 80.6 0.67 1.5E-05 37.7 0.7 37 77-122 5-41 (187)
437 PF02456 Adeno_IVa2: Adenoviru 80.6 1.7 3.7E-05 39.3 3.2 46 77-126 90-136 (369)
438 KOG0391|consensus 80.5 17 0.00037 39.0 10.5 106 75-187 635-743 (1958)
439 COG1223 Predicted ATPase (AAA+ 80.4 1.2 2.6E-05 39.3 2.2 16 75-90 152-167 (368)
440 COG1086 Predicted nucleoside-d 80.4 17 0.00037 35.8 10.1 94 59-164 235-332 (588)
441 CHL00195 ycf46 Ycf46; Provisio 80.4 1.9 4.1E-05 42.0 3.8 54 34-91 222-276 (489)
442 TIGR03158 cas3_cyano CRISPR-as 80.3 6.8 0.00015 36.5 7.4 61 106-175 271-331 (357)
443 TIGR02784 addA_alphas double-s 80.2 4.4 9.5E-05 44.0 6.9 55 74-130 10-64 (1141)
444 PRK14088 dnaA chromosomal repl 80.2 11 0.00023 36.3 8.9 49 75-127 131-179 (440)
445 PF01745 IPT: Isopentenyl tran 80.2 2.9 6.3E-05 35.9 4.3 17 77-93 4-20 (233)
446 PRK13342 recombination factor 80.2 12 0.00026 35.7 9.1 17 76-92 38-54 (413)
447 TIGR01587 cas3_core CRISPR-ass 80.1 7.8 0.00017 35.9 7.8 57 107-165 222-286 (358)
448 PF00225 Kinesin: Kinesin moto 80.1 1.5 3.3E-05 40.4 3.0 26 67-92 66-93 (335)
449 COG1136 SalX ABC-type antimicr 80.0 2.3 4.9E-05 36.9 3.8 29 71-101 28-56 (226)
450 KOG2373|consensus 80.0 0.62 1.3E-05 42.6 0.3 81 34-123 230-320 (514)
451 PRK00131 aroK shikimate kinase 79.9 1.2 2.6E-05 36.4 2.0 20 73-92 3-22 (175)
452 KOG0733|consensus 79.8 1.9 4.1E-05 42.6 3.5 60 30-92 180-241 (802)
453 cd01370 KISc_KIP3_like Kinesin 79.6 1.3 2.8E-05 41.0 2.3 26 66-91 78-105 (338)
454 PRK07764 DNA polymerase III su 79.5 22 0.00048 37.1 11.3 47 37-98 12-61 (824)
455 PRK12402 replication factor C 79.3 2.4 5.2E-05 38.8 4.0 18 76-93 38-55 (337)
456 TIGR00631 uvrb excinuclease AB 79.3 8.8 0.00019 38.9 8.2 72 106-187 441-516 (655)
457 TIGR01650 PD_CobS cobaltochela 79.2 2.3 4.9E-05 39.0 3.7 25 67-91 57-81 (327)
458 COG2256 MGS1 ATPase related to 79.2 9.3 0.0002 36.0 7.6 62 76-145 50-113 (436)
459 PRK11664 ATP-dependent RNA hel 79.1 12 0.00025 39.1 9.2 74 107-187 212-289 (812)
460 PRK04220 2-phosphoglycerate ki 79.0 2.8 6.1E-05 38.0 4.2 46 44-90 60-108 (301)
461 PRK06645 DNA polymerase III su 79.0 28 0.00061 34.2 11.3 20 76-95 45-64 (507)
462 KOG0652|consensus 79.0 2.7 5.8E-05 37.2 3.8 63 27-92 158-223 (424)
463 TIGR01243 CDC48 AAA family ATP 78.9 1.6 3.5E-05 44.9 3.0 55 35-92 448-505 (733)
464 PRK10078 ribose 1,5-bisphospho 78.9 1.5 3.2E-05 36.7 2.3 19 74-92 2-20 (186)
465 PF13177 DNA_pol3_delta2: DNA 78.8 14 0.00029 30.2 7.9 99 76-175 21-152 (162)
466 PRK07399 DNA polymerase III su 78.7 26 0.00056 32.1 10.4 40 76-116 28-78 (314)
467 cd01367 KISc_KIF2_like Kinesin 78.6 1.3 2.8E-05 40.7 2.0 27 66-92 75-103 (322)
468 PRK00091 miaA tRNA delta(2)-is 78.6 1.5 3.2E-05 40.0 2.3 17 76-92 6-22 (307)
469 PRK05342 clpX ATP-dependent pr 78.5 1.5 3.2E-05 41.8 2.4 18 75-92 109-126 (412)
470 KOG0989|consensus 78.5 3.2 7E-05 37.5 4.3 24 75-98 58-81 (346)
471 cd01376 KISc_KID_like Kinesin 78.5 1.6 3.4E-05 40.1 2.5 26 66-91 71-98 (319)
472 COG3451 VirB4 Type IV secretor 78.4 2.9 6.3E-05 43.3 4.5 39 76-118 438-476 (796)
473 COG0593 DnaA ATPase involved i 78.4 8 0.00017 36.7 7.1 52 75-129 114-172 (408)
474 COG1126 GlnQ ABC-type polar am 78.1 2.7 5.8E-05 36.2 3.5 29 71-101 25-53 (240)
475 cd01369 KISc_KHC_KIF5 Kinesin 78.1 1.6 3.4E-05 40.2 2.3 26 66-91 67-94 (325)
476 cd01368 KISc_KIF23_like Kinesi 78.0 1.4 3E-05 40.9 2.0 25 67-91 80-106 (345)
477 COG0378 HypB Ni2+-binding GTPa 78.0 8.4 0.00018 32.5 6.3 14 76-89 15-28 (202)
478 PHA00729 NTP-binding motif con 77.9 5.3 0.00011 34.6 5.4 51 76-128 19-78 (226)
479 PRK06090 DNA polymerase III su 77.9 19 0.00042 33.0 9.3 116 60-175 4-158 (319)
480 cd00227 CPT Chloramphenicol (C 77.9 1.7 3.8E-05 35.9 2.4 19 74-92 2-20 (175)
481 cd00071 GMPK Guanosine monopho 77.9 1.9 4.1E-05 34.2 2.5 13 77-89 2-14 (137)
482 TIGR00390 hslU ATP-dependent p 77.8 3.3 7.2E-05 39.4 4.4 18 75-92 48-65 (441)
483 PF03969 AFG1_ATPase: AFG1-lik 77.8 62 0.0013 30.3 13.2 50 74-131 62-111 (362)
484 cd01373 KISc_KLP2_like Kinesin 77.5 1.7 3.6E-05 40.3 2.4 25 67-91 66-92 (337)
485 PHA02653 RNA helicase NPH-II; 77.4 6.8 0.00015 39.8 6.8 73 107-187 395-470 (675)
486 cd01365 KISc_KIF1A_KIF1B Kines 77.4 1.6 3.4E-05 40.8 2.2 25 67-91 80-106 (356)
487 PRK08118 topology modulation p 77.1 1.7 3.8E-05 35.7 2.1 14 76-89 3-16 (167)
488 PF03029 ATP_bind_1: Conserved 77.0 2.7 5.8E-05 36.8 3.4 22 79-101 1-22 (238)
489 TIGR02928 orc1/cdc6 family rep 77.0 2.6 5.7E-05 39.1 3.6 25 75-100 41-65 (365)
490 cd00079 HELICc Helicase superf 76.9 14 0.00031 27.9 7.3 55 107-165 28-86 (131)
491 TIGR00176 mobB molybdopterin-g 76.8 5.1 0.00011 32.5 4.8 35 77-116 2-36 (155)
492 COG0324 MiaA tRNA delta(2)-iso 76.6 1.8 3.9E-05 39.3 2.2 15 77-91 6-20 (308)
493 PRK14087 dnaA chromosomal repl 76.6 7.8 0.00017 37.4 6.7 48 76-127 143-190 (450)
494 cd01375 KISc_KIF9_like Kinesin 76.5 1.7 3.7E-05 40.2 2.1 25 67-91 72-98 (334)
495 KOG0729|consensus 76.4 3.4 7.4E-05 36.6 3.8 82 32-123 169-251 (435)
496 COG0714 MoxR-like ATPases [Gen 76.3 3 6.5E-05 38.4 3.7 29 63-91 32-60 (329)
497 cd01393 recA_like RecA is a b 76.3 3.7 8.1E-05 35.2 4.1 44 74-117 19-63 (226)
498 smart00763 AAA_PrkA PrkA AAA d 76.3 4.1 8.9E-05 37.9 4.5 16 75-90 79-94 (361)
499 COG1220 HslU ATP-dependent pro 76.2 1.9 4.1E-05 39.6 2.2 18 75-92 51-68 (444)
500 COG0556 UvrB Helicase subunit 76.2 15 0.00033 35.9 8.2 97 107-213 446-561 (663)
No 1
>KOG0330|consensus
Probab=100.00 E-value=7.9e-55 Score=384.20 Aligned_cols=286 Identities=29% Similarity=0.418 Sum_probs=244.1
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
.+.-.+|.+||++|++++++++.||+.||++|+++||.++.|+|+++.|.||||||.+|++|+++++... ++.++++|
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~--p~~~~~lV 134 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE--PKLFFALV 134 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC--CCCceEEE
Confidence 4566899999999999999999999999999999999999999999999999999999999999999984 34589999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHH-hccccccCchhhHH----
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV-EMELKLSSIQYTFK---- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~-~~~~~~~~l~~lV~---- 187 (333)
++||||||.|+.++++.++..+|+++.++.||.+...+...+.+.|||||+||+||++++. .+.+.++.++|||+
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 67789999999997
Q ss_pred ------HHHHHh---hccccceeeeecCCChHHHHHhhh----cCC-cEEEe----CCCceEEEEEecchhhh-------
Q psy18032 188 ------FVKELG---KFTKLQSTCLLGGDSMDNQFARLH----ASP-DIVVA----TPGRFLHIVVEMELKLS------- 242 (333)
Q Consensus 188 ------~i~~l~---~~~~~~~~~l~~sAT~~~~v~~l~----~~~-~i~~~----t~~~i~~~~~~~~~k~~------- 242 (333)
|.+++. +.+|..+|+++|||||+..+.++. ..| .+.+. |.+.+.|.|.....|.+
T Consensus 215 rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~l 294 (476)
T KOG0330|consen 215 RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYL 294 (476)
T ss_pred hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHH
Confidence 444444 445688999999999999998875 223 33332 23345555544433322
Q ss_pred ------hHHHHhhcchhhHHHHHHHhc--CCCcccccc---ch---HHHhhhCCCCcccccccc--------CCcccccc
Q psy18032 243 ------SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK---QR---QSVRKWDPAKKKYVQVTD--------DTIPLVLE 300 (333)
Q Consensus 243 ------~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~---~r---~~l~~f~~g~~~vLvaTd--------~~i~~vi~ 300 (333)
...+|||++..+++.++-.|+ |+.+..+|| +. -++++|++|..+|||||| +.+++|+|
T Consensus 295 l~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN 374 (476)
T KOG0330|consen 295 LNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN 374 (476)
T ss_pred HHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe
Confidence 125889999999999998887 999999999 22 467999999999999999 55666776
Q ss_pred -------cccEEEEccCC----CchhhHHHh
Q psy18032 301 -------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 301 -------~~~~~~~grtG----~g~~~~~~l 320 (333)
..|+||+|||| +|++++++.
T Consensus 375 yDiP~~skDYIHRvGRtaRaGrsG~~ItlVt 405 (476)
T KOG0330|consen 375 YDIPTHSKDYIHRVGRTARAGRSGKAITLVT 405 (476)
T ss_pred cCCCCcHHHHHHHcccccccCCCcceEEEEe
Confidence 55999988888 898888775
No 2
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-53 Score=406.18 Aligned_cols=285 Identities=33% Similarity=0.512 Sum_probs=245.9
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
++|++++|++++++++.+.||..|||+|.++||.++.|+|++++|+||||||++|++|+++.+..........+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 78999999999999999999999999999999999999999999999999999999999999874211111129999999
Q ss_pred HHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--------
Q psy18032 117 RELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------- 187 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------- 187 (333)
||||.|+++.++.++++. ++++..++||.+...+...+..++||||+||+|+++++.++.+++++++++|+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999998 89999999999999999999989999999999999999999999999999997
Q ss_pred --HHHHHhhc---cccceeeeecCCChHHHHHhhh----cCC-cEEEe------CCCceEEEEEecch---hhhhH----
Q psy18032 188 --FVKELGKF---TKLQSTCLLGGDSMDNQFARLH----ASP-DIVVA------TPGRFLHIVVEMEL---KLSSI---- 244 (333)
Q Consensus 188 --~i~~l~~~---~~~~~~~l~~sAT~~~~v~~l~----~~~-~i~~~------t~~~i~~~~~~~~~---k~~~l---- 244 (333)
|.+++..+ +|...|+++||||+++.+..+. ++| .+.+. ++..+.|.+..... |...+
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 55555544 4568999999999998887764 444 44444 56678888877642 44433
Q ss_pred -------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-
Q psy18032 245 -------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE- 300 (333)
Q Consensus 245 -------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~- 300 (333)
++|||+++..+++++..|. |+++..+|| +.+.+++|++|+.+|||||| +++++|+|
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEc
Confidence 5899999999999999886 999999999 33567999999999999999 55666665
Q ss_pred ------cccEEEEccCC----CchhhHHHhh
Q psy18032 301 ------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 301 ------~~~~~~~grtG----~g~~~~~~lp 321 (333)
..|+||+|||| +|.++.|+.|
T Consensus 349 D~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~ 379 (513)
T COG0513 349 DLPLDPEDYVHRIGRTGRAGRKGVAISFVTE 379 (513)
T ss_pred cCCCCHHHheeccCccccCCCCCeEEEEeCc
Confidence 55999999999 7888888876
No 3
>KOG0331|consensus
Probab=100.00 E-value=2.6e-52 Score=389.37 Aligned_cols=284 Identities=32% Similarity=0.518 Sum_probs=240.2
Q ss_pred cccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhh----cccCCceEEEE
Q psy18032 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTH----AATSGVRALIL 113 (333)
Q Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~~~lil 113 (333)
.|.+++|++++..+|+..||+.|||||.++||.++.|+|++.+|.||||||++|++|++.++... ...++|++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999862 12458999999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------ 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------ 187 (333)
+||||||.|+.+.+..++..+.+++.|++||.+...|.+.+.++++|+|+||+||.++++.+.++++++.|+|+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----HHHHHhhcc----ccceeeeecCCChHHHHHhhh----cC-CcEEEeCC------CceEEEEEecc--hhhhhH--
Q psy18032 188 ----FVKELGKFT----KLQSTCLLGGDSMDNQFARLH----AS-PDIVVATP------GRFLHIVVEME--LKLSSI-- 244 (333)
Q Consensus 188 ----~i~~l~~~~----~~~~~~l~~sAT~~~~v~~l~----~~-~~i~~~t~------~~i~~~~~~~~--~k~~~l-- 244 (333)
|.+++.+++ +..+|++++|||++.+++.++ ++ ..+.++.. .++.|.+...+ .|...+
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 555555543 345699999999999998875 23 34555422 23444443222 122211
Q ss_pred ------------HHHhhcchhhHHHHHHHhc--CCCcccccc-----chH-HHhhhCCCCcccccccc--------CCcc
Q psy18032 245 ------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ-SVRKWDPAKKKYVQVTD--------DTIP 296 (333)
Q Consensus 245 ------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~-~l~~f~~g~~~vLvaTd--------~~i~ 296 (333)
++|||+|++.|++++..|+ ++++..||| +|+ .++.|++|+..|||||| ++++
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~ 411 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD 411 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence 5899999999999999997 699999999 343 56999999999999999 6777
Q ss_pred cccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 297 LVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 297 ~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
+||| ..|+||+|||| .|.|..|+-+
T Consensus 412 lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~ 447 (519)
T KOG0331|consen 412 LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTS 447 (519)
T ss_pred EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeH
Confidence 7886 55999999999 3555555443
No 4
>KOG0338|consensus
Probab=100.00 E-value=5.6e-51 Score=370.18 Aligned_cols=274 Identities=31% Similarity=0.480 Sum_probs=230.4
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc-cCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA-TSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~lil~P 115 (333)
.+|.+|+|+-.|++++..+||..|||+|..+||..+-|+|+..||-||||||++|++|+|+++...+. ....++|||+|
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 48999999999999999999999999999999999999999999999999999999999999987543 23569999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cccccCchhhHH-------
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQYTFK------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~------- 187 (333)
||||+.|++.+.++++.++++.+++++||.+.+.|...|+++|+|+|+||+||.+++.+. .+.++++..||+
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875 489999999996
Q ss_pred ---HHH---HHhhccccceeeeecCCChHHHHHhhh-----cCCcEEEeCC----CceEEEEEecc----h-hh------
Q psy18032 188 ---FVK---ELGKFTKLQSTCLLGGDSMDNQFARLH-----ASPDIVVATP----GRFLHIVVEME----L-KL------ 241 (333)
Q Consensus 188 ---~i~---~l~~~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~~t~----~~i~~~~~~~~----~-k~------ 241 (333)
|.+ +|-++++.++|+++|||||++++..|. ++..|.+..+ ..+.|.++..- . +.
T Consensus 341 eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l 420 (691)
T KOG0338|consen 341 EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL 420 (691)
T ss_pred HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH
Confidence 444 455667899999999999999998874 3445665432 33444443211 0 00
Q ss_pred -----hhHHHHhhcchhhHHHHHH--HhcCCCcccccc---ch---HHHhhhCCCCcccccccc----------------
Q psy18032 242 -----SSIQLSLTDFKQDTSRIAL--DLVGDSTEMIHK---QR---QSVRKWDPAKKKYVQVTD---------------- 292 (333)
Q Consensus 242 -----~~l~lif~~~~~~~~~l~~--~L~g~~~~~lh~---~r---~~l~~f~~g~~~vLvaTd---------------- 292 (333)
+.-.++|+.|++.|.++.= .|-|.++.-+|| |. +.+++|++++++||||||
T Consensus 421 ~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN 500 (691)
T KOG0338|consen 421 ITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN 500 (691)
T ss_pred HHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe
Confidence 1114789999999999874 445999999999 33 456999999999999999
Q ss_pred CCcccccccccEEEEccCC
Q psy18032 293 DTIPLVLEGRDVVAMARTG 311 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG 311 (333)
+.||..++. |+||+|||.
T Consensus 501 y~mP~t~e~-Y~HRVGRTA 518 (691)
T KOG0338|consen 501 YAMPKTIEH-YLHRVGRTA 518 (691)
T ss_pred ccCchhHHH-HHHHhhhhh
Confidence 455555556 999999998
No 5
>KOG0328|consensus
Probab=100.00 E-value=1.5e-50 Score=343.71 Aligned_cols=288 Identities=26% Similarity=0.478 Sum_probs=246.5
Q ss_pred cccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCce
Q psy18032 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVR 109 (333)
Q Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 109 (333)
+.+.+...+|+++||.+++++++..+||++|+.+|++||+.+++|+|++++|++|+|||.+|.+.+|+.+.-. .+..+
T Consensus 20 s~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~--~r~tQ 97 (400)
T KOG0328|consen 20 SEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS--VRETQ 97 (400)
T ss_pred ccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc--cceee
Confidence 3556788999999999999999999999999999999999999999999999999999999999999987762 34579
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--
Q psy18032 110 ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-- 187 (333)
Q Consensus 110 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-- 187 (333)
++|++||||||.|+.+.+..++.++|+++..+.||.+..+..+.+.-|.|++.+||+|++++++.+.+.-+.++++|+
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhh----hcCC-cEEEe----CCCceEEEEEecc---hhhhhH
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARL----HASP-DIVVA----TPGRFLHIVVEME---LKLSSI 244 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l----~~~~-~i~~~----t~~~i~~~~~~~~---~k~~~l 244 (333)
.+-++.+++|...|++++|||+++++.++ +.+| .+.+- |-+.+.++++..+ .|...+
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 44556678899999999999999887654 4455 44443 3335778887653 355554
Q ss_pred -----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCccc
Q psy18032 245 -----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPL 297 (333)
Q Consensus 245 -----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~ 297 (333)
.++||||++.++++.+.|+ ++.+..+|| +.+.|.+|++|+.+||++|| +.+.+
T Consensus 258 cdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 258 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 4899999999999999997 889999999 23567999999999999999 33333
Q ss_pred ccc-------cccEEEEccCC----CchhhHHH
Q psy18032 298 VLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 298 vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
||| ..|+|||||+| .|-++-|+
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFV 370 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 370 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEe
Confidence 443 44999999999 45555554
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-47 Score=365.02 Aligned_cols=290 Identities=28% Similarity=0.415 Sum_probs=234.9
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc-----cC
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA-----TS 106 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-----~~ 106 (333)
......+|++++|+++++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|+++.+...+. ..
T Consensus 3 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~ 82 (423)
T PRK04837 3 THLTEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVN 82 (423)
T ss_pred ccCCCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccC
Confidence 3455689999999999999999999999999999999999999999999999999999999999999875332 23
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
++++|||+||++||.|+++.+..+++..++++..++||.+...+...+.++++|+|+||+++++++.++.+.+++++++|
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lV 162 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVV 162 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEE
Confidence 67999999999999999999999999999999999999998888888888899999999999999999999999999999
Q ss_pred H----------HHHHHhhc---cc--cceeeeecCCChHHHHHhhh----cCCcEEEeCC-----CceEEEEEec--chh
Q psy18032 187 K----------FVKELGKF---TK--LQSTCLLGGDSMDNQFARLH----ASPDIVVATP-----GRFLHIVVEM--ELK 240 (333)
Q Consensus 187 ~----------~i~~l~~~---~~--~~~~~l~~sAT~~~~v~~l~----~~~~i~~~t~-----~~i~~~~~~~--~~k 240 (333)
+ |..++..+ ++ ...+.+++|||++..+..+. ..|..+...+ .++.+.+... ..|
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEK 242 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHH
Confidence 5 22333222 23 35678999999987766543 4444333222 2344433322 223
Q ss_pred hhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------C
Q psy18032 241 LSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------D 293 (333)
Q Consensus 241 ~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~ 293 (333)
...+ .+|||++++.|+.++..|. |+++..+|| +| +.+++|++|+++|||||| +
T Consensus 243 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 243 MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 2222 5899999999999999996 899999998 23 456999999999999999 5
Q ss_pred Ccccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 294 TIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 294 ~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
+++.||+ ..|+||+|||| .|.++.|+.+
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~ 361 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 361 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCH
Confidence 5666665 55999999999 4666666554
No 7
>KOG0333|consensus
Probab=100.00 E-value=5.2e-48 Score=352.03 Aligned_cols=294 Identities=30% Similarity=0.438 Sum_probs=249.5
Q ss_pred CCcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc---
Q psy18032 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--- 104 (333)
Q Consensus 28 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--- 104 (333)
.+..-+.+..+|++.|++.++++.+.+.||..|+|+|..+||..+..+|+|..|.||||||++|++|++..+.+.++
T Consensus 236 kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~ 315 (673)
T KOG0333|consen 236 KGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMAR 315 (673)
T ss_pred cCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcch
Confidence 34455788899999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred ----cCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcccccc
Q psy18032 105 ----TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 180 (333)
Q Consensus 105 ----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~ 180 (333)
..||.++|++|||+|++|+.+.-..|++..+++++.++||.+.+++--.+..+|+|+|+||++|++.+.+..+.++
T Consensus 316 ~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~ 395 (673)
T KOG0333|consen 316 LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLN 395 (673)
T ss_pred hhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhc
Confidence 3489999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CchhhHH----------HHHHHhhc---cc-----------------------cc--eeeeecCCChHHHHHhhh----c
Q psy18032 181 SIQYTFK----------FVKELGKF---TK-----------------------LQ--STCLLGGDSMDNQFARLH----A 218 (333)
Q Consensus 181 ~l~~lV~----------~i~~l~~~---~~-----------------------~~--~~~l~~sAT~~~~v~~l~----~ 218 (333)
.+.++|+ |-+++.++ +| .+ +|+++|+|||++.++.++ .
T Consensus 396 qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr 475 (673)
T KOG0333|consen 396 QCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLR 475 (673)
T ss_pred cCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhh
Confidence 9999996 33333222 11 11 899999999999988875 4
Q ss_pred CC-cEEEeCC----CceEEEEEec--chhhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc-----c
Q psy18032 219 SP-DIVVATP----GRFLHIVVEM--ELKLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----Q 273 (333)
Q Consensus 219 ~~-~i~~~t~----~~i~~~~~~~--~~k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~ 273 (333)
.| .+.+++. +++.|.++.. +.|.+.+ .+||+|+++.|+.||+.|. |+.+..||| +
T Consensus 476 ~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 476 RPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQ 555 (673)
T ss_pred CCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHH
Confidence 45 4445543 4677776543 3334333 5899999999999999997 999999998 3
Q ss_pred h-HHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 274 R-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 274 r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
| .+++.|++|..+|||||| +++.+||| ..|+||||||| +|.+.+|+.|
T Consensus 556 Re~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~ 623 (673)
T KOG0333|consen 556 RENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTP 623 (673)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEecc
Confidence 4 357999999999999999 66777776 55999999999 7888888765
No 8
>KOG0340|consensus
Probab=100.00 E-value=1.9e-48 Score=340.20 Aligned_cols=286 Identities=28% Similarity=0.430 Sum_probs=239.2
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
..+..|++|||.+|+.+.|+++|++.|||+|+.|||.+++|+|++.+|.||||||++|.+|+++++... +.|..++|+
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed--P~giFalvl 81 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED--PYGIFALVL 81 (442)
T ss_pred cccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC--CCcceEEEe
Confidence 456789999999999999999999999999999999999999999999999999999999999999884 458899999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc----cccccCchhhHH--
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM----ELKLSSIQYTFK-- 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~----~~~~~~l~~lV~-- 187 (333)
+||||||.|+.++|..+++..++++.+++||.+.-.+...|.+++|++|+||||+.+++..+ ...+.+++|+|+
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999876 236889999996
Q ss_pred --------HHHHHh---hccccceeeeecCCChHHHHHhhhcCC-----cEEE------eCCCceEEEEEecch------
Q psy18032 188 --------FVKELG---KFTKLQSTCLLGGDSMDNQFARLHASP-----DIVV------ATPGRFLHIVVEMEL------ 239 (333)
Q Consensus 188 --------~i~~l~---~~~~~~~~~l~~sAT~~~~v~~l~~~~-----~i~~------~t~~~i~~~~~~~~~------ 239 (333)
|-+++. .-+|..+|+++||||+.+.+.++...+ .... .++..+.+-|.....
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaY 241 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAY 241 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHH
Confidence 333333 345677999999999999998886322 1111 244555555443321
Q ss_pred ----------hhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc---chH---HHhhhCCCCcccccccc--------C
Q psy18032 240 ----------KLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK---QRQ---SVRKWDPAKKKYVQVTD--------D 293 (333)
Q Consensus 240 ----------k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~---~r~---~l~~f~~g~~~vLvaTd--------~ 293 (333)
|...-.+||+++..+|+.++..|. ++++..+|+ |++ ++.+|+++..++|+||| +
T Consensus 242 Lv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP 321 (442)
T KOG0340|consen 242 LVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIP 321 (442)
T ss_pred HHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCC
Confidence 122336899999999999999887 778999999 443 56899999999999999 5
Q ss_pred Ccccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 294 TIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 294 ~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
.+..|+| ..|+||+|||. .|-+++|+.+
T Consensus 322 ~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~ 360 (442)
T KOG0340|consen 322 TVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQ 360 (442)
T ss_pred ceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEech
Confidence 5666776 55999999887 6778777754
No 9
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5e-47 Score=368.98 Aligned_cols=283 Identities=26% Similarity=0.392 Sum_probs=232.6
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc---cc
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA---AT 105 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~ 105 (333)
....+++..+|++++++++++++|+++||++|||+|.++||.+++|+|++++||||||||++|++|++.++...+ ..
T Consensus 122 g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~ 201 (545)
T PTZ00110 122 GENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYG 201 (545)
T ss_pred CCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCC
Confidence 445678889999999999999999999999999999999999999999999999999999999999999886532 23
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhh
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~l 185 (333)
.++++|||+||+|||.|+.+.++.++...++++.+++||.+...+...+.++++|+|+||++|++++.++...+++++++
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 47899999999999999999999999989999999999999888888898999999999999999999998999999999
Q ss_pred HH----------HHHHHhhc---cccceeeeecCCChHHHHHhhh----c-CC-cEEEeC-----CCceEEEEEec--ch
Q psy18032 186 FK----------FVKELGKF---TKLQSTCLLGGDSMDNQFARLH----A-SP-DIVVAT-----PGRFLHIVVEM--EL 239 (333)
Q Consensus 186 V~----------~i~~l~~~---~~~~~~~l~~sAT~~~~v~~l~----~-~~-~i~~~t-----~~~i~~~~~~~--~~ 239 (333)
|+ |...+.++ ++..+|++++|||++..+..+. . .+ .+.++. ..++.+.+... ..
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~ 361 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHE 361 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechh
Confidence 95 22222222 3457899999999998876653 2 22 233322 23454444322 12
Q ss_pred hhhh-------------HHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc------
Q psy18032 240 KLSS-------------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD------ 292 (333)
Q Consensus 240 k~~~-------------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd------ 292 (333)
|... -.+|||++++.|+.++..|. |+++..+|| +| +.+++|++|+++||||||
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 2221 25899999999999999996 899999998 23 456999999999999999
Q ss_pred --CCcccccc-------cccEEEEccCC
Q psy18032 293 --DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 293 --~~i~~vi~-------~~~~~~~grtG 311 (333)
+++..||+ ..|+||+||||
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTG 469 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 56666665 44999999999
No 10
>KOG0346|consensus
Probab=100.00 E-value=6.1e-48 Score=345.05 Aligned_cols=285 Identities=31% Similarity=0.437 Sum_probs=241.6
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc----ccCCceEEE
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA----ATSGVRALI 112 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~----~~~~~~~li 112 (333)
.+|++|||++.|++++.+.||+.||-+|+.+||.++.|+|+++.|.||||||++|++|+++.+.... ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 7999999999999999999999999999999999999999999999999999999999999987643 345899999
Q ss_pred EcccHHHHHHHHHHHHHHhccCC--ceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc-ccccCchhhHH--
Q psy18032 113 LSPTRELALQTFKFVKELGKFTK--LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQYTFK-- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~-~~~~~l~~lV~-- 187 (333)
++||+|||+|++.++.++..+.. ++++-+....+.......+...|+|+|+||++++.++..+. ..++.+.+||+
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999876654 66777776777666667778889999999999999999887 68899999996
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe------CCCceEEEEEecch--hhhhH
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA------TPGRFLHIVVEMEL--KLSSI 244 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~------t~~~i~~~~~~~~~--k~~~l 244 (333)
.+..+...+|...|++++|||+++.+..+. ++|.++.- .|+.+.|+.+.++. |+-.+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 333455668899999999999999998774 67777664 34567788776642 22211
Q ss_pred ------------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc------------
Q psy18032 245 ------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD------------ 292 (333)
Q Consensus 245 ------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd------------ 292 (333)
.++|+|+...|.++...|. |+++..++| +...+++|..|-++++||||
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 4889999999999999997 999999998 44678999999999999998
Q ss_pred ---------------------------------------CCcccccccccEEEEccCC----CchhhHHHhhh
Q psy18032 293 ---------------------------------------DTIPLVLEGRDVVAMARTG----SGKTACFLFYF 322 (333)
Q Consensus 293 ---------------------------------------~~i~~vi~~~~~~~~grtG----~g~~~~~~lp~ 322 (333)
.|+|....+ |+||+|||+ +|-+++|+.|-
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~s-YIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTS-YIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHH-HHHhccccccCCCCCceEEEecch
Confidence 345555556 999999999 78899999985
No 11
>KOG0341|consensus
Probab=100.00 E-value=5.9e-49 Score=346.81 Aligned_cols=290 Identities=31% Similarity=0.440 Sum_probs=242.5
Q ss_pred CCcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhh-----
Q psy18032 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTH----- 102 (333)
Q Consensus 28 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~----- 102 (333)
.++.-+.+..+|.++.++..+++.|++.|+.+|||+|.+.+|.+++|+|.+..|-||||||++|++|++......
T Consensus 161 eGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lP 240 (610)
T KOG0341|consen 161 EGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLP 240 (610)
T ss_pred eCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCc
Confidence 456678889999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred -cccCCceEEEEcccHHHHHHHHHHHHHHhcc------CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc
Q psy18032 103 -AATSGVRALILSPTRELALQTFKFVKELGKF------TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM 175 (333)
Q Consensus 103 -~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~ 175 (333)
....||..|||||+||||.|.++.+..+... +.+++..+.||.+..++...++.+.||+|+||+||.+++.++
T Consensus 241 f~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK 320 (610)
T KOG0341|consen 241 FARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK 320 (610)
T ss_pred cccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh
Confidence 2356999999999999999999999987543 457899999999999999999999999999999999999999
Q ss_pred cccccCchhhHH----------HHHHHhh---ccccceeeeecCCChHHHHHhhh-----cCCcEEEeCCCce----EEE
Q psy18032 176 ELKLSSIQYTFK----------FVKELGK---FTKLQSTCLLGGDSMDNQFARLH-----ASPDIVVATPGRF----LHI 233 (333)
Q Consensus 176 ~~~~~~l~~lV~----------~i~~l~~---~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~~t~~~i----~~~ 233 (333)
.+.++-++||++ |.++++. ++..++|+++|||||+..+.-++ ++..+.++..|.- .|.
T Consensus 321 ~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQe 400 (610)
T KOG0341|consen 321 IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQE 400 (610)
T ss_pred hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHH
Confidence 999999999997 5555554 45679999999999999887765 3445556655532 111
Q ss_pred E------------EecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc-
Q psy18032 234 V------------VEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD- 292 (333)
Q Consensus 234 ~------------~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd- 292 (333)
+ .++-+|....++|||..+.+++.+.++|- |..+..+|| +| .+++.|+.|+-+||||||
T Consensus 401 vEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDV 480 (610)
T KOG0341|consen 401 VEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDV 480 (610)
T ss_pred HHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecc
Confidence 1 11223444457999999999999998874 999999998 23 467999999999999999
Q ss_pred -------CCcccccc-------cccEEEEccCC-CchhhH
Q psy18032 293 -------DTIPLVLE-------GRDVVAMARTG-SGKTAC 317 (333)
Q Consensus 293 -------~~i~~vi~-------~~~~~~~grtG-~g~~~~ 317 (333)
++|.+||| ..|+||||||| +|++..
T Consensus 481 ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi 520 (610)
T KOG0341|consen 481 ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI 520 (610)
T ss_pred hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce
Confidence 45555555 33999999999 787764
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.4e-46 Score=357.45 Aligned_cols=283 Identities=32% Similarity=0.518 Sum_probs=230.6
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc----cCCceEEE
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA----TSGVRALI 112 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~li 112 (333)
|+|++++|+++++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|+++.+..... ...+++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999875321 22458999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----- 187 (333)
|+||++||.|+++.++.+....++++..++||.+.+.+...+.++++|+|+||++|++++....+.+++++++|+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 999999999999999999999999999999999998888888888999999999999999998899999999995
Q ss_pred -----HHHHHh---hccccceeeeecCCChHHHHHhhh----cCCcEE-Ee----CCCceEEEEEecch--hhh------
Q psy18032 188 -----FVKELG---KFTKLQSTCLLGGDSMDNQFARLH----ASPDIV-VA----TPGRFLHIVVEMEL--KLS------ 242 (333)
Q Consensus 188 -----~i~~l~---~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~----t~~~i~~~~~~~~~--k~~------ 242 (333)
|..++. ..++...|.+++|||+++.+..+. ..+..+ +. ....+.+++...+. +..
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 222222 234567899999999988765543 444333 22 22345555543321 111
Q ss_pred -----hHHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-
Q psy18032 243 -----SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE- 300 (333)
Q Consensus 243 -----~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~- 300 (333)
.-.+|||+++..++.+++.|. ++++..+|| +.+.+++|++|+++|||||| ++++.||+
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 114899999999999999996 899999998 33566999999999999999 55666775
Q ss_pred ------cccEEEEccCC----CchhhHHH
Q psy18032 301 ------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 301 ------~~~~~~~grtG----~g~~~~~~ 319 (333)
..|+||+|||| .|+++.|+
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 45999999999 45665555
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.2e-46 Score=357.19 Aligned_cols=274 Identities=29% Similarity=0.404 Sum_probs=228.2
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.++|++++|++.++++|.++||+.|||+|.++||.+++|+|++++||||||||++|++|+++++... ..++++||++|
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--~~~~~~lil~P 80 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--RFRVQALVLCP 80 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--cCCceEEEEeC
Confidence 4689999999999999999999999999999999999999999999999999999999999998652 23568999999
Q ss_pred cHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------
Q psy18032 116 TRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------- 187 (333)
|++||.|+.+.++.+++.. ++++..++||.+...+...+..+++|+|+||+++.+++.++.+.+++++++|+
T Consensus 81 treLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l 160 (460)
T PRK11776 81 TRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRML 160 (460)
T ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHh
Confidence 9999999999999987754 78999999999999988888889999999999999999999999999999995
Q ss_pred ---HHHH---HhhccccceeeeecCCChHHHHHhhh----cCCcEE-Ee---CCCceEEEEEecc--hhhhhH-------
Q psy18032 188 ---FVKE---LGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIV-VA---TPGRFLHIVVEME--LKLSSI------- 244 (333)
Q Consensus 188 ---~i~~---l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~---t~~~i~~~~~~~~--~k~~~l------- 244 (333)
|..+ +...++...|++++|||+++.+..+. ..+..+ +. ....+.+.+.... .|...+
T Consensus 161 ~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 240 (460)
T PRK11776 161 DMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHH 240 (460)
T ss_pred CcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhc
Confidence 2223 33445667899999999998876654 334333 32 2234666665432 222222
Q ss_pred ----HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc----
Q psy18032 245 ----QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE---- 300 (333)
Q Consensus 245 ----~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~---- 300 (333)
.+|||++++.++.+++.|. |+.+..+|| +++.+++|++|++++||||| +++..||+
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p 320 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELA 320 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCC
Confidence 5899999999999999997 899999998 33566999999999999999 45566665
Q ss_pred ---cccEEEEccCC
Q psy18032 301 ---GRDVVAMARTG 311 (333)
Q Consensus 301 ---~~~~~~~grtG 311 (333)
..|+||+||||
T Consensus 321 ~~~~~yiqR~GRtG 334 (460)
T PRK11776 321 RDPEVHVHRIGRTG 334 (460)
T ss_pred CCHhHhhhhccccc
Confidence 45999999999
No 14
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.2e-46 Score=361.25 Aligned_cols=291 Identities=25% Similarity=0.401 Sum_probs=233.1
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhh-----c
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTH-----A 103 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 103 (333)
++.-+.+..+|++++|++.+++.|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++.++... .
T Consensus 113 g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~ 192 (518)
T PLN00206 113 GEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPS 192 (518)
T ss_pred CCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccc
Confidence 44557888999999999999999999999999999999999999999999999999999999999999987542 1
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCch
Q psy18032 104 ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183 (333)
Q Consensus 104 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~ 183 (333)
...++++|||+||+|||.|+++.++.+++..++++..++||....++...+.++++|+|+||++|.+++.++.+.+++++
T Consensus 193 ~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~ 272 (518)
T PLN00206 193 EQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVS 272 (518)
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchhee
Confidence 23578999999999999999999999998889999999999999888888888999999999999999999999999999
Q ss_pred hhHH----------HHHHHhhccc--cceeeeecCCChHHHHHhhh----cCCc-EEEeCCC----ceEEEEEecc--hh
Q psy18032 184 YTFK----------FVKELGKFTK--LQSTCLLGGDSMDNQFARLH----ASPD-IVVATPG----RFLHIVVEME--LK 240 (333)
Q Consensus 184 ~lV~----------~i~~l~~~~~--~~~~~l~~sAT~~~~v~~l~----~~~~-i~~~t~~----~i~~~~~~~~--~k 240 (333)
++|+ |.+++..++. ...|++++|||+++.+..+. ..+. +.++.+. .+.+.+.... .+
T Consensus 273 ~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k 352 (518)
T PLN00206 273 VLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQK 352 (518)
T ss_pred EEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhH
Confidence 9995 2222222221 35799999999998877654 3332 3333322 2344433221 11
Q ss_pred hh-------------hHHHHhhcchhhHHHHHHHhc---CCCcccccc------chHHHhhhCCCCcccccccc------
Q psy18032 241 LS-------------SIQLSLTDFKQDTSRIALDLV---GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD------ 292 (333)
Q Consensus 241 ~~-------------~l~lif~~~~~~~~~l~~~L~---g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd------ 292 (333)
.. ...+|||+++..++.+++.|. |+++..+|| +++.+++|++|+++||||||
T Consensus 353 ~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGi 432 (518)
T PLN00206 353 KQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGV 432 (518)
T ss_pred HHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccC
Confidence 11 125899999999999998884 889999998 33567999999999999998
Q ss_pred --CCcccccc-------cccEEEEccCC----CchhhHHH
Q psy18032 293 --DTIPLVLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 293 --~~i~~vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
+++..||+ ..|+||+|||| .|.+..|+
T Consensus 433 Dip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~ 472 (518)
T PLN00206 433 DLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFV 472 (518)
T ss_pred CcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEE
Confidence 45556664 45999999999 34444443
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-45 Score=360.21 Aligned_cols=285 Identities=28% Similarity=0.406 Sum_probs=229.2
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-----ccCCceE
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-----ATSGVRA 110 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~~~ 110 (333)
.++|++|+|+++++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|+++++.... ...++++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 35799999999999999999999999999999999999999999999999999999999999986532 1235799
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cccccCchhhHH--
Q psy18032 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQYTFK-- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~-- 187 (333)
|||+||+||+.|+++.+..++...++++..++|+.+...+...+.++++|||+||++|++++.+. .+.++.++++|+
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999999999999999999998888888888999999999999998775 467888888885
Q ss_pred --------HHHHHhhc---ccc--ceeeeecCCChHHHHHhhh----cCCc-EEEe----CCCceEEEEEecc--hhhhh
Q psy18032 188 --------FVKELGKF---TKL--QSTCLLGGDSMDNQFARLH----ASPD-IVVA----TPGRFLHIVVEME--LKLSS 243 (333)
Q Consensus 188 --------~i~~l~~~---~~~--~~~~l~~sAT~~~~v~~l~----~~~~-i~~~----t~~~i~~~~~~~~--~k~~~ 243 (333)
|..++..+ ++. ..|+++||||++..+..+. ..+. +.+. +..++.+.+.... .|...
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHH
Confidence 33333322 332 6799999999987765543 3343 3332 2334555554332 22211
Q ss_pred -----------HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcc
Q psy18032 244 -----------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIP 296 (333)
Q Consensus 244 -----------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~ 296 (333)
..+|||++++.|+.+++.|. ++.+..+|| +.+.+++|++|+++|||||| +++.
T Consensus 248 L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 25899999999999999997 899999998 23556999999999999999 4455
Q ss_pred cccc-------cccEEEEccCC----CchhhHHHh
Q psy18032 297 LVLE-------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 297 ~vi~-------~~~~~~~grtG----~g~~~~~~l 320 (333)
.||+ ..|+||+||+| .|.++.|+.
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~ 362 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFAC 362 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEec
Confidence 6665 44999999999 466666653
No 16
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.1e-45 Score=363.03 Aligned_cols=285 Identities=29% Similarity=0.448 Sum_probs=233.2
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
..++|++++|++.++++|.++||.+|||+|.++||.+++|+|++++||||||||++|++|+++.+... ..++++||++
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--~~~~~~LIL~ 81 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--LKAPQILVLA 81 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--cCCCeEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999998652 3467999999
Q ss_pred ccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------
Q psy18032 115 PTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------ 187 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------ 187 (333)
||++||.|+++.+..+.+.. ++.+..++||.+...+.+.+..+++|+|+||+++++++..+.+.+++++++|+
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~m 161 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM 161 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHH
Confidence 99999999999999987664 79999999999999988888889999999999999999999999999999996
Q ss_pred ----HHHHHh---hccccceeeeecCCChHHHHHhhh----cCCcEE-Ee----CCCceEEEEEec--chhhhh------
Q psy18032 188 ----FVKELG---KFTKLQSTCLLGGDSMDNQFARLH----ASPDIV-VA----TPGRFLHIVVEM--ELKLSS------ 243 (333)
Q Consensus 188 ----~i~~l~---~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~----t~~~i~~~~~~~--~~k~~~------ 243 (333)
|.+++. ..++...|+++||||+++.+..+. ..+..+ +. +...+.+.+... ..|...
T Consensus 162 l~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~ 241 (629)
T PRK11634 162 LRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 (629)
T ss_pred hhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHH
Confidence 333333 334667899999999998776543 344333 22 223455555432 123222
Q ss_pred -----HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc--
Q psy18032 244 -----IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-- 300 (333)
Q Consensus 244 -----l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-- 300 (333)
..+|||+++..+++++..|. |+.+..+|| +.+.+++|++|+++|||||| +++.+||+
T Consensus 242 ~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d 321 (629)
T PRK11634 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYD 321 (629)
T ss_pred hcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeC
Confidence 25899999999999999996 899999998 23567999999999999999 45566664
Q ss_pred -----cccEEEEccCC----CchhhHHHhh
Q psy18032 301 -----GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 301 -----~~~~~~~grtG----~g~~~~~~lp 321 (333)
..|+||+|||| .|+++.|+.+
T Consensus 322 ~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~ 351 (629)
T PRK11634 322 IPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 (629)
T ss_pred CCCCHHHHHHHhccccCCCCcceEEEEech
Confidence 45999999999 4666666543
No 17
>KOG0342|consensus
Probab=100.00 E-value=3e-46 Score=338.71 Aligned_cols=289 Identities=28% Similarity=0.358 Sum_probs=239.0
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc--ccCCceE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA--ATSGVRA 110 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~ 110 (333)
.-....|+++.|++..+++++++||.++|++|+.+|+.++.|+|+++.|.||||||+||++|+++.+...+ ...+..+
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~v 157 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGV 157 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeE
Confidence 44467899999999999999999999999999999999999999999999999999999999999988653 3457789
Q ss_pred EEEcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc-ccccCchhhHH-
Q psy18032 111 LILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQYTFK- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~-~~~~~l~~lV~- 187 (333)
||++||||||.|++.+++++.++. ++.+..+.||.+.....+.+.++|+|+|+||+||++++++.. +-.+.++++|+
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlD 237 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLD 237 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEee
Confidence 999999999999999999999887 899999999999988888888899999999999999998754 55677788886
Q ss_pred ---------HHHHH---hhccccceeeeecCCChHHHHHhhh-----cCCcEEE-------eCCCceEEEEEecc--hhh
Q psy18032 188 ---------FVKEL---GKFTKLQSTCLLGGDSMDNQFARLH-----ASPDIVV-------ATPGRFLHIVVEME--LKL 241 (333)
Q Consensus 188 ---------~i~~l---~~~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~-------~t~~~i~~~~~~~~--~k~ 241 (333)
|.+++ .+++|.++|+++||||++..++.++ .++..+- .|..++.|.++-.. ..+
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 55554 4557899999999999999998875 2232222 14456777554322 221
Q ss_pred hh------------HHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------C
Q psy18032 242 SS------------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------D 293 (333)
Q Consensus 242 ~~------------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~ 293 (333)
.. -.+|||.|..-+..+++.|. .+++..+|| +| ....+|++-+..||+||| +
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 11 14889999999999999987 889999999 34 345999999999999999 6
Q ss_pred Ccccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 294 TIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 294 ~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
++++|++ ..|+||+|||| .|+++.++.|
T Consensus 398 ~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p 436 (543)
T KOG0342|consen 398 DVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAP 436 (543)
T ss_pred CceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeCh
Confidence 7777776 66999999999 4666655543
No 18
>KOG0335|consensus
Probab=100.00 E-value=2.9e-46 Score=343.43 Aligned_cols=293 Identities=27% Similarity=0.400 Sum_probs=243.9
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc------c-
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA------T- 105 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~------~- 105 (333)
+....+|.+-.+.+.+...++..||..|||+|+.+||.+..|+|+++||+||||||.+|++|++..+..... .
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGG 149 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCC
Confidence 455569999999999999999999999999999999999999999999999999999999999999887421 1
Q ss_pred -CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchh
Q psy18032 106 -SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184 (333)
Q Consensus 106 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~ 184 (333)
..|+++|++|||||+.|+++..+++.-..+++++.++||.+...+.+.+.++|+|+|+||+||.++++.+.+.++.++|
T Consensus 150 ~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~ 229 (482)
T KOG0335|consen 150 GVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKF 229 (482)
T ss_pred CCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcE
Confidence 2489999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred hHH-----------HHHHHhhccc-------cceeeeecCCChHHHHHhhhc-----C-CcEEE----eCCCceEEEEEe
Q psy18032 185 TFK-----------FVKELGKFTK-------LQSTCLLGGDSMDNQFARLHA-----S-PDIVV----ATPGRFLHIVVE 236 (333)
Q Consensus 185 lV~-----------~i~~l~~~~~-------~~~~~l~~sAT~~~~v~~l~~-----~-~~i~~----~t~~~i~~~~~~ 236 (333)
+|+ |.++|.++.. ..+|+++||||++..+..+.. . ..+-+ .+++++.|-+..
T Consensus 230 ~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~ 309 (482)
T KOG0335|consen 230 LVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILF 309 (482)
T ss_pred EEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeee
Confidence 997 3444444421 378999999999998877642 1 11111 355667666654
Q ss_pred cc--hhhh---------------h-----HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcc
Q psy18032 237 ME--LKLS---------------S-----IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKK 286 (333)
Q Consensus 237 ~~--~k~~---------------~-----l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~ 286 (333)
.. .|-. . ..++||.+++.|+.++..|. ++++..+|| +.+.++.|++|++.
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP 389 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc
Confidence 32 1111 1 35899999999999999997 999999999 23578999999999
Q ss_pred cccccc--------CCcccccc-------cccEEEEccCCCchhhHHHhhhhhh
Q psy18032 287 YVQVTD--------DTIPLVLE-------GRDVVAMARTGSGKTACFLFYFFFR 325 (333)
Q Consensus 287 vLvaTd--------~~i~~vi~-------~~~~~~~grtG~g~~~~~~lp~~~~ 325 (333)
+||||+ +.+.+||+ ..|+|||||||+++..+++.+++..
T Consensus 390 vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEecc
Confidence 999998 44455565 5599999999977777777777763
No 19
>KOG0326|consensus
Probab=100.00 E-value=3.5e-47 Score=328.11 Aligned_cols=281 Identities=29% Similarity=0.470 Sum_probs=239.6
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCc
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGV 108 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 108 (333)
.+...-....||++.|..+++..+.+.||++|+|+|.++||..+.|+|+++-|..|+|||.+|++|+++.+... ....
T Consensus 77 ~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~--~~~I 154 (459)
T KOG0326|consen 77 EDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK--KNVI 154 (459)
T ss_pred cccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc--ccce
Confidence 33344555789999999999999999999999999999999999999999999999999999999999999884 3478
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-
Q psy18032 109 RALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK- 187 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~- 187 (333)
+++|++||||||.|..+.+.++++.+++++...+||++..+..-.+.+..|++|+||+|++++..++.-.+++..++|+
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~D 234 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMD 234 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEec
Confidence 9999999999999999999999999999999999999999988888889999999999999999999999999999996
Q ss_pred ------------HHHHHhhccccceeeeecCCChHHHHHhhh----cCC-cEEE---eCCCceEEEEEecc--hhhhhH-
Q psy18032 188 ------------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASP-DIVV---ATPGRFLHIVVEME--LKLSSI- 244 (333)
Q Consensus 188 ------------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~-~i~~---~t~~~i~~~~~~~~--~k~~~l- 244 (333)
-++++..++|..+|.+++|||++-.+..+. +.| .|.. -|+..+.|+|-..+ .|..-+
T Consensus 235 EADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLn 314 (459)
T KOG0326|consen 235 EADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLN 314 (459)
T ss_pred hhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHH
Confidence 455566778999999999999987665543 444 3333 25566666664432 333322
Q ss_pred ----------HHHhhcchhhHHHHHHHhc--CCCcccccc-----chH-HHhhhCCCCcccccccc--------CCcccc
Q psy18032 245 ----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ-SVRKWDPAKKKYVQVTD--------DTIPLV 298 (333)
Q Consensus 245 ----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~-~l~~f~~g~~~vLvaTd--------~~i~~v 298 (333)
.+||||+..++|-+|..+. |+++-++|+ .|. ...+|++|+++.||||| ..+..|
T Consensus 315 tLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 315 TLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 4899999999999999886 999999998 343 45999999999999999 445556
Q ss_pred cc-------cccEEEEccCC
Q psy18032 299 LE-------GRDVVAMARTG 311 (333)
Q Consensus 299 i~-------~~~~~~~grtG 311 (333)
|| ..|+|||||+|
T Consensus 395 INFDfpk~aEtYLHRIGRsG 414 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSG 414 (459)
T ss_pred EecCCCCCHHHHHHHccCCc
Confidence 65 55999999999
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.9e-44 Score=344.19 Aligned_cols=275 Identities=28% Similarity=0.439 Sum_probs=224.3
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc--cCCceEEEEc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--TSGVRALILS 114 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~lil~ 114 (333)
++|++++|++.++++|.++||..|+++|.++||.++.|+|++++||||+|||++|++|+++.+...+. ..++++||++
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999875322 2357999999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------- 187 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------- 187 (333)
||++|+.|+++.++.++...++++..++||.....+...+.++++|+|+||++|++++..+.+.+++++++|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 9999999999999999999999999999999998888888888999999999999999999899999999995
Q ss_pred ---HHHH---HhhccccceeeeecCCChHH-HHHhh----hcCCcEEEeCC-----CceEEEEEecc---hhhhhH----
Q psy18032 188 ---FVKE---LGKFTKLQSTCLLGGDSMDN-QFARL----HASPDIVVATP-----GRFLHIVVEME---LKLSSI---- 244 (333)
Q Consensus 188 ---~i~~---l~~~~~~~~~~l~~sAT~~~-~v~~l----~~~~~i~~~t~-----~~i~~~~~~~~---~k~~~l---- 244 (333)
|..+ +....+...|+++||||++. .+..+ ...+..+...+ ..+.+++...+ .+...+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 1222 22223456899999999963 34333 23443332222 23555554332 222221
Q ss_pred -------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-
Q psy18032 245 -------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE- 300 (333)
Q Consensus 245 -------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~- 300 (333)
.+|||++++.++.++..|. |+++..+|| +.+.+++|++|+++|||||| ++++.||+
T Consensus 241 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~ 320 (434)
T PRK11192 241 KQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINF 320 (434)
T ss_pred hcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEE
Confidence 4899999999999999996 889999998 33566999999999999999 56666665
Q ss_pred ------cccEEEEccCC
Q psy18032 301 ------GRDVVAMARTG 311 (333)
Q Consensus 301 ------~~~~~~~grtG 311 (333)
..|+||+||||
T Consensus 321 d~p~s~~~yiqr~GR~g 337 (434)
T PRK11192 321 DMPRSADTYLHRIGRTG 337 (434)
T ss_pred CCCCCHHHHhhcccccc
Confidence 44999999999
No 21
>KOG0345|consensus
Probab=100.00 E-value=5.4e-45 Score=328.68 Aligned_cols=285 Identities=29% Similarity=0.376 Sum_probs=234.3
Q ss_pred CcccccCC--CHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc--c-CCceEE
Q psy18032 37 GGFQSFGL--GFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--T-SGVRAL 111 (333)
Q Consensus 37 ~~f~~~~l--~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~-~~~~~l 111 (333)
.+|++++. ++++++++.++||+..||+|..+||.+++++||.+.|+||||||+||++|+++.+.+... + ...-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 57888874 499999999999999999999999999999999999999999999999999999954322 1 124799
Q ss_pred EEcccHHHHHHHHHHHHHHhcc-CCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhcc--ccccCchhhHH
Q psy18032 112 ILSPTRELALQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEME--LKLSSIQYTFK 187 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~--~~~~~l~~lV~ 187 (333)
||+|||||+.|+.+++..|... .++.+.+++||.+.++....+.+ +++|+|||||||.+++.+.. ++++++.+||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999998776 78999999999988888777765 79999999999999998854 45669999996
Q ss_pred ----------HHHH---HhhccccceeeeecCCChHHHHHhhh-----cCCcEEEe------CCCceEEEEEec--chhh
Q psy18032 188 ----------FVKE---LGKFTKLQSTCLLGGDSMDNQFARLH-----ASPDIVVA------TPGRFLHIVVEM--ELKL 241 (333)
Q Consensus 188 ----------~i~~---l~~~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~~------t~~~i~~~~~~~--~~k~ 241 (333)
|... |...+|.++.+-+||||+..++..+. ++..|.+. ||.++...|... ..|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 3333 44557889999999999999988874 44455553 676665555443 4455
Q ss_pred hhH-----------HHHhhcchhhHHHHHHHhc----CCCcccccc-----ch-HHHhhhCCCCcccccccc--------
Q psy18032 242 SSI-----------QLSLTDFKQDTSRIALDLV----GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD-------- 292 (333)
Q Consensus 242 ~~l-----------~lif~~~~~~~~~l~~~L~----g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd-------- 292 (333)
..+ .+||..|...+++....+. +.+...+|| .| ..++.|.+.+-.+|+|||
T Consensus 244 ~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi 323 (567)
T KOG0345|consen 244 SQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI 323 (567)
T ss_pred HHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC
Confidence 433 3677788888888876553 667889999 24 456999999999999999
Q ss_pred CCcccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 293 DTIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 293 ~~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
++|+.|++ +.++||+|||| .|.++.|++|
T Consensus 324 p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 324 PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP 363 (567)
T ss_pred CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc
Confidence 78888886 66999999999 6999999987
No 22
>KOG0339|consensus
Probab=100.00 E-value=2.1e-45 Score=333.69 Aligned_cols=286 Identities=31% Similarity=0.480 Sum_probs=243.1
Q ss_pred CCCCcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc-
Q psy18032 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA- 104 (333)
Q Consensus 26 ~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~- 104 (333)
.-...+-+++.++|+.+|+++.|..+..+.-|..|||+|.+++|..+.|+|++.+|.||||||.+|++|++.+++..+.
T Consensus 212 rv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL 291 (731)
T KOG0339|consen 212 RVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL 291 (731)
T ss_pred eeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhh
Confidence 3445566789999999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred --cCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCc
Q psy18032 105 --TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 105 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
..+|.+||++|||+||.|++.++++|++..|+++++++||.+..+|...|+.++.|+|+||+||++++..+.+++.++
T Consensus 292 ~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 292 KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceee
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHH----------H---HHHHhhccccceeeeecCCChHHHHHhhhc-----CCcEEEeCCC----ceEEEEEe---c
Q psy18032 183 QYTFK----------F---VKELGKFTKLQSTCLLGGDSMDNQFARLHA-----SPDIVVATPG----RFLHIVVE---M 237 (333)
Q Consensus 183 ~~lV~----------~---i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~-----~~~i~~~t~~----~i~~~~~~---~ 237 (333)
.|||+ | +..|.......+|+++||||++..++++++ +..++.+..+ .|.|.+.- .
T Consensus 372 S~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~ 451 (731)
T KOG0339|consen 372 SYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE 451 (731)
T ss_pred eEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc
Confidence 99995 2 222334445689999999999998888763 3456655433 35554432 2
Q ss_pred chhhhhH------------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc-----
Q psy18032 238 ELKLSSI------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD----- 292 (333)
Q Consensus 238 ~~k~~~l------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd----- 292 (333)
+.|+..+ +++|+..+.+++.++..|. |+++..+|| +.+.+.+|+.+...||||||
T Consensus 452 ~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaarg 531 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARG 531 (731)
T ss_pred HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcC
Confidence 4455433 4789999999999998876 999999999 23567999999999999999
Q ss_pred ---CCcccccc-------cccEEEEccCC
Q psy18032 293 ---DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 293 ---~~i~~vi~-------~~~~~~~grtG 311 (333)
+++..|+| ..|+|||||||
T Consensus 532 ldI~~ikTVvnyD~ardIdththrigrtg 560 (731)
T KOG0339|consen 532 LDIPSIKTVVNYDFARDIDTHTHRIGRTG 560 (731)
T ss_pred CCccccceeecccccchhHHHHHHhhhcc
Confidence 44445554 45889999999
No 23
>KOG0336|consensus
Probab=100.00 E-value=1.4e-45 Score=327.33 Aligned_cols=302 Identities=26% Similarity=0.438 Sum_probs=241.0
Q ss_pred ceeeccCCCCCCCCcccccCCCcccc-cCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHH
Q psy18032 16 TVTISSNDDNGNTGDKKKKMGGGFQS-FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94 (333)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~ 94 (333)
+.....++-.......-+.+.-+|++ |.-.+++.+.+++.||.+|||+|+++||.++.|.|++.+|+||+|||++|++|
T Consensus 198 n~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~p 277 (629)
T KOG0336|consen 198 NFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLP 277 (629)
T ss_pred CCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhcc
Confidence 33333333333333334566678887 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhc----ccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHH
Q psy18032 95 MLEKLKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLH 170 (333)
Q Consensus 95 ~l~~l~~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~ 170 (333)
.+.++...+ +..++.+|+++||++|+.|+.-.+..+. +-+.+.++++||.+..++.+.++.+++|+|+||++|.+
T Consensus 278 g~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlnd 356 (629)
T KOG0336|consen 278 GFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLND 356 (629)
T ss_pred ceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhh
Confidence 998887644 3458899999999999999988888764 56899999999999999999999999999999999999
Q ss_pred HHHhccccccCchhhHH----------HHHHHhhcc---ccceeeeecCCChHHHHHhhh----cCCcE-EEeCC-----
Q psy18032 171 IVVEMELKLSSIQYTFK----------FVKELGKFT---KLQSTCLLGGDSMDNQFARLH----ASPDI-VVATP----- 227 (333)
Q Consensus 171 ~l~~~~~~~~~l~~lV~----------~i~~l~~~~---~~~~~~l~~sAT~~~~v~~l~----~~~~i-~~~t~----- 227 (333)
+...+.++++.+.|||+ |...+.+++ ...+|+++.|||+++-+++|+ +.|.+ .+++-
T Consensus 357 L~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~ 436 (629)
T KOG0336|consen 357 LQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAV 436 (629)
T ss_pred hhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeee
Confidence 99999999999999996 445555554 357899999999999998886 44533 34433
Q ss_pred CceEEEEEec--chhhhhH------------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCc
Q psy18032 228 GRFLHIVVEM--ELKLSSI------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKK 285 (333)
Q Consensus 228 ~~i~~~~~~~--~~k~~~l------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~ 285 (333)
..+.|.+.-. ..|...+ .++||..+-.|+.|...|. |+++..+|| ++++++.|++|++
T Consensus 437 ~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~v 516 (629)
T KOG0336|consen 437 KSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEV 516 (629)
T ss_pred eeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCce
Confidence 2344544322 2344333 4889999999999987665 999999999 3357899999999
Q ss_pred ccccccc--------CCcccccc-------cccEEEEccCC-CchhhHH
Q psy18032 286 KYVQVTD--------DTIPLVLE-------GRDVVAMARTG-SGKTACF 318 (333)
Q Consensus 286 ~vLvaTd--------~~i~~vi~-------~~~~~~~grtG-~g~~~~~ 318 (333)
+|||||| ++|.+|+| ..|+||+|||| .|++...
T Consensus 517 rILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s 565 (629)
T KOG0336|consen 517 RILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS 565 (629)
T ss_pred EEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce
Confidence 9999999 44555554 33999999999 5655543
No 24
>KOG0343|consensus
Probab=100.00 E-value=5e-45 Score=334.17 Aligned_cols=286 Identities=29% Similarity=0.413 Sum_probs=242.5
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc--ccCCceEEE
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA--ATSGVRALI 112 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~li 112 (333)
..+.|++|+|+...+++|++.+|..||.+|+++||..+.|+|++..|.||||||+||++|+++++.+.. ...|.-|||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalI 146 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALI 146 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEE
Confidence 345899999999999999999999999999999999999999999999999999999999999998743 334778999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cccccCchhhHH----
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQYTFK---- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~---- 187 (333)
|+||||||.|+++++.+.+++.++.+.++.||...+.+...+. +++||||||+||+.++... .++.+++++||+
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH
Confidence 9999999999999999999999999999999999887766655 5899999999999888654 578999999996
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEE-------eCCCceEEEEEec--chhhhhH-
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVV-------ATPGRFLHIVVEM--ELKLSSI- 244 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~-------~t~~~i~~~~~~~--~~k~~~l- 244 (333)
.++.|...+|..+|+++||||-...+..++ ++|.++- +||.++.|.|+-. +.|+..+
T Consensus 226 R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~ 305 (758)
T KOG0343|consen 226 RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLW 305 (758)
T ss_pred HHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHH
Confidence 333344556889999999999998887775 4565543 4788888877654 4555543
Q ss_pred ----------HHHhhcchhhHHHHHHHh---c-CCCcccccc---chHH---HhhhCCCCcccccccc--------CCcc
Q psy18032 245 ----------QLSLTDFKQDTSRIALDL---V-GDSTEMIHK---QRQS---VRKWDPAKKKYVQVTD--------DTIP 296 (333)
Q Consensus 245 ----------~lif~~~~~~~~~l~~~L---~-g~~~~~lh~---~r~~---l~~f~~g~~~vLvaTd--------~~i~ 296 (333)
.+||..+.+++..+++.+ + |++...+|| |+++ ..+|...+--||+||| +.++
T Consensus 306 sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 306 SFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 478999999998887655 4 999999999 4444 4788888999999999 6777
Q ss_pred cccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 297 LVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 297 ~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
.||+ ..|+||+|||+ +|+++.+++|
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~p 421 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTP 421 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcc
Confidence 7885 66999999999 7999998887
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-42 Score=334.67 Aligned_cols=278 Identities=30% Similarity=0.443 Sum_probs=222.6
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhccc-----CCc
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAAT-----SGV 108 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-----~~~ 108 (333)
.....|.+++|++.++++|.++||..||++|.++|+.+++|+|+++++|||||||++|++|+++.+...+.. .++
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 334689999999999999999999999999999999999999999999999999999999999998764322 257
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 109 RALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
++|||+||++|+.|+++.++.+.+..++.+..++||.+...+.+.+.. .++|+|+||++|++++..+...+++++++|+
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 999999999999999999999999899999999999888777766654 6999999999999999988899999999995
Q ss_pred ----------HHHHHh---hccc--cceeeeecCCChHHHHHhh----hcCCcEEEeCC-----CceEEEEEec--chhh
Q psy18032 188 ----------FVKELG---KFTK--LQSTCLLGGDSMDNQFARL----HASPDIVVATP-----GRFLHIVVEM--ELKL 241 (333)
Q Consensus 188 ----------~i~~l~---~~~~--~~~~~l~~sAT~~~~v~~l----~~~~~i~~~t~-----~~i~~~~~~~--~~k~ 241 (333)
|...+. +..+ ...|++++|||++..+..+ ...+.++...+ .++.+++... ..+.
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHH
Confidence 222222 2222 2569999999997665543 33443333222 2344444322 2222
Q ss_pred hh-----------HHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CC
Q psy18032 242 SS-----------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DT 294 (333)
Q Consensus 242 ~~-----------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~ 294 (333)
.. -++|||++++.++.+++.|. |+.+..+|| +| +.+++|++|++++||||| ++
T Consensus 324 ~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~ 403 (475)
T PRK01297 324 KLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDG 403 (475)
T ss_pred HHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccC
Confidence 11 25899999999999999997 889999998 23 556999999999999999 56
Q ss_pred cccccc-------cccEEEEccCC
Q psy18032 295 IPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 295 i~~vi~-------~~~~~~~grtG 311 (333)
++.||+ ..|+||+||+|
T Consensus 404 v~~VI~~~~P~s~~~y~Qr~GRaG 427 (475)
T PRK01297 404 ISHVINFTLPEDPDDYVHRIGRTG 427 (475)
T ss_pred CCEEEEeCCCCCHHHHHHhhCccC
Confidence 666665 55999999999
No 26
>KOG0347|consensus
Probab=100.00 E-value=1.8e-43 Score=323.96 Aligned_cols=289 Identities=27% Similarity=0.396 Sum_probs=228.6
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcc---
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAA--- 104 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--- 104 (333)
.+.+..-.+.|.+|+|+.+++++|.++||.+||++|..++|++..| .|++..|.||||||+||.+|+++++....+
T Consensus 173 ~~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~ 252 (731)
T KOG0347|consen 173 DDSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ 252 (731)
T ss_pred ccccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh
Confidence 3344455679999999999999999999999999999999999999 799999999999999999999997655322
Q ss_pred ------cCCce--EEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc
Q psy18032 105 ------TSGVR--ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 176 (333)
Q Consensus 105 ------~~~~~--~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~ 176 (333)
.+.++ +||++||||||.|+.+.+..++.++++++..++||.....|.+.+...++|+|+||+||+.++....
T Consensus 253 e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n 332 (731)
T KOG0347|consen 253 ELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDN 332 (731)
T ss_pred hhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhh
Confidence 23445 9999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred c---cccCchhhHH----------HHHHHhhc---c-----ccceeeeecCCChHHHHH---------------------
Q psy18032 177 L---KLSSIQYTFK----------FVKELGKF---T-----KLQSTCLLGGDSMDNQFA--------------------- 214 (333)
Q Consensus 177 ~---~~~~l~~lV~----------~i~~l~~~---~-----~~~~~~l~~sAT~~~~v~--------------------- 214 (333)
. .++++++||+ ..+++.++ + ...+|++.||||++-...
T Consensus 333 ~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq 412 (731)
T KOG0347|consen 333 THLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQ 412 (731)
T ss_pred hhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHH
Confidence 5 6888999996 22333332 2 246899999999863211
Q ss_pred hh------hcCCcEEEeCCC-----ce-------------EEEEEecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcc
Q psy18032 215 RL------HASPDIVVATPG-----RF-------------LHIVVEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTE 268 (333)
Q Consensus 215 ~l------~~~~~i~~~t~~-----~i-------------~~~~~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~ 268 (333)
.+ ...|.|+-.||. ++ .+.|+... ....-.+||||+...+.+|+-.|. +++.-
T Consensus 413 ~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~-ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 413 HLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT-RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe-ecCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 11 134566665553 11 11121111 122336899999999999999887 88888
Q ss_pred cccc---chH---HHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC----CchhhHH
Q psy18032 269 MIHK---QRQ---SVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACF 318 (333)
Q Consensus 269 ~lh~---~r~---~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~ 318 (333)
.+|+ |++ .+++|++....||+||| +.+.+||. ..|+||.|||+ .|-+..+
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml 566 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVML 566 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEE
Confidence 9998 444 56999999999999999 55666664 56999999999 4544443
No 27
>KOG0332|consensus
Probab=100.00 E-value=4.5e-43 Score=308.26 Aligned_cols=285 Identities=24% Similarity=0.407 Sum_probs=230.7
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccC
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~ 106 (333)
+++-..++.+|++|+|.|++++++..|+|.+|+.+|..++|.++.. +|+|+++++|+|||.||++.+|.++... ..
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--~~ 159 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--VV 159 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--cc
Confidence 3333456689999999999999999999999999999999999985 7999999999999999999999999873 44
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchhh
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQYT 185 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~l 185 (333)
.|+++.|+|||+||.|..+++.+++++.++++....-|.....- ..+ ..+|+|+||+-+++++.. +.+++..++.+
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 78999999999999999999999999999998888766633221 111 357999999999999988 77899999999
Q ss_pred HH-----------HHH---HHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---h
Q psy18032 186 FK-----------FVK---ELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---L 239 (333)
Q Consensus 186 V~-----------~i~---~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~ 239 (333)
|+ |-| .+.+.+|...|.++||||+.+.++.++ +++..+.. +...+.|++..+. .
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~ 316 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD 316 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh
Confidence 96 222 255667789999999999988776654 55544443 3456777777653 3
Q ss_pred hhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc-----chHH-HhhhCCCCcccccccc--------
Q psy18032 240 KLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQS-VRKWDPAKKKYVQVTD-------- 292 (333)
Q Consensus 240 k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~~-l~~f~~g~~~vLvaTd-------- 292 (333)
|...+ .+|||.|++.|..++..|. |+.+..+|| +|.+ ++.|+.|+.+|||+|+
T Consensus 317 K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv 396 (477)
T KOG0332|consen 317 KYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDV 396 (477)
T ss_pred HHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccccc
Confidence 44433 4899999999999999997 999999999 5654 5999999999999998
Q ss_pred CCcccccc-------------cccEEEEccCC-CchhhHH
Q psy18032 293 DTIPLVLE-------------GRDVVAMARTG-SGKTACF 318 (333)
Q Consensus 293 ~~i~~vi~-------------~~~~~~~grtG-~g~~~~~ 318 (333)
..+..|+| ..|+||||||| -||.+..
T Consensus 397 ~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a 436 (477)
T KOG0332|consen 397 AQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLA 436 (477)
T ss_pred ceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceE
Confidence 33444443 66999999999 4655543
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.7e-41 Score=316.47 Aligned_cols=275 Identities=24% Similarity=0.423 Sum_probs=222.5
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
...+|+++++++.+.++|.++||..|+|+|.++|+.+++|+|++++||||||||++|++|++..+... ..++++||++
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--~~~~~~lil~ 103 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--LNACQALILA 103 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--CCCceEEEEC
Confidence 46899999999999999999999999999999999999999999999999999999999999988642 2367899999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-HH----
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-FV---- 189 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~i---- 189 (333)
|+++|+.|+.+.+..++...++.+..+.|+....++...+.++++|+|+||+++.+++..+.+.+++++++|+ ..
T Consensus 104 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 104 PTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEML 183 (401)
T ss_pred CCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHH
Confidence 9999999999999999888889999999999888888888888999999999999999988888999999994 11
Q ss_pred --------HHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecch---hhhh------
Q psy18032 190 --------KELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEMEL---KLSS------ 243 (333)
Q Consensus 190 --------~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~~---k~~~------ 243 (333)
.++.+..+...|.+++|||+++.+..+. ..+..+.. ....+.+++..... +...
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE 263 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHH
Confidence 1122233456899999999987765542 33322221 12334444443221 1111
Q ss_pred -----HHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc--
Q psy18032 244 -----IQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-- 300 (333)
Q Consensus 244 -----l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-- 300 (333)
-.++||++++.++.+++.|. ++.+..+|| +| +.+++|++|+++|||||| +++..|++
T Consensus 264 ~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~ 343 (401)
T PTZ00424 264 TLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYD 343 (401)
T ss_pred hcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEEC
Confidence 14789999999999999987 788999998 23 456999999999999999 45556664
Q ss_pred -----cccEEEEccCC
Q psy18032 301 -----GRDVVAMARTG 311 (333)
Q Consensus 301 -----~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 344 ~p~s~~~y~qr~GRag 359 (401)
T PTZ00424 344 LPASPENYIHRIGRSG 359 (401)
T ss_pred CCCCHHHEeecccccc
Confidence 55999999999
No 29
>KOG0348|consensus
Probab=100.00 E-value=2.5e-42 Score=315.50 Aligned_cols=291 Identities=25% Similarity=0.405 Sum_probs=226.3
Q ss_pred cccCCCcccccCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc----cC
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA----TS 106 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----~~ 106 (333)
.+.....|.++||++.+...|.. ++++.||.+|+++||.++.|+|++|.++||||||++|++|+++.+..... ..
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 34556799999999999999986 79999999999999999999999999999999999999999999876432 45
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchh
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQY 184 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~ 184 (333)
|+.||||+||||||.|+|+.++++.+.. -+-.+.+.||...+.+...+++|++|||+||+||++++.+ ..+.++.+++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 8999999999999999999999987754 3556677899998888899999999999999999999976 4588999999
Q ss_pred hHH----------HHHHHhhc---c-------------ccceeeeecCCChHHHHHhhh----cCCcEEE----------
Q psy18032 185 TFK----------FVKELGKF---T-------------KLQSTCLLGGDSMDNQFARLH----ASPDIVV---------- 224 (333)
Q Consensus 185 lV~----------~i~~l~~~---~-------------~~~~~~l~~sAT~~~~v~~l~----~~~~i~~---------- 224 (333)
+|+ |-+++..+ + |.+.|.++.|||+.+.+.+++ .+|..+-
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc
Confidence 996 22222222 1 235789999999999998875 2222221
Q ss_pred --------------------eCCCceEEEEEecchhhhhH-----------------HHHhhcchhhHHHHHHHhc----
Q psy18032 225 --------------------ATPGRFLHIVVEMELKLSSI-----------------QLSLTDFKQDTSRIALDLV---- 263 (333)
Q Consensus 225 --------------------~t~~~i~~~~~~~~~k~~~l-----------------~lif~~~~~~~~~l~~~L~---- 263 (333)
+.|..+.+.|.-...|+..+ .+||..+.+-++.=++.+.
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 23445566665554444322 2567666666665544331
Q ss_pred --------------------CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc-------cc
Q psy18032 264 --------------------GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GR 302 (333)
Q Consensus 264 --------------------g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~ 302 (333)
+.+.--+|| .| ..++.|..-+-.||.||| +++..|++ ..
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ad 530 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTAD 530 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHH
Confidence 223456788 23 345899888888999999 56666665 66
Q ss_pred cEEEEccCC----CchhhHHHhhh
Q psy18032 303 DVVAMARTG----SGKTACFLFYF 322 (333)
Q Consensus 303 ~~~~~grtG----~g~~~~~~lp~ 322 (333)
|+||+|||. .|.++.|++|-
T Consensus 531 ylHRvGRTARaG~kG~alLfL~P~ 554 (708)
T KOG0348|consen 531 YLHRVGRTARAGEKGEALLFLLPS 554 (708)
T ss_pred HHHHhhhhhhccCCCceEEEeccc
Confidence 999999998 79999999985
No 30
>KOG0327|consensus
Probab=100.00 E-value=3e-42 Score=304.97 Aligned_cols=284 Identities=26% Similarity=0.441 Sum_probs=238.6
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
+...+|++|+|+++|++.+..+||++|+.+|++||.++.+|.|+++++++|+|||.+|.+++++.+.- ..+..+++++
T Consensus 23 evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~--~~ke~qalil 100 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM--SVKETQALIL 100 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc--chHHHHHHHh
Confidence 45569999999999999999999999999999999999999999999999999999999999999865 3457799999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHH-HHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF-ARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----- 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----- 187 (333)
+||++||.|+.++.+.++...++.+..+.||.+...+. ......++|+++||+|+.+++..+.+..+.++++|+
T Consensus 101 aPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 101 APTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred cchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 99999999999999999999999999999998877444 444456999999999999999999999999999997
Q ss_pred --------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEec--chhhhhH----
Q psy18032 188 --------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEM--ELKLSSI---- 244 (333)
Q Consensus 188 --------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~--~~k~~~l---- 244 (333)
++.++.+.+|.+.|++++|||++.++..+. +.|..+.. |...+.|++... +.|+..+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~ 260 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLY 260 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHH
Confidence 566677778899999999999998876653 44433332 444567777654 3344433
Q ss_pred -----HHHhhcchhhHHHHHHHhc--CCCcccccc-----chH-HHhhhCCCCcccccccc--------CCcccccc---
Q psy18032 245 -----QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ-SVRKWDPAKKKYVQVTD--------DTIPLVLE--- 300 (333)
Q Consensus 245 -----~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~-~l~~f~~g~~~vLvaTd--------~~i~~vi~--- 300 (333)
.++|||+++.++.+...|. ++.+..+|+ +|. .+..|++|..+||+.|| .+++.|+|
T Consensus 261 ~~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydl 340 (397)
T KOG0327|consen 261 RRVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDL 340 (397)
T ss_pred HhhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecc
Confidence 5889999999999999996 889999998 343 45999999999999999 44555665
Q ss_pred ----cccEEEEccCC----CchhhHHH
Q psy18032 301 ----GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 301 ----~~~~~~~grtG----~g~~~~~~ 319 (333)
..|+||+||+| .|-++.|+
T Consensus 341 P~~~~~yihR~gr~gr~grkg~~in~v 367 (397)
T KOG0327|consen 341 PARKENYIHRIGRAGRFGRKGVAINFV 367 (397)
T ss_pred ccchhhhhhhcccccccCCCceeeeee
Confidence 55999999999 56655554
No 31
>KOG0334|consensus
Probab=100.00 E-value=1.3e-41 Score=332.79 Aligned_cols=292 Identities=28% Similarity=0.476 Sum_probs=241.1
Q ss_pred cccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc---cC
Q psy18032 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA---TS 106 (333)
Q Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~ 106 (333)
..-+++..+|.+.|++..++..++++||..|+|||.+|||+|+.|+|+|.+|.||||||++|++|++.++...++ ..
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd 437 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD 437 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCC
Confidence 334688999999999999999999999999999999999999999999999999999999999999988776542 34
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc---cccCch
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL---KLSSIQ 183 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~---~~~~l~ 183 (333)
||.+||++||++|+.|+++.++.|.+.+++++++++||....++...++.++.|+||||+|+++++..+.- +++++.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999976654 555555
Q ss_pred hhHH----------HHHH---HhhccccceeeeecCCChHHHHHhhh-----cCCcEEEeCCC----ceEEEEEec---c
Q psy18032 184 YTFK----------FVKE---LGKFTKLQSTCLLGGDSMDNQFARLH-----ASPDIVVATPG----RFLHIVVEM---E 238 (333)
Q Consensus 184 ~lV~----------~i~~---l~~~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~~t~~----~i~~~~~~~---~ 238 (333)
++|+ |.+. |.+-++..+|+++||||++..+..++ .+..++++-.+ ++.+.+.-. +
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~ 597 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIEN 597 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCch
Confidence 8885 1111 22223457899999999999887765 33456665332 344444332 2
Q ss_pred hhhhhH------------HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc------
Q psy18032 239 LKLSSI------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD------ 292 (333)
Q Consensus 239 ~k~~~l------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd------ 292 (333)
.|+.++ ++|||+....|+.+.+.|. |++|..+|| .| ..+++|+++.+.+|+||+
T Consensus 598 eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGL 677 (997)
T KOG0334|consen 598 EKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGL 677 (997)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccc
Confidence 333333 5899999999999998885 999999998 34 356999999999999998
Q ss_pred --CCcccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 293 --DTIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 293 --~~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
.+++.|+| ..|+||.|||| +|-+..|+.|
T Consensus 678 dv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 678 DVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred ccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeCh
Confidence 56777776 55999999988 6777777777
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.6e-38 Score=318.00 Aligned_cols=264 Identities=19% Similarity=0.233 Sum_probs=196.7
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
.|++++.++|++.||++|+++|.++||.+++|+|+++++|||||||+||++|+++.+... .+.++|||+||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l~PtraLa~q 96 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYLAPTKALAAD 96 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEEcChHHHHHH
Confidence 389999999999999999999999999999999999999999999999999999998762 36799999999999999
Q ss_pred HHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc----cccccCchhhHH-----------
Q psy18032 123 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM----ELKLSSIQYTFK----------- 187 (333)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~----~~~~~~l~~lV~----------- 187 (333)
+++.++.++ ..++++..+.|+.+.. +...+.++++|+|+||+++...+... ...+++++++|+
T Consensus 97 ~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg 174 (742)
T TIGR03817 97 QLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFG 174 (742)
T ss_pred HHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccH
Confidence 999999987 4578887777777654 44666778999999999987433211 123788888885
Q ss_pred -----HHHHHhh---ccccceeeeecCCChHHHHH---hhhcCCcEEEeC---CCceEEEEE-ecc--------------
Q psy18032 188 -----FVKELGK---FTKLQSTCLLGGDSMDNQFA---RLHASPDIVVAT---PGRFLHIVV-EME-------------- 238 (333)
Q Consensus 188 -----~i~~l~~---~~~~~~~~l~~sAT~~~~v~---~l~~~~~i~~~t---~~~i~~~~~-~~~-------------- 238 (333)
.+..+.+ ..+.++|++++|||+++... .+...+..++.. |....++.. ...
T Consensus 175 ~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~ 254 (742)
T TIGR03817 175 SHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRR 254 (742)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCcccccccccccccc
Confidence 1111222 12456899999999975443 333334333321 111111111 000
Q ss_pred ----hhhhh---------HHHHhhcchhhHHHHHHHhc----------CCCcccccc------chHHHhhhCCCCccccc
Q psy18032 239 ----LKLSS---------IQLSLTDFKQDTSRIALDLV----------GDSTEMIHK------QRQSVRKWDPAKKKYVQ 289 (333)
Q Consensus 239 ----~k~~~---------l~lif~~~~~~~~~l~~~L~----------g~~~~~lh~------~r~~l~~f~~g~~~vLv 289 (333)
.+... .+++||++++.|+.++..|. +.++..+|| |++.+++|++|++++||
T Consensus 255 ~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLV 334 (742)
T TIGR03817 255 SASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVA 334 (742)
T ss_pred chHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEE
Confidence 11111 14889999999999997764 356788998 34556999999999999
Q ss_pred ccc--------CCcccccc-------cccEEEEccCC
Q psy18032 290 VTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 290 aTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
||| .+++.||+ ..|+||+||||
T Consensus 335 aTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaG 371 (742)
T TIGR03817 335 TTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAG 371 (742)
T ss_pred ECchHhccCCcccccEEEEeCCCCCHHHHHHhccccC
Confidence 999 45666665 55999999999
No 33
>KOG4284|consensus
Probab=100.00 E-value=2.3e-39 Score=301.52 Aligned_cols=280 Identities=25% Similarity=0.395 Sum_probs=234.5
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCc
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGV 108 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 108 (333)
.+.-..-...|+++-|..+++..|+..+|..||++|..|||.++.+.|+|++|..|+|||++|...+++.+... ...+
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~--~~~~ 94 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR--SSHI 94 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc--cCcc
Confidence 34445566899999999999999999999999999999999999999999999999999999999999988773 4478
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhc-cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 109 RALILSPTRELALQTFKFVKELGK-FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
+.+|++||||+|.|+.+.+..++. +.|.+|.+++||+........++ .++|+||||+|++.+.+.+.++.++++++|+
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVL 173 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVL 173 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEe
Confidence 999999999999999999999875 57899999999999887766666 4899999999999999999999999999997
Q ss_pred -----------HHHHHhh---ccccceeeeecCCChHHHHH----hhhcCCcEEEeCCC-----ceEEEEEecc------
Q psy18032 188 -----------FVKELGK---FTKLQSTCLLGGDSMDNQFA----RLHASPDIVVATPG-----RFLHIVVEME------ 238 (333)
Q Consensus 188 -----------~i~~l~~---~~~~~~~~l~~sAT~~~~v~----~l~~~~~i~~~t~~-----~i~~~~~~~~------ 238 (333)
|-+++.. -+|..+|++.+|||+++.+. +.+++|..+.-... .+.|+++...
T Consensus 174 DEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsv 253 (980)
T KOG4284|consen 174 DEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSV 253 (980)
T ss_pred ccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchH
Confidence 4444443 46789999999999986654 44566766654332 2456665331
Q ss_pred ----hhhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc---ch---HHHhhhCCCCcccccccc---
Q psy18032 239 ----LKLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK---QR---QSVRKWDPAKKKYVQVTD--- 292 (333)
Q Consensus 239 ----~k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~---~r---~~l~~f~~g~~~vLvaTd--- 292 (333)
.|+..+ ++|||+....|+.++..|. |+.+..+.| |. .++++++++.++|||+||
T Consensus 254 eemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLta 333 (980)
T KOG4284|consen 254 EEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTA 333 (980)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhh
Confidence 244433 6999999999999999997 999999998 33 356899999999999999
Q ss_pred -----CCcccccc-------cccEEEEccCC
Q psy18032 293 -----DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 293 -----~~i~~vi~-------~~~~~~~grtG 311 (333)
+.+..|+| ..|+|||||+|
T Consensus 334 RGIDa~~vNLVVNiD~p~d~eTY~HRIGRAg 364 (980)
T KOG4284|consen 334 RGIDADNVNLVVNIDAPADEETYFHRIGRAG 364 (980)
T ss_pred ccCCccccceEEecCCCcchHHHHHHhhhcc
Confidence 55667776 66999999999
No 34
>KOG0337|consensus
Probab=100.00 E-value=1.4e-38 Score=283.77 Aligned_cols=288 Identities=43% Similarity=0.647 Sum_probs=233.1
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEE
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~l 111 (333)
+.+.+.+|..+||+..+.+++.+.||..|||+|+++||.++.|+|+...|-||||||.||++|+++++.... ..|.+++
T Consensus 16 k~kg~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-~~g~Ral 94 (529)
T KOG0337|consen 16 KKKGSGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRAL 94 (529)
T ss_pred ccCCCCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-cccccee
Confidence 334479999999999999999999999999999999999999999999999999999999999999998866 4578999
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
+++||++|+.|..+..+.+++++++++++++||.+.+++...+..+++||++||++++++...-.+.++.+.|+|+
T Consensus 95 ilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 95 ILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred eccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999988899999999995
Q ss_pred ------HHHHHhhc---cccceeeeecCCChHHHHHhhh----cCCcEEEeCC-Cc------eEEEEEecchhhhhH---
Q psy18032 188 ------FVKELGKF---TKLQSTCLLGGDSMDNQFARLH----ASPDIVVATP-GR------FLHIVVEMELKLSSI--- 244 (333)
Q Consensus 188 ------~i~~l~~~---~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~t~-~~------i~~~~~~~~~k~~~l--- 244 (333)
|-+.+..+ ++..+|+++||||++......+ .+|..+-... .. ..-+.+..+.|...+
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHH
Confidence 33343333 4556799999999997765544 2333332111 11 122223334444333
Q ss_pred ---------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCccccc
Q psy18032 245 ---------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVL 299 (333)
Q Consensus 245 ---------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi 299 (333)
.++|+.|+..++.+...|+ |+.+..+.+ ++..+.+|+.++..+||.|| +-.+.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 4789999999999998887 777776665 23356999999999999999 3444556
Q ss_pred c-------cccEEEEccCC----CchhhHHHh
Q psy18032 300 E-------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 300 ~-------~~~~~~~grtG----~g~~~~~~l 320 (333)
| ..++||+||+. +|.+.+++.
T Consensus 335 nyd~p~~~klFvhRVgr~aragrtg~aYs~V~ 366 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAGRTGRAYSLVA 366 (529)
T ss_pred cccCCCCCceEEEEecchhhccccceEEEEEe
Confidence 5 56899999887 455554443
No 35
>KOG0344|consensus
Probab=100.00 E-value=9.6e-38 Score=289.36 Aligned_cols=298 Identities=26% Similarity=0.347 Sum_probs=229.7
Q ss_pred CCCCCCCCcccccCCCcccc----cCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHH
Q psy18032 22 NDDNGNTGDKKKKMGGGFQS----FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97 (333)
Q Consensus 22 ~~~~~~~~~~~~~~~~~f~~----~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~ 97 (333)
.....-.+.+-+.+..+|++ +..++.+++.+.+.||..|+|+|.+++|.++.++|+++|||||||||++|.+|+++
T Consensus 117 ~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~ 196 (593)
T KOG0344|consen 117 SNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQ 196 (593)
T ss_pred cceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHH
Confidence 33444455666777888987 67999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhc---ccCCceEEEEcccHHHHHHHHHHHHHHh--ccCCceEEEEECCcchHHHH-HHhhCCCCEEEECchHHHHH
Q psy18032 98 KLKTHA---ATSGVRALILSPTRELALQTFKFVKELG--KFTKLQSTCLLGGDSMDNQF-ARLHASPDIVVATPGRFLHI 171 (333)
Q Consensus 98 ~l~~~~---~~~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~l~~~~~IlI~TP~rll~~ 171 (333)
++.... ...|.+++|++|+++|+.|++..++++. ..++..++.+.......+.. ......++|+|+||-++..+
T Consensus 197 ~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~ 276 (593)
T KOG0344|consen 197 HLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGL 276 (593)
T ss_pred HHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHH
Confidence 988754 2457899999999999999999999988 56666666555443332221 22233589999999999999
Q ss_pred HHhcc--ccccCchhhHH-----------HHHHHhhcc----ccceeeeecCCChHHHHHhhhc-----CCcEEEeCCC-
Q psy18032 172 VVEME--LKLSSIQYTFK-----------FVKELGKFT----KLQSTCLLGGDSMDNQFARLHA-----SPDIVVATPG- 228 (333)
Q Consensus 172 l~~~~--~~~~~l~~lV~-----------~i~~l~~~~----~~~~~~l~~sAT~~~~v~~l~~-----~~~i~~~t~~- 228 (333)
+..+. ++++.+.++|+ |...+..+. ......-+||||++..+++|+. ...++++..+
T Consensus 277 ~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~s 356 (593)
T KOG0344|consen 277 LGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNS 356 (593)
T ss_pred hcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchh
Confidence 98876 78999999996 333333332 2345566899999999998862 3356666543
Q ss_pred ---ceEEEEEec-chhhhhH-------------HHHhhcchhhHHHHHHHhc---CCCcccccc------chHHHhhhCC
Q psy18032 229 ---RFLHIVVEM-ELKLSSI-------------QLSLTDFKQDTSRIALDLV---GDSTEMIHK------QRQSVRKWDP 282 (333)
Q Consensus 229 ---~i~~~~~~~-~~k~~~l-------------~lif~~~~~~~~~l~~~L~---g~~~~~lh~------~r~~l~~f~~ 282 (333)
++.|-+..+ ..+-+.+ .+||+.+.++|.+|+..|. ++++.++|| +.+.+++|+.
T Consensus 357 a~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 357 ANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred HhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc
Confidence 344444433 2222211 5889999999999998883 889999998 3357899999
Q ss_pred CCcccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHH
Q psy18032 283 AKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 283 g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
|++|||+||| ..+..||| -.|+||+|||| +|+|++|.
T Consensus 437 g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 437 GKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred cCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 9999999999 55666665 33999999999 78887775
No 36
>KOG0350|consensus
Probab=100.00 E-value=9.3e-37 Score=277.20 Aligned_cols=290 Identities=23% Similarity=0.318 Sum_probs=217.0
Q ss_pred CcccccCCCHHHHH----------HHHhCCCCCCcHHHHhHHHHHhc---------CCcEEEECCCCcHHHHHHHHHHHH
Q psy18032 37 GGFQSFGLGFEVLK----------GVLKRGYKIPTPIQRKTIPLVLE---------GRDVVAMARTGSGKTACFLIPMLE 97 (333)
Q Consensus 37 ~~f~~~~l~~~l~~----------~l~~~g~~~~~~~Q~~~i~~i~~---------g~d~l~~a~TGsGKT~~~~l~~l~ 97 (333)
..|+.+++++.+.. ++.++++.+..|+|..++|.++. ++|+.|.||||||||+||.+|+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 46777887776554 49999999999999999999853 579999999999999999999999
Q ss_pred HhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCC-----CCEEEECchHHHHHH
Q psy18032 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-----PDIVVATPGRFLHIV 172 (333)
Q Consensus 98 ~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~IlI~TP~rll~~l 172 (333)
.+...+-+ ..+||||+||++|+.|+++.|.++....|+.|+.+.|..+.+.+.+.+.+. .+|||+||+||.+++
T Consensus 207 ~L~~R~v~-~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 207 LLSSRPVK-RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHccCCcc-ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 98875433 479999999999999999999999999999999999999988888887663 489999999999999
Q ss_pred H-hccccccCchhhHH-HHH-------------------------------------------HHhhc---cccceeeee
Q psy18032 173 V-EMELKLSSIQYTFK-FVK-------------------------------------------ELGKF---TKLQSTCLL 204 (333)
Q Consensus 173 ~-~~~~~~~~l~~lV~-~i~-------------------------------------------~l~~~---~~~~~~~l~ 204 (333)
. ...+++++++|+|+ ..| ++... +....+.+.
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred cCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 8 56799999999996 000 01100 011233566
Q ss_pred cCCChHHHHHhh---h-cCCcEEE---------eCCCceEEEEEecchhhhhH-------------HHHhhcchhhHHHH
Q psy18032 205 GGDSMDNQFARL---H-ASPDIVV---------ATPGRFLHIVVEMELKLSSI-------------QLSLTDFKQDTSRI 258 (333)
Q Consensus 205 ~sAT~~~~v~~l---~-~~~~i~~---------~t~~~i~~~~~~~~~k~~~l-------------~lif~~~~~~~~~l 258 (333)
+|||++..-.++ . ..|...- ..|..+.+.++-.+.+++.+ .++|+++...+.++
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl 445 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRL 445 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHH
Confidence 788876443333 2 2232221 24555666665555444332 37799999999999
Q ss_pred HHHhc------CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 259 ALDLV------GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 259 ~~~L~------g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
+..|. ++++..+.| .| +.+++|..|++++|||+| .+++.||| ..|+||+||||
T Consensus 446 ~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTA 525 (620)
T KOG0350|consen 446 AHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTA 525 (620)
T ss_pred HHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccc
Confidence 97774 455556665 23 556999999999999999 56666776 55999999999
Q ss_pred CchhhHHHhhhhhhcc
Q psy18032 312 SGKTACFLFYFFFRFD 327 (333)
Q Consensus 312 ~g~~~~~~lp~~~~~~ 327 (333)
..-...|++.+++..+
T Consensus 526 RAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 526 RAGQDGYAITLLDKHE 541 (620)
T ss_pred cccCCceEEEeecccc
Confidence 4444456666665544
No 37
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=292.28 Aligned_cols=277 Identities=21% Similarity=0.310 Sum_probs=217.4
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc---ccCCceEEEEcccHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA---ATSGVRALILSPTRELA 120 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~~~lil~Pt~~L~ 120 (333)
|++.+.+++++. |..|||.|.++||.+.+|+|+|++||||||||+++++|+++.+.... ...+..||||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 889999999998 99999999999999999999999999999999999999999998862 23468999999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc--cccCchhhHH-----------
Q psy18032 121 LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL--KLSSIQYTFK----------- 187 (333)
Q Consensus 121 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~--~~~~l~~lV~----------- 187 (333)
+++.+.++..+..+|+.+...+|+++..+..+..++.|||||+|||.|.-++....+ .+++++++|+
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999999999999998888888999999999999988876544 5899999994
Q ss_pred ------HHHHHhhccccceeeeecCCChH--HHHHhhhcC---C-cEEEeCCCc-eEEEEEec--c--------------
Q psy18032 188 ------FVKELGKFTKLQSTCLLGGDSMD--NQFARLHAS---P-DIVVATPGR-FLHIVVEM--E-------------- 238 (333)
Q Consensus 188 ------~i~~l~~~~~~~~~~l~~sAT~~--~~v~~l~~~---~-~i~~~t~~~-i~~~~~~~--~-------------- 238 (333)
-+..+..+.+ +.|.+..|||.. .++.++.-+ + .|+..+..+ ...-+..- .
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~ 245 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYER 245 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHH
Confidence 2333444445 789999999985 556666522 2 233222221 11111100 0
Q ss_pred ----hhhhhHHHHhhcchhhHHHHHHHhc---CCCcccccc------chHHHhhhCCCCcccccccc--------CCccc
Q psy18032 239 ----LKLSSIQLSLTDFKQDTSRIALDLV---GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPL 297 (333)
Q Consensus 239 ----~k~~~l~lif~~~~~~~~~l~~~L~---g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~ 297 (333)
.+.+..++||+||+..+|.++..|+ +..+..-|| ++.+.++|++|+.+++|||. .+++.
T Consensus 246 i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdl 325 (814)
T COG1201 246 IAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDL 325 (814)
T ss_pred HHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceE
Confidence 1111225999999999999999887 356666676 23445999999999999997 67888
Q ss_pred ccc-------cccEEEEccCC---CchhhHHHhhh
Q psy18032 298 VLE-------GRDVVAMARTG---SGKTACFLFYF 322 (333)
Q Consensus 298 vi~-------~~~~~~~grtG---~g~~~~~~lp~ 322 (333)
|++ +..+||+||+| .+...++++|.
T Consensus 326 VIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 326 VIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred EEEeCCcHHHHHHhHhccccccccCCcccEEEEec
Confidence 886 66999999999 34344455443
No 38
>KOG0329|consensus
Probab=100.00 E-value=6.3e-37 Score=257.35 Aligned_cols=182 Identities=27% Similarity=0.474 Sum_probs=166.7
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
..++.|.++-|.|++++++-+.||++|+.+|.+|||...-|.|++++|.+|.|||++|+++.++.+.... ....++++
T Consensus 39 ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~--g~vsvlvm 116 (387)
T KOG0329|consen 39 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD--GQVSVLVM 116 (387)
T ss_pred EeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC--CeEEEEEE
Confidence 5568999999999999999999999999999999999999999999999999999999999999998743 36789999
Q ss_pred cccHHHHHHHHHHHHHHhcc-CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----
Q psy18032 114 SPTRELALQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----- 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----- 187 (333)
|.|||||.|+.+...++.++ +++++++++||.+.+...+.+++.|||+|+||+|++.+.+++.+++++++.+|+
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 99999999999999999887 479999999999998888889999999999999999999999999999999996
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+.++.++.|...|+++||||++++++...
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC 235 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVC 235 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHH
Confidence 444566677889999999999998887654
No 39
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.8e-35 Score=294.11 Aligned_cols=266 Identities=17% Similarity=0.199 Sum_probs=193.4
Q ss_pred Cccc--ccCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 37 GGFQ--SFGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 37 ~~f~--~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
..|. .++....+...+++ +||..|+|+|.++|++++.|+|+++++|||+|||+||++|++.. ++.+|||
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------~GiTLVI 506 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------PGITLVI 506 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------CCcEEEE
Confidence 3465 46677778777776 69999999999999999999999999999999999999999864 4589999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh------CCCCEEEECchHHHH--HHHhc--cc-cccCc
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH------ASPDIVVATPGRFLH--IVVEM--EL-KLSSI 182 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~IlI~TP~rll~--~l~~~--~~-~~~~l 182 (333)
+|+++|+.+++..+.. .++.+..+.++....++...+. ..++||++|||++.. .+... .+ ....+
T Consensus 507 SPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~L 582 (1195)
T PLN03137 507 SPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLL 582 (1195)
T ss_pred eCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccc
Confidence 9999999988877766 5899999999988777665543 358999999999862 12111 11 12335
Q ss_pred hhhHH------------HHHHHhhcc-----ccceeeeecCCChHHHHHh----hh--cCCcEEEeCC--CceEEEEEec
Q psy18032 183 QYTFK------------FVKELGKFT-----KLQSTCLLGGDSMDNQFAR----LH--ASPDIVVATP--GRFLHIVVEM 237 (333)
Q Consensus 183 ~~lV~------------~i~~l~~~~-----~~~~~~l~~sAT~~~~v~~----l~--~~~~i~~~t~--~~i~~~~~~~ 237 (333)
.++|+ |.+++..+. ....+++++|||++..+.. .. ..+.++..+. +++.+.+...
T Consensus 583 slIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k 662 (1195)
T PLN03137 583 ARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPK 662 (1195)
T ss_pred ceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEecc
Confidence 55554 444443221 1256788999999876544 11 2334444332 3444444433
Q ss_pred chh-h------------hhHHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc----
Q psy18032 238 ELK-L------------SSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD---- 292 (333)
Q Consensus 238 ~~k-~------------~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd---- 292 (333)
..+ . ....+|||+++++|+.++..|. |+++..||| +| +.+++|.+|+++|||||+
T Consensus 663 ~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGM 742 (1195)
T PLN03137 663 TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGM 742 (1195)
T ss_pred chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhc
Confidence 211 0 1125899999999999999997 999999998 33 456999999999999998
Q ss_pred ----CCcccccc-------cccEEEEccCC-Cch
Q psy18032 293 ----DTIPLVLE-------GRDVVAMARTG-SGK 314 (333)
Q Consensus 293 ----~~i~~vi~-------~~~~~~~grtG-~g~ 314 (333)
+++..||+ ..||||+|||| .|+
T Consensus 743 GIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~ 776 (1195)
T PLN03137 743 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ 776 (1195)
T ss_pred CCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCC
Confidence 45555553 33999999999 454
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.2e-34 Score=295.36 Aligned_cols=267 Identities=21% Similarity=0.270 Sum_probs=196.3
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc----cCCceEEEEcccHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA----TSGVRALILSPTREL 119 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~lil~Pt~~L 119 (333)
|++.+.+.+++ +|..|||+|.++||.+++|+|++++||||||||++|++|+++.+..... .+++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 77888888776 7999999999999999999999999999999999999999999875321 346789999999999
Q ss_pred HHHHHHHHHH-------Hh----ccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc--cccCchhh
Q psy18032 120 ALQTFKFVKE-------LG----KFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL--KLSSIQYT 185 (333)
Q Consensus 120 ~~q~~~~~~~-------~~----~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~--~~~~l~~l 185 (333)
++|+++.+.. ++ ... ++++...+|+.+..++.+.+.+.++|+|+||+++..++..... .+++++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999987653 22 223 7788999999998888778888899999999999888765543 47888888
Q ss_pred HH-H----------------HHHHhhccccceeeeecCCChHH--HHHhhhcC--------CcEEEeCC-C-ceE-EEE-
Q psy18032 186 FK-F----------------VKELGKFTKLQSTCLLGGDSMDN--QFARLHAS--------PDIVVATP-G-RFL-HIV- 234 (333)
Q Consensus 186 V~-~----------------i~~l~~~~~~~~~~l~~sAT~~~--~v~~l~~~--------~~i~~~t~-~-~i~-~~~- 234 (333)
|+ . +..+..+.+...|.+++|||+++ .+..+..+ +..++... . .+. ...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~ 256 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVIS 256 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEec
Confidence 84 1 12222333356789999999864 44444321 11122111 1 110 000
Q ss_pred ------Eecch--------------hhhhHHHHhhcchhhHHHHHHHhcC--------CCcccccc-----ch-HHHhhh
Q psy18032 235 ------VEMEL--------------KLSSIQLSLTDFKQDTSRIALDLVG--------DSTEMIHK-----QR-QSVRKW 280 (333)
Q Consensus 235 ------~~~~~--------------k~~~l~lif~~~~~~~~~l~~~L~g--------~~~~~lh~-----~r-~~l~~f 280 (333)
..... +...-.+||||+++.|+.++..|.. ..+..+|| +| +.+++|
T Consensus 257 p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~f 336 (876)
T PRK13767 257 PVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKL 336 (876)
T ss_pred cCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHH
Confidence 00000 0011258999999999999988852 56788887 33 455999
Q ss_pred CCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 281 DPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 281 ~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
++|++++||||+ ++++.||+ ..|+||+||+|
T Consensus 337 k~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaG 382 (876)
T PRK13767 337 KRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAG 382 (876)
T ss_pred HcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCC
Confidence 999999999998 55667775 55999999999
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.4e-34 Score=275.45 Aligned_cols=246 Identities=18% Similarity=0.208 Sum_probs=178.2
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.+||+.|+|+|.++|+++++|+|+++++|||||||+||++|++.. ++.+||++||++|+.|+++.++.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------~~~~lVi~P~~~L~~dq~~~l~~---- 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------DGITLVISPLISLMEDQVLQLKA---- 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------CCcEEEEecHHHHHHHHHHHHHH----
Confidence 469999999999999999999999999999999999999999853 45799999999999999999886
Q ss_pred CCceEEEEECCcchHHHHHH---hh-CCCCEEEECchHHHHHH-Hhccc-cccCchhhHH------------HHHHHhhc
Q psy18032 134 TKLQSTCLLGGDSMDNQFAR---LH-ASPDIVVATPGRFLHIV-VEMEL-KLSSIQYTFK------------FVKELGKF 195 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~---l~-~~~~IlI~TP~rll~~l-~~~~~-~~~~l~~lV~------------~i~~l~~~ 195 (333)
.++.+..+.++....++... +. ..++|+++||+++.... ....+ ...+++++|+ |.+++..+
T Consensus 74 ~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 74 SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 47788877777766543322 22 34899999999976322 11112 4566677764 22332221
Q ss_pred ---c--ccceeeeecCCChHHHHHhh------hcCCcEEEeCCC--ceEEEEEecc-hhhh------------hHHHHhh
Q psy18032 196 ---T--KLQSTCLLGGDSMDNQFARL------HASPDIVVATPG--RFLHIVVEME-LKLS------------SIQLSLT 249 (333)
Q Consensus 196 ---~--~~~~~~l~~sAT~~~~v~~l------~~~~~i~~~t~~--~i~~~~~~~~-~k~~------------~l~lif~ 249 (333)
. ....+.+++|||+++.+... ...+.+...+.. ++...+.... .... ...+|||
T Consensus 154 ~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~ 233 (470)
T TIGR00614 154 GSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYC 233 (470)
T ss_pred HHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEE
Confidence 1 13567899999998765332 134555554333 3333333222 1111 1138999
Q ss_pred cchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc-------cccEEE
Q psy18032 250 DFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVA 306 (333)
Q Consensus 250 ~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~ 306 (333)
++++.|+.+++.|. |+++..+|| +| +.+++|++|+++|||||| +++..||+ ..|+||
T Consensus 234 ~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr 313 (470)
T TIGR00614 234 PSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQE 313 (470)
T ss_pred CcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhh
Confidence 99999999999996 899999998 33 456999999999999998 45555554 449999
Q ss_pred EccCC
Q psy18032 307 MARTG 311 (333)
Q Consensus 307 ~grtG 311 (333)
+||+|
T Consensus 314 ~GRaG 318 (470)
T TIGR00614 314 SGRAG 318 (470)
T ss_pred hcCcC
Confidence 99999
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-33 Score=285.21 Aligned_cols=264 Identities=17% Similarity=0.176 Sum_probs=194.9
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
|.|++++|++++++++++.||.+|+|+|.++++. +..|+|++++||||||||++|.+|++..+.. +.++||++|
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----~~kal~i~P 75 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----GGKALYIVP 75 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----CCcEEEEeC
Confidence 5799999999999999999999999999999998 7889999999999999999999999999864 668999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh--
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG-- 193 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~-- 193 (333)
+++||.|+++.++++.. .|+++..++|+...... ....++|+|+||+++..++.++...+.+++++|+ |+++
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvVi--DE~H~l 149 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVV--DEVHLI 149 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEE--ECcccc
Confidence 99999999999998754 48999999988755432 2245899999999999998876666788888884 2211
Q ss_pred --------------h--ccccceeeeecCCChH--HHHHhhhcCCcEEEe-CCCceEE--------------EEEec---
Q psy18032 194 --------------K--FTKLQSTCLLGGDSMD--NQFARLHASPDIVVA-TPGRFLH--------------IVVEM--- 237 (333)
Q Consensus 194 --------------~--~~~~~~~~l~~sAT~~--~~v~~l~~~~~i~~~-t~~~i~~--------------~~~~~--- 237 (333)
+ ......|++++|||++ +.+..+.....+... .|-.+.. .....
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~ 229 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK 229 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccc
Confidence 1 1234679999999985 455555432111000 0000000 00000
Q ss_pred chh---------hhhHHHHhhcchhhHHHHHHHhcC--------------------------------------CCcccc
Q psy18032 238 ELK---------LSSIQLSLTDFKQDTSRIALDLVG--------------------------------------DSTEMI 270 (333)
Q Consensus 238 ~~k---------~~~l~lif~~~~~~~~~l~~~L~g--------------------------------------~~~~~l 270 (333)
... ....++|||++++.|+.++..|.. ..++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 230 DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Confidence 000 111258999999999998876641 134566
Q ss_pred cc-----chHH-HhhhCCCCcccccccc--------CCcccccc----------------cccEEEEccCC
Q psy18032 271 HK-----QRQS-VRKWDPAKKKYVQVTD--------DTIPLVLE----------------GRDVVAMARTG 311 (333)
Q Consensus 271 h~-----~r~~-l~~f~~g~~~vLvaTd--------~~i~~vi~----------------~~~~~~~grtG 311 (333)
|+ +|+. .+.|++|+++|||||+ ++...||. ..|+|++||+|
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAG 380 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAG 380 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCC
Confidence 76 3444 4999999999999998 44444443 23889999999
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-33 Score=281.46 Aligned_cols=265 Identities=18% Similarity=0.214 Sum_probs=196.1
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
++|+++++++.+.+.+++.||++|+|+|.++++. +++|+|++++||||||||++|.+|+++.+.. .+.++|||+|
T Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----~~~~~l~l~P 76 (720)
T PRK00254 1 MKVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----EGGKAVYLVP 76 (720)
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----cCCeEEEEeC
Confidence 5799999999999999999999999999999997 8999999999999999999999999998775 2568999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh--
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG-- 193 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~-- 193 (333)
+++|+.|+++.++.+. ..++++..++|+.+.... ....++|+|+||+++..++.++...+++++++|+ |+++
T Consensus 77 ~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvVi--DE~H~l 150 (720)
T PRK00254 77 LKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVA--DEIHLI 150 (720)
T ss_pred hHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEE--cCcCcc
Confidence 9999999999999864 368999999998765432 2246899999999999998877677889999984 3322
Q ss_pred -------------hccccceeeeecCCChH--HHHHhhhcCCcEEE-eCCCceEEE-E----E---ecc-hh--------
Q psy18032 194 -------------KFTKLQSTCLLGGDSMD--NQFARLHASPDIVV-ATPGRFLHI-V----V---EME-LK-------- 240 (333)
Q Consensus 194 -------------~~~~~~~~~l~~sAT~~--~~v~~l~~~~~i~~-~t~~~i~~~-~----~---~~~-~k-------- 240 (333)
..+....|++++|||++ +.+..+.....+.. ..|-.+... + . ... .+
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 22345689999999985 45555543221111 111111100 0 0 000 00
Q ss_pred ------hhhHHHHhhcchhhHHHHHHHhc-----------------------------------CCCcccccc-----ch
Q psy18032 241 ------LSSIQLSLTDFKQDTSRIALDLV-----------------------------------GDSTEMIHK-----QR 274 (333)
Q Consensus 241 ------~~~l~lif~~~~~~~~~l~~~L~-----------------------------------g~~~~~lh~-----~r 274 (333)
....++|||++++.|+.++..|. ...+..+|+ +|
T Consensus 231 ~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 231 VYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 01125899999999988775552 123567777 34
Q ss_pred HH-HhhhCCCCcccccccc--------CCcccccc---------------cccEEEEccCC
Q psy18032 275 QS-VRKWDPAKKKYVQVTD--------DTIPLVLE---------------GRDVVAMARTG 311 (333)
Q Consensus 275 ~~-l~~f~~g~~~vLvaTd--------~~i~~vi~---------------~~~~~~~grtG 311 (333)
+. .+.|++|+++|||||+ ++...||. ..|.|++||+|
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAG 371 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAG 371 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccC
Confidence 44 4999999999999998 34444442 24688999999
No 44
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=7.2e-33 Score=273.21 Aligned_cols=257 Identities=19% Similarity=0.205 Sum_probs=185.3
Q ss_pred cCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 42 FGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 42 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
+++.+...+.|++ +||+.|+|+|.++|+.+++|+|+++++|||+|||+||++|++.. ++.+||++|+++|+
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------~g~tlVisPl~sL~ 78 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------DGLTLVVSPLISLM 78 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------CCCEEEEecHHHHH
Confidence 3455556666766 69999999999999999999999999999999999999999864 34799999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEECCcchHHHHHH---hh-CCCCEEEECchHHHHHHHhccccccCchhhHH---------
Q psy18032 121 LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LH-ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK--------- 187 (333)
Q Consensus 121 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~-~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~--------- 187 (333)
.|+++.++. .++.+..+.++.+..+.... +. ...+++++||+++........+...++.++|+
T Consensus 79 ~dqv~~l~~----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 999999987 36777777777766554332 22 34899999999987432222334445666663
Q ss_pred ---HHHHHh------hccccceeeeecCCChHHHHHh-----h-hcCCcEEEeCC--CceEEEEEecchhhhh-------
Q psy18032 188 ---FVKELG------KFTKLQSTCLLGGDSMDNQFAR-----L-HASPDIVVATP--GRFLHIVVEMELKLSS------- 243 (333)
Q Consensus 188 ---~i~~l~------~~~~~~~~~l~~sAT~~~~v~~-----l-~~~~~i~~~t~--~~i~~~~~~~~~k~~~------- 243 (333)
|.+++. ... ...+++++|||.++.... + ...+.+..... .++...+.....+...
T Consensus 155 G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~ 233 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQE 233 (607)
T ss_pred cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHHh
Confidence 222221 111 256789999999865432 1 13444444332 3344333332222211
Q ss_pred ----HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc---
Q psy18032 244 ----IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE--- 300 (333)
Q Consensus 244 ----l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~--- 300 (333)
..+|||+++++|+.++..|. |+++..+|+ +++.+++|++|+++|||||+ +++..||+
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~ 313 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC
Confidence 24899999999999999997 899999998 33456999999999999998 44445553
Q ss_pred ----cccEEEEccCC
Q psy18032 301 ----GRDVVAMARTG 311 (333)
Q Consensus 301 ----~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 314 P~s~~~y~Qr~GRaG 328 (607)
T PRK11057 314 PRNIESYYQETGRAG 328 (607)
T ss_pred CCCHHHHHHHhhhcc
Confidence 34999999999
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.4e-32 Score=269.79 Aligned_cols=252 Identities=19% Similarity=0.215 Sum_probs=184.8
Q ss_pred HHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 50 KGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 50 ~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
+.|++ +||+.|+|+|.++|+++++|+|+++++|||+|||+||++|++.. +..++|++|+++|+.|+++.++
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------~g~~lVisPl~sL~~dq~~~l~ 74 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------KGLTVVISPLISLMKDQVDQLR 74 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHH
Confidence 45555 79999999999999999999999999999999999999999853 4479999999999999999998
Q ss_pred HHhccCCceEEEEECCcchHHHHHHh----hCCCCEEEECchHHHHHHHhccccccCchhhHH------------HHHHH
Q psy18032 129 ELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------------FVKEL 192 (333)
Q Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------------~i~~l 192 (333)
. .|+.+..+.++.+..+....+ ....+|+++||+++........+...++.++|+ |.+++
T Consensus 75 ~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 75 A----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred H----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 7 367888888888766554332 235899999999997544444455667777774 22222
Q ss_pred hhc------cccceeeeecCCChHHHHHh----hh--cCCcEEEeCC--CceEEEEEecchhhhh-----------HHHH
Q psy18032 193 GKF------TKLQSTCLLGGDSMDNQFAR----LH--ASPDIVVATP--GRFLHIVVEMELKLSS-----------IQLS 247 (333)
Q Consensus 193 ~~~------~~~~~~~l~~sAT~~~~v~~----l~--~~~~i~~~t~--~~i~~~~~~~~~k~~~-----------l~li 247 (333)
.++ .+ ..+++++|||.+..+.. .. ..+.+++.+. .++...+.....+... ..+|
T Consensus 151 ~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~II 229 (591)
T TIGR01389 151 QRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGII 229 (591)
T ss_pred HHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEE
Confidence 222 22 34489999998766543 21 2344444433 3344444333222221 2479
Q ss_pred hhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc-------cccE
Q psy18032 248 LTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDV 304 (333)
Q Consensus 248 f~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~ 304 (333)
||++++.++.+++.|. |+++..+|| .| +.+++|.+|+++|||||+ +++..|+. ..|+
T Consensus 230 f~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~ 309 (591)
T TIGR01389 230 YASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYY 309 (591)
T ss_pred EECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHh
Confidence 9999999999999996 899999998 34 445999999999999998 34445553 3499
Q ss_pred EEEccCC-Cch
Q psy18032 305 VAMARTG-SGK 314 (333)
Q Consensus 305 ~~~grtG-~g~ 314 (333)
|++||+| .|+
T Consensus 310 Q~~GRaGR~G~ 320 (591)
T TIGR01389 310 QEAGRAGRDGL 320 (591)
T ss_pred hhhccccCCCC
Confidence 9999999 453
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.98 E-value=6.1e-32 Score=273.68 Aligned_cols=257 Identities=17% Similarity=0.154 Sum_probs=190.8
Q ss_pred CCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 43 GLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 43 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
+.+..+.+.+.+ ++|+ ||++|.++|+.++++ +|.+++||||||||++|++|++..+.. +++++|++|
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----g~qvlvLvP 508 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----GKQVAVLVP 508 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----CCeEEEEeC
Confidence 445566666655 6996 999999999999986 799999999999999999999998876 679999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH---HhhC-CCCEEEECchHHHHHHHhccccccCchhhHHHHHH
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA---RLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKE 191 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~ 191 (333)
|++||.|+++.++++....++++..+.|+.+..++.+ .+.+ .++|+|+||.. + .+.+.+++++++|+ |+
T Consensus 509 T~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVI--DE 581 (926)
T TIGR00580 509 TTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLII--DE 581 (926)
T ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEe--ec
Confidence 9999999999999988878899999988877555433 3344 49999999942 2 35578899999995 33
Q ss_pred Hhh----------ccccceeeeecCCChHHHHHhhh----cCCcEEEeCC-Cc--eEEEEEecchhh-----------hh
Q psy18032 192 LGK----------FTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATP-GR--FLHIVVEMELKL-----------SS 243 (333)
Q Consensus 192 l~~----------~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~t~-~~--i~~~~~~~~~k~-----------~~ 243 (333)
..+ ..+...+++++|||..+....+. .++.++...| ++ +..++.....+. ..
T Consensus 582 ahrfgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~ 661 (926)
T TIGR00580 582 EQRFGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGG 661 (926)
T ss_pred ccccchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCC
Confidence 221 23456899999999755443322 2333333222 22 333333221110 11
Q ss_pred HHHHhhcchhhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-----
Q psy18032 244 IQLSLTDFKQDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE----- 300 (333)
Q Consensus 244 l~lif~~~~~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~----- 300 (333)
.+++||++++.++.+++.|. ++++..+|| +.+.+++|++|+++|||||| ++++.|+.
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~ 741 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK 741 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC
Confidence 24789999999999998886 678999999 33567999999999999999 45555562
Q ss_pred ---cccEEEEccCCC
Q psy18032 301 ---GRDVVAMARTGS 312 (333)
Q Consensus 301 ---~~~~~~~grtG~ 312 (333)
+.++||+||+|.
T Consensus 742 ~gls~l~Qr~GRvGR 756 (926)
T TIGR00580 742 FGLAQLYQLRGRVGR 756 (926)
T ss_pred CCHHHHHHHhcCCCC
Confidence 458899999993
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=1.6e-31 Score=275.99 Aligned_cols=254 Identities=16% Similarity=0.122 Sum_probs=189.8
Q ss_pred HHHHHHHHhCCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 46 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
++..+....++|+ ||++|.++|+.++++ +|++++||||||||.+|+.+++..+.. +++++|++||++|
T Consensus 588 ~~~~~~~~~~~~~-~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----g~qvlvLvPT~eL 661 (1147)
T PRK10689 588 EQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----HKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHH
Confidence 4445556678995 999999999999997 899999999999999999998877654 7899999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCchhhHH--------
Q psy18032 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------- 187 (333)
Q Consensus 120 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------- 187 (333)
|.|+++.+++.....++++..+.|+.+..++...+. .+++|+|+||+.+ ...+.+++++++|+
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrfG~ 736 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRFGV 736 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhcch
Confidence 999999999876667888888998888777655443 3589999999643 24567788999885
Q ss_pred -HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEeCCC-c--eEEEEEecch---hhh--------hHHHHh
Q psy18032 188 -FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPG-R--FLHIVVEMEL---KLS--------SIQLSL 248 (333)
Q Consensus 188 -~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~t~~-~--i~~~~~~~~~---k~~--------~l~lif 248 (333)
+...+ +.++...|++++|||..+....+. .++.++...|. + +.+++..... +.. ..+++|
T Consensus 737 ~~~e~l-k~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf 815 (1147)
T PRK10689 737 RHKERI-KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYL 815 (1147)
T ss_pred hHHHHH-HhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEE
Confidence 11112 223567899999999765544432 34444433332 2 3333322111 111 125789
Q ss_pred hcchhhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc--------CCccccc-----c---cc
Q psy18032 249 TDFKQDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVL-----E---GR 302 (333)
Q Consensus 249 ~~~~~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi-----~---~~ 302 (333)
||+++.++.+++.|. +.++..+|| +.+.+++|++|+++|||||| +++..|+ + +.
T Consensus 816 ~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq 895 (1147)
T PRK10689 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 (1147)
T ss_pred ECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHH
Confidence 999999999998875 678899998 23567999999999999999 5667777 2 55
Q ss_pred cEEEEccCC
Q psy18032 303 DVVAMARTG 311 (333)
Q Consensus 303 ~~~~~grtG 311 (333)
|+||+||+|
T Consensus 896 ~~Qr~GRvG 904 (1147)
T PRK10689 896 LHQLRGRVG 904 (1147)
T ss_pred HHHHhhccC
Confidence 899999999
No 48
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=1.8e-31 Score=263.84 Aligned_cols=257 Identities=16% Similarity=0.153 Sum_probs=183.7
Q ss_pred HHHHh-CCCCCCcHHHHhHHHHHhcCC-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE-EcccHHHHHHHHHH
Q psy18032 50 KGVLK-RGYKIPTPIQRKTIPLVLEGR-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI-LSPTRELALQTFKF 126 (333)
Q Consensus 50 ~~l~~-~g~~~~~~~Q~~~i~~i~~g~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li-l~Pt~~L~~q~~~~ 126 (333)
+.+++ .||+ |+|+|.+++|.+++|+ ++++++|||||||+++.++.+.. .. ....++.|| ++|||+|+.|+++.
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~--~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI--GAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc--cccccceEEEeCchHHHHHHHHHH
Confidence 34444 4999 9999999999999998 58889999999999766555532 22 233566666 66999999999999
Q ss_pred HHHHhccC-----------------------CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcccc-----
Q psy18032 127 VKELGKFT-----------------------KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK----- 178 (333)
Q Consensus 127 ~~~~~~~~-----------------------~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~----- 178 (333)
++++++.+ ++++..++||.+.+.+...+..+++|||+|+ +++.++.+.
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~ 157 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGC 157 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccccc
Confidence 99998755 4889999999999999999999999999995 555555542
Q ss_pred -----------ccCchhhHH--------HHHHHhhccc-----c---ceeeeecCCChHHHHHhh----hcCCc-EEEe-
Q psy18032 179 -----------LSSIQYTFK--------FVKELGKFTK-----L---QSTCLLGGDSMDNQFARL----HASPD-IVVA- 225 (333)
Q Consensus 179 -----------~~~l~~lV~--------~i~~l~~~~~-----~---~~~~l~~sAT~~~~v~~l----~~~~~-i~~~- 225 (333)
+++++++|+ |.+++.+++. . ..|+++||||++..+..+ ..++. +.+.
T Consensus 158 ~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~ 237 (844)
T TIGR02621 158 GFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK 237 (844)
T ss_pred ccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc
Confidence 678888886 5555555443 1 269999999998655433 22332 2221
Q ss_pred ---CCCceEEEEEec-chhhh--------------hHHHHhhcchhhHHHHHHHhcCCCcccccc-----chH------H
Q psy18032 226 ---TPGRFLHIVVEM-ELKLS--------------SIQLSLTDFKQDTSRIALDLVGDSTEMIHK-----QRQ------S 276 (333)
Q Consensus 226 ---t~~~i~~~~~~~-~~k~~--------------~l~lif~~~~~~~~~l~~~L~g~~~~~lh~-----~r~------~ 276 (333)
+..++.+++... +.|.. ...+|||||++.|+.+++.|.......+|| +|+ .
T Consensus 238 ~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 238 KRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKFELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred ccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCCeEeeCCCCHHHHhhHHHHHH
Confidence 223445544322 11211 125899999999999999998444489998 232 3
Q ss_pred HhhhCC----CC-------cccccccc-------CCcccccc-----cccEEEEccCC-Cch
Q psy18032 277 VRKWDP----AK-------KKYVQVTD-------DTIPLVLE-----GRDVVAMARTG-SGK 314 (333)
Q Consensus 277 l~~f~~----g~-------~~vLvaTd-------~~i~~vi~-----~~~~~~~grtG-~g~ 314 (333)
+++|++ |+ .+|||||| .+.+.+|+ ..|+||+||+| .|+
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~aP~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLAPFESMQQRFGRVNRFGE 379 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCcceEEECCCCHHHHHHHhcccCCCCC
Confidence 688977 54 78999998 22244443 45999999999 454
No 49
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=1.5e-30 Score=269.21 Aligned_cols=257 Identities=19% Similarity=0.196 Sum_probs=185.4
Q ss_pred HHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 47 EVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 47 ~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
++.+.+++ .|+ +||++|..++|.++.|+|++++||||||||+ |.++++..+.. ++++++||+||++|+.|+++
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----~g~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----KGKKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeccHHHHHHHHH
Confidence 34445554 488 6999999999999999999999999999996 55666555543 37899999999999999999
Q ss_pred HHHHHhccCCceEEEEECCcch-----HHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH-HH---------
Q psy18032 126 FVKELGKFTKLQSTCLLGGDSM-----DNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK-FV--------- 189 (333)
Q Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~i--------- 189 (333)
.++.++...++.+..+.|+.+. .++...+.+ .++|+|+||++|.+++. .+..+.++++|+ ..
T Consensus 142 ~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~ 219 (1176)
T PRK09401 142 KLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKN 219 (1176)
T ss_pred HHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccc
Confidence 9999999889888888877542 223334443 59999999999998876 345555777764 11
Q ss_pred ------------HHHh---hcccc------------------------ceeeeecCCChHHH-HHh-hhcCC-cEEEeC-
Q psy18032 190 ------------KELG---KFTKL------------------------QSTCLLGGDSMDNQ-FAR-LHASP-DIVVAT- 226 (333)
Q Consensus 190 ------------~~l~---~~~~~------------------------~~~~l~~sAT~~~~-v~~-l~~~~-~i~~~t- 226 (333)
+++. ..++. ..|+++||||+++. +.. +.+.+ .+.++.
T Consensus 220 id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~ 299 (1176)
T PRK09401 220 IDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSP 299 (1176)
T ss_pred hhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCc
Confidence 1111 11111 57999999999753 432 22222 333332
Q ss_pred ---CCceEEEEEecchhhhhH----------HHHhhcchhh---HHHHHHHhc--CCCccccccc-hHHHhhhCCCCccc
Q psy18032 227 ---PGRFLHIVVEMELKLSSI----------QLSLTDFKQD---TSRIALDLV--GDSTEMIHKQ-RQSVRKWDPAKKKY 287 (333)
Q Consensus 227 ---~~~i~~~~~~~~~k~~~l----------~lif~~~~~~---~~~l~~~L~--g~~~~~lh~~-r~~l~~f~~g~~~v 287 (333)
..++.|.+...+.+...+ .+|||+++++ |+++++.|. |+++..+||. ++.+++|++|+++|
T Consensus 300 ~~~~rnI~~~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l~~~l~~F~~G~~~V 379 (1176)
T PRK09401 300 VFYLRNIVDSYIVDEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGFERKFEKFEEGEVDV 379 (1176)
T ss_pred ccccCCceEEEEEcccHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcHHHHHHHHHCCCCCE
Confidence 346777776543222222 5899999888 999999997 9999999995 45679999999999
Q ss_pred cccc----c-----CCcccc----cc-------------cccEEEEccCC
Q psy18032 288 VQVT----D-----DTIPLV----LE-------------GRDVVAMARTG 311 (333)
Q Consensus 288 LvaT----d-----~~i~~v----i~-------------~~~~~~~grtG 311 (333)
|||| | -|+|.+ |+ ..+.||+||+=
T Consensus 380 LVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 380 LVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred EEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 9995 5 455553 43 44667788773
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=1.6e-30 Score=260.45 Aligned_cols=244 Identities=15% Similarity=0.197 Sum_probs=179.9
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
+.|++++|++++++.+.+.||+ ++++|.++++.+.+|+|++++||||||||+++.++++..+.. +.++|+++|+
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----~~k~v~i~P~ 74 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----GLKSIYIVPL 74 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----CCcEEEEech
Confidence 5799999999999999999998 999999999999999999999999999999999999998765 5689999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhh--
Q psy18032 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGK-- 194 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~-- 194 (333)
++||.|+++.++++. ..|+++...+|+...... ..+.++|+|+||+++..++.+....+.+++++|+ |+.+.
T Consensus 75 raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvVi--DEaH~l~ 148 (674)
T PRK01172 75 RSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVA--DEIHIIG 148 (674)
T ss_pred HHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEE--ecchhcc
Confidence 999999999999864 468888888887654332 2246899999999999888876666788888884 22221
Q ss_pred ----------------ccccceeeeecCCChHH--HHHhhhcCCcEEEe-CCCceE-------EEEEecc----------
Q psy18032 195 ----------------FTKLQSTCLLGGDSMDN--QFARLHASPDIVVA-TPGRFL-------HIVVEME---------- 238 (333)
Q Consensus 195 ----------------~~~~~~~~l~~sAT~~~--~v~~l~~~~~i~~~-t~~~i~-------~~~~~~~---------- 238 (333)
..+...|++++|||+++ .+..+.....+... .|-.+. +.+....
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~ 228 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSL 228 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccHHHH
Confidence 12346789999999853 34444322111100 010010 0000000
Q ss_pred ----hhhhhHHHHhhcchhhHHHHHHHhcC---------------------------CCcccccc-----chHH-HhhhC
Q psy18032 239 ----LKLSSIQLSLTDFKQDTSRIALDLVG---------------------------DSTEMIHK-----QRQS-VRKWD 281 (333)
Q Consensus 239 ----~k~~~l~lif~~~~~~~~~l~~~L~g---------------------------~~~~~lh~-----~r~~-l~~f~ 281 (333)
.+...-.+|||+++++|+.++..|.. ..+..+|+ +|+. .+.|+
T Consensus 229 i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 229 IKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred HHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 01112258999999999999977741 12455676 3444 48899
Q ss_pred CCCcccccccc
Q psy18032 282 PAKKKYVQVTD 292 (333)
Q Consensus 282 ~g~~~vLvaTd 292 (333)
+|.++|||||+
T Consensus 309 ~g~i~VLvaT~ 319 (674)
T PRK01172 309 NRYIKVIVATP 319 (674)
T ss_pred cCCCeEEEecc
Confidence 99999999998
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=6.2e-30 Score=255.06 Aligned_cols=253 Identities=17% Similarity=0.225 Sum_probs=179.6
Q ss_pred HHHHH-HHhCCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 47 EVLKG-VLKRGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 47 ~l~~~-l~~~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
.+.+. ...++|+ ||++|.++++.+.++ .|++++||||||||++|++|++..+.. +.+++|++||++|
T Consensus 249 ~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----g~q~lilaPT~~L 322 (681)
T PRK10917 249 ELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----GYQAALMAPTEIL 322 (681)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----CCeEEEEeccHHH
Confidence 44444 4567996 999999999999997 489999999999999999999998765 7899999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCcchHHHH---HHhhC-CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhc
Q psy18032 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKF 195 (333)
Q Consensus 120 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~ 195 (333)
|.|+++.+++++...++++..++|+.+..+.. ..+.+ .++|+|+||+++.+ .+.+++++++|+ |+.+++
T Consensus 323 A~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVI--DE~Hrf 395 (681)
T PRK10917 323 AEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVII--DEQHRF 395 (681)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEE--echhhh
Confidence 99999999999988899999999999865443 33444 49999999987743 456788888884 332221
Q ss_pred ----------cccceeeeecCCChHHHHHhhh--cCCcEEE--eC-CCc--eEEEEEecchhh---h---------hHHH
Q psy18032 196 ----------TKLQSTCLLGGDSMDNQFARLH--ASPDIVV--AT-PGR--FLHIVVEMELKL---S---------SIQL 246 (333)
Q Consensus 196 ----------~~~~~~~l~~sAT~~~~v~~l~--~~~~i~~--~t-~~~--i~~~~~~~~~k~---~---------~l~l 246 (333)
.+...+++++|||..+....+. ...++.. .. +++ +...+....... . .-++
T Consensus 396 g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~ 475 (681)
T PRK10917 396 GVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAY 475 (681)
T ss_pred hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCCcEE
Confidence 1335789999999754432222 1222221 11 222 333333322111 1 1247
Q ss_pred Hhhcch--------hhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc
Q psy18032 247 SLTDFK--------QDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE 300 (333)
Q Consensus 247 if~~~~--------~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~ 300 (333)
+||+.. ..++.+++.|. ++++..+|| +++.+++|++|+++|||||| +++..|+.
T Consensus 476 v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi 555 (681)
T PRK10917 476 VVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI 555 (681)
T ss_pred EEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE
Confidence 788743 34455565554 578999999 34567999999999999999 45555553
Q ss_pred --------cccEEEEccCCC
Q psy18032 301 --------GRDVVAMARTGS 312 (333)
Q Consensus 301 --------~~~~~~~grtG~ 312 (333)
+.+.|++||+|.
T Consensus 556 ~~~~r~gls~lhQ~~GRvGR 575 (681)
T PRK10917 556 ENAERFGLAQLHQLRGRVGR 575 (681)
T ss_pred eCCCCCCHHHHHHHhhcccC
Confidence 334568999993
No 52
>KOG0349|consensus
Probab=99.97 E-value=1.7e-31 Score=239.42 Aligned_cols=226 Identities=18% Similarity=0.260 Sum_probs=163.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhc---cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCch
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGK---FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~ 183 (333)
.|+++|+-|++||+.|.++.+++|-. .+.++..++.||....+|...+.++.||+|+||+|+++++..+.+.+..++
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 57999999999999999997777644 345777789999999999999999999999999999999999999999999
Q ss_pred hhHH-------------HHHHHhhccc------cceeeeecCCChHH-HHH----hhh--------cC-------C-cEE
Q psy18032 184 YTFK-------------FVKELGKFTK------LQSTCLLGGDSMDN-QFA----RLH--------AS-------P-DIV 223 (333)
Q Consensus 184 ~lV~-------------~i~~l~~~~~------~~~~~l~~sAT~~~-~v~----~l~--------~~-------~-~i~ 223 (333)
|+|+ +|..+..-+| .+.|....|||+.. ++. +++ ++ . +++
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9996 4444433222 57888999998741 121 221 00 0 111
Q ss_pred E-eCC--C----ceEEEEEec---------------c---hhhh----------------hHHHHhhcchhhHHHHHHHh
Q psy18032 224 V-ATP--G----RFLHIVVEM---------------E---LKLS----------------SIQLSLTDFKQDTSRIALDL 262 (333)
Q Consensus 224 ~-~t~--~----~i~~~~~~~---------------~---~k~~----------------~l~lif~~~~~~~~~l~~~L 262 (333)
. ..| + ++.+++... + ...+ .-+++||.|+.+|+.+-+++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 1 011 0 111111100 0 0000 01589999999999999988
Q ss_pred c-----CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCCCchhh
Q psy18032 263 V-----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTGSGKTA 316 (333)
Q Consensus 263 ~-----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG~g~~~ 316 (333)
. .+++..+|| +++.++.|+.+.++.|+||| ..+|.+|| ..|+|||||.|....+
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraerm 605 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERM 605 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhc
Confidence 5 478999998 34678999999999999999 46777886 5599999999966666
Q ss_pred HHHhhhhhhccCCCCC
Q psy18032 317 CFLFYFFFRFDRGNFN 332 (333)
Q Consensus 317 ~~~lp~~~~~~~~~~~ 332 (333)
...++++--.-+++|+
T Consensus 606 glaislvat~~ekvwy 621 (725)
T KOG0349|consen 606 GLAISLVATVPEKVWY 621 (725)
T ss_pred ceeEEEeeccchheee
Confidence 6666666555666664
No 53
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.7e-30 Score=247.42 Aligned_cols=260 Identities=20% Similarity=0.244 Sum_probs=196.8
Q ss_pred HHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 48 VLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 48 l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
+...|++ +||..+++-|.++|..+++|+|+++..|||+|||+||++|++-. .+.+|||+|..+|+.+|.+.
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--------~G~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--------EGLTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--------CCCEEEECchHHHHHHHHHH
Confidence 3455766 59999999999999999999999999999999999999999876 34799999999999999999
Q ss_pred HHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCchhhHH------------HHH
Q psy18032 127 VKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK------------FVK 190 (333)
Q Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------------~i~ 190 (333)
++. .|+.+..+.+..+.+++...+. . ..++|+.+||++..-.....+.--.+..+|+ |.+
T Consensus 77 l~~----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 77 LEA----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHH----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 998 5788988888877776654443 2 3899999999998554444444445555554 555
Q ss_pred HHhhccc-----cceeeeecCCChHHHHHh-----hh-cCCcEEEeCCCc--eEEEEEecc---hhh----------hhH
Q psy18032 191 ELGKFTK-----LQSTCLLGGDSMDNQFAR-----LH-ASPDIVVATPGR--FLHIVVEME---LKL----------SSI 244 (333)
Q Consensus 191 ~l~~~~~-----~~~~~l~~sAT~~~~v~~-----l~-~~~~i~~~t~~~--i~~~~~~~~---~k~----------~~l 244 (333)
++.++.. .+..+++++||.++.+.. |. ..+.+++.+..| +...+.... .+. ...
T Consensus 153 ~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~ 232 (590)
T COG0514 153 DYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKS 232 (590)
T ss_pred hHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCC
Confidence 5554321 167889999998876544 22 456677776554 333333211 111 112
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc-----chHHH-hhhCCCCcccccccc----------------CCcccccc
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQSV-RKWDPAKKKYVQVTD----------------DTIPLVLE 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~~l-~~f~~g~~~vLvaTd----------------~~i~~vi~ 300 (333)
.+|||.|++.+|.++.+|. |+++..||+ .|+.+ ++|..++++|+|||. .++|..++
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 5899999999999999997 899999998 45555 899999999999997 56777777
Q ss_pred cccEEEEccCC-Cch-hhHHHh
Q psy18032 301 GRDVVAMARTG-SGK-TACFLF 320 (333)
Q Consensus 301 ~~~~~~~grtG-~g~-~~~~~l 320 (333)
+ |||++||+| .|+ +.+++|
T Consensus 313 s-YyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 313 S-YYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred H-HHHHHhhccCCCCcceEEEe
Confidence 8 999999999 454 333333
No 54
>PRK14701 reverse gyrase; Provisional
Probab=99.96 E-value=4.6e-29 Score=263.43 Aligned_cols=239 Identities=17% Similarity=0.163 Sum_probs=173.0
Q ss_pred HHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 46 FEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 46 ~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
+++.+.+++ .|| .|+++|.+++|.+++|+|++++||||||||++++++++.... ++.++|||+||++|+.|++
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-----~g~~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-----KGKKCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-----cCCeEEEEECHHHHHHHHH
Confidence 445667776 799 599999999999999999999999999999977776665432 3679999999999999999
Q ss_pred HHHHHHhccC--CceEEEEECCcchHHHHH---HhhC-CCCEEEECchHHHHHHHhccccccCchhhHH-----------
Q psy18032 125 KFVKELGKFT--KLQSTCLLGGDSMDNQFA---RLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------- 187 (333)
Q Consensus 125 ~~~~~~~~~~--~~~~~~~~g~~~~~~~~~---~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------- 187 (333)
+.++.++... ++.+..++|+.+..++.+ .+.+ .++|||+||++|.+.+... . ..+++++|+
T Consensus 140 ~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 140 EKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecccccc
Confidence 9999998765 467778889988776543 3444 4999999999998766532 1 134444443
Q ss_pred ----------HHHHHhh----c-------------------------ccccee-eeecCCChHH--HHHhhhcCC-cEEE
Q psy18032 188 ----------FVKELGK----F-------------------------TKLQST-CLLGGDSMDN--QFARLHASP-DIVV 224 (333)
Q Consensus 188 ----------~i~~l~~----~-------------------------~~~~~~-~l~~sAT~~~--~v~~l~~~~-~i~~ 224 (333)
|.+++.. + ++...| ++++|||++. .+..+.+.+ .+.+
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v 297 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEV 297 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEe
Confidence 2222221 1 123344 6789999973 444454444 3333
Q ss_pred eC----CCceEEEEEecch--hhh--h-------HHHHhhcchhh---HHHHHHHhc--CCCccccccch-HHHhhhCCC
Q psy18032 225 AT----PGRFLHIVVEMEL--KLS--S-------IQLSLTDFKQD---TSRIALDLV--GDSTEMIHKQR-QSVRKWDPA 283 (333)
Q Consensus 225 ~t----~~~i~~~~~~~~~--k~~--~-------l~lif~~~~~~---~~~l~~~L~--g~~~~~lh~~r-~~l~~f~~g 283 (333)
+. ..++.|.+...+. +.. . -.+|||++++. |+++++.|. |+++..+|+.| +.+++|++|
T Consensus 298 ~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~R~~~l~~F~~G 377 (1638)
T PRK14701 298 GSGRSALRNIVDVYLNPEKIIKEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAKNKKGFDLFEEG 377 (1638)
T ss_pred cCCCCCCCCcEEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecchHHHHHHHHHcC
Confidence 32 2357777664321 111 1 14899999886 589999997 99999999954 677999999
Q ss_pred Ccccccccc
Q psy18032 284 KKKYVQVTD 292 (333)
Q Consensus 284 ~~~vLvaTd 292 (333)
+++||||||
T Consensus 378 ~~~VLVaT~ 386 (1638)
T PRK14701 378 EIDYLIGVA 386 (1638)
T ss_pred CCCEEEEec
Confidence 999999995
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=2e-29 Score=249.80 Aligned_cols=254 Identities=14% Similarity=0.178 Sum_probs=179.9
Q ss_pred HHHHHHHHhCCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 46 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
+.+.+.++.++|+ ||+.|.++++.++++ .+.+++||||||||++|++|++..+.. +.+++|++||++|
T Consensus 223 ~~~~~~~~~lpf~-lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----g~qvlilaPT~~L 296 (630)
T TIGR00643 223 ELLTKFLASLPFK-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----GYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----CCcEEEECCHHHH
Confidence 3455667788995 999999999999987 368999999999999999999998765 7799999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCcchHHHH---HHhhC-CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhh-
Q psy18032 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGK- 194 (333)
Q Consensus 120 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~- 194 (333)
|.|+++.+++++...++++..++|+.+..++. ..+.+ .++|+|+||+++.+ .+.+++++++|+ |+.++
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVI--DEaH~f 369 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVII--DEQHRF 369 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEE--echhhc
Confidence 99999999999888899999999998766543 33333 48999999987753 356788898884 33222
Q ss_pred ----------ccc--cceeeeecCCChHHHHHhhh--cCCcE--EEe-CCC--ceEEEEEecchhh------------hh
Q psy18032 195 ----------FTK--LQSTCLLGGDSMDNQFARLH--ASPDI--VVA-TPG--RFLHIVVEMELKL------------SS 243 (333)
Q Consensus 195 ----------~~~--~~~~~l~~sAT~~~~v~~l~--~~~~i--~~~-t~~--~i~~~~~~~~~k~------------~~ 243 (333)
... ..++++++|||..+....+. ...++ +.. .++ .+...+...+.+. ..
T Consensus 370 g~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~ 449 (630)
T TIGR00643 370 GVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGR 449 (630)
T ss_pred cHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCC
Confidence 222 25789999999654332221 11111 111 122 2333333222111 11
Q ss_pred HHHHhhcch--------hhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc--------CCccc
Q psy18032 244 IQLSLTDFK--------QDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPL 297 (333)
Q Consensus 244 l~lif~~~~--------~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~ 297 (333)
..++||+.. +.++.+++.|. ++++..+|| +++.+++|++|+.+|||||| +++..
T Consensus 450 q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~ 529 (630)
T TIGR00643 450 QAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATV 529 (630)
T ss_pred cEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcE
Confidence 246777654 44556665553 778999998 34567999999999999999 44555
Q ss_pred ccc--------cccEEEEccCCC
Q psy18032 298 VLE--------GRDVVAMARTGS 312 (333)
Q Consensus 298 vi~--------~~~~~~~grtG~ 312 (333)
|+. +.+.|++||+|.
T Consensus 530 VIi~~~~r~gls~lhQ~~GRvGR 552 (630)
T TIGR00643 530 MVIEDAERFGLSQLHQLRGRVGR 552 (630)
T ss_pred EEEeCCCcCCHHHHHHHhhhccc
Confidence 553 334569999994
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=9.2e-30 Score=264.71 Aligned_cols=243 Identities=17% Similarity=0.227 Sum_probs=173.4
Q ss_pred EECCCCcHHHHHHHHHHHHHhhhhc--------ccCCceEEEEcccHHHHHHHHHHHHHHh------------ccCCceE
Q psy18032 79 AMARTGSGKTACFLIPMLEKLKTHA--------ATSGVRALILSPTRELALQTFKFVKELG------------KFTKLQS 138 (333)
Q Consensus 79 ~~a~TGsGKT~~~~l~~l~~l~~~~--------~~~~~~~lil~Pt~~L~~q~~~~~~~~~------------~~~~~~~ 138 (333)
++||||||||+||++|+++++.... ..++.++|||+|+++|++|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987642 1246899999999999999999987521 1357899
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc-ccccCchhhHH-----------------HHHHHhhccccce
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQYTFK-----------------FVKELGKFTKLQS 200 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~-~~~~~l~~lV~-----------------~i~~l~~~~~~~~ 200 (333)
...+|+.+.+++.+.+.+.++|||+|||+|..++.++. ..+++++++|+ .+..+..+.+...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999988877778889999999999998876543 46899999995 2333444556678
Q ss_pred eeeecCCChHH--HHHhhhc--CCcEEEeCCC----ceEEEEEecc-------------------h--------------
Q psy18032 201 TCLLGGDSMDN--QFARLHA--SPDIVVATPG----RFLHIVVEME-------------------L-------------- 239 (333)
Q Consensus 201 ~~l~~sAT~~~--~v~~l~~--~~~i~~~t~~----~i~~~~~~~~-------------------~-------------- 239 (333)
|.+++|||+.+ ++.++.. .+..++..+. .+...+...+ .
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~ 240 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDE 240 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHH
Confidence 99999999975 4555442 2333332221 1211111000 0
Q ss_pred -hhhhHHHHhhcchhhHHHHHHHhcCC-----------------------------------Ccccccc-----ch-HHH
Q psy18032 240 -KLSSIQLSLTDFKQDTSRIALDLVGD-----------------------------------STEMIHK-----QR-QSV 277 (333)
Q Consensus 240 -k~~~l~lif~~~~~~~~~l~~~L~g~-----------------------------------~~~~lh~-----~r-~~l 277 (333)
......+||||+++.|+.++..|... .+..+|| +| ...
T Consensus 241 i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE 320 (1490)
T PRK09751 241 VLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITE 320 (1490)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHH
Confidence 00112489999999999999877521 1345677 34 445
Q ss_pred hhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC---CchhhHHHhh
Q psy18032 278 RKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG---SGKTACFLFY 321 (333)
Q Consensus 278 ~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG---~g~~~~~~lp 321 (333)
++|++|++++||||+ .+++.||+ ..|+||+||+| .|...++++|
T Consensus 321 ~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 321 QALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 999999999999998 56677776 66999999999 3333444444
No 57
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=1.1e-27 Score=205.58 Aligned_cols=179 Identities=44% Similarity=0.720 Sum_probs=156.3
Q ss_pred ccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 39 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
|+++++++.+.+.|.+.|+..|+++|.++++.+.+|+|+++++|||+|||++|++|+++.+......++++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 88999999999999999999999999999999999999999999999999999999999988753245789999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----------
Q psy18032 119 LALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------- 187 (333)
Q Consensus 119 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------- 187 (333)
|+.|+.+.++.+....++.+..+.|+....+....+.++++|+|+||+++.+++.+....+++++++|+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 999999999999888889999999999887777777678999999999999999988888888888885
Q ss_pred --HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 --FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 --~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+...++...+.+++|||+++.+..+.
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHH
Confidence 122223334457899999999998776653
No 58
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.96 E-value=8e-28 Score=249.36 Aligned_cols=239 Identities=19% Similarity=0.164 Sum_probs=170.8
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 45 GFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 45 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
..++.+.+.+.....|+++|..++|.++.|+|++++||||||||+ |.+|++..+.. ++++++||+||++||.|++
T Consensus 64 ~~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 64 LKEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeCHHHHHHHHH
Confidence 344566666644446999999999999999999999999999997 77777766544 3689999999999999999
Q ss_pred HHHHHHhccCCceEE---EEECCcchHHHH---HHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH----------
Q psy18032 125 KFVKELGKFTKLQST---CLLGGDSMDNQF---ARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------- 187 (333)
Q Consensus 125 ~~~~~~~~~~~~~~~---~~~g~~~~~~~~---~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------- 187 (333)
+.++.++...++.+. .++|+.+..++. ..+.+ +++|+|+||++|.+.+..-. . +++++|+
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhcc
Confidence 999999888776654 457887766543 33444 59999999999998776521 1 5556553
Q ss_pred -----------HHHH-Hhh-------------------------cccccee--eeecCCC-hHHHHHh-hhcCC-cEEEe
Q psy18032 188 -----------FVKE-LGK-------------------------FTKLQST--CLLGGDS-MDNQFAR-LHASP-DIVVA 225 (333)
Q Consensus 188 -----------~i~~-l~~-------------------------~~~~~~~--~l~~sAT-~~~~v~~-l~~~~-~i~~~ 225 (333)
|.++ +.. ..+...| +++|||| .+..+.. +.+.. .+.++
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~ 295 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVG 295 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEec
Confidence 1111 111 1123333 5679999 5554432 22222 33343
Q ss_pred C----CCceEEEEEecchhhhhH----------HHHhhcch---hhHHHHHHHhc--CCCccccccc--hHHHhhhCCCC
Q psy18032 226 T----PGRFLHIVVEMELKLSSI----------QLSLTDFK---QDTSRIALDLV--GDSTEMIHKQ--RQSVRKWDPAK 284 (333)
Q Consensus 226 t----~~~i~~~~~~~~~k~~~l----------~lif~~~~---~~~~~l~~~L~--g~~~~~lh~~--r~~l~~f~~g~ 284 (333)
. ..++.+.+...+.+...+ .+|||+++ +.|++++..|. |+++..+||. .+.+++|++|+
T Consensus 296 ~~~~~~r~I~~~~~~~~~~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~~~l~~Fr~G~ 375 (1171)
T TIGR01054 296 GGSDTLRNVVDVYVEDEDLKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPKEDYEKFAEGE 375 (1171)
T ss_pred CccccccceEEEEEecccHHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCHHHHHHHHcCC
Confidence 2 346777775443211111 48999999 99999999997 8999999994 46789999999
Q ss_pred ccccccc
Q psy18032 285 KKYVQVT 291 (333)
Q Consensus 285 ~~vLvaT 291 (333)
++|||||
T Consensus 376 ~~vLVat 382 (1171)
T TIGR01054 376 IDVLIGV 382 (1171)
T ss_pred CCEEEEe
Confidence 9999996
No 59
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.94 E-value=5.2e-27 Score=217.11 Aligned_cols=252 Identities=19% Similarity=0.186 Sum_probs=200.4
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
.-...+++++++.+.+.|+..|++.+.|+|.-++.+ +++|+|.+++++|+||||++.-++-+..+.. .|.+-|++
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----~g~KmlfL 267 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----GGKKMLFL 267 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----CCCeEEEE
Confidence 346788999999999999999999999999999999 9999999999999999999999999998887 47789999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH----hhCCCCEEEECchHHHHHHHhccccccCchhhHH--
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR----LHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-- 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-- 187 (333)
+|..+||+|-++.|++-...+|+++..-+|-...+...+- ....++|+|+|-+-+-.+++.+ -++.++..+|+
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 9999999999999998667789999888887655543221 1225899999999999999887 67888999885
Q ss_pred ---------------HHHHHhhccccceeeeecCCChH--HHHHh-hhcCCcEEEeCCCceEEEEEec---chhhhhH--
Q psy18032 188 ---------------FVKELGKFTKLQSTCLLGGDSMD--NQFAR-LHASPDIVVATPGRFLHIVVEM---ELKLSSI-- 244 (333)
Q Consensus 188 ---------------~i~~l~~~~~~~~~~l~~sAT~~--~~v~~-l~~~~~i~~~t~~~i~~~~~~~---~~k~~~l-- 244 (333)
.|..++.+.| ..|.++.|||+. .++.+ +.-.....-..|-.+..|+... ..|.+.+
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~-~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~ 425 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFP-GAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDIIAR 425 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCC-CCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHHHHHH
Confidence 3333444444 689999999984 44433 3333333333444454444332 2333322
Q ss_pred -----------------HHHhhcchhhHHHHHHHhc--CCCcccccc-----chHHH-hhhCCCCcccccccc
Q psy18032 245 -----------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQSV-RKWDPAKKKYVQVTD 292 (333)
Q Consensus 245 -----------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~~l-~~f~~g~~~vLvaTd 292 (333)
++||.++++.|.++++.|. |+++..||+ +|+.+ ..|.++++.++|+|.
T Consensus 426 L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 426 LVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 5999999999999999996 999999997 56666 889999999999996
No 60
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=2.4e-26 Score=231.62 Aligned_cols=267 Identities=22% Similarity=0.264 Sum_probs=195.6
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
....+..++.+.|+..|+++|.+|+..+.+|+|++|+.|||||||+||++|+++.+...+ ..++|+|.||++||++|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---~a~AL~lYPtnALa~DQ 131 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP---SARALLLYPTNALANDQ 131 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---CccEEEEechhhhHhhH
Confidence 345568888899999999999999999999999999999999999999999999999843 34899999999999999
Q ss_pred HHHHHHHhccCC--ceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc----ccccCchhhHH----------
Q psy18032 124 FKFVKELGKFTK--LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME----LKLSSIQYTFK---------- 187 (333)
Q Consensus 124 ~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~----~~~~~l~~lV~---------- 187 (333)
.+.++++....+ +.+....|++...+......+.|+||+++|.+|..++-... ..+++++|||+
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc
Confidence 999999988776 77777888888877767778889999999999987554332 45778999995
Q ss_pred ------HHHHHhhc---cccceeeeecCCChHH---HHHhhhcCCcEE-E---eCCCceEEEEEecc-----------hh
Q psy18032 188 ------FVKELGKF---TKLQSTCLLGGDSMDN---QFARLHASPDIV-V---ATPGRFLHIVVEME-----------LK 240 (333)
Q Consensus 188 ------~i~~l~~~---~~~~~~~l~~sAT~~~---~v~~l~~~~~i~-~---~t~~~i~~~~~~~~-----------~k 240 (333)
.+..+.++ .+...|+++.|||+.+ ...++....... + +.|....+++.... .+
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccch
Confidence 33333333 3468899999999853 334443332222 2 22333333332211 11
Q ss_pred hhh-------------HHHHhhcchhhHHHHH----HHhc--C----CCcccccc-----chHHH-hhhCCCCccccccc
Q psy18032 241 LSS-------------IQLSLTDFKQDTSRIA----LDLV--G----DSTEMIHK-----QRQSV-RKWDPAKKKYVQVT 291 (333)
Q Consensus 241 ~~~-------------l~lif~~~~~~~~~l~----~~L~--g----~~~~~lh~-----~r~~l-~~f~~g~~~vLvaT 291 (333)
... ..++|+++++.++.+. ..+. + .++..+++ +|..+ .+|++|++.++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st 371 (851)
T COG1205 292 LAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIAT 371 (851)
T ss_pred HHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecc
Confidence 111 1478999999999986 2332 3 34555555 44444 89999999999999
Q ss_pred c----------------CCcccccccccEEEEccCC-Cc
Q psy18032 292 D----------------DTIPLVLEGRDVVAMARTG-SG 313 (333)
Q Consensus 292 d----------------~~i~~vi~~~~~~~~grtG-~g 313 (333)
. ..+|.+--..+.||.||+| .|
T Consensus 372 ~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~ 410 (851)
T COG1205 372 NALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG 410 (851)
T ss_pred hhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC
Confidence 7 3344421234889999999 45
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=3e-26 Score=225.21 Aligned_cols=246 Identities=15% Similarity=0.093 Sum_probs=170.7
Q ss_pred HHHHhHHHHHhcCCcEEEECCCCcHHHHH---------HHHHHHHHhhhh-cccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 62 PIQRKTIPLVLEGRDVVAMARTGSGKTAC---------FLIPMLEKLKTH-AATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 62 ~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~---------~~l~~l~~l~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.+|+++++.+++|+|++++|+||||||.+ |++|.+..+..- +...++++++++|+++||.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999987 555566554321 12235689999999999999999988755
Q ss_pred cc---CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHH--------------hh
Q psy18032 132 KF---TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKEL--------------GK 194 (333)
Q Consensus 132 ~~---~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l--------------~~ 194 (333)
.+ .+..+.+.+||.+. .+......+.+|+++||...+ ..+++++++|+ |+. ..
T Consensus 247 g~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVI--DEaHEr~~~~DllL~llk~ 316 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVII--DEVHEHDQIGDIIIAVARK 316 (675)
T ss_pred CccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEc--cccccCccchhHHHHHHHH
Confidence 44 46778888999873 222223336899999976311 24667777774 221 12
Q ss_pred ccccceeeeecCCChHHHHHhh---hcCCcEE-EeC--CCceEEEEEecc------------hh---------h----hh
Q psy18032 195 FTKLQSTCLLGGDSMDNQFARL---HASPDIV-VAT--PGRFLHIVVEME------------LK---------L----SS 243 (333)
Q Consensus 195 ~~~~~~~~l~~sAT~~~~v~~l---~~~~~i~-~~t--~~~i~~~~~~~~------------~k---------~----~~ 243 (333)
..+..+|++++|||+++.+..+ ..++..+ +.. ...+.+++.... .+ . ..
T Consensus 317 ~~~~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g 396 (675)
T PHA02653 317 HIDKIRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGS 396 (675)
T ss_pred hhhhcCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCC
Confidence 2233469999999998655443 3444333 321 123455543211 00 0 01
Q ss_pred HHHHhhcchhhHHHHHHHhc----CCCcccccc---ch-HHHhhh-CCCCcccccccc--------CCccccccc-----
Q psy18032 244 IQLSLTDFKQDTSRIALDLV----GDSTEMIHK---QR-QSVRKW-DPAKKKYVQVTD--------DTIPLVLEG----- 301 (333)
Q Consensus 244 l~lif~~~~~~~~~l~~~L~----g~~~~~lh~---~r-~~l~~f-~~g~~~vLvaTd--------~~i~~vi~~----- 301 (333)
-.+||++++++++.+++.|. ++.+..+|| ++ +.+++| ++|+.+|||||| +++..||+.
T Consensus 397 ~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~ 476 (675)
T PHA02653 397 SGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYV 476 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccC
Confidence 25899999999999999886 578999999 33 556787 799999999999 667777652
Q ss_pred --------------ccEEEEccCC---CchhhH
Q psy18032 302 --------------RDVVAMARTG---SGKTAC 317 (333)
Q Consensus 302 --------------~~~~~~grtG---~g~~~~ 317 (333)
.+.||+|||| .|+...
T Consensus 477 p~~~~g~~~~iSkasa~QRaGRAGR~~~G~c~r 509 (675)
T PHA02653 477 PEPFGGKEMFISKSMRTQRKGRVGRVSPGTYVY 509 (675)
T ss_pred CCcccCcccccCHHHHHHhccCcCCCCCCeEEE
Confidence 4689999999 565443
No 62
>KOG0352|consensus
Probab=99.94 E-value=6.6e-27 Score=209.66 Aligned_cols=257 Identities=17% Similarity=0.204 Sum_probs=185.3
Q ss_pred HHHHHHHh-CCCCCC-cHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 47 EVLKGVLK-RGYKIP-TPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 47 ~l~~~l~~-~g~~~~-~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
.+-++|++ +|++++ ++.|..++..+.++ +||.|++|||+||++||+||.|.. +..+||++|..+|+.++
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------~gITIV~SPLiALIkDQ 77 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------GGITIVISPLIALIKDQ 77 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------CCeEEEehHHHHHHHHH
Confidence 35567776 587766 89999999998776 699999999999999999999876 55899999999999999
Q ss_pred HHHHHHHhccCCceEEEEECCcchHHHHHHhh------CCCCEEEECchHHHHHHHh----ccccccCchhhHH------
Q psy18032 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLH------ASPDIVVATPGRFLHIVVE----MELKLSSIQYTFK------ 187 (333)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~IlI~TP~rll~~l~~----~~~~~~~l~~lV~------ 187 (333)
.+.+.+ +.+.+..+.+..+..++.+.+. ....+|+.|||.-..-..+ ....-+-++|+|+
T Consensus 78 iDHL~~----LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCV 153 (641)
T KOG0352|consen 78 IDHLKR----LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCV 153 (641)
T ss_pred HHHHHh----cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhH
Confidence 999998 4677777777777766655542 2478999999976533322 2334556777775
Q ss_pred ------HHHHHhhccc-----cceeeeecCCChHHHHHhh------hcCCcEEEeCCC-ceEEEEE--------------
Q psy18032 188 ------FVKELGKFTK-----LQSTCLLGGDSMDNQFARL------HASPDIVVATPG-RFLHIVV-------------- 235 (333)
Q Consensus 188 ------~i~~l~~~~~-----~~~~~l~~sAT~~~~v~~l------~~~~~i~~~t~~-~i~~~~~-------------- 235 (333)
|.+|+.++.. .....+..+||.+.++.+- .+.|.-+..||. |-..+|.
T Consensus 154 SQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~L 233 (641)
T KOG0352|consen 154 SQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVL 233 (641)
T ss_pred hhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhH
Confidence 6677665543 2466788899988777542 144444444553 1111110
Q ss_pred -----e----------cchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc-----chH-HHhhhCCCCcccccccc
Q psy18032 236 -----E----------MELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ-SVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 236 -----~----------~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~-~l~~f~~g~~~vLvaTd 292 (333)
. .........||||.|+.+||+++-.|. |+++..||+ +|. .-++|.++++.|++||.
T Consensus 234 aDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~ 313 (641)
T KOG0352|consen 234 ADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATV 313 (641)
T ss_pred HHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEe
Confidence 0 000111225999999999999998775 999999996 443 34999999999999996
Q ss_pred --------CCcccccc-------cccEEEEccCC-Cchh
Q psy18032 293 --------DTIPLVLE-------GRDVVAMARTG-SGKT 315 (333)
Q Consensus 293 --------~~i~~vi~-------~~~~~~~grtG-~g~~ 315 (333)
+++..|+. +-|||+.||+| .||.
T Consensus 314 SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~ 352 (641)
T KOG0352|consen 314 SFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKR 352 (641)
T ss_pred ccccccCCcceeEEEecCchhhhHHHHHhccccccCCCc
Confidence 44444543 33999999999 6763
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.92 E-value=8e-25 Score=220.26 Aligned_cols=235 Identities=16% Similarity=0.213 Sum_probs=172.8
Q ss_pred HHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH-HHhccCCceEEEEE
Q psy18032 64 QRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK-ELGKFTKLQSTCLL 142 (333)
Q Consensus 64 Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~ 142 (333)
-.+.+..+.++++++++||||||||.+|.+++++.... +++++++.|+|++|.|+++.+. .++...|..+...+
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v 84 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM 84 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe
Confidence 34566677788999999999999999999999986432 3589999999999999999985 45666777887777
Q ss_pred CCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------------HHHHHhhccccceeeeecCC
Q psy18032 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------------FVKELGKFTKLQSTCLLGGD 207 (333)
Q Consensus 143 g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------------~i~~l~~~~~~~~~~l~~sA 207 (333)
++.+... ++.+|+|+||++|++++.. ...+++++++|+ ++.++.+.++...+++++||
T Consensus 85 r~~~~~~------~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 85 RAESKVG------PNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred cCccccC------CCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 7664322 3568999999999998875 467899999995 12223333455789999999
Q ss_pred ChHHH-HHhhhcCCcEEEeCCCc---eEEEEEec--chhhh---------------hHHHHhhcchhhHHHHHHHhc---
Q psy18032 208 SMDNQ-FARLHASPDIVVATPGR---FLHIVVEM--ELKLS---------------SIQLSLTDFKQDTSRIALDLV--- 263 (333)
Q Consensus 208 T~~~~-v~~l~~~~~i~~~t~~~---i~~~~~~~--~~k~~---------------~l~lif~~~~~~~~~l~~~L~--- 263 (333)
|++.. +..+..++.++. .+++ +.++|... ..+.. .-.+||++++++++.+++.|.
T Consensus 158 Tl~~~~l~~~~~~~~~I~-~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~ 236 (812)
T PRK11664 158 TLDNDRLQQLLPDAPVIV-SEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRV 236 (812)
T ss_pred CCCHHHHHHhcCCCCEEE-ecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhc
Confidence 99754 444444333322 2332 44444322 11111 115899999999999998885
Q ss_pred --CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------------------------cc
Q psy18032 264 --GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------------------------GR 302 (333)
Q Consensus 264 --g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------------------------~~ 302 (333)
++.+..+|| +++.++.|++|+.+|||||| +++..||+ +.
T Consensus 237 ~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 316 (812)
T PRK11664 237 ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQAS 316 (812)
T ss_pred cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhh
Confidence 466778998 34567999999999999999 66777776 24
Q ss_pred cEEEEccCC
Q psy18032 303 DVVAMARTG 311 (333)
Q Consensus 303 ~~~~~grtG 311 (333)
+.||.||+|
T Consensus 317 a~QR~GRaG 325 (812)
T PRK11664 317 MTQRAGRAG 325 (812)
T ss_pred hhhhccccC
Confidence 789999999
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.7e-24 Score=210.08 Aligned_cols=105 Identities=23% Similarity=0.254 Sum_probs=94.2
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|.. |+++|..+++.++.|+ ++.+.||+|||++|.+|++..... |++++|++||++||.|.++.+..+.+++
T Consensus 100 lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-----G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 100 LGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-----GLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred hCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-----CCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 4766 9999999999999999 999999999999999999988665 7799999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
|+++.+++|+.+.. .+....+++|+|+|...+-
T Consensus 172 Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~ 204 (656)
T PRK12898 172 GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELV 204 (656)
T ss_pred CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchh
Confidence 99999999998654 3444568999999998773
No 65
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.91 E-value=4.6e-24 Score=214.43 Aligned_cols=240 Identities=16% Similarity=0.215 Sum_probs=173.1
Q ss_pred HHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH-HHhccCCceEEEEE
Q psy18032 64 QRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK-ELGKFTKLQSTCLL 142 (333)
Q Consensus 64 Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~ 142 (333)
-.+.+..+.++.+++++|+||||||.+|.+++++.... +++++++.|+|++|.|+++.+. .++...|..+...+
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-----~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~v 81 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-----GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRV 81 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-----CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEE
Confidence 34566677778999999999999999999999987632 4689999999999999999885 45555666676666
Q ss_pred CCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------------HHHHHhhccccceeeeecCC
Q psy18032 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------------FVKELGKFTKLQSTCLLGGD 207 (333)
Q Consensus 143 g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------------~i~~l~~~~~~~~~~l~~sA 207 (333)
++.+. ...+.+|+|+||++|++++.. ...+++++++|+ +..++...++...+++++||
T Consensus 82 r~~~~------~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 82 RGENK------VSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred ccccc------cCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeC
Confidence 55432 234689999999999998876 457888888885 12223333456789999999
Q ss_pred ChHHH-HHhhhcCCcEEEeCCCc---eEEEEEecc--hhh---------------hhHHHHhhcchhhHHHHHHHhc---
Q psy18032 208 SMDNQ-FARLHASPDIVVATPGR---FLHIVVEME--LKL---------------SSIQLSLTDFKQDTSRIALDLV--- 263 (333)
Q Consensus 208 T~~~~-v~~l~~~~~i~~~t~~~---i~~~~~~~~--~k~---------------~~l~lif~~~~~~~~~l~~~L~--- 263 (333)
|++.. +..+..++.++. .+++ +.++|.... .+. ..-.+||++++++++.+++.|.
T Consensus 155 Tl~~~~l~~~l~~~~vI~-~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~ 233 (819)
T TIGR01970 155 TLDGERLSSLLPDAPVVE-SEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERL 233 (819)
T ss_pred CCCHHHHHHHcCCCcEEE-ecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhc
Confidence 99754 344443333332 2332 344443221 111 0115899999999999998885
Q ss_pred --CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------------------------cc
Q psy18032 264 --GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------------------------GR 302 (333)
Q Consensus 264 --g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------------------------~~ 302 (333)
++.+..+|| |.+.++.|++|+.+|||||| +++..||+ +.
T Consensus 234 ~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 313 (819)
T TIGR01970 234 DSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQAS 313 (819)
T ss_pred CCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHH
Confidence 467888998 34567999999999999999 66777776 12
Q ss_pred cEEEEccCC---Cchhh
Q psy18032 303 DVVAMARTG---SGKTA 316 (333)
Q Consensus 303 ~~~~~grtG---~g~~~ 316 (333)
+.||.||+| .|...
T Consensus 314 a~QR~GRAGR~~~G~cy 330 (819)
T TIGR01970 314 ATQRAGRAGRLEPGVCY 330 (819)
T ss_pred HHhhhhhcCCCCCCEEE
Confidence 579999999 45443
No 66
>KOG0351|consensus
Probab=99.91 E-value=5.6e-25 Score=220.82 Aligned_cols=254 Identities=19% Similarity=0.249 Sum_probs=190.3
Q ss_pred HHHHHHH-hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 47 EVLKGVL-KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 47 ~l~~~l~-~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
+....+. .+|.+.+++-|.++|...+.|+|+++.+|||.||++||++|++-. ++-+|||+|..+|+++|..
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------~gitvVISPL~SLm~DQv~ 322 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------GGVTVVISPLISLMQDQVT 322 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------CCceEEeccHHHHHHHHHH
Confidence 3444444 579999999999999999999999999999999999999998764 5589999999999999999
Q ss_pred HHHHHhccCCceEEEEECCcchHHHHHH---hhC---CCCEEEECchHHHHHH--HhccccccC---chhhHH-------
Q psy18032 126 FVKELGKFTKLQSTCLLGGDSMDNQFAR---LHA---SPDIVVATPGRFLHIV--VEMELKLSS---IQYTFK------- 187 (333)
Q Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~---~~~IlI~TP~rll~~l--~~~~~~~~~---l~~lV~------- 187 (333)
.+.. .++....+.++....++... +.+ .++|++.|||++...- .....++.. +.++|+
T Consensus 323 ~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 323 HLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred hhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh
Confidence 8854 68999999999887655333 333 4899999999987422 222223333 444443
Q ss_pred -----HHHHHhhccc-----cceeeeecCCChHHHHHh-----hh-cCCcEEEeCCC--ceEEEEEecchhhh-------
Q psy18032 188 -----FVKELGKFTK-----LQSTCLLGGDSMDNQFAR-----LH-ASPDIVVATPG--RFLHIVVEMELKLS------- 242 (333)
Q Consensus 188 -----~i~~l~~~~~-----~~~~~l~~sAT~~~~v~~-----l~-~~~~i~~~t~~--~i~~~~~~~~~k~~------- 242 (333)
|.+++.++.- ....++..+||.+..+.+ |. .++.+...... ++.+.+.....+..
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHH
Confidence 6666554321 136788899998766544 22 45556655443 45555544331111
Q ss_pred -------hHHHHhhcchhhHHHHHHHhc--CCCcccccc-----chHHH-hhhCCCCcccccccc---------------
Q psy18032 243 -------SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQSV-RKWDPAKKKYVQVTD--------------- 292 (333)
Q Consensus 243 -------~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~~l-~~f~~g~~~vLvaTd--------------- 292 (333)
...||||.++++|+.++..|+ |++++.||+ +|+.+ .+|..++++|+|||-
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 115999999999999999997 889999997 56666 999999999999995
Q ss_pred -CCcccccccccEEEEccCC-Cc
Q psy18032 293 -DTIPLVLEGRDVVAMARTG-SG 313 (333)
Q Consensus 293 -~~i~~vi~~~~~~~~grtG-~g 313 (333)
..+|..+|+ |||.+||+| .|
T Consensus 559 H~~lPks~E~-YYQE~GRAGRDG 580 (941)
T KOG0351|consen 559 HYSLPKSFEG-YYQEAGRAGRDG 580 (941)
T ss_pred ECCCchhHHH-HHHhccccCcCC
Confidence 567777788 999999999 55
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.91 E-value=6.1e-24 Score=197.23 Aligned_cols=239 Identities=14% Similarity=0.107 Sum_probs=155.0
Q ss_pred HHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC----Cc
Q psy18032 63 IQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT----KL 136 (333)
Q Consensus 63 ~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~ 136 (333)
+|.++++++.++.+ ++++||||||||+||++|++.. +.++++++|+++|++|+++.++.+.... ++
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 59999999999975 8899999999999999999852 3468999999999999999999876432 45
Q ss_pred eEEEEECCcchH--HH-----------------H-HHhhCCCCEEEECchHHHHHHHhccc--------cccCchhhHHH
Q psy18032 137 QSTCLLGGDSMD--NQ-----------------F-ARLHASPDIVVATPGRFLHIVVEMEL--------KLSSIQYTFKF 188 (333)
Q Consensus 137 ~~~~~~g~~~~~--~~-----------------~-~~l~~~~~IlI~TP~rll~~l~~~~~--------~~~~l~~lV~~ 188 (333)
.+..+.|....+ .. . ....+.++|+++||+.+..++..... .+..+.++|+
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~- 151 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF- 151 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE-
Confidence 555556642221 00 0 11123688999999998766543211 1467777774
Q ss_pred HHHHhhc--------------------cccceeeeecCCChHHHHHhhhcC------CcEEE-eC--------------C
Q psy18032 189 VKELGKF--------------------TKLQSTCLLGGDSMDNQFARLHAS------PDIVV-AT--------------P 227 (333)
Q Consensus 189 i~~l~~~--------------------~~~~~~~l~~sAT~~~~v~~l~~~------~~i~~-~t--------------~ 227 (333)
|+++.+ .....+++++|||+++.+...... +.+.+ +. +
T Consensus 152 -DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 230 (357)
T TIGR03158 152 -DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNK 230 (357)
T ss_pred -ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccc
Confidence 222211 122468999999998775543211 11111 11 1
Q ss_pred --------CceEEEEEec-chhh------------------hhHHHHhhcchhhHHHHHHHhc----CCCccccccchHH
Q psy18032 228 --------GRFLHIVVEM-ELKL------------------SSIQLSLTDFKQDTSRIALDLV----GDSTEMIHKQRQS 276 (333)
Q Consensus 228 --------~~i~~~~~~~-~~k~------------------~~l~lif~~~~~~~~~l~~~L~----g~~~~~lh~~r~~ 276 (333)
+.+.+.+... ..+. ..-.+|||++++.+++++..|+ ++.+..+||....
T Consensus 231 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~ 310 (357)
T TIGR03158 231 TQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPK 310 (357)
T ss_pred ccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCH
Confidence 1344433321 1000 0125899999999999999997 2467788983222
Q ss_pred HhhhCCCCcccccccc-----CCccc--cc-c----cccEEEEccCC
Q psy18032 277 VRKWDPAKKKYVQVTD-----DTIPL--VL-E----GRDVVAMARTG 311 (333)
Q Consensus 277 l~~f~~g~~~vLvaTd-----~~i~~--vi-~----~~~~~~~grtG 311 (333)
-++.+.++.++||||| -|++. ++ + ..|+||+||||
T Consensus 311 ~~R~~~~~~~iLVaTdv~~rGiDi~~~~vi~~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 311 KDRERAMQFDILLGTSTVDVGVDFKRDWLIFSARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHhccCCEEEEecHHhcccCCCCceEEECCCCHHHHhhhcccCC
Confidence 2233456899999999 22221 11 1 45999999998
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.91 E-value=6e-24 Score=198.17 Aligned_cols=234 Identities=20% Similarity=0.192 Sum_probs=147.5
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcch--------
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM-------- 147 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~-------- 147 (333)
|++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+.. -.+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhccCC
Confidence 68999999999999999999988654 2356899999999999999999998632 133344443221
Q ss_pred ----HHHHHHh-h-----CCCCEEEECchHHHHHHHhc----cccccC--chhhHH------------HHHHHhhcc-cc
Q psy18032 148 ----DNQFARL-H-----ASPDIVVATPGRFLHIVVEM----ELKLSS--IQYTFK------------FVKELGKFT-KL 198 (333)
Q Consensus 148 ----~~~~~~l-~-----~~~~IlI~TP~rll~~l~~~----~~~~~~--l~~lV~------------~i~~l~~~~-~~ 198 (333)
....... . ...+|+++||++++..+... ...+.. .+++|+ ++..+...+ ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~ 154 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDN 154 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHc
Confidence 0000111 1 13679999999998776651 111111 133442 122222222 34
Q ss_pred ceeeeecCCChHHHHHhhhcCCcEE--EeCCC-----ce-EEEEE--ec--chhhh------------hHHHHhhcchhh
Q psy18032 199 QSTCLLGGDSMDNQFARLHASPDIV--VATPG-----RF-LHIVV--EM--ELKLS------------SIQLSLTDFKQD 254 (333)
Q Consensus 199 ~~~~l~~sAT~~~~v~~l~~~~~i~--~~t~~-----~i-~~~~~--~~--~~k~~------------~l~lif~~~~~~ 254 (333)
..|++++|||+++.+..+....... ...+. +. .+.+. .. ..+.. .-.+|||++++.
T Consensus 155 ~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 155 DVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 6899999999998887765322111 11111 11 11111 10 11111 125889999999
Q ss_pred HHHHHHHhc--CC--Ccccccc-----chH-----HHhhhCCCCcccccccc-----CCc--ccccc-----cccEEEEc
Q psy18032 255 TSRIALDLV--GD--STEMIHK-----QRQ-----SVRKWDPAKKKYVQVTD-----DTI--PLVLE-----GRDVVAMA 308 (333)
Q Consensus 255 ~~~l~~~L~--g~--~~~~lh~-----~r~-----~l~~f~~g~~~vLvaTd-----~~i--~~vi~-----~~~~~~~g 308 (333)
|+.++..|. +. .+..+|| +|+ .+++|++|+.++||||| -|+ +.+++ ..|+||+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~~~~~~~~~iqr~G 314 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDISADVMITELAPIDSLIQRLG 314 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccCCCEEEEcCCCHHHHHHHhc
Confidence 999999995 33 4889998 222 36899999999999999 222 33332 45999999
Q ss_pred cCC-Cchh
Q psy18032 309 RTG-SGKT 315 (333)
Q Consensus 309 rtG-~g~~ 315 (333)
|+| .|+.
T Consensus 315 R~gR~g~~ 322 (358)
T TIGR01587 315 RLHRYGRK 322 (358)
T ss_pred cccCCCCC
Confidence 999 4544
No 69
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.90 E-value=3.7e-24 Score=207.22 Aligned_cols=256 Identities=13% Similarity=0.033 Sum_probs=169.2
Q ss_pred CCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCc
Q psy18032 57 YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 136 (333)
.-.|+++|.++++.++.+.+.++++|||+|||+++...+...+.. .+.++|||+||++|+.|..+.+++++...+.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 347999999999999999999999999999999765432222222 2448999999999999999999998765555
Q ss_pred eEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------HHHHHhhccccceeeeecCC
Q psy18032 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------FVKELGKFTKLQSTCLLGGD 207 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------~i~~l~~~~~~~~~~l~~sA 207 (333)
.+..+.+|.... .+++|+|+||+++..... ..++++.++|+ ....+...++...+.+++||
T Consensus 188 ~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGLTA 257 (501)
T PHA02558 188 AMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGLTG 257 (501)
T ss_pred ceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchhHHHHHHhhhccceEEEEec
Confidence 565666665432 357899999999876442 23567777774 11222222334567899999
Q ss_pred ChHHHHH-------------------hhhc-----CCcEEEeC---C-CceEE-----------EEEecchhhh------
Q psy18032 208 SMDNQFA-------------------RLHA-----SPDIVVAT---P-GRFLH-----------IVVEMELKLS------ 242 (333)
Q Consensus 208 T~~~~v~-------------------~l~~-----~~~i~~~t---~-~~i~~-----------~~~~~~~k~~------ 242 (333)
|..+... ++.+ .+.+.... + ..... .+.+.+.+..
T Consensus 258 Tp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~ 337 (501)
T PHA02558 258 SLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLA 337 (501)
T ss_pred cCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHH
Confidence 9853211 0111 01111100 0 00000 0001000111
Q ss_pred -------hHHHHhhcchhhHHHHHHHhc--CCCcccccc-----chH-HHhhhCCCCccccccc-c--------CCcccc
Q psy18032 243 -------SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ-SVRKWDPAKKKYVQVT-D--------DTIPLV 298 (333)
Q Consensus 243 -------~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~-~l~~f~~g~~~vLvaT-d--------~~i~~v 298 (333)
.-.+||++.++.++.+++.|. |.++..+|| +|+ .++.|++|+..+|||| + ++++.+
T Consensus 338 ~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~v 417 (501)
T PHA02558 338 LKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHV 417 (501)
T ss_pred HHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEE
Confidence 113677788889999999997 889999998 343 4588899999999998 5 555666
Q ss_pred cc-------cccEEEEccCC---CchhhHHHhhhhhhc
Q psy18032 299 LE-------GRDVVAMARTG---SGKTACFLFYFFFRF 326 (333)
Q Consensus 299 i~-------~~~~~~~grtG---~g~~~~~~lp~~~~~ 326 (333)
+. ..|+||+||+| .||..+.++=+.+.+
T Consensus 418 Il~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 418 IFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred EEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 63 55889999998 678777766554443
No 70
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.90 E-value=8.1e-23 Score=169.99 Aligned_cols=152 Identities=28% Similarity=0.478 Sum_probs=125.3
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEE
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTC 140 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 140 (333)
||+|.++++.+.+|+|++++||||+|||++|.+|+++.+... +..++++++|+++|+.|+++.++.++...++++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---CCceEEEEeeccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999998873 23489999999999999999999998888899999
Q ss_pred EECCcchH-HHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----------HHHH---Hhhccc--cceeeee
Q psy18032 141 LLGGDSMD-NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------FVKE---LGKFTK--LQSTCLL 204 (333)
Q Consensus 141 ~~g~~~~~-~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------~i~~---l~~~~~--~~~~~l~ 204 (333)
++|+.... +....+.++++|+|+||+++.+++......+.+++++|+ +... +.+... .+.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~ 157 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIIL 157 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEE
T ss_pred ccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEE
Confidence 99998865 444555567999999999999999986667777888885 1111 222221 2588999
Q ss_pred cCCChHHHHHh
Q psy18032 205 GGDSMDNQFAR 215 (333)
Q Consensus 205 ~sAT~~~~v~~ 215 (333)
+|||+++.++.
T Consensus 158 ~SAT~~~~~~~ 168 (169)
T PF00270_consen 158 LSATLPSNVEK 168 (169)
T ss_dssp EESSSTHHHHH
T ss_pred EeeCCChhHhh
Confidence 99999976654
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.90 E-value=1.4e-23 Score=204.99 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=105.7
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|+. |+++|..+.+.+..|+ +++++||+|||++|.+|++..... |.++.|++||++||.|.++.+..+.+++
T Consensus 53 lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 53 LGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred hCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 5776 9999999999998886 999999999999999999654444 4579999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc------cccccCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM------ELKLSSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~------~~~~~~l~~lV~ 187 (333)
|+++.+++|+.+..++.... .++|+++||+++ .+++..+ .+.++.+.++|+
T Consensus 125 GLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aII 182 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAII 182 (745)
T ss_pred CCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEe
Confidence 99999999998876544333 589999999999 7888766 357788888885
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=4.7e-23 Score=204.13 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=103.4
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|. .|+++|..+++.+..|+ ++.+.||+|||++|.+|++..... |.++.|++||++||.|.++.+..+.+++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-----GKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-----CCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 477 49999999999999887 999999999999999999976665 7789999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhcc------ccccCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEME------LKLSSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~~------~~~~~l~~lV~ 187 (333)
|+++.++.|+.+..++.+. ..+++|+++||+++ .+++.... ..++.+.++|+
T Consensus 147 Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~Iv 205 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAII 205 (790)
T ss_pred CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEE
Confidence 9999999999983333333 34699999999999 45554332 35677888874
No 73
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.89 E-value=7.9e-23 Score=194.99 Aligned_cols=267 Identities=18% Similarity=0.254 Sum_probs=189.7
Q ss_pred cCCCHHHHHH-HHhCCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 42 FGLGFEVLKG-VLKRGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 42 ~~l~~~l~~~-l~~~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
++.+..+++. +..+.|+ +|..|++++..|... .+-+++|..|||||++++++++..+.. |.++.+++
T Consensus 245 ~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----G~Q~ALMA 318 (677)
T COG1200 245 LPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----GYQAALMA 318 (677)
T ss_pred CCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----CCeeEEec
Confidence 4455555555 4678999 999999999999986 479999999999999999999999887 89999999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH---HhhCC-CCEEEECchHHHHHHHhccccccCchhhHH---
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA---RLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYTFK--- 187 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~IlI~TP~rll~~l~~~~~~~~~l~~lV~--- 187 (333)
||.-||.|.++.+.++....|+++..++|....+...+ .+.+| .+|+||| +.+.+..+.++++.++|+
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEecc
Confidence 99999999999999999999999999999887655543 34455 9999999 777778899999999994
Q ss_pred ------HHHHHhhccccceeeeecCCChHHHHHhhh--cCCcEEE---eCCCc--eEEEEEecchhhh------------
Q psy18032 188 ------FVKELGKFTKLQSTCLLGGDSMDNQFARLH--ASPDIVV---ATPGR--FLHIVVEMELKLS------------ 242 (333)
Q Consensus 188 ------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~--~~~~i~~---~t~~~--i~~~~~~~~~k~~------------ 242 (333)
....+.......+..+++|||--+..-.+. .+-++.+ -.||| +.-.+...+....
T Consensus 394 HRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~G 473 (677)
T COG1200 394 HRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKG 473 (677)
T ss_pred ccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcC
Confidence 222232222225788999999644333322 2222222 24554 3333333221111
Q ss_pred hHHHHhhcch--------hhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc---------CCc
Q psy18032 243 SIQLSLTDFK--------QDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD---------DTI 295 (333)
Q Consensus 243 ~l~lif~~~~--------~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd---------~~i 295 (333)
+-++++|+-. +.|+++++.|. ++++.++|| +.+.|++|++|+++|||||+ ..-
T Consensus 474 rQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnAT 553 (677)
T COG1200 474 RQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNAT 553 (677)
T ss_pred CEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCe
Confidence 1246666633 34555555554 778999999 34577999999999999998 122
Q ss_pred ccccc-------cccEE-EEccCCCchhhHHHh
Q psy18032 296 PLVLE-------GRDVV-AMARTGSGKTACFLF 320 (333)
Q Consensus 296 ~~vi~-------~~~~~-~~grtG~g~~~~~~l 320 (333)
-+||+ + -+| -.||.|.|-.-+|++
T Consensus 554 vMVIe~AERFGLa-QLHQLRGRVGRG~~qSyC~ 585 (677)
T COG1200 554 VMVIENAERFGLA-QLHQLRGRVGRGDLQSYCV 585 (677)
T ss_pred EEEEechhhhhHH-HHHHhccccCCCCcceEEE
Confidence 23444 3 233 689999776666665
No 74
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.89 E-value=1.5e-22 Score=201.67 Aligned_cols=240 Identities=18% Similarity=0.182 Sum_probs=175.2
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
.+++.+.+.++..|+.+..+.|+.++.. +.+++|+++++|||||||+.+.+.+++.+.+. +.++++++|+++||.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa~ 90 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALAE 90 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHH
Confidence 3788888888889998888888888877 44569999999999999999999999999883 578999999999999
Q ss_pred HHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhcc-----
Q psy18032 122 QTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFT----- 196 (333)
Q Consensus 122 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~----- 196 (333)
|.++.++++ ...|+++...+|+...... . ..+++|+|+|||++-.++++.......++++| +|+++-+.
T Consensus 91 Ek~~~~~~~-~~~GirV~~~TgD~~~~~~--~-l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvV--iDEiH~l~d~~RG 164 (766)
T COG1204 91 EKYEEFSRL-EELGIRVGISTGDYDLDDE--R-LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVV--IDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHhhhH-HhcCCEEEEecCCcccchh--h-hccCCEEEEchHHhhHhhhcCcchhhcccEEE--EeeeeecCCcccC
Confidence 999999944 4579999999999875552 1 23689999999999999998888888999999 44433221
Q ss_pred -------------ccceeeeecCCChH--HHHHhhhcCCcEEE-eCCC-------ceEEEEEec-chh------------
Q psy18032 197 -------------KLQSTCLLGGDSMD--NQFARLHASPDIVV-ATPG-------RFLHIVVEM-ELK------------ 240 (333)
Q Consensus 197 -------------~~~~~~l~~sAT~~--~~v~~l~~~~~i~~-~t~~-------~i~~~~~~~-~~k------------ 240 (333)
....+.+..|||++ .++..+.+...+.. -.|. ....++... ..|
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~ 244 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALE 244 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHH
Confidence 12368999999997 46777754432211 1110 111122111 111
Q ss_pred -------hhhHHHHhhcchhhHHHHHHHhc---------------C-----CC------------------cccccc---
Q psy18032 241 -------LSSIQLSLTDFKQDTSRIALDLV---------------G-----DS------------------TEMIHK--- 272 (333)
Q Consensus 241 -------~~~l~lif~~~~~~~~~l~~~L~---------------g-----~~------------------~~~lh~--- 272 (333)
....+++||++++.+...|..+. . +. -..+|.
T Consensus 245 ~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL 324 (766)
T COG1204 245 LVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL 324 (766)
T ss_pred HHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCC
Confidence 11125899999999888876553 0 00 013342
Q ss_pred ---chHHH-hhhCCCCcccccccc
Q psy18032 273 ---QRQSV-RKWDPAKKKYVQVTD 292 (333)
Q Consensus 273 ---~r~~l-~~f~~g~~~vLvaTd 292 (333)
+|+.+ +.|+.|+++|||||-
T Consensus 325 ~~~~R~~vE~~Fr~g~ikVlv~Tp 348 (766)
T COG1204 325 PREDRQLVEDAFRKGKIKVLVSTP 348 (766)
T ss_pred CHHHHHHHHHHHhcCCceEEEech
Confidence 45666 889999999999996
No 75
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=5.6e-23 Score=188.82 Aligned_cols=124 Identities=22% Similarity=0.268 Sum_probs=108.4
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCce
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ 137 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 137 (333)
-+|+.+|.......+.+ |+|++.|||-|||+++++-+..++.+. +.++|+++||+.|+.|+.+.|++......-.
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~----~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF----GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc----CCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 35788888888777775 999999999999999999999999883 3389999999999999999999987766778
Q ss_pred EEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 138 STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 138 ~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
++.++|..+.+++ ...+...+|+|+||.-+.+.+..+.++++++.++|+
T Consensus 89 i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lif 137 (542)
T COG1111 89 IAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIF 137 (542)
T ss_pred eeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEe
Confidence 8889988887765 555666899999999999999999999999999994
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.87 E-value=8.9e-22 Score=193.49 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=97.2
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|. .|+++|......+..| .+++++||+|||++|.+|++..... +..++|++|+++||.|..+.+..+.+++
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-----g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT-----GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc-----CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 466 4777777777766665 7999999999999999998877665 5579999999999999999999999999
Q ss_pred CceEEEEECCcc---hHHHHHHhhCCCCEEEECchHH-HHHHHh------ccccccCchhhHH
Q psy18032 135 KLQSTCLLGGDS---MDNQFARLHASPDIVVATPGRF-LHIVVE------MELKLSSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~---~~~~~~~l~~~~~IlI~TP~rl-l~~l~~------~~~~~~~l~~lV~ 187 (333)
|+++.+++++.. .....+....+++|+++||+++ .+.+.. ....++.+.++|+
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IV 201 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIV 201 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEE
Confidence 999998887632 3333344446799999999999 454532 2345677888884
No 77
>KOG0353|consensus
Probab=99.85 E-value=3.8e-22 Score=176.94 Aligned_cols=243 Identities=16% Similarity=0.164 Sum_probs=168.6
Q ss_pred cccccCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 38 GFQSFGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 38 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
.=++++++.+..+.|++ +..++++|.|..+|.+.+.|+|++++.|||.||++||.+|++-. .+.+|+++|.
T Consensus 72 dkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a--------dg~alvi~pl 143 (695)
T KOG0353|consen 72 DKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA--------DGFALVICPL 143 (695)
T ss_pred ccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------CCceEeechh
Confidence 34678899999988886 58899999999999999999999999999999999999999864 4589999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH---hhC---CCCEEEECchHHHH---HHHh--ccccccCchhh
Q psy18032 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHA---SPDIVVATPGRFLH---IVVE--MELKLSSIQYT 185 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~---~~~IlI~TP~rll~---~l~~--~~~~~~~l~~l 185 (333)
..|+.++.-+++.+ |+....+....+.++..+. +.+ ...+++.||+.+.. ++.+ +.+....++.+
T Consensus 144 islmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 99999999999984 6666666655554443221 212 36899999998863 1211 11222222222
Q ss_pred HH------------HHHHHhhcc--c---cceeeeecCCChHHHHHhhhc------CCcEEEe--CCCceEEEEEecchh
Q psy18032 186 FK------------FVKELGKFT--K---LQSTCLLGGDSMDNQFARLHA------SPDIVVA--TPGRFLHIVVEMELK 240 (333)
Q Consensus 186 V~------------~i~~l~~~~--~---~~~~~l~~sAT~~~~v~~l~~------~~~i~~~--t~~~i~~~~~~~~~k 240 (333)
.+ |..++..+- . .....+..+||..+.+-.-.. ...-..+ ..+++.+.+.+....
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n 299 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGN 299 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCC
Confidence 21 455544321 1 244566777887655422211 1111111 234566666554221
Q ss_pred hh----hH------------HHHhhcchhhHHHHHHHhc--CCCcccccc-----chHHH-hhhCCCCcccccccc
Q psy18032 241 LS----SI------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQSV-RKWDPAKKKYVQVTD 292 (333)
Q Consensus 241 ~~----~l------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~~l-~~f~~g~~~vLvaTd 292 (333)
.+ .+ .+|||-++++|+.++..|. |+.+..||+ ++... +.|-+|+++|+|||-
T Consensus 300 ~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 300 EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEe
Confidence 11 11 4899999999999999996 999999998 34334 889999999999995
No 78
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.85 E-value=1.3e-20 Score=187.77 Aligned_cols=140 Identities=19% Similarity=0.245 Sum_probs=108.2
Q ss_pred CCcHHHHhHHHHHhcC---CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 59 IPTPIQRKTIPLVLEG---RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g---~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
.+|+.|+++++.+.++ +++++.|+||||||.+|+.++...+.. +.++||++|+++|+.|+++.+++. .+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----g~~vLvLvPt~~L~~Q~~~~l~~~---fg 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----GKQALVLVPEIALTPQMLARFRAR---FG 215 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHH---hC
Confidence 4899999999999984 789999999999999999888777665 678999999999999999999874 36
Q ss_pred ceEEEEECCcchHHHHHHh----hCCCCEEEECchHHHHHHHhccccccCchhhHH----------------HHHHHhh-
Q psy18032 136 LQSTCLLGGDSMDNQFARL----HASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------------FVKELGK- 194 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l----~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------------~i~~l~~- 194 (333)
.++..++|+.+..++.+.. .+.++|+|+||..+. ..+++++++|+ ...++..
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ 288 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV 288 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHH
Confidence 7899999998766554332 335899999998764 34667777774 0112211
Q ss_pred -ccccceeeeecCCChHHHH
Q psy18032 195 -FTKLQSTCLLGGDSMDNQF 213 (333)
Q Consensus 195 -~~~~~~~~l~~sAT~~~~v 213 (333)
....+.+++++|||.+.+.
T Consensus 289 ra~~~~~~~il~SATps~~s 308 (679)
T PRK05580 289 RAKLENIPVVLGSATPSLES 308 (679)
T ss_pred HhhccCCCEEEEcCCCCHHH
Confidence 1234678999999987544
No 79
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=7.7e-21 Score=188.23 Aligned_cols=141 Identities=16% Similarity=0.305 Sum_probs=125.6
Q ss_pred ccccCCCHHHHHHHH-----hCCCCCC---cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceE
Q psy18032 39 FQSFGLGFEVLKGVL-----KRGYKIP---TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRA 110 (333)
Q Consensus 39 f~~~~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 110 (333)
-+.|++..++.+.+. .+||..| +|+|.++++.+..++|++++++||+|||++|++|++..+.. +..+
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-----g~~v 138 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-----GKPV 138 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-----cCCe
Confidence 366788999888887 6899999 99999999999999999999999999999999999988765 2348
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhcccccc-------Cc
Q psy18032 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEMELKLS-------SI 182 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~~~~~~-------~l 182 (333)
+||+||++||.|..+.+..+.+++|+++.+++||.+..++.... +|+|+|+||+++ .++++.+.+.++ .+
T Consensus 139 ~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~ 216 (970)
T PRK12899 139 HLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGF 216 (970)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccc
Confidence 99999999999999999999999999999999999988876554 599999999999 999998877666 44
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
+++|
T Consensus 217 ~~~I 220 (970)
T PRK12899 217 YFAI 220 (970)
T ss_pred cEEE
Confidence 7777
No 80
>PRK13766 Hef nuclease; Provisional
Probab=99.83 E-value=3.3e-20 Score=189.21 Aligned_cols=125 Identities=23% Similarity=0.295 Sum_probs=105.0
Q ss_pred CCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCc
Q psy18032 57 YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 136 (333)
.-.|+++|.+++..++.+ |+++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.++.+....+.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----KGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 345899999999998887 99999999999999999999988743 3568999999999999999999987654455
Q ss_pred eEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
++..+.|+.+..+ ...+..+++|+|+||+.+...+..+.+.+.++.++|+
T Consensus 88 ~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVv 137 (773)
T PRK13766 88 KIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIF 137 (773)
T ss_pred eEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEE
Confidence 7788888877654 4455567899999999999888878888888888884
No 81
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.83 E-value=5.9e-20 Score=184.42 Aligned_cols=264 Identities=20% Similarity=0.168 Sum_probs=193.6
Q ss_pred cCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 42 FGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 42 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
++.+.+..+.+.+ ++|+ -|+-|..||..+.+. .|-++||..|.|||.+++=++...+.. |.|+.++|
T Consensus 577 f~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-----GKQVAvLV 650 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-----GKQVAVLV 650 (1139)
T ss_pred CCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-----CCeEEEEc
Confidence 4566677777765 6888 599999999999874 599999999999999999999988887 78999999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCchhhHHHHH
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVK 190 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~ 190 (333)
||.-||+|.++.|++-.+...+++..+..-.+.+++...+. + ..+||||| +-+-++.+.+++++++|+ |
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlII--D 723 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLII--D 723 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEE--e
Confidence 99999999999999877788899999888877777765543 3 49999999 666678899999999994 4
Q ss_pred HHhh----------ccccceeeeecCCChHHHHHhh-h---cCCcEEEeCCC--c--eEEEEEecchhhh----------
Q psy18032 191 ELGK----------FTKLQSTCLLGGDSMDNQFARL-H---ASPDIVVATPG--R--FLHIVVEMELKLS---------- 242 (333)
Q Consensus 191 ~l~~----------~~~~~~~~l~~sAT~~~~v~~l-~---~~~~i~~~t~~--~--i~~~~~~~~~k~~---------- 242 (333)
+-.+ -+..+.-++-.|||--+..-.+ + ++..++ .||+ | +.-++.+.+...-
T Consensus 724 EEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI-~TPP~~R~pV~T~V~~~d~~~ireAI~REl~R 802 (1139)
T COG1197 724 EEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVI-ATPPEDRLPVKTFVSEYDDLLIREAILRELLR 802 (1139)
T ss_pred chhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhc-cCCCCCCcceEEEEecCChHHHHHHHHHHHhc
Confidence 3222 2345677888999954433222 2 223333 3443 3 3333433221111
Q ss_pred -hHHHHhhcchhhHHHHHHHhc----CCCccccccc------hHHHhhhCCCCcccccccc-----CCcccc----cc--
Q psy18032 243 -SIQLSLTDFKQDTSRIALDLV----GDSTEMIHKQ------RQSVRKWDPAKKKYVQVTD-----DTIPLV----LE-- 300 (333)
Q Consensus 243 -~l~lif~~~~~~~~~l~~~L~----g~~~~~lh~~------r~~l~~f~~g~~~vLvaTd-----~~i~~v----i~-- 300 (333)
..++...|..+..+.++..|+ ..+.+..||| ++.|.+|.+|+++|||||+ -|||.. |+
T Consensus 803 gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 803 GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc
Confidence 113556688899998888776 6688999993 3578999999999999998 344432 33
Q ss_pred -----cccEEEEccCCCchhhHHH
Q psy18032 301 -----GRDVVAMARTGSGKTACFL 319 (333)
Q Consensus 301 -----~~~~~~~grtG~g~~~~~~ 319 (333)
+.-||-.||.|.++-.||+
T Consensus 883 D~fGLsQLyQLRGRVGRS~~~AYA 906 (1139)
T COG1197 883 DKFGLAQLYQLRGRVGRSNKQAYA 906 (1139)
T ss_pred ccccHHHHHHhccccCCccceEEE
Confidence 5567778999954444443
No 82
>KOG0354|consensus
Probab=99.83 E-value=9.9e-21 Score=183.16 Aligned_cols=146 Identities=19% Similarity=0.128 Sum_probs=114.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.++.+|.+.....+ |+|+|+++|||+|||+++...+++++.+.+ +.++|+++|++.|+.|+...+..++.. ..+
T Consensus 62 ~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~ 135 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---KGKVVFLAPTRPLVNQQIACFSIYLIP--YSV 135 (746)
T ss_pred cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC---cceEEEeeCCchHHHHHHHHHhhccCc--ccc
Confidence 48999999999999 999999999999999999999999999853 468999999999999999777776543 556
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcccc-ccCchhhHH--------------HHHHHhhccccceeee
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK-LSSIQYTFK--------------FVKELGKFTKLQSTCL 203 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~-~~~l~~lV~--------------~i~~l~~~~~~~~~~l 203 (333)
....||......+..+...++|+|.||.-+.+.+..+..+ ++++.++|+ .++.+...-....|++
T Consensus 136 T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qIL 215 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQIL 215 (746)
T ss_pred eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEE
Confidence 6666775554445567778999999999999988887654 488888884 1222222222334889
Q ss_pred ecCCChH
Q psy18032 204 LGGDSMD 210 (333)
Q Consensus 204 ~~sAT~~ 210 (333)
..+||..
T Consensus 216 gLTASpG 222 (746)
T KOG0354|consen 216 GLTASPG 222 (746)
T ss_pred EEecCCC
Confidence 9999875
No 83
>KOG0952|consensus
Probab=99.79 E-value=1.3e-18 Score=171.02 Aligned_cols=236 Identities=17% Similarity=0.214 Sum_probs=158.8
Q ss_pred hCCCCCCcHHHHhHHHHHhc-CCcEEEECCCCcHHHHHHHHHHHHHhhhhc-----ccCCceEEEEcccHHHHHHHHHHH
Q psy18032 54 KRGYKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHA-----ATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
-++|++++.+|+.++|.+.+ ..|.|+|||||||||-.|+|.+++.+..+. .....++++|+|+++||.++++.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 45889999999999999777 579999999999999999999999988632 245789999999999999999999
Q ss_pred HHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc--c-cccCchhhHH------------HHHHH
Q psy18032 128 KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME--L-KLSSIQYTFK------------FVKEL 192 (333)
Q Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~--~-~~~~l~~lV~------------~i~~l 192 (333)
.+-....|++|..++|+....... -..++|||+|||.+--.-++.. . -++.++++++ .++.|
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEti 261 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETI 261 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHH
Confidence 986667799999999998654422 2358999999998753333322 1 2344555553 11111
Q ss_pred ----hhcc---ccceeeeecCCChHH--HHHhhhcC--C-cEEE--e--CCCceEEEEEecchh----------------
Q psy18032 193 ----GKFT---KLQSTCLLGGDSMDN--QFARLHAS--P-DIVV--A--TPGRFLHIVVEMELK---------------- 240 (333)
Q Consensus 193 ----~~~~---~~~~~~l~~sAT~~~--~v~~l~~~--~-~i~~--~--t~~~i~~~~~~~~~k---------------- 240 (333)
.+.. -.....+..|||+|+ .++.+.+- + .+.- . .|--+.+.+.-...|
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~k 341 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDK 341 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHH
Confidence 1111 134567889999985 45555421 1 1111 0 111222222111000
Q ss_pred ------hhhHHHHhhcchhhHHHHHHHhc------CCCcccccc------------------------chHHH-hhhCCC
Q psy18032 241 ------LSSIQLSLTDFKQDTSRIALDLV------GDSTEMIHK------------------------QRQSV-RKWDPA 283 (333)
Q Consensus 241 ------~~~l~lif~~~~~~~~~l~~~L~------g~~~~~lh~------------------------~r~~l-~~f~~g 283 (333)
.++.+++||+++.++.+.|+.|. |.....+|+ +|+.+ ..|..|
T Consensus 342 v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G 421 (1230)
T KOG0952|consen 342 VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG 421 (1230)
T ss_pred HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC
Confidence 01125889999999888887763 333323322 45556 679999
Q ss_pred Ccccccccc
Q psy18032 284 KKKYVQVTD 292 (333)
Q Consensus 284 ~~~vLvaTd 292 (333)
.++||+||.
T Consensus 422 ~i~vL~cTa 430 (1230)
T KOG0952|consen 422 HIKVLCCTA 430 (1230)
T ss_pred CceEEEecc
Confidence 999999997
No 84
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.6e-17 Score=164.96 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=102.3
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|.. |.++|.-.--.+..| -++.++||+|||++|.+|++..... |..++|++||++||.|.++++..+.+++
T Consensus 79 lg~~-~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~-----G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 79 LGLR-HFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS-----GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred cCCC-cchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 4655 788888766666555 5999999999999999999987765 4569999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc-cccc-----cCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM-ELKL-----SSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~-~~~~-----~~l~~lV~ 187 (333)
|+++.+++||.+..++.... .++|+|+||++| .+++..+ .+++ +.+.++|+
T Consensus 151 GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~Iv 208 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIV 208 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEe
Confidence 99999999998877754443 689999999999 8888876 3344 57888884
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.74 E-value=1.4e-17 Score=167.97 Aligned_cols=251 Identities=16% Similarity=0.151 Sum_probs=151.0
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc--CC
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF--TK 135 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~ 135 (333)
..|+|+|+.+.........+++.||||+|||.++++.+...+.. ....+++|..||++.+++++++++++.+. .+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~---~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ---GLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 36999999886554445679999999999999988776644333 12358999999999999999999875432 23
Q ss_pred ceEEEEECCcchHHHH---------------------HHhh---C---CCCEEEECchHHHHHH-HhccccccCch----
Q psy18032 136 LQSTCLLGGDSMDNQF---------------------ARLH---A---SPDIVVATPGRFLHIV-VEMELKLSSIQ---- 183 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~---------------------~~l~---~---~~~IlI~TP~rll~~l-~~~~~~~~~l~---- 183 (333)
..+.+.+|........ +-+. + -.+|+|||+.+++... ..+...++.+.
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 4566777665322110 0111 1 1689999999988433 22222222222
Q ss_pred hhHH------------HHHHHhhc-cccceeeeecCCChHHHHHh-hhc----C---------CcEE-----------Ee
Q psy18032 184 YTFK------------FVKELGKF-TKLQSTCLLGGDSMDNQFAR-LHA----S---------PDIV-----------VA 225 (333)
Q Consensus 184 ~lV~------------~i~~l~~~-~~~~~~~l~~sAT~~~~v~~-l~~----~---------~~i~-----------~~ 225 (333)
.+|+ .+..+.+. ......++++|||++....+ +.. . |-+. ..
T Consensus 442 vvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 442 VLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred eEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 2331 11111111 12356789999999876543 211 0 0000 00
Q ss_pred C-----CCceEEEEEe---c--c---hh---------hhhHHHHhhcchhhHHHHHHHhc--C---CCcccccc-----c
Q psy18032 226 T-----PGRFLHIVVE---M--E---LK---------LSSIQLSLTDFKQDTSRIALDLV--G---DSTEMIHK-----Q 273 (333)
Q Consensus 226 t-----~~~i~~~~~~---~--~---~k---------~~~l~lif~~~~~~~~~l~~~L~--g---~~~~~lh~-----~ 273 (333)
. +.+..-.+.. . . .- ....++|||||+++|+++++.|+ + .++..+|+ +
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 0 0111000100 0 0 00 01125889999999999999986 2 46889998 2
Q ss_pred h-----HHHhhh-CCCC---cccccccc-------CCcccccc-----cccEEEEccCC
Q psy18032 274 R-----QSVRKW-DPAK---KKYVQVTD-------DTIPLVLE-----GRDVVAMARTG 311 (333)
Q Consensus 274 r-----~~l~~f-~~g~---~~vLvaTd-------~~i~~vi~-----~~~~~~~grtG 311 (333)
| +.++.| ++|+ ..|||||+ .+.+.++. ..++||+||+|
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId~DvlItdlaPidsLiQRaGR~~ 660 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLDFDWLITQLCPVDLLFQRLGRLH 660 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecCCCeEEECCCCHHHHHHHHhccC
Confidence 3 235788 7776 47999997 34444443 44899999999
No 86
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.73 E-value=1.9e-17 Score=170.79 Aligned_cols=233 Identities=16% Similarity=0.177 Sum_probs=143.1
Q ss_pred HHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHH-HhhhhcccCCceEEEEcc----cHHHHHHHHHHHHH-HhccCCc
Q psy18032 63 IQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE-KLKTHAATSGVRALILSP----TRELALQTFKFVKE-LGKFTKL 136 (333)
Q Consensus 63 ~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~-~l~~~~~~~~~~~lil~P----t~~L~~q~~~~~~~-~~~~~~~ 136 (333)
.-.+.++.+..++.++++|+||||||. ++|.+- .... .. ....++.-| +++||.++.+.+.. ++...|.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~--g~-~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR--GV-KGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC--CC-CCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 344555566666678899999999998 677432 2211 11 112222335 57888888888874 4444443
Q ss_pred eEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----------HHH-HHhhcccc--ceee
Q psy18032 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-----------FVK-ELGKFTKL--QSTC 202 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-----------~i~-~l~~~~~~--~~~~ 202 (333)
++ . .+++ ..++++|+|+||++|++.+.... .+++++++|+ |+. .+.++++. ..|+
T Consensus 153 ~v----r---f~~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKv 221 (1294)
T PRK11131 153 KV----R---FNDQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKV 221 (1294)
T ss_pred ee----c---Cccc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhcCCCceE
Confidence 32 1 1111 13468999999999999887654 4888999985 111 23334442 4799
Q ss_pred eecCCChHHH-HHh-hhcCCcEEEeCC-CceEEEEEecch--------hhh--------------hHHHHhhcchhhHHH
Q psy18032 203 LLGGDSMDNQ-FAR-LHASPDIVVATP-GRFLHIVVEMEL--------KLS--------------SIQLSLTDFKQDTSR 257 (333)
Q Consensus 203 l~~sAT~~~~-v~~-l~~~~~i~~~t~-~~i~~~~~~~~~--------k~~--------------~l~lif~~~~~~~~~ 257 (333)
+++|||++.+ ..+ +.+.|.+.+... ..+..++..... ... .-.+||++++.+++.
T Consensus 222 ILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~ 301 (1294)
T PRK11131 222 IITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRD 301 (1294)
T ss_pred EEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Confidence 9999999642 222 223443333211 113333332110 011 114899999999999
Q ss_pred HHHHhc--CCC---cccccc---chHHHhhhC-CCCcccccccc--------CCcccccc--------------------
Q psy18032 258 IALDLV--GDS---TEMIHK---QRQSVRKWD-PAKKKYVQVTD--------DTIPLVLE-------------------- 300 (333)
Q Consensus 258 l~~~L~--g~~---~~~lh~---~r~~l~~f~-~g~~~vLvaTd--------~~i~~vi~-------------------- 300 (333)
+++.|. +++ +..+|| +.++..-|. .|+.+|+|||| ++|..||+
T Consensus 302 lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~ 381 (1294)
T PRK11131 302 TADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPI 381 (1294)
T ss_pred HHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCe
Confidence 999996 443 457888 222223332 57899999999 56667776
Q ss_pred -----cccEEEEccCC
Q psy18032 301 -----GRDVVAMARTG 311 (333)
Q Consensus 301 -----~~~~~~~grtG 311 (333)
+.|.||+||+|
T Consensus 382 ~~iSkasa~QRaGRAG 397 (1294)
T PRK11131 382 EPISQASANQRKGRCG 397 (1294)
T ss_pred eecCHhhHhhhccccC
Confidence 35899999999
No 87
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=6e-17 Score=160.71 Aligned_cols=123 Identities=21% Similarity=0.265 Sum_probs=102.6
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|.. |+++|.-..=.+..|+ ++.++||+|||+++.+|++-.... |..+-|++||..||.|.++.+..+.+++
T Consensus 78 lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 78 LGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-----GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred hCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 4766 8999998887777764 999999999999999999643333 3357799999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhcc------ccccCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEME------LKLSSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~~------~~~~~l~~lV~ 187 (333)
|+++.++.|+.+..++.... .++|+++||+++ .++++.+. ...+.+.++|+
T Consensus 150 Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIv 207 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIV 207 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEE
Confidence 99999999999888766554 489999999999 78887654 34677777774
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=3.8e-17 Score=157.66 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=86.5
Q ss_pred EEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH---h
Q psy18032 78 VAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---L 154 (333)
Q Consensus 78 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l 154 (333)
|+.||||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++. .+..+..++|+.+..++.+. +
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~-----g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~~~~ 72 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL-----GKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAWRKV 72 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHHHHH
Confidence 478999999999998776555544 678999999999999999999874 35678888988876554333 2
Q ss_pred h-CCCCEEEECchHHHHHHHhccccccCchhhHH----------------HHHHHhhc--cccceeeeecCCChHHHH
Q psy18032 155 H-ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------------FVKELGKF--TKLQSTCLLGGDSMDNQF 213 (333)
Q Consensus 155 ~-~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------------~i~~l~~~--~~~~~~~l~~sAT~~~~v 213 (333)
. ..++|+|||+..+. ..+++++++|+ ...++..+ ...+.+++++|||-+.+.
T Consensus 73 ~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles 143 (505)
T TIGR00595 73 KNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLES 143 (505)
T ss_pred HcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHH
Confidence 2 35899999998663 34667777774 01111111 124678999999976443
No 89
>KOG0947|consensus
Probab=99.72 E-value=3.8e-17 Score=159.39 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=124.8
Q ss_pred HhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 53 LKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 53 ~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
...+|+ |..+|++||-++..|.+|+|.|+|.+|||+++-.++...-. ++.+++|-+|.++|.+|-++.|++-..
T Consensus 292 ~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~-----h~TR~iYTSPIKALSNQKfRDFk~tF~ 365 (1248)
T KOG0947|consen 292 LIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK-----HMTRTIYTSPIKALSNQKFRDFKETFG 365 (1248)
T ss_pred hhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh-----hccceEecchhhhhccchHHHHHHhcc
Confidence 456777 89999999999999999999999999999998887765533 377999999999999999999998433
Q ss_pred cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------------HHHHHhhccccc
Q psy18032 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------------FVKELGKFTKLQ 199 (333)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------------~i~~l~~~~~~~ 199 (333)
. +.+++|+..... .+.+||.|.|-|..++-++.--.+++.++|+ ..+++.-++|..
T Consensus 366 D----vgLlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 366 D----VGLLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred c----cceeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeecccc
Confidence 3 237788876554 5789999999999999988766777777775 444555678999
Q ss_pred eeeeecCCChHHH--HHh----hhcCCcEEEeCCC
Q psy18032 200 STCLLGGDSMDNQ--FAR----LHASPDIVVATPG 228 (333)
Q Consensus 200 ~~~l~~sAT~~~~--v~~----l~~~~~i~~~t~~ 228 (333)
.+.++.|||+++- .+. ..+....++.|+.
T Consensus 435 V~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~k 469 (1248)
T KOG0947|consen 435 VNFILLSATVPNTLEFADWIGRTKQKTIYVISTSK 469 (1248)
T ss_pred ceEEEEeccCCChHHHHHHhhhccCceEEEEecCC
Confidence 9999999999743 333 3344445555543
No 90
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.71 E-value=7.1e-17 Score=162.25 Aligned_cols=148 Identities=17% Similarity=0.173 Sum_probs=124.9
Q ss_pred HHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 50 KGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 50 ~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
......||+ |.++|++++-.+..|.+|+++||||||||++.-+++...+.. +.++++.+|.++|.+|.++.+..
T Consensus 111 ~~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 111 PPAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-----GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred cHHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----CCceEeccchhhhhhhHHHHHHH
Confidence 345678998 999999999999999999999999999999999998888776 55799999999999999999987
Q ss_pred HhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------------HHHHHhhcc
Q psy18032 130 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------------FVKELGKFT 196 (333)
Q Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------------~i~~l~~~~ 196 (333)
......-.+.+.+|+.+.+. .+.|+|.|-|-|.+++..+...+.++.++|+ ..++..-++
T Consensus 185 ~fgdv~~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 185 KFGDVADMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred HhhhhhhhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 32221234577788887765 6889999999999999999888888888885 455566677
Q ss_pred ccceeeeecCCChH
Q psy18032 197 KLQSTCLLGGDSMD 210 (333)
Q Consensus 197 ~~~~~~l~~sAT~~ 210 (333)
|...+.+++|||++
T Consensus 258 P~~v~~v~LSATv~ 271 (1041)
T COG4581 258 PDHVRFVFLSATVP 271 (1041)
T ss_pred CCCCcEEEEeCCCC
Confidence 88899999999996
No 91
>KOG0948|consensus
Probab=99.70 E-value=4.6e-17 Score=155.35 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=124.5
Q ss_pred HhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 53 LKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 53 ~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
+.+.|. +.|+|..+|..+-++++|+|.|.|.+|||.++-+++...+.. +-++|+-+|-++|.+|-|+.+..-.+
T Consensus 124 k~YPF~-LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 124 KTYPFT-LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred cCCCcc-cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhc
Confidence 344555 899999999999999999999999999999999999988877 55899999999999999999987333
Q ss_pred cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh---------------hccc
Q psy18032 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG---------------KFTK 197 (333)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~---------------~~~~ 197 (333)
.|.+.+|+.+.+. .+.+||.|.|-|..++-++.--++.+.++|+ |+++ -++|
T Consensus 198 ----DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIF--DEIHYMRDkERGVVWEETIIllP 264 (1041)
T KOG0948|consen 198 ----DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIF--DEIHYMRDKERGVVWEETIILLP 264 (1041)
T ss_pred ----ccceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEe--eeehhccccccceeeeeeEEecc
Confidence 2567788887766 5789999999999999998888888888883 4333 2457
Q ss_pred cceeeeecCCChHHH------HHhhhcCCcEEEe
Q psy18032 198 LQSTCLLGGDSMDNQ------FARLHASPDIVVA 225 (333)
Q Consensus 198 ~~~~~l~~sAT~~~~------v~~l~~~~~i~~~ 225 (333)
.+...++.|||+++. +..+...|..++-
T Consensus 265 ~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVY 298 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVY 298 (1041)
T ss_pred ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEe
Confidence 788899999999843 3334455644443
No 92
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.66 E-value=4.4e-15 Score=146.55 Aligned_cols=247 Identities=18% Similarity=0.230 Sum_probs=155.3
Q ss_pred HHHHHHhC-CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 48 VLKGVLKR-GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 48 l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
+.+.+++. || .|+..|.-....+..|++.-+.||||.|||.--++..+ .+.. +|.++++|+||+.|+.|.++.
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl-~~a~----kgkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL-YLAK----KGKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH-HHHh----cCCeEEEEecCHHHHHHHHHH
Confidence 34445554 66 59999999999999999999999999999964443333 3232 367999999999999999999
Q ss_pred HHHHhccCC-ceEEE-EECCcchHHH---HHHhhC-CCCEEEECchHHHHHHHh---ccc---cccCchhhHH---HHHH
Q psy18032 127 VKELGKFTK-LQSTC-LLGGDSMDNQ---FARLHA-SPDIVVATPGRFLHIVVE---MEL---KLSSIQYTFK---FVKE 191 (333)
Q Consensus 127 ~~~~~~~~~-~~~~~-~~g~~~~~~~---~~~l~~-~~~IlI~TP~rll~~l~~---~~~---~~~~l~~lV~---~i~~ 191 (333)
+..++...+ ..+.. .++..+.++. .+.+.+ +.+|+|+|..-|...... ..+ ..+++.-+.- .+|.
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHH
Confidence 999987666 44444 3444444332 344444 599999998777644432 111 1222222111 0000
Q ss_pred Hhhcc--------------------------------------------ccceeeeecCCChHHHH---HhhhcCCcEEE
Q psy18032 192 LGKFT--------------------------------------------KLQSTCLLGGDSMDNQF---ARLHASPDIVV 224 (333)
Q Consensus 192 l~~~~--------------------------------------------~~~~~~l~~sAT~~~~v---~~l~~~~~i~~ 224 (333)
+..++ ....+.+..|||..+.= .-+..-....+
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev 304 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV 304 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc
Confidence 00000 01234455555543210 00000011111
Q ss_pred e----CCCceEEEEEecchhhh--hH-------HHHhhcc---hhhHHHHHHHhc--CCCcccccc-chHHHhhhCCCCc
Q psy18032 225 A----TPGRFLHIVVEMELKLS--SI-------QLSLTDF---KQDTSRIALDLV--GDSTEMIHK-QRQSVRKWDPAKK 285 (333)
Q Consensus 225 ~----t~~~i~~~~~~~~~k~~--~l-------~lif~~~---~~~~~~l~~~L~--g~~~~~lh~-~r~~l~~f~~g~~ 285 (333)
+ ...|+.+.+...+...+ .+ .+||+.. ++.+++++++|+ |+++..+|+ .++.++.|..|++
T Consensus 305 G~~~~~LRNIvD~y~~~~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~~~~le~F~~Gei 384 (1187)
T COG1110 305 GSGGEGLRNIVDIYVESESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEKEEALEDFEEGEV 384 (1187)
T ss_pred CccchhhhheeeeeccCccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccchhhhhhhccCce
Confidence 1 12367777765532221 11 4889998 899999999997 999999998 5778899999999
Q ss_pred ccccccc---------CCcccccc
Q psy18032 286 KYVQVTD---------DTIPLVLE 300 (333)
Q Consensus 286 ~vLvaTd---------~~i~~vi~ 300 (333)
++||... -|+|+.+-
T Consensus 385 dvLVGvAsyYG~lVRGlDLP~rir 408 (1187)
T COG1110 385 DVLVGVASYYGVLVRGLDLPHRIR 408 (1187)
T ss_pred eEEEEecccccceeecCCchhhee
Confidence 9999775 56676664
No 93
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=1.7e-15 Score=149.46 Aligned_cols=250 Identities=14% Similarity=0.130 Sum_probs=149.8
Q ss_pred CCcHHHHhHHHHHhc-C--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 59 IPTPIQRKTIPLVLE-G--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~-g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
.++|+|.+++..+.. | +..++++|||+|||+..+..+... +.++|||||+.+|+.|..+.+.++.....
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l--------~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV--------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh--------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 389999999999774 4 478999999999999888665432 23699999999999999999998765445
Q ss_pred ceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh--------ccccccCchhhHH------HHHHHhhccc--cc
Q psy18032 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE--------MELKLSSIQYTFK------FVKELGKFTK--LQ 199 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~--------~~~~~~~l~~lV~------~i~~l~~~~~--~~ 199 (333)
..+..++|+.... ......|+|+|...+.....+ ..+.-....++|+ -...+.+++. ..
T Consensus 327 ~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~il~~l~a 401 (732)
T TIGR00603 327 SQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRVLTIVQA 401 (732)
T ss_pred ceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHHHHhcCc
Confidence 5566666654321 122367999999766422111 0111123334442 0111111111 12
Q ss_pred eeeeecCCChHHH---HHhh--hcCCcEEEeC------CCceEE-----EEE-----------------------ecchh
Q psy18032 200 STCLLGGDSMDNQ---FARL--HASPDIVVAT------PGRFLH-----IVV-----------------------EMELK 240 (333)
Q Consensus 200 ~~~l~~sAT~~~~---v~~l--~~~~~i~~~t------~~~i~~-----~~~-----------------------~~~~k 240 (333)
...+.+|||...+ ...+ .-+|.+...+ .|-+.. ..+ ....|
T Consensus 402 ~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K 481 (732)
T TIGR00603 402 HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNK 481 (732)
T ss_pred CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHH
Confidence 3457788887421 1111 1122222110 111100 000 00111
Q ss_pred hhh-------------HHHHhhcchhhHHHHHHHhcCCCcccccc-----ch-HHHhhhCCC-Ccccccccc--------
Q psy18032 241 LSS-------------IQLSLTDFKQDTSRIALDLVGDSTEMIHK-----QR-QSVRKWDPA-KKKYVQVTD-------- 292 (333)
Q Consensus 241 ~~~-------------l~lif~~~~~~~~~l~~~L~g~~~~~lh~-----~r-~~l~~f~~g-~~~vLvaTd-------- 292 (333)
... -.+|||++.+.++.++..|. +..+|| +| +.+++|++| ++++||+|+
T Consensus 482 ~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~---~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDl 558 (732)
T TIGR00603 482 FRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG---KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDL 558 (732)
T ss_pred HHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC---CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCC
Confidence 111 14789999999999998773 456787 34 456999865 889999997
Q ss_pred CCcccccc--------cccEEEEccCC---Cchh----hHHHhhhhh
Q psy18032 293 DTIPLVLE--------GRDVVAMARTG---SGKT----ACFLFYFFF 324 (333)
Q Consensus 293 ~~i~~vi~--------~~~~~~~grtG---~g~~----~~~~lp~~~ 324 (333)
++...+|. ..|+||+||++ .|+. .||+..++.
T Consensus 559 P~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs 605 (732)
T TIGR00603 559 PEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVS 605 (732)
T ss_pred CCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEec
Confidence 55566664 45789999998 3444 466666654
No 94
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.61 E-value=2.1e-14 Score=121.49 Aligned_cols=159 Identities=38% Similarity=0.509 Sum_probs=119.7
Q ss_pred hCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
..++..|++.|.++++.+..+ +++++++|||+|||.++..+++..+.... ...+++++|+.+++.|..+.+..+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---GKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---CCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 456788999999999999999 99999999999999999999999887632 35799999999999999999998766
Q ss_pred cCCceEEEEECCcchHHHHHHhhCCC-CEEEECchHHHHHHHhccccccCchhhHH-HH---------HHH---hhcccc
Q psy18032 133 FTKLQSTCLLGGDSMDNQFARLHASP-DIVVATPGRFLHIVVEMELKLSSIQYTFK-FV---------KEL---GKFTKL 198 (333)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~-~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~i---------~~l---~~~~~~ 198 (333)
..........++....+....+.++. +++++||+.+.+...........+.++|+ .. +.+ ....+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~ 159 (201)
T smart00487 80 SLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPK 159 (201)
T ss_pred cCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCc
Confidence 55444555566665455555555555 99999999999998887655666666663 11 111 122234
Q ss_pred ceeeeecCCChHHHHHh
Q psy18032 199 QSTCLLGGDSMDNQFAR 215 (333)
Q Consensus 199 ~~~~l~~sAT~~~~v~~ 215 (333)
....+++|||.++....
T Consensus 160 ~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 160 NVQLLLLSATPPEEIEN 176 (201)
T ss_pred cceEEEEecCCchhHHH
Confidence 67778888888654443
No 95
>KOG0951|consensus
Probab=99.60 E-value=8.5e-15 Score=146.48 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=119.2
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcc------cCCceEEEEccc
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAA------TSGVRALILSPT 116 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~------~~~~~~lil~Pt 116 (333)
++++-..++ .|+..+.++|.....+.+.+ .|+++|||||+|||-.+++.+++.+..+.. -...+.++++|.
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 444444444 36677999999999998887 579999999999999999999999887543 224589999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cc-cccCchhhHHHHHHHh-
Q psy18032 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-EL-KLSSIQYTFKFVKELG- 193 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~-~~~~l~~lV~~i~~l~- 193 (333)
.+|++++...+.+-....|++|.-.+|+.....+. ..+.+|+|+|||..--.-+++ .. ...-++.++ +|+++
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlI--IDEIHL 448 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLI--IDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHh--hhhhhh
Confidence 99999999999987788999999999987643321 125789999999864333331 11 122345555 33331
Q ss_pred ------------------hc--cccceeeeecCCChHH--HHHh
Q psy18032 194 ------------------KF--TKLQSTCLLGGDSMDN--QFAR 215 (333)
Q Consensus 194 ------------------~~--~~~~~~~l~~sAT~~~--~v~~ 215 (333)
+. -...+..+..|||+++ .+..
T Consensus 449 LhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~ 492 (1674)
T KOG0951|consen 449 LHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVAS 492 (1674)
T ss_pred cccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHH
Confidence 00 0125667889999985 4444
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=5.2e-14 Score=139.93 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=98.4
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|.. |+++|.-.--.+.. .-++.++||.|||++|.+|++..... |..+.|++|+.+||.+..+++..+..++
T Consensus 79 lgm~-~ydVQliGgl~L~~--G~IaEm~TGEGKTL~a~lp~~l~al~-----g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 79 FEMR-HFDVQLLGGMVLDS--NRIAEMRTGEGKTLTATLPAYLNALT-----GKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred hCCC-cCchHHhcchHhcC--CccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 4665 78888765544544 46999999999999999999988776 4559999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc-cccc-----cCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM-ELKL-----SSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~-~~~~-----~~l~~lV~ 187 (333)
|+++.++.++.+..+.. -.-+++|+++||+++ .+++..+ .+.. +.+.++|+
T Consensus 151 Glsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIv 208 (908)
T PRK13107 151 GLTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALI 208 (908)
T ss_pred CCeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeee
Confidence 99999999988764422 222689999999999 7888776 3333 66666663
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=2.2e-14 Score=142.13 Aligned_cols=105 Identities=24% Similarity=0.226 Sum_probs=91.2
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|+. |+++|.-.-=.+..|+ ++.+.||+|||+++.+|++..... |.++-+++||..||.+-++.+..+.+.+
T Consensus 77 ~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 77 LGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-----GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred hCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-----CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 4666 8999998887777776 999999999999999999988777 7789999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
|+++.++.|+.+..+..... .++|+++|...+-
T Consensus 149 Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~g 181 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELG 181 (796)
T ss_pred CCeEEEeCCCCCHHHHHHHh--cCCCeecCCcccc
Confidence 99999999887776654333 5899999997664
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.54 E-value=2.4e-14 Score=126.29 Aligned_cols=233 Identities=20% Similarity=0.269 Sum_probs=157.4
Q ss_pred CCC-CCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 56 GYK-IPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 56 g~~-~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
+|+ ++++.|..+-..++ +.+|.++.|-||+|||....-.+-..+.. |.++.+.+|....+.+++.+++.
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~-----G~~vciASPRvDVclEl~~Rlk~- 166 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ-----GGRVCIASPRVDVCLELYPRLKQ- 166 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc-----CCeEEEecCcccchHHHHHHHHH-
Confidence 443 58999988766544 46899999999999998655555555444 88999999999999999999998
Q ss_pred hccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhc---------------
Q psy18032 131 GKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKF--------------- 195 (333)
Q Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~--------------- 195 (333)
.+.+..+.+++|+.+..- ..+++|+|-.+|+..-..-+ +++ +|+++++
T Consensus 167 -aF~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~aFD-------~li--IDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 167 -AFSNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQAFD-------LLI--IDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred -hhccCCeeeEecCCchhc-------cccEEEEehHHHHHHHhhcc-------EEE--EeccccccccCCHHHHHHHHHh
Confidence 445788889998876544 36799999999987765433 222 3333332
Q ss_pred cccceeeeecCCChHHHHHhhhcCCcEE-EeCCCc-------eEEEEE---------------------ecchhhhhHHH
Q psy18032 196 TKLQSTCLLGGDSMDNQFARLHASPDIV-VATPGR-------FLHIVV---------------------EMELKLSSIQL 246 (333)
Q Consensus 196 ~~~~~~~l~~sAT~~~~v~~l~~~~~i~-~~t~~~-------i~~~~~---------------------~~~~k~~~l~l 246 (333)
.......++.+||-++...+-...-.+. +--|.| +-.++- +...+.....+
T Consensus 230 rk~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred hcccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 2235667899999987775543222221 111111 000010 00112223368
Q ss_pred HhhcchhhHHHHHHHhc-CC---Ccccccc----chHHHhhhCCCCcccccccc--------CCccccc-c--------c
Q psy18032 247 SLTDFKQDTSRIALDLV-GD---STEMIHK----QRQSVRKWDPAKKKYVQVTD--------DTIPLVL-E--------G 301 (333)
Q Consensus 247 if~~~~~~~~~l~~~L~-g~---~~~~lh~----~r~~l~~f~~g~~~vLvaTd--------~~i~~vi-~--------~ 301 (333)
+|+++.+.++.++..|. ++ ..+..|+ +.+.+++|++|++.+|++|+ ++++..+ + +
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 99999999999998884 44 3357787 55788999999999999998 4444333 2 3
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.-+|-.||+|
T Consensus 390 aLVQIaGRvG 399 (441)
T COG4098 390 ALVQIAGRVG 399 (441)
T ss_pred HHHHHhhhcc
Confidence 3566677777
No 99
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.53 E-value=1e-13 Score=143.95 Aligned_cols=244 Identities=18% Similarity=0.155 Sum_probs=146.8
Q ss_pred CCCCCCcHHHH---hHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 55 RGYKIPTPIQR---KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 55 ~g~~~~~~~Q~---~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
..|...-|+.. +.+..+.+.+.++++|+||||||. ++|.+..-.. .....+.++.-|.|--|..+.+.+...
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~--~~~~~~I~~tQPRRlAA~svA~RvA~e- 134 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG--RGSHGLIGHTQPRRLAARTVAQRIAEE- 134 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC--CCCCceEecCCccHHHHHHHHHHHHHH-
Confidence 45665566655 455556566778999999999998 4564432111 111234555668888788777666542
Q ss_pred ccCCceEEEEECC-cchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----------HHHH-Hhhccc-
Q psy18032 132 KFTKLQSTCLLGG-DSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-----------FVKE-LGKFTK- 197 (333)
Q Consensus 132 ~~~~~~~~~~~g~-~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-----------~i~~-l~~~~~- 197 (333)
.|..+...+|. ...+.+ ...+.+|.++||++|+..+.... .++++.++|+ ++-. +.+++.
T Consensus 135 --lg~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~ 208 (1283)
T TIGR01967 135 --LGTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR 208 (1283)
T ss_pred --hCCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh
Confidence 33444444442 222221 12368899999999998886643 4788888885 1111 222222
Q ss_pred -cceeeeecCCChHH-HHHhhh-cCCcEEEeCCCc---eEEEEEecc--------hhhh--------------hHHHHhh
Q psy18032 198 -LQSTCLLGGDSMDN-QFARLH-ASPDIVVATPGR---FLHIVVEME--------LKLS--------------SIQLSLT 249 (333)
Q Consensus 198 -~~~~~l~~sAT~~~-~v~~l~-~~~~i~~~t~~~---i~~~~~~~~--------~k~~--------------~l~lif~ 249 (333)
...+++++|||+.. .+.+.. +.|.+.+ +|+ +..+|.... .... .-.+||+
T Consensus 209 rpdLKlIlmSATld~~~fa~~F~~apvI~V--~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFL 286 (1283)
T TIGR01967 209 RPDLKIIITSATIDPERFSRHFNNAPIIEV--SGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFL 286 (1283)
T ss_pred CCCCeEEEEeCCcCHHHHHHHhcCCCEEEE--CCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 25689999999963 233332 3343333 232 222332110 0101 1148999
Q ss_pred cchhhHHHHHHHhc--C---CCcccccc---chHHHhhhCCC-Ccccccccc--------CCcccccc------------
Q psy18032 250 DFKQDTSRIALDLV--G---DSTEMIHK---QRQSVRKWDPA-KKKYVQVTD--------DTIPLVLE------------ 300 (333)
Q Consensus 250 ~~~~~~~~l~~~L~--g---~~~~~lh~---~r~~l~~f~~g-~~~vLvaTd--------~~i~~vi~------------ 300 (333)
+++++++.+++.|. + ..+..+|| ..+..+.|+.+ ..+|++||| ++|..||+
T Consensus 287 pg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~ 366 (1283)
T TIGR01967 287 PGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYR 366 (1283)
T ss_pred CCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccccc
Confidence 99999999999886 2 34667898 22333446544 469999998 56666775
Q ss_pred -------------cccEEEEccCC
Q psy18032 301 -------------GRDVVAMARTG 311 (333)
Q Consensus 301 -------------~~~~~~~grtG 311 (333)
+.+.||.||+|
T Consensus 367 ~~~~~L~~~~ISkasa~QRaGRAG 390 (1283)
T TIGR01967 367 TKVQRLPIEPISQASANQRKGRCG 390 (1283)
T ss_pred cCccccCCccCCHHHHHHHhhhhC
Confidence 25789999999
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.39 E-value=9.5e-13 Score=136.89 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=72.8
Q ss_pred CCcHHHHhHHHHHhc----C-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 59 IPTPIQRKTIPLVLE----G-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~----g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.++++|.+++..+.+ | +..+++++||||||.+++. ++.++... ....++|+|+|+.+|+.|..+.|..+.-.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~--~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA--KRFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc--CccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 489999999988763 3 5799999999999987443 44444432 22458999999999999999999986322
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHH
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 172 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l 172 (333)
.+.....+++.....+. ......+|+|+|...+...+
T Consensus 490 ~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~ 526 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRI 526 (1123)
T ss_pred cccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhh
Confidence 22111112221111111 11235789999999887654
No 101
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.38 E-value=4.5e-12 Score=120.97 Aligned_cols=234 Identities=18% Similarity=0.186 Sum_probs=138.8
Q ss_pred CCcHHHHhHHHHHhc----CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPLVLE----GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|+++|++++..+.+ ++..++++|||+|||.+++-.+... +..+|||+|+.+|+.|..+.+.......
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 389999999999999 8899999999999999887766554 2349999999999999987777643221
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccc----------ccee-ee
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTK----------LQST-CL 203 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~----------~~~~-~l 203 (333)
..+. .+|+...+.. ...|.|+|-..+...........++..++| +|+.++... .... .+
T Consensus 108 -~~~g-~~~~~~~~~~------~~~i~vat~qtl~~~~~l~~~~~~~~~liI--~DE~Hh~~a~~~~~~~~~~~~~~~~L 177 (442)
T COG1061 108 -DEIG-IYGGGEKELE------PAKVTVATVQTLARRQLLDEFLGNEFGLII--FDEVHHLPAPSYRRILELLSAAYPRL 177 (442)
T ss_pred -cccc-eecCceeccC------CCcEEEEEhHHHhhhhhhhhhcccccCEEE--EEccccCCcHHHHHHHHhhhccccee
Confidence 1222 3333333221 136999997766543211122233455555 333332221 1112 68
Q ss_pred ecCCChHH----HHHhhh--cCCcEEEeCC------C-----ceEEEEE-------------------------------
Q psy18032 204 LGGDSMDN----QFARLH--ASPDIVVATP------G-----RFLHIVV------------------------------- 235 (333)
Q Consensus 204 ~~sAT~~~----~v~~l~--~~~~i~~~t~------~-----~i~~~~~------------------------------- 235 (333)
.+|||... .+..+. .++.+...+. + .+.....
T Consensus 178 GLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (442)
T COG1061 178 GLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAEN 257 (442)
T ss_pred eeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHH
Confidence 89999541 111111 1111111100 1 0000000
Q ss_pred -------ecchhhh------------hHHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccc
Q psy18032 236 -------EMELKLS------------SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYV 288 (333)
Q Consensus 236 -------~~~~k~~------------~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vL 288 (333)
..+.+.. .-.++|+..+..++.++..+. |. +..+.+ .| +.+++|+.|++++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~l 336 (442)
T COG1061 258 EARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVL 336 (442)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 0000000 013678889999999998886 55 666665 34 45699999999999
Q ss_pred cccc--------CCcccccc-------cccEEEEccCC
Q psy18032 289 QVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 289 vaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
|++. +++..++- ..|+||+||.=
T Consensus 337 v~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~L 374 (442)
T COG1061 337 VTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGL 374 (442)
T ss_pred EEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhc
Confidence 9986 44444442 55788888754
No 102
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.32 E-value=3.4e-11 Score=95.79 Aligned_cols=108 Identities=42% Similarity=0.575 Sum_probs=86.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (333)
+++++.+|||+|||..+...+...... .+..+++|++|+..++.|..+.+...... +..+..+.++..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHh
Confidence 478999999999999999888887665 13468999999999999999999987655 67788888777666655555
Q ss_pred hCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 155 HASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 155 ~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
..+.+|+++|++.+...............++|
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~ii 108 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLI 108 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEE
Confidence 66799999999999887776554455566666
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.27 E-value=1.5e-11 Score=124.30 Aligned_cols=251 Identities=18% Similarity=0.191 Sum_probs=148.7
Q ss_pred CcHHHHhHHHHHhcC---C-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 60 PTPIQRKTIPLVLEG---R-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g---~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
+.+.|..++..+++. . .+++.||||.|||.+.+.++...+... .....+.+++.|++.+++++++.++......+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 488999999998875 3 688999999999999999999887774 22467999999999999999999998765544
Q ss_pred ceEEEEECCcchHHHHHH---------h-----hCCCCEEEECchHHHHHHHhcc-cc-ccC--chhhHH----------
Q psy18032 136 LQSTCLLGGDSMDNQFAR---------L-----HASPDIVVATPGRFLHIVVEME-LK-LSS--IQYTFK---------- 187 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~---------l-----~~~~~IlI~TP~rll~~l~~~~-~~-~~~--l~~lV~---------- 187 (333)
+.....+|.....-.... + .....+.++||-+......... .. +.. ...+|+
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 433322333221111000 0 0124566677766654221111 00 111 111111
Q ss_pred ----HHHHHhhccccceeeeecCCChHHHHHhhh-----cCCcEEEe--------CCC-------ceEEE----EE---e
Q psy18032 188 ----FVKELGKFTKLQSTCLLGGDSMDNQFARLH-----ASPDIVVA--------TPG-------RFLHI----VV---E 236 (333)
Q Consensus 188 ----~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~~--------t~~-------~i~~~----~~---~ 236 (333)
...-+.........++++|||+|+...+.. +...+... -+. .+... .. .
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 434 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELIS 434 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcch
Confidence 011111112246788999999998765542 11111111 000 11111 00 0
Q ss_pred cchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc-----chH----HHhhh-CCCCcccccccc-------CCccc
Q psy18032 237 MELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ----SVRKW-DPAKKKYVQVTD-------DTIPL 297 (333)
Q Consensus 237 ~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~----~l~~f-~~g~~~vLvaTd-------~~i~~ 297 (333)
...+...-+++.|||++.|.++++.|+ +.++..+|+ .|+ .+..+ ..+...|+|||- -+.+.
T Consensus 435 ~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~ 514 (733)
T COG1203 435 EEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDV 514 (733)
T ss_pred hhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCe
Confidence 011112225889999999999999998 335899998 232 23333 778999999994 44454
Q ss_pred ccc-----cccEEEEccCC
Q psy18032 298 VLE-----GRDVVAMARTG 311 (333)
Q Consensus 298 vi~-----~~~~~~~grtG 311 (333)
+|. ..-+||.||.+
T Consensus 515 mITe~aPidSLIQR~GRv~ 533 (733)
T COG1203 515 LITELAPIDSLIQRAGRVN 533 (733)
T ss_pred eeecCCCHHHHHHHHHHHh
Confidence 543 33678888777
No 104
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.15 E-value=6.2e-10 Score=110.21 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=106.0
Q ss_pred CCCcHHHHhHHHHHhcC----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 58 KIPTPIQRKTIPLVLEG----RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
..+++-|+.++..+.+. .-.++.+.||||||.+|+-.+-..+.. |.++|+|+|-.+|-.|+.+.|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-----GkqvLvLVPEI~Ltpq~~~rf~~r--- 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-----GKQVLVLVPEIALTPQLLARFKAR--- 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-----CCEEEEEeccccchHHHHHHHHHH---
Confidence 35688999999998776 569999999999999999888877776 789999999999999999999974
Q ss_pred CCceEEEEECCcchHHHH----HHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----------------HHHHHh
Q psy18032 134 TKLQSTCLLGGDSMDNQF----ARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------------FVKELG 193 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~----~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------------~i~~l~ 193 (333)
.|.+++.++++.+..+.. +.......|+|||-.-+. .-+++++++|+ ...|+.
T Consensus 269 Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 269 FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 457888888887655543 333446999999953322 34777888885 233333
Q ss_pred hcc--ccceeeeecCCChHHH
Q psy18032 194 KFT--KLQSTCLLGGDSMDNQ 212 (333)
Q Consensus 194 ~~~--~~~~~~l~~sAT~~~~ 212 (333)
-.. ..+.+++++|||-+-+
T Consensus 342 ~~Ra~~~~~pvvLgSATPSLE 362 (730)
T COG1198 342 VLRAKKENAPVVLGSATPSLE 362 (730)
T ss_pred HHHHHHhCCCEEEecCCCCHH
Confidence 222 2467889999997633
No 105
>KOG0950|consensus
Probab=99.14 E-value=1.1e-10 Score=115.29 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=117.9
Q ss_pred HHHHHHhCCCCCCcHHHHhHHH--HHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 48 VLKGVLKRGYKIPTPIQRKTIP--LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 48 l~~~l~~~g~~~~~~~Q~~~i~--~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
..-..+..|...+..+|.+|+. .++.++|.+..+||+.|||++.-+-++..+... ...++.+.|-.+.+++-..
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~----rr~~llilp~vsiv~Ek~~ 287 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR----RRNVLLILPYVSIVQEKIS 287 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH----hhceeEecceeehhHHHHh
Confidence 3333456789999999999974 588899999999999999999999988887652 4579999999999999999
Q ss_pred HHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHH----HhccccccCchhhHH-------------H
Q psy18032 126 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV----VEMELKLSSIQYTFK-------------F 188 (333)
Q Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l----~~~~~~~~~l~~lV~-------------~ 188 (333)
.+..++...|+.+...+|........ +.-++-|+|-|+-..++ +.+. ++.++++|+ .
T Consensus 288 ~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~--~~~~g~vvVdElhmi~d~~rg~~ 361 (1008)
T KOG0950|consen 288 ALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGR--LDFLGMVVVDELHMIGDKGRGAI 361 (1008)
T ss_pred hhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCC--ccccCcEEEeeeeeeeccccchH
Confidence 99999999999998888776654432 34679999999766444 3343 556666664 1
Q ss_pred HHH-Hhhcc----ccceeeeecCCChHH--HHHhhh
Q psy18032 189 VKE-LGKFT----KLQSTCLLGGDSMDN--QFARLH 217 (333)
Q Consensus 189 i~~-l~~~~----~~~~~~l~~sAT~~~--~v~~l~ 217 (333)
++. +.+++ ....|.+.+|||+++ .++.+.
T Consensus 362 lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L 397 (1008)
T KOG0950|consen 362 LELLLAKILYENLETSVQIIGMSATIPNNSLLQDWL 397 (1008)
T ss_pred HHHHHHHHHHhccccceeEeeeecccCChHHHHHHh
Confidence 111 11211 223678999999973 455543
No 106
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.13 E-value=3.1e-10 Score=116.92 Aligned_cols=96 Identities=23% Similarity=0.244 Sum_probs=78.4
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHH----HHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIP----LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~----~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
+.+.+.+.+...||+ ++|.|.+.+. .+.+|+++++.||||+|||++|++|++..... +.+++|.+||++|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~-----~~~vvi~t~t~~L 304 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT-----EKPVVISTNTKVL 304 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC-----CCeEEEEeCcHHH
Confidence 445777888888999 8999998666 56678999999999999999999999887652 4489999999999
Q ss_pred HHHHHH-HHHHHhccCC--ceEEEEECCc
Q psy18032 120 ALQTFK-FVKELGKFTK--LQSTCLLGGD 145 (333)
Q Consensus 120 ~~q~~~-~~~~~~~~~~--~~~~~~~g~~ 145 (333)
..|+.. .+..+.+..+ ++++.+.|+.
T Consensus 305 q~Ql~~~~~~~l~~~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 305 QSQLLEKDIPLLNEILNFKINAALIKGKS 333 (850)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcch
Confidence 999865 6776666555 7888887764
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.05 E-value=4.7e-10 Score=111.42 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=61.1
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc--------
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------- 300 (333)
++|||++++.++.+++.|. |+++..+|+ +.+.+++|+.|+++|||||+ +++..|+.
T Consensus 445 vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~ 524 (655)
T TIGR00631 445 VLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGF 524 (655)
T ss_pred EEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccC
Confidence 4899999999999999997 889999998 23456999999999999998 45554542
Q ss_pred ----cccEEEEccCC---CchhhHHHh
Q psy18032 301 ----GRDVVAMARTG---SGKTACFLF 320 (333)
Q Consensus 301 ----~~~~~~~grtG---~g~~~~~~l 320 (333)
..|+||+|||| .|+.+.|+-
T Consensus 525 p~~~~~~iqriGRagR~~~G~vi~~~~ 551 (655)
T TIGR00631 525 LRSERSLIQTIGRAARNVNGKVIMYAD 551 (655)
T ss_pred CCCHHHHHHHhcCCCCCCCCEEEEEEc
Confidence 35899999999 576555543
No 108
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.04 E-value=1.6e-09 Score=90.75 Aligned_cols=106 Identities=25% Similarity=0.298 Sum_probs=73.0
Q ss_pred CcHHHHhHHHHHhc-------CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 60 PTPIQRKTIPLVLE-------GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~-------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
|++.|.+++..+.+ .+++++.+|||||||.+++..+..... ++++++|+..|+.|..+.+..+..
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 79999999999885 588999999999999988865444422 799999999999999999976543
Q ss_pred cCCceEE------------EEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh
Q psy18032 133 FTKLQST------------CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 174 (333)
Q Consensus 133 ~~~~~~~------------~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~ 174 (333)
.. .... ..............-....+++++|...+......
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 128 (184)
T PF04851_consen 76 EK-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKE 128 (184)
T ss_dssp TS-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH
T ss_pred hh-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccc
Confidence 21 1110 01111111222223344688999999999877654
No 109
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.02 E-value=2.1e-09 Score=110.15 Aligned_cols=103 Identities=18% Similarity=0.073 Sum_probs=65.7
Q ss_pred CCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCc
Q psy18032 59 IPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 136 (333)
.|.|+|..+...++.. .-+|+.-..|.|||.-+.+.+...+... ...++|||||. .|..|-...+.+. .++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---~~~rvLIVvP~-sL~~QW~~El~~k---F~l 224 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---RAERVLILVPE-TLQHQWLVEMLRR---FNL 224 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---CCCcEEEEcCH-HHHHHHHHHHHHH---hCC
Confidence 3899999998877654 3589999999999988876665554442 23479999998 7888887777542 345
Q ss_pred eEEEEECCcchHHHHH---HhhCCCCEEEECchHHH
Q psy18032 137 QSTCLLGGDSMDNQFA---RLHASPDIVVATPGRFL 169 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~---~l~~~~~IlI~TP~rll 169 (333)
....+.++... .... ......+++|+|-+.+.
T Consensus 225 ~~~i~~~~~~~-~~~~~~~~pf~~~~~vI~S~~~l~ 259 (956)
T PRK04914 225 RFSLFDEERYA-EAQHDADNPFETEQLVICSLDFLR 259 (956)
T ss_pred CeEEEcCcchh-hhcccccCccccCcEEEEEHHHhh
Confidence 44443332211 1000 01113567777766554
No 110
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.00 E-value=1.7e-09 Score=110.27 Aligned_cols=87 Identities=26% Similarity=0.337 Sum_probs=71.5
Q ss_pred HhCCCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH-HHHH
Q psy18032 53 LKRGYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT-FKFV 127 (333)
Q Consensus 53 ~~~g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~-~~~~ 127 (333)
.-.||+ +++.|.+....+. +++.++++|+||+|||++|++|++... .+.++||++||++|+.|+ .+.+
T Consensus 240 ~~~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 240 ALLGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred ccCCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 334777 8999999555543 467899999999999999999988753 256899999999999999 5778
Q ss_pred HHHhccCCceEEEEECCcc
Q psy18032 128 KELGKFTKLQSTCLLGGDS 146 (333)
Q Consensus 128 ~~~~~~~~~~~~~~~g~~~ 146 (333)
..+.+..++++.++.|+.+
T Consensus 313 ~~l~~~~~~~~~~~kg~~~ 331 (820)
T PRK07246 313 KAIQEVFHIDCHSLKGPQN 331 (820)
T ss_pred HHHHHhcCCcEEEEECCcc
Confidence 8888888998888887743
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=3.1e-09 Score=106.96 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=80.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.|.++|.-.--.+.. .-|+.+.||=|||+++.+|+.-.... |.-+=|++..-.||.-=.+++..+..+.|+.|
T Consensus 138 ~~ydVQLiGgivLh~--G~IAEM~TGEGKTLvatlp~yLnAL~-----G~gVHvVTvNDYLA~RDaewm~p~y~flGLtV 210 (1025)
T PRK12900 138 VPYDVQLIGGIVLHS--GKISEMATGEGKTLVSTLPTFLNALT-----GRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSV 210 (1025)
T ss_pred cccchHHhhhHHhhc--CCccccCCCCCcchHhHHHHHHHHHc-----CCCcEEEeechHhhhhhHHHHHHHHHHhCCee
Confidence 377788766555554 46899999999999999999877666 44577888999999999999999999999999
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
.++..+.+..+.. -.-.|+|.+||..-+
T Consensus 211 g~i~~~~~~~~Rr--~aY~~DItYgTn~Ef 238 (1025)
T PRK12900 211 GVILNTMRPEERR--EQYLCDITYGTNNEF 238 (1025)
T ss_pred eeeCCCCCHHHHH--HhCCCcceecCCCcc
Confidence 9997766665532 334699999999654
No 112
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.91 E-value=5.9e-09 Score=97.54 Aligned_cols=68 Identities=29% Similarity=0.368 Sum_probs=53.8
Q ss_pred CCCCCcHHHHhHHHHHhcC-----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 56 GYKIPTPIQRKTIPLVLEG-----RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g-----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.|+ |+.-|-+||..+.+| +.-.+.|-||||||+...--+- .+ ..-+||++|.+.||-|.+..++.|
T Consensus 10 ~f~-PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~-~~-------~rPtLV~AhNKTLAaQLy~Efk~f 80 (663)
T COG0556 10 PFK-PAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIA-KV-------QRPTLVLAHNKTLAAQLYSEFKEF 80 (663)
T ss_pred CCC-CCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHH-Hh-------CCCeEEEecchhHHHHHHHHHHHh
Confidence 455 888999999998876 4678889999999975443322 22 225999999999999999999998
Q ss_pred hc
Q psy18032 131 GK 132 (333)
Q Consensus 131 ~~ 132 (333)
.-
T Consensus 81 FP 82 (663)
T COG0556 81 FP 82 (663)
T ss_pred Cc
Confidence 53
No 113
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.90 E-value=4.3e-08 Score=98.81 Aligned_cols=221 Identities=19% Similarity=0.125 Sum_probs=134.2
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH-HhccCCceEE
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE-LGKFTKLQST 139 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 139 (333)
+....+.+.++.+..-++++|+||||||.-.=.-+++.-. ..+....+.=|-|-=|..+.+.+.+ ++...|-.|.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 3455666666777778999999999999644444444322 2244677778999888888777765 4444454454
Q ss_pred EEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------------HHHHHhhccccceeeee
Q psy18032 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------------FVKELGKFTKLQSTCLL 204 (333)
Q Consensus 140 ~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------------~i~~l~~~~~~~~~~l~ 204 (333)
.-.-.++.. .....|-+.|.+.|+..+.... .++.+.++|+ ++.++....+.....+.
T Consensus 128 Y~iRfe~~~------s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 128 YSIRFESKV------SPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred EEEEeeccC------CCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 443333221 1257899999999998887543 3788888884 22222222333467899
Q ss_pred cCCChHHH-HHhhhc-CCcEEEeCCC-ceEEEEEec---ch-hhhhH--------------HHHhhcchhhHHHHHHHhc
Q psy18032 205 GGDSMDNQ-FARLHA-SPDIVVATPG-RFLHIVVEM---EL-KLSSI--------------QLSLTDFKQDTSRIALDLV 263 (333)
Q Consensus 205 ~sAT~~~~-v~~l~~-~~~i~~~t~~-~i~~~~~~~---~~-k~~~l--------------~lif~~~~~~~~~l~~~L~ 263 (333)
+|||+..+ +.+... .|.+.+.-.. .+.-+|... +. -...+ .++|.+-.++.++.++.|.
T Consensus 201 mSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~ 280 (845)
T COG1643 201 MSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLE 280 (845)
T ss_pred EecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHH
Confidence 99999644 666655 4444442211 133333111 11 00111 3778888888887777775
Q ss_pred C------CCcccccc------chHHHhhhCCCCcccccccc
Q psy18032 264 G------DSTEMIHK------QRQSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 264 g------~~~~~lh~------~r~~l~~f~~g~~~vLvaTd 292 (333)
. ..+.-+|| |.+.++--..|+-+|++||+
T Consensus 281 ~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATN 321 (845)
T COG1643 281 KAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATN 321 (845)
T ss_pred hccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEcc
Confidence 3 44556777 33333444555566999998
No 114
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.89 E-value=9.2e-09 Score=101.08 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=62.8
Q ss_pred HHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh-cc--CCceEEEEEC
Q psy18032 67 TIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG-KF--TKLQSTCLLG 143 (333)
Q Consensus 67 ~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~--~~~~~~~~~g 143 (333)
+...+.+++.+++.||||+|||++|++|++..+... .+.++||++||++|+.|+++.+..+. +. ..++++.+.|
T Consensus 9 i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkG 85 (636)
T TIGR03117 9 CLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPG 85 (636)
T ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEEC
Confidence 344455678899999999999999999999887631 25689999999999999999999887 43 3577778888
Q ss_pred Ccc
Q psy18032 144 GDS 146 (333)
Q Consensus 144 ~~~ 146 (333)
+.+
T Consensus 86 r~n 88 (636)
T TIGR03117 86 SQE 88 (636)
T ss_pred Ccc
Confidence 765
No 115
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.85 E-value=1.8e-08 Score=90.99 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=61.0
Q ss_pred CCCCCCcHHHHh----HHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhccc-CCceEEEEcccHHHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRK----TIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAAT-SGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 55 ~g~~~~~~~Q~~----~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+.|+ |+|.|.+ ++..+.+|.++++.||||+|||++|++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4566 6999999 555566789999999999999999999999876653221 234899999999999998888877
Q ss_pred Hh
Q psy18032 130 LG 131 (333)
Q Consensus 130 ~~ 131 (333)
+.
T Consensus 84 ~~ 85 (289)
T smart00489 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 116
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.85 E-value=1.8e-08 Score=90.99 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=61.0
Q ss_pred CCCCCCcHHHHh----HHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhccc-CCceEEEEcccHHHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRK----TIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAAT-SGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 55 ~g~~~~~~~Q~~----~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+.|+ |+|.|.+ ++..+.+|.++++.||||+|||++|++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4566 6999999 555566789999999999999999999999876653221 234899999999999998888877
Q ss_pred Hh
Q psy18032 130 LG 131 (333)
Q Consensus 130 ~~ 131 (333)
+.
T Consensus 84 ~~ 85 (289)
T smart00488 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.84 E-value=1.7e-08 Score=101.32 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=95.2
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|.. |.++|.-.--.+. +.-++.+.||+|||+++.+|++-.... |..+-+++|+..||.+-++.+..+..++
T Consensus 79 lGm~-~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~-----G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 79 MGMR-HFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALS-----GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred hCCC-cchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 4655 8888886654454 457899999999999999999887666 7789999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHH-HHHHhc------cccccCchhhH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEM------ELKLSSIQYTF 186 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll-~~l~~~------~~~~~~l~~lV 186 (333)
|+++.++.++.+.++..... .++|++||..-+- +.++.. ....+.+.+.|
T Consensus 151 Gl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aI 207 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAV 207 (913)
T ss_pred CCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeE
Confidence 99999998888776654443 3899999998762 333322 11236667666
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.69 E-value=1.4e-07 Score=92.71 Aligned_cols=105 Identities=20% Similarity=0.169 Sum_probs=91.0
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|+. |+++|.-..-.++.|. ++.+.||+|||+++.+|+...... |..+-+++|+..||.+-++.+..+..++
T Consensus 75 lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~-----G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 75 LGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ-----GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred cCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc-----CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 4666 8999999998888874 789999999999999999988776 7789999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
|+++.++.++.+.++..... .|+|.++|..-+-
T Consensus 147 GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~g 179 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAY--ACDVTYASVNEIG 179 (764)
T ss_pred CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccc
Confidence 99999999888776544333 5899999997653
No 119
>KOG0951|consensus
Probab=98.68 E-value=6e-08 Score=98.47 Aligned_cols=106 Identities=25% Similarity=0.411 Sum_probs=86.1
Q ss_pred CCCCcHHHHhHHHHHhcCC-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH-HhccC
Q psy18032 57 YKIPTPIQRKTIPLVLEGR-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE-LGKFT 134 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~g~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~ 134 (333)
|....|+|.++++.+.+.+ ++++.+|+|||||+|+-++++. +....++++++|..+.+..+++.+.+ +....
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 3445899999999988765 5999999999999999999887 23356999999999999999988885 66667
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~ 171 (333)
|..++.+.|..+.+-. +.+..+++|+||+++-.+
T Consensus 1215 G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l 1248 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL 1248 (1674)
T ss_pred CceEEecCCccccchH---HhhhcceEEechhHHHHH
Confidence 7888888777766542 334568999999998766
No 120
>KOG0949|consensus
Probab=98.64 E-value=4.4e-08 Score=97.24 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=102.2
Q ss_pred CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
+|. |..+|.+.+-.+-.+++++++|||.+|||.+-...+=..+... ...-+|+++||.+|++|+...........-
T Consensus 509 dF~-Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes---D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 509 DFC-PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES---DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred ccC-CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc---CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 355 8999999999999999999999999999986665554444442 244799999999999999887776432222
Q ss_pred c-eEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh---ccccccCchhhHH-HHHHHhhc----------cccce
Q psy18032 136 L-QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE---MELKLSSIQYTFK-FVKELGKF----------TKLQS 200 (333)
Q Consensus 136 ~-~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~---~~~~~~~l~~lV~-~i~~l~~~----------~~~~~ 200 (333)
. +...+.|....+- +.-.-+|+|+|+-|+.+..++.. ..-...+++++|. ++.-+++. .-..+
T Consensus 585 ~~rg~sl~g~ltqEY--sinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~C 662 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEY--SINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPC 662 (1330)
T ss_pred cccchhhHhhhhHHh--cCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCC
Confidence 2 2222223222211 11122699999999999998877 4456888999984 22222211 11367
Q ss_pred eeeecCCChH
Q psy18032 201 TCLLGGDSMD 210 (333)
Q Consensus 201 ~~l~~sAT~~ 210 (333)
.++..|||+.
T Consensus 663 P~L~LSATig 672 (1330)
T KOG0949|consen 663 PFLVLSATIG 672 (1330)
T ss_pred CeeEEecccC
Confidence 7889999984
No 121
>KOG0953|consensus
Probab=98.57 E-value=4.7e-08 Score=91.86 Aligned_cols=194 Identities=16% Similarity=0.157 Sum_probs=115.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
.+=++-+|||.||||.- +++++.. ...+++--|.|.||.++++.++. .|+.|..++|.+.....-.
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~-----aksGvycGPLrLLA~EV~~r~na----~gipCdL~TGeE~~~~~~~- 256 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKS-----AKSGVYCGPLRLLAHEVYDRLNA----LGIPCDLLTGEERRFVLDN- 256 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhh-----hccceecchHHHHHHHHHHHhhh----cCCCccccccceeeecCCC-
Confidence 34588899999999964 4566665 34688999999999999999998 5788888888764433211
Q ss_pred hhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccce-----ee----------eecCCChHHHHHhhh-
Q psy18032 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQS-----TC----------LLGGDSMDNQFARLH- 217 (333)
Q Consensus 154 l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~-----~~----------l~~sAT~~~~v~~l~- 217 (333)
.+.++.+-||-|...--.. ....| +|+|.-+-...+ +. +++-...-+.++++.
T Consensus 257 -~~~a~hvScTVEM~sv~~~--------yeVAV--iDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k 325 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMVSVNTP--------YEVAV--IDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILK 325 (700)
T ss_pred -CCcccceEEEEEEeecCCc--------eEEEE--ehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHh
Confidence 1235666666543221000 11111 444433221111 00 111112223344443
Q ss_pred -cCCcEEEeCCCceEEEEEecc--hhhhhH---HHHhhcchhhHHHHHHHhc---CCCcccccc------chHHHhhhCC
Q psy18032 218 -ASPDIVVATPGRFLHIVVEME--LKLSSI---QLSLTDFKQDTSRIALDLV---GDSTEMIHK------QRQSVRKWDP 282 (333)
Q Consensus 218 -~~~~i~~~t~~~i~~~~~~~~--~k~~~l---~lif~~~~~~~~~l~~~L~---g~~~~~lh~------~r~~l~~f~~ 282 (333)
.+.++.+-.-.|+.-+.+... .+++.+ -.|+|.++++...+...+. +.+++++.| +.+.-..|.+
T Consensus 326 ~TGd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd 405 (700)
T KOG0953|consen 326 MTGDDVEVREYERLSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFND 405 (700)
T ss_pred hcCCeeEEEeecccCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCC
Confidence 233555555555544444321 122222 2678889999988887775 455777776 4556688966
Q ss_pred --CCcccccccc
Q psy18032 283 --AKKKYVQVTD 292 (333)
Q Consensus 283 --g~~~vLvaTd 292 (333)
++++||||||
T Consensus 406 ~~~e~dvlVAsD 417 (700)
T KOG0953|consen 406 PSNECDVLVASD 417 (700)
T ss_pred CCCccceEEeec
Confidence 9999999999
No 122
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.51 E-value=5.7e-07 Score=90.32 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=72.5
Q ss_pred CcHHHHhHHHHHhcC----------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEG----------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g----------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
|+..|.+++..+... +..+++.+||||||++.+..+...+.. .+.+++|||+|..+|..|..+.+..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~---~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL---LKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh---cCCCeEEEEECcHHHHHHHHHHHHh
Confidence 688899999886432 469999999999998777665444322 2367899999999999999999998
Q ss_pred HhccCCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHH
Q psy18032 130 LGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIV 172 (333)
Q Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l 172 (333)
++.. .. .+..+...-...+.+ ...|+|+|...+...+
T Consensus 316 ~~~~-~~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~ 353 (667)
T TIGR00348 316 LQKD-CA-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKL 353 (667)
T ss_pred hCCC-CC-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhH
Confidence 6531 01 111222222233333 4689999999987643
No 123
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.48 E-value=7.3e-07 Score=92.77 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=64.5
Q ss_pred CCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH-HHHH
Q psy18032 56 GYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF-VKEL 130 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~-~~~~ 130 (333)
||+ ++|-|.+.+..+. .++.+++.||||+|||++|++|++..... .+.+++|-++|+.|..|+.+. +..+
T Consensus 255 ~~e-~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~----~~~~vvIsT~T~~LQ~Ql~~kDiP~L 329 (928)
T PRK08074 255 KYE-KREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK----KEEPVVISTYTIQLQQQLLEKDIPLL 329 (928)
T ss_pred CCc-CCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc----cCCeEEEEcCCHHHHHHHHHhhHHHH
Confidence 676 8999999666544 46789999999999999999999876543 256899999999999998663 3333
Q ss_pred hcc--CCceEEEEECCc
Q psy18032 131 GKF--TKLQSTCLLGGD 145 (333)
Q Consensus 131 ~~~--~~~~~~~~~g~~ 145 (333)
.+. .+++++++-|..
T Consensus 330 ~~~~~~~~~~~~lKGr~ 346 (928)
T PRK08074 330 QKIFPFPVEAALLKGRS 346 (928)
T ss_pred HHHcCCCceEEEEEccc
Confidence 332 346777766653
No 124
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.40 E-value=1.1e-05 Score=71.51 Aligned_cols=130 Identities=19% Similarity=0.230 Sum_probs=95.2
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
..|+. |+++|.-++=.+..|+ +++..||=|||++..+|+.-.... |..+=|++.+..||..=++.+..+.+.
T Consensus 73 ~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-----G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 73 TLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-----GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-----SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-----cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 45666 9999999998887766 999999999999999888877666 667999999999999999999999999
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHH-HHHHhcc----c--cccCchhhHHHHHHHhhc
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEME----L--KLSSIQYTFKFVKELGKF 195 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll-~~l~~~~----~--~~~~l~~lV~~i~~l~~~ 195 (333)
+|+.+....++.+..+..+.. .++|+++|...+. +.+.... . ..+...+++ +|+...+
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~i--vDEvDs~ 209 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAI--VDEVDSI 209 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEE--ECTHHHH
T ss_pred hhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEE--EeccceE
Confidence 999999999998866543333 3679999998876 4444321 1 134556666 4444443
No 125
>KOG0920|consensus
Probab=98.36 E-value=6e-06 Score=83.57 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=136.7
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH-HhccCCceEE
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE-LGKFTKLQST 139 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 139 (333)
+..+.+.+.++.+.+-++++|.||+|||.=.---++....... .....++--|.|--|..+++++.. .+...|-.|.
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 6678888888999999999999999999755544555544322 455677777999889888887764 3334454444
Q ss_pred EEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------------HHHHHhhccc--cceeeeec
Q psy18032 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------------FVKELGKFTK--LQSTCLLG 205 (333)
Q Consensus 140 ~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------------~i~~l~~~~~--~~~~~l~~ 205 (333)
.-.+..+... ....+++||-+-|+..+.. .-.+.++..+|+ ++--+..+++ ....++++
T Consensus 253 Yqvrl~~~~s------~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILM 325 (924)
T KOG0920|consen 253 YQVRLESKRS------RETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILM 325 (924)
T ss_pred EEEeeecccC------CceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEe
Confidence 4343333222 1367999999999988876 445677777774 1111222222 46788999
Q ss_pred CCChHHHHHh-h-hcCCcEEEe--CCC------------------ceEEEEE--------------ecchhhhh------
Q psy18032 206 GDSMDNQFAR-L-HASPDIVVA--TPG------------------RFLHIVV--------------EMELKLSS------ 243 (333)
Q Consensus 206 sAT~~~~v~~-l-~~~~~i~~~--t~~------------------~i~~~~~--------------~~~~k~~~------ 243 (333)
|||+..+.-. . ...|.+.+. |.+ .-.+... +.+.+.+.
T Consensus 326 SAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~ 405 (924)
T KOG0920|consen 326 SATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIE 405 (924)
T ss_pred eeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHH
Confidence 9999754322 2 223333331 111 0000000 00011111
Q ss_pred ---------HHHHhhcchhhHHHHHHHhc------C---CCcccccc------chHHHhhhCCCCcccccccc
Q psy18032 244 ---------IQLSLTDFKQDTSRIALDLV------G---DSTEMIHK------QRQSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 244 ---------l~lif~~~~~~~~~l~~~L~------g---~~~~~lh~------~r~~l~~f~~g~~~vLvaTd 292 (333)
-.+||.+.-.+...+.+.|. + +-...+|+ |+.....--.|.-+|++||.
T Consensus 406 ~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 406 YIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred hcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 13677788888888887773 1 33457777 44445777889999999997
No 126
>KOG0922|consensus
Probab=98.32 E-value=7.2e-06 Score=79.19 Aligned_cols=218 Identities=18% Similarity=0.200 Sum_probs=124.2
Q ss_pred HHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH-HHhccCCceEEEE
Q psy18032 63 IQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK-ELGKFTKLQSTCL 141 (333)
Q Consensus 63 ~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~ 141 (333)
.-.+.+..+-+.+-+++.|.||||||. ++| +.+.+..-...+...+--|-|-=|..+.++.. +++...|-.|...
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 344567777777889999999999995 333 33332211223346677788888887766655 4555556566555
Q ss_pred ECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------------HHHHHhhccc--cceeeeecCC
Q psy18032 142 LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------------FVKELGKFTK--LQSTCLLGGD 207 (333)
Q Consensus 142 ~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------------~i~~l~~~~~--~~~~~l~~sA 207 (333)
..-.+... ....|.+.|-+.|+.-+... -.++...++++ .+--++++.. ....++.+||
T Consensus 131 IRFed~ts------~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSA 203 (674)
T KOG0922|consen 131 IRFEDSTS------KDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSA 203 (674)
T ss_pred EEecccCC------CceeEEEecchHHHHHHhcC-CccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 43333222 14679999999998655432 23555555553 1111223332 2346889999
Q ss_pred ChH-HHHHhhhcCCcEEEeCCCce---EEEEEec-chhh-----h---hH--------HHHhhcchhhHHHHHHHhcC--
Q psy18032 208 SMD-NQFARLHASPDIVVATPGRF---LHIVVEM-ELKL-----S---SI--------QLSLTDFKQDTSRIALDLVG-- 264 (333)
Q Consensus 208 T~~-~~v~~l~~~~~i~~~t~~~i---~~~~~~~-~~k~-----~---~l--------~lif~~~~~~~~~l~~~L~g-- 264 (333)
|+. +.+.+.-++..++. .|||. .-++... ..+. . .+ .++|..-.++.+..++.|..
T Consensus 204 Tlda~kfS~yF~~a~i~~-i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~ 282 (674)
T KOG0922|consen 204 TLDAEKFSEYFNNAPILT-IPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERA 282 (674)
T ss_pred eecHHHHHHHhcCCceEe-ecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 996 34455544433332 34542 2222221 1000 0 00 27788888888888876641
Q ss_pred --CC------cccccc---chHHHhhh---CCCCcccccccc
Q psy18032 265 --DS------TEMIHK---QRQSVRKW---DPAKKKYVQVTD 292 (333)
Q Consensus 265 --~~------~~~lh~---~r~~l~~f---~~g~~~vLvaTd 292 (333)
.. .-.+|| .++.+.-| -.|.-+|++||+
T Consensus 283 ~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTN 324 (674)
T KOG0922|consen 283 KSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTN 324 (674)
T ss_pred hhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcc
Confidence 11 134666 33334444 558999999997
No 127
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.30 E-value=5e-06 Score=83.99 Aligned_cols=85 Identities=29% Similarity=0.318 Sum_probs=63.9
Q ss_pred CCCCCcHHHHhHHHHHh---cC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH-H
Q psy18032 56 GYKIPTPIQRKTIPLVL---EG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF-K 125 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~---~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~-~ 125 (333)
||+ +++-|.+.+..+. .+ +.+++.||||+|||++|++|++-.... .+.+++|-+.|..|-.|+. +
T Consensus 23 ~~e-~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~----~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 23 GFI-PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA----EKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred CCC-cCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH----cCCeEEEEcCCHHHHHHHHhh
Confidence 777 8999999776655 33 568999999999999999999876554 2568999999999999985 4
Q ss_pred HHHHHhccC--CceEEEEECCc
Q psy18032 126 FVKELGKFT--KLQSTCLLGGD 145 (333)
Q Consensus 126 ~~~~~~~~~--~~~~~~~~g~~ 145 (333)
.+-.+.+.+ .++++++-|..
T Consensus 98 DlP~l~~~l~~~~~~~llKGr~ 119 (697)
T PRK11747 98 DLPLLLKISGLDFKFTLAKGRG 119 (697)
T ss_pred hhhHHHHHcCCCceEEEEcCcc
Confidence 444444444 45566555554
No 128
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.24 E-value=5.8e-06 Score=83.07 Aligned_cols=122 Identities=18% Similarity=0.176 Sum_probs=94.2
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|.. |.++|.-.--.+. +.-++.+.||-|||+++.+|+.-.... |..+-|++++..||..-.+++..+.+++
T Consensus 82 lG~r-~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~-----GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 82 LGMR-HFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALT-----GKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred hCCC-cchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhc-----CCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 4666 8888877665554 457999999999999999999877665 5679999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-----HHHHHh--ccccccCchhhH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-----LHIVVE--MELKLSSIQYTF 186 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-----l~~l~~--~~~~~~~l~~lV 186 (333)
|+.|.++.++.+..+.. ..-.|+|+++|+..+ .+.+.. .....+.+.|.+
T Consensus 154 GLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faI 210 (939)
T PRK12902 154 GLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCV 210 (939)
T ss_pred CCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEE
Confidence 99999998877665533 334699999999877 344432 122345555555
No 129
>KOG4150|consensus
Probab=98.23 E-value=1.4e-06 Score=82.43 Aligned_cols=259 Identities=12% Similarity=0.002 Sum_probs=156.9
Q ss_pred HHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 50 KGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 50 ~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+.+..+--+....+|.+++..+..|+++++.-.|.+||++||.+.....+... .....+++.|+.++++++.+.+.-
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC---HATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC---cccceecchhHHHHhhccCCceEE
Confidence 34455666778899999999999999999999999999999999988876653 234688999999999987665443
Q ss_pred Hhc-cCCce--EEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcccccc----CchhhHH---------------
Q psy18032 130 LGK-FTKLQ--STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS----SIQYTFK--------------- 187 (333)
Q Consensus 130 ~~~-~~~~~--~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~----~l~~lV~--------------- 187 (333)
... ....+ ++-.+.+.+..+...-.+.+.+++++.|.......--+..+.+ ++.+.+.
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 211 11222 3334555555555555667899999999877644332222211 1122221
Q ss_pred -HHHHHhhcc-----ccceeeeecCCChHHHHHhh---hc--CCcEE--EeCCCceEEEEEecc--------hhhhhH--
Q psy18032 188 -FVKELGKFT-----KLQSTCLLGGDSMDNQFARL---HA--SPDIV--VATPGRFLHIVVEME--------LKLSSI-- 244 (333)
Q Consensus 188 -~i~~l~~~~-----~~~~~~l~~sAT~~~~v~~l---~~--~~~i~--~~t~~~i~~~~~~~~--------~k~~~l-- 244 (333)
.+..+.++. ....|++-+++|+...++.+ .+ ....+ -++|..-.+++.... .+...+
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHH
Confidence 222222221 35788888999986555433 22 12222 245655555554321 111111
Q ss_pred --------------HHHhhcchhhHHHHHHHhc---------------CCCccccccchHHH-hhhCCCCcccccccc--
Q psy18032 245 --------------QLSLTDFKQDTSRIALDLV---------------GDSTEMIHKQRQSV-RKWDPAKKKYVQVTD-- 292 (333)
Q Consensus 245 --------------~lif~~~~~~~~~l~~~L~---------------g~~~~~lh~~r~~l-~~f~~g~~~vLvaTd-- 292 (333)
.+.||..++-||-+-..-+ .|+-.++-.+|+.+ .+.-.|+..-++||+
T Consensus 514 ~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNAL 593 (1034)
T KOG4150|consen 514 VSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNAL 593 (1034)
T ss_pred HHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchh
Confidence 2558888888776643222 22222222345444 666778999999997
Q ss_pred ------CCcccccc-------cccEEEEccCC
Q psy18032 293 ------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 293 ------~~i~~vi~-------~~~~~~~grtG 311 (333)
..++.|+- +..-|..||+|
T Consensus 594 ELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAG 625 (1034)
T KOG4150|consen 594 ELGIDIGHLDAVLHLGFPGSIANLWQQAGRAG 625 (1034)
T ss_pred hhccccccceeEEEccCchhHHHHHHHhcccc
Confidence 23333442 32667899999
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.19 E-value=7.2e-06 Score=82.42 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=85.6
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|+. |+++|.-..=.+ .+.-++.+.||.|||+++.+|+.-.... |..+-|++++..||.+-++++..+.+++
T Consensus 73 lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~-----G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT-----GKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred hCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc-----CCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 4777 889998776444 4568999999999999999999655444 5679999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
|+.+.++.++.+..+.... -.++|.++|..-+
T Consensus 145 GLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~ 176 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKKN--YLKDITYVTNSEL 176 (870)
T ss_pred CCceeeeCCCCChHHHHHh--cCCCCEecCCccc
Confidence 9999999888877664333 3489999999644
No 131
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.17 E-value=6.2e-06 Score=83.22 Aligned_cols=74 Identities=27% Similarity=0.349 Sum_probs=61.4
Q ss_pred HhCCCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 53 LKRGYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 53 ~~~g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
..+...+|++.|.+.+..+. .++.+++.||||+|||++|++|++...... +..++|.++|+.|..|..+...
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~----~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE----GKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc----CCcEEEECCCHHHHHHHHHhhc
Confidence 34455569999999886644 355699999999999999999999987662 4689999999999999998887
Q ss_pred HH
Q psy18032 129 EL 130 (333)
Q Consensus 129 ~~ 130 (333)
.+
T Consensus 85 ~~ 86 (654)
T COG1199 85 PI 86 (654)
T ss_pred ch
Confidence 75
No 132
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.08 E-value=4.1e-07 Score=91.10 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=59.7
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc--------
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------- 300 (333)
++|||++++.++++++.|. |+++..+|+ +.+.++.|+.|++++||||+ +++..|+.
T Consensus 449 viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~ 528 (652)
T PRK05298 449 VLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGF 528 (652)
T ss_pred EEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCccccc
Confidence 5889999999999999997 889999998 33567999999999999998 44444443
Q ss_pred ----cccEEEEccCC---CchhhHHH
Q psy18032 301 ----GRDVVAMARTG---SGKTACFL 319 (333)
Q Consensus 301 ----~~~~~~~grtG---~g~~~~~~ 319 (333)
..|+||+|||| .|+++.|+
T Consensus 529 ~~~~~~yiqr~GR~gR~~~G~~i~~~ 554 (652)
T PRK05298 529 LRSERSLIQTIGRAARNVNGKVILYA 554 (652)
T ss_pred CCCHHHHHHHhccccCCCCCEEEEEe
Confidence 24999999999 45544443
No 133
>PF13245 AAA_19: Part of AAA domain
Probab=98.07 E-value=2.2e-05 Score=55.92 Aligned_cols=60 Identities=30% Similarity=0.407 Sum_probs=42.1
Q ss_pred HHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 67 TIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 67 ~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
++...+.+.+ +++.||+|||||....--+...+...... +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4453333555 55599999999976665555555322222 568999999999999998887
No 134
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=1.7e-05 Score=80.61 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=63.4
Q ss_pred CCCCCCcHHHHhHHHHHhc----CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRKTIPLVLE----GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
+.|+.++|.|.+.+..+.+ |.+.++.||||+|||+|.+.|++......+ ..++.++.+.|..=..|..+.++++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--ccccEEEEcccchHHHHHHHHHHhh
Confidence 4678779999988777554 788999999999999999999999876522 2368999999999999999999985
Q ss_pred h
Q psy18032 131 G 131 (333)
Q Consensus 131 ~ 131 (333)
.
T Consensus 84 ~ 84 (705)
T TIGR00604 84 M 84 (705)
T ss_pred h
Confidence 3
No 135
>KOG0923|consensus
Probab=98.02 E-value=5.2e-05 Score=73.23 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=87.3
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcccHHHHHHHHHHHH-HHhccCCceE
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTRELALQTFKFVK-ELGKFTKLQS 138 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~ 138 (333)
.+.-.+.+.++...+=+++.|.||||||. ++| +.+.... .+.|.+.=+--|-|--|..+..+.. +++..+|-.|
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 34455666777777779999999999995 455 3343322 1223345566799988988866555 4444444333
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------------HHHHHhhccccceeee
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------------FVKELGKFTKLQSTCL 203 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------------~i~~l~~~~~~~~~~l 203 (333)
..-..-.+... +..-|-+.|-+.|+.-+.. ..++.+...+++ .+.|+.++- ....++
T Consensus 343 GYsIRFEdcTS------ekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R-pdLKll 414 (902)
T KOG0923|consen 343 GYSIRFEDCTS------EKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR-PDLKLL 414 (902)
T ss_pred ceEEEeccccC------cceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC-CcceEE
Confidence 32221111111 1345778999988854432 233444444442 455555533 345678
Q ss_pred ecCCChH-HHHHhhhcCCcEEE
Q psy18032 204 LGGDSMD-NQFARLHASPDIVV 224 (333)
Q Consensus 204 ~~sAT~~-~~v~~l~~~~~i~~ 224 (333)
..|||+. +....+..+..|..
T Consensus 415 IsSAT~DAekFS~fFDdapIF~ 436 (902)
T KOG0923|consen 415 ISSATMDAEKFSAFFDDAPIFR 436 (902)
T ss_pred eeccccCHHHHHHhccCCcEEe
Confidence 9999996 44555554444443
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.01 E-value=1.3e-05 Score=80.08 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=84.1
Q ss_pred EECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH----h
Q psy18032 79 AMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR----L 154 (333)
Q Consensus 79 ~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----l 154 (333)
..+.+|||||..|+-.+-..+.. |.++||++|...|..|+.+.++... .+..++.++++.+..+..+. .
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~-----Gk~vLvLvPEi~lt~q~~~rl~~~f--~~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRA-----GRGALVVVPDQRDVDRLEAALRALL--GAGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHc-----CCeEEEEecchhhHHHHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHHHh
Confidence 33446999999999887777666 7789999999999999999999743 12668888888876655433 2
Q ss_pred hCCCCEEEECchHHHHHHHhccccccCchhhHH----------------HHHHHhhcc--ccceeeeecCCChHHHH
Q psy18032 155 HASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------------FVKELGKFT--KLQSTCLLGGDSMDNQF 213 (333)
Q Consensus 155 ~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------------~i~~l~~~~--~~~~~~l~~sAT~~~~v 213 (333)
...++|+|||-.-+. .-+++++++|+ ...++.... ..+..++++|||-+-+.
T Consensus 238 ~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 238 RGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred CCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 334899999953322 34667777775 122222111 24677889999976443
No 137
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.81 E-value=7e-05 Score=64.93 Aligned_cols=69 Identities=22% Similarity=0.361 Sum_probs=50.4
Q ss_pred CcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhh----hcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKT----HAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~----~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+++.|.+|+..+++..+ .+++||+|||||.... .++..+.. .....+.++|+++|+..-+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999999998 9999999999995333 33333311 1123467899999999999999998887
No 138
>KOG0343|consensus
Probab=97.76 E-value=6.2e-06 Score=77.92 Aligned_cols=41 Identities=44% Similarity=0.651 Sum_probs=39.4
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~~ 333 (333)
..||+.+++.++.+.++||||||+||++|+||++++..|.|
T Consensus 98 ~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~ 138 (758)
T KOG0343|consen 98 DTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP 138 (758)
T ss_pred hhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC
Confidence 68999999999999999999999999999999999999975
No 139
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.76 E-value=0.00015 Score=65.59 Aligned_cols=94 Identities=16% Similarity=0.088 Sum_probs=57.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (333)
+..+++-..|+|||+..+..+..............+||++|. .+..+-.+.+.++......++....|+..........
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 104 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQ 104 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSS
T ss_pred CCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccccccccccccccccccccc
Confidence 568899999999997766555432222111122259999999 8888999999998754466666666665222222223
Q ss_pred hCCCCEEEECchHHH
Q psy18032 155 HASPDIVVATPGRFL 169 (333)
Q Consensus 155 ~~~~~IlI~TP~rll 169 (333)
....+++|+|.+.+.
T Consensus 105 ~~~~~vvi~ty~~~~ 119 (299)
T PF00176_consen 105 LPKYDVVITTYETLR 119 (299)
T ss_dssp CCCSSEEEEEHHHHH
T ss_pred cccceeeeccccccc
Confidence 346899999998888
No 140
>KOG0952|consensus
Probab=97.67 E-value=8.6e-06 Score=82.07 Aligned_cols=124 Identities=21% Similarity=0.284 Sum_probs=95.3
Q ss_pred CCCCcHHHHhHHHHHhc-CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 57 YKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
+..+.|+|.+.+-.+.. ..++++-+|||+|||.+|.+++...+... .+.++++++|..+|+....+.+.......|
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~---p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY---PGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC---CCccEEEEcCCchhhcccccchhhhcccCC
Confidence 44667788877766544 46799999999999999999998887763 356899999999999999999987655568
Q ss_pred ceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc--cccccCchhhH
Q psy18032 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM--ELKLSSIQYTF 186 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~--~~~~~~l~~lV 186 (333)
++++-+.|+...+- ..+ ..++++|+||++.-...+.. .-.+.+++.+|
T Consensus 1002 ~k~ie~tgd~~pd~--~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv 1051 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDV--KAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIV 1051 (1230)
T ss_pred ceeEeccCccCCCh--hhe-ecCceEEcccccccCccccccchhhhcccccee
Confidence 99999998887652 222 25789999999987766632 23455666666
No 141
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.65 E-value=6.2e-05 Score=59.80 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=57.2
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (333)
+|+=.++-..+|+|||--.+.-++..... ++.++|||.|||.++.++.+.++. ..++.. ......
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~----~~~rvLvL~PTRvva~em~~aL~~----~~~~~~---t~~~~~---- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK----RRLRVLVLAPTRVVAEEMYEALKG----LPVRFH---TNARMR---- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH----TT--EEEEESSHHHHHHHHHHTTT----SSEEEE---STTSS-----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH----ccCeEEEecccHHHHHHHHHHHhc----CCcccC---ceeeec----
Confidence 45557888999999998776666654444 377999999999999999998875 233221 111100
Q ss_pred HhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 153 ~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
....+.-|=+.|-.-+...+.+ .....+..++|
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II 100 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVII 100 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEE
T ss_pred cccCCCcccccccHHHHHHhcC-cccccCccEEE
Confidence 1122344566676666655544 33455666666
No 142
>KOG0330|consensus
Probab=97.61 E-value=3.4e-05 Score=70.10 Aligned_cols=39 Identities=41% Similarity=0.663 Sum_probs=36.0
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNF 331 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~ 331 (333)
..||.++++.++.+.+.||||||+||+||+|++++....
T Consensus 90 ~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~ 128 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK 128 (476)
T ss_pred hhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC
Confidence 679999999999999999999999999999999987543
No 143
>KOG0924|consensus
Probab=97.60 E-value=0.00075 Score=65.72 Aligned_cols=99 Identities=21% Similarity=0.199 Sum_probs=58.8
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH-HhccCCceEE
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE-LGKFTKLQST 139 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 139 (333)
-..+.+.+..+...+=+++.+.||||||.- +| +.+....-...+..-+--|.|.-|..+++.... ++-.+|-.|.
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 446677777777777799999999999953 22 333332111223444555899989888877764 4333444443
Q ss_pred EEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 140 CLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 140 ~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
..+.-.+... ....|-+.|-+-|+
T Consensus 434 YsIRFEdvT~------~~T~IkymTDGiLL 457 (1042)
T KOG0924|consen 434 YSIRFEDVTS------EDTKIKYMTDGILL 457 (1042)
T ss_pred eEEEeeecCC------CceeEEEeccchHH
Confidence 3332221111 13457788888777
No 144
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.54 E-value=0.0005 Score=69.36 Aligned_cols=105 Identities=19% Similarity=0.131 Sum_probs=86.4
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|.. |+++|.-.--.+..| -++.+.||=|||+++.+|+.-.... |..+-|++..-.||..=.+++..+..++
T Consensus 75 lG~r-~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~-----GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 75 LGKR-PYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT-----GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred hCCC-cCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc-----CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 4665 899998888777666 4899999999999999998765555 5568899999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
|+.|.+...+.+..+..... .|+|.++|...+-
T Consensus 147 GLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~g 179 (925)
T PRK12903 147 GLSVGINKANMDPNLKREAY--ACDITYSVHSELG 179 (925)
T ss_pred CCceeeeCCCCChHHHHHhc--cCCCeeecCcccc
Confidence 99999998877666543332 5899999997654
No 145
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.49 E-value=0.00037 Score=63.38 Aligned_cols=70 Identities=27% Similarity=0.227 Sum_probs=54.2
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
+|+-|.+++.. ...+++|.|+.|||||.+.+--+...+.... -...+.|++++|+..+.++.+++.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 47889999988 6679999999999999987776666665532 2245799999999999999999998543
No 146
>KOG1802|consensus
Probab=97.47 E-value=0.00029 Score=68.31 Aligned_cols=85 Identities=15% Similarity=0.090 Sum_probs=69.7
Q ss_pred HHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 51 GVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 51 ~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.+...|+.+++..|..|..+++...=.|++||+|+|||..-.--+.+.+.. .+..+|+.+|+---+.|+.+.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh~- 476 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIHK- 476 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh----cCCceEEEcccchhHHHHHHHHHh-
Confidence 445567888999999999999998889999999999997666555555544 356799999999999999999997
Q ss_pred hccCCceEEEEEC
Q psy18032 131 GKFTKLQSTCLLG 143 (333)
Q Consensus 131 ~~~~~~~~~~~~g 143 (333)
+|++++-+..
T Consensus 477 ---tgLKVvRl~a 486 (935)
T KOG1802|consen 477 ---TGLKVVRLCA 486 (935)
T ss_pred ---cCceEeeeeh
Confidence 6788776654
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=97.46 E-value=2e-05 Score=56.31 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=39.1
Q ss_pred cCCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCCC
Q psy18032 263 VGDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTGS 312 (333)
Q Consensus 263 ~g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG~ 312 (333)
.|+++..+|| +.+.+++|.+++..+|+||+ +++..|+. ..|.|++||+|.
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R 76 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGR 76 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSST
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCC
Confidence 3899999998 33566999999999999998 34444553 458999999983
No 148
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.45 E-value=0.00059 Score=67.97 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=81.4
Q ss_pred CCcHHHHhHHHHHhc----CCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 59 IPTPIQRKTIPLVLE----GRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~----g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.|+..|..||..+.+ |++ +|+++.||+|||..++ +++.++.+.. .-.++|+|+-.++|+.|-+..+..+.-.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~--~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSG--WVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcc--hhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 588999999887665 544 9999999999996543 4556655532 2458999999999999999998886432
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-----cccccCchhhHH
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-----ELKLSSIQYTFK 187 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-----~~~~~~l~~lV~ 187 (333)
+-.+..+.+.. .. ..++|.++|-..+...+... .+......++|+
T Consensus 242 -~~~~n~i~~~~-~~-------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvI 291 (875)
T COG4096 242 -GTKMNKIEDKK-GD-------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVI 291 (875)
T ss_pred -ccceeeeeccc-CC-------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEe
Confidence 22222222211 11 15789999999988777655 345555677774
No 149
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.36 E-value=0.00098 Score=56.71 Aligned_cols=63 Identities=29% Similarity=0.363 Sum_probs=45.5
Q ss_pred CCcHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
++++-|.+++..++...+ .+++||.|+|||.+ +-.+...+.. .+.++++++||..-+.+..+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~----~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA----AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH----TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh----CCCeEEEECCcHHHHHHHHHh
Confidence 368899999999976553 77889999999964 3334444444 367899999999998886665
No 150
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.35 E-value=0.0013 Score=65.92 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCce
Q psy18032 59 IPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ 137 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 137 (333)
.+++.|.+++..++.. ..++++||+|||||....--+.+.+.. +.++|+++||..-+.++.+.+... +++
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-----g~~VLv~a~sn~Avd~l~e~l~~~----~~~ 227 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-----GLRVLVTAPSNIAVDNLLERLALC----DQK 227 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCEEEEcCcHHHHHHHHHHHHhC----CCc
Confidence 4688999999998886 568999999999996555444444333 568999999999999998888762 455
Q ss_pred EEEEE
Q psy18032 138 STCLL 142 (333)
Q Consensus 138 ~~~~~ 142 (333)
++-+.
T Consensus 228 vvRlg 232 (637)
T TIGR00376 228 IVRLG 232 (637)
T ss_pred EEEeC
Confidence 44443
No 151
>KOG0340|consensus
Probab=97.35 E-value=6.7e-05 Score=67.51 Aligned_cols=38 Identities=45% Similarity=0.711 Sum_probs=35.9
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~ 330 (333)
.+||.++++.++.++++||||||.||.||+|+++-++.
T Consensus 36 ~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP 73 (442)
T KOG0340|consen 36 ACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP 73 (442)
T ss_pred hhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC
Confidence 68999999999999999999999999999999998764
No 152
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.34 E-value=0.00023 Score=62.43 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=68.2
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCc-chHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 105 TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD-SMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 105 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
...|.+|||+.+---|-++.+.++.+. .-+..++-++... ..+++...+.. ..+|.||||+|+..++..+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 346899999999999999999999863 1134555566664 77888888875 58999999999999999999999999
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|+
T Consensus 203 ~~ivl 207 (252)
T PF14617_consen 203 KRIVL 207 (252)
T ss_pred eEEEE
Confidence 99996
No 153
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.30 E-value=0.0065 Score=52.41 Aligned_cols=130 Identities=18% Similarity=0.277 Sum_probs=83.7
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhc---CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE---GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~---g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
.+|+-...+.+++=.+. .++- .++.|.+....+.+ |+|.+.+.-.|.|||.+ ++|++..+..+ .+.-+-++
T Consensus 3 ~~w~p~~~P~wLl~E~e-~~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd---g~~Lvrvi 76 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE-SNIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD---GSRLVRVI 76 (229)
T ss_pred CCCCchhChHHHHHHHH-cCce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC---CCcEEEEE
Confidence 46777777777764443 3555 79999999999887 57999999999999964 55666655542 23355566
Q ss_pred cccHHHHHHHHHHHHH-HhccCCceEEEE--ECCcch--H--HHH----HHhhCCCCEEEECchHHHHHHH
Q psy18032 114 SPTRELALQTFKFVKE-LGKFTKLQSTCL--LGGDSM--D--NQF----ARLHASPDIVVATPGRFLHIVV 173 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~--~g~~~~--~--~~~----~~l~~~~~IlI~TP~rll~~l~ 173 (333)
+| ++|..|..+.++. ++.-.+-++..+ .-.... . +.. +.....-.|+++|||.++.+.-
T Consensus 77 Vp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L 146 (229)
T PF12340_consen 77 VP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKL 146 (229)
T ss_pred cC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHH
Confidence 66 4689999998886 443344333332 122211 1 111 1222345699999999887643
No 154
>KOG0346|consensus
Probab=97.25 E-value=0.00015 Score=66.99 Aligned_cols=34 Identities=59% Similarity=0.907 Sum_probs=32.3
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhc
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~ 326 (333)
..||..++++++...+|||||||.||++|++|.|
T Consensus 48 ~aIplaLEgKDvvarArTGSGKT~AYliPllqkl 81 (569)
T KOG0346|consen 48 SAIPLALEGKDVVARARTGSGKTAAYLIPLLQKL 81 (569)
T ss_pred cccchhhcCcceeeeeccCCCchHHHHHHHHHHH
Confidence 5899999999999999999999999999999976
No 155
>KOG1803|consensus
Probab=97.14 E-value=0.001 Score=64.02 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=55.3
Q ss_pred CCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
.+.+.|.+|+....+.++ .+++||+|+|||.....-+.+.+.. +.++|+.+||.+-+..+.+.+-
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----CCeEEEEcCchHHHHHHHHHhc
Confidence 467899999999888877 8899999999998877777777666 5699999999999988888654
No 156
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=97.13 E-value=0.00027 Score=55.28 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=52.4
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCccccc-------cc
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVL-------EG 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi-------~~ 301 (333)
.+|||++...++.+++.|. +..+..+|| .+ ..++.|.++...+|++|. +..+.++ -.
T Consensus 31 ~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~ 110 (131)
T cd00079 31 VLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPS 110 (131)
T ss_pred EEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHH
Confidence 4789999999999999997 778889997 23 445999999999999997 2223333 14
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.+.|++||+|
T Consensus 111 ~~~Q~~GR~~ 120 (131)
T cd00079 111 SYLQRIGRAG 120 (131)
T ss_pred Hheecccccc
Confidence 5889999998
No 157
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.09 E-value=0.0068 Score=63.44 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=72.2
Q ss_pred CCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.+.++|.+.+.-++ +|.+.|+.-..|.|||+-.+ .++..+...... ...+|||||.. +..+-.+.+++++ .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~~~-~gp~LIVvP~S-lL~nW~~Ei~kw~--p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYRGI-TGPHMVVAPKS-TLGNWMNEIRRFC--P 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhcCC-CCCEEEEeChH-HHHHHHHHHHHHC--C
Confidence 57999999998765 57889999999999998543 333333321122 33689999974 5566777788764 4
Q ss_pred CceEEEEECCcchHHHHHH---hhCCCCEEEECchHHHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFAR---LHASPDIVVATPGRFLHI 171 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~---l~~~~~IlI~TP~rll~~ 171 (333)
.+++..++|.......... .....+|+|+|.+.+...
T Consensus 244 ~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e 283 (1033)
T PLN03142 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKE 283 (1033)
T ss_pred CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHH
Confidence 5677777776543322211 123588999999887643
No 158
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.03 E-value=0.008 Score=62.01 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=40.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
.|+.+.++||||||.+|+-.++..... -.-.+.||+||+.+.-.-+.+.++
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~---~~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK---YGLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHHHHHhh
Confidence 479999999999999999888765443 123579999999998887776655
No 159
>KOG0328|consensus
Probab=96.94 E-value=0.00058 Score=59.80 Aligned_cols=124 Identities=19% Similarity=0.369 Sum_probs=96.1
Q ss_pred CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEe
Q psy18032 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 236 (333)
Q Consensus 157 ~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~ 236 (333)
..+++|.||.|-+....... +..++..++.++....++.++.+.++++..+.+++.+||||+.+++..
T Consensus 95 ~tQ~lilsPTRELa~Qi~~v------------i~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr 162 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKV------------ILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR 162 (400)
T ss_pred eeeEEEecChHHHHHHHHHH------------HHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh
Confidence 47899999999998887776 778888888888888999999999999999999999999998777655
Q ss_pred cchhhhhHHHHhh---------cchhhHHHHHHHhc-CCCcccccc-----chHHHhhhCCCCcccccccc
Q psy18032 237 MELKLSSIQLSLT---------DFKQDTSRIALDLV-GDSTEMIHK-----QRQSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 237 ~~~k~~~l~lif~---------~~~~~~~~l~~~L~-g~~~~~lh~-----~r~~l~~f~~g~~~vLvaTd 292 (333)
.......+.+++. -++.+...++.+|. |..+.++.+ -.+..++|...-+++||--|
T Consensus 163 ~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd 233 (400)
T KOG0328|consen 163 RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD 233 (400)
T ss_pred ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecC
Confidence 4444444433333 36677777777776 666655555 23555999999999999776
No 160
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.85 E-value=0.0019 Score=54.98 Aligned_cols=59 Identities=25% Similarity=0.245 Sum_probs=42.2
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
+..|+-|..++.++++..-+++.||.|||||+.++..+++.+... .-.+.+|.-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG---EYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT---S-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC---CCcEEEEEecCCCC
Confidence 445889999999999777799999999999999999999988762 23467888887764
No 161
>KOG0331|consensus
Probab=96.79 E-value=0.00091 Score=64.15 Aligned_cols=82 Identities=37% Similarity=0.622 Sum_probs=68.4
Q ss_pred CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEe
Q psy18032 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 236 (333)
Q Consensus 157 ~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~ 236 (333)
+|.+||-+|.|-+..+.+.. ..++..-+..+..+++++++..+++..+.++.+|+++||||+.+++..
T Consensus 165 ~P~vLVL~PTRELA~QV~~~------------~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~ 232 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAE------------AREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE 232 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHH------------HHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc
Confidence 68999999999998887765 677777777889999999999999999999999999999999888877
Q ss_pred cchhhhhHHHHhhc
Q psy18032 237 MELKLSSIQLSLTD 250 (333)
Q Consensus 237 ~~~k~~~l~lif~~ 250 (333)
....+..+.+++.+
T Consensus 233 g~~~l~~v~ylVLD 246 (519)
T KOG0331|consen 233 GSLNLSRVTYLVLD 246 (519)
T ss_pred CCccccceeEEEec
Confidence 66665555444443
No 162
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.0062 Score=56.77 Aligned_cols=127 Identities=16% Similarity=0.229 Sum_probs=70.8
Q ss_pred CcccccCCCHHHHHHHHhC---C--CCCCcH---HHHhHHHH----H-------hcCCcEEEECCCCcHHHHHHHHHHHH
Q psy18032 37 GGFQSFGLGFEVLKGVLKR---G--YKIPTP---IQRKTIPL----V-------LEGRDVVAMARTGSGKTACFLIPMLE 97 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~---g--~~~~~~---~Q~~~i~~----i-------~~g~d~l~~a~TGsGKT~~~~l~~l~ 97 (333)
..+.+.|+++.+.+.|-+. + ...+.. +....+.. + -.|..++++||||+|||....--+..
T Consensus 81 ~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 81 KYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred HHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4566778888887776442 1 112212 22222211 1 12457999999999999755533333
Q ss_pred HhhhhcccCC-ceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 98 KLKTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 98 ~l~~~~~~~~-~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
.... .+ .++.++. +-..-.--.+.++.+++..++.+..+..+.........+.+..-|+|=||++.
T Consensus 161 ~~~~----~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 161 CVMR----FGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHh----cCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCC
Confidence 2222 12 2333333 33321122344556666678887777666666665666666566889999865
No 163
>KOG0925|consensus
Probab=96.70 E-value=0.023 Score=53.72 Aligned_cols=92 Identities=21% Similarity=0.111 Sum_probs=58.8
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
+....|...+.++...+.|++.-=-.-+..+.+-+..+.+.+-++++|.||||||.-.=-..+..... ....+..-
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~----~~~~v~CT 97 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS----HLTGVACT 97 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh----hccceeec
Confidence 34778999999999999998752221244455556667777889999999999995211111121111 12345555
Q ss_pred cccHHHHHHHHHHHHH
Q psy18032 114 SPTRELALQTFKFVKE 129 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~ 129 (333)
-|-|--|.++..+...
T Consensus 98 Qprrvaamsva~RVad 113 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVAD 113 (699)
T ss_pred CchHHHHHHHHHHHHH
Confidence 6888878877665554
No 164
>KOG0334|consensus
Probab=96.59 E-value=0.00084 Score=68.26 Aligned_cols=39 Identities=41% Similarity=0.712 Sum_probs=35.3
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFN 332 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~ 332 (333)
..||.|..+.++.+++-||+|||++|+||++ |+..+|+.
T Consensus 394 qAiP~ImsGrdvIgvakTgSGKT~af~LPmi-rhi~dQr~ 432 (997)
T KOG0334|consen 394 QAIPAIMSGRDVIGVAKTGSGKTLAFLLPMI-RHIKDQRP 432 (997)
T ss_pred hhcchhccCcceEEeeccCCccchhhhcchh-hhhhcCCC
Confidence 5899999999999999999999999999999 77776653
No 165
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=96.55 E-value=0.00082 Score=47.74 Aligned_cols=54 Identities=26% Similarity=0.366 Sum_probs=38.7
Q ss_pred HHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 258 IALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 258 l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
+++.|. ++.+..+|| ++ +.++.|.+++..+|++|+ +++..++. ..+.|++||+|
T Consensus 3 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 3 LAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 444454 788889998 23 456999999999999998 22334432 45788999988
No 166
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.54 E-value=0.025 Score=57.01 Aligned_cols=67 Identities=31% Similarity=0.430 Sum_probs=52.7
Q ss_pred CCCCCcHHHHhHHHHHhcC-----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 56 GYKIPTPIQRKTIPLVLEG-----RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g-----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
+|. |++.|..++..+.++ +..++.|.+|||||+... .++... +..+|||+|+...|.+.++.++.+
T Consensus 10 ~~~-~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-------~r~vLIVt~~~~~A~~l~~dL~~~ 80 (652)
T PRK05298 10 PYK-PAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-------QRPTLVLAHNKTLAAQLYSEFKEF 80 (652)
T ss_pred CCC-CChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-------CCCEEEEECCHHHHHHHHHHHHHh
Confidence 455 999999999998654 257799999999997643 222221 236999999999999999999987
Q ss_pred h
Q psy18032 131 G 131 (333)
Q Consensus 131 ~ 131 (333)
.
T Consensus 81 ~ 81 (652)
T PRK05298 81 F 81 (652)
T ss_pred c
Confidence 5
No 167
>KOG1123|consensus
Probab=96.53 E-value=0.0018 Score=61.06 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=72.0
Q ss_pred CCcHHHHhHHHHHhc-C--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 59 IPTPIQRKTIPLVLE-G--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~-g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
.++|+|.+++..+.- | ++-+++.|-|+|||++-+-+++.. ...||+++.+---+.|...++..+....+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti--------kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI--------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee--------cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 478999999999775 3 689999999999999877665543 34799999999999999999988765545
Q ss_pred ceEEEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
-.++.++.+... ....++.|+|+|-..+
T Consensus 374 ~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMv 401 (776)
T KOG1123|consen 374 DQICRFTSDAKE-----RFPSGAGVVVTTYSMV 401 (776)
T ss_pred cceEEeeccccc-----cCCCCCcEEEEeeehh
Confidence 555555544322 1234688888886544
No 168
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.45 E-value=0.049 Score=56.58 Aligned_cols=81 Identities=31% Similarity=0.284 Sum_probs=55.0
Q ss_pred cHHHHhHHHHHhc----C----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 61 TPIQRKTIPLVLE----G----RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 61 ~~~Q~~~i~~i~~----g----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
..+|-+|+..+.+ . -=++--|.||+|||++=.=-+.. +.. ...|.+..|-.-.|.|-.|.-+.+++-..
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImya-Lsd--~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYA-LRD--DKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHH-hCC--CCCCceEEEEccccceeccchHHHHHhcC
Confidence 4599999998776 1 12666789999999864432222 222 23467888888999999998888887544
Q ss_pred cCCceEEEEECC
Q psy18032 133 FTKLQSTCLLGG 144 (333)
Q Consensus 133 ~~~~~~~~~~g~ 144 (333)
..+-..++++|+
T Consensus 487 L~~ddLAVlIGs 498 (1110)
T TIGR02562 487 LSDDDLAVLIGG 498 (1110)
T ss_pred CCccceEEEECH
Confidence 334455555554
No 169
>KOG0342|consensus
Probab=96.43 E-value=0.023 Score=53.63 Aligned_cols=96 Identities=25% Similarity=0.353 Sum_probs=73.8
Q ss_pred CCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhcc-ccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEE
Q psy18032 156 ASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 234 (333)
Q Consensus 156 ~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~-~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~ 234 (333)
++..++|.+|.|.+.+..... ..++.++. ....+.+.++...+.+..++.+++.++++||||+.+|+
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~e------------ak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHl 220 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAE------------AKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHL 220 (543)
T ss_pred CCeeEEEecccHHHHHHHHHH------------HHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHh
Confidence 467899999999999988776 77777777 56789999999999999999999999999999999999
Q ss_pred EecchhhhhH----------HHHhhcchhhHHHHHHHhc
Q psy18032 235 VEMELKLSSI----------QLSLTDFKQDTSRIALDLV 263 (333)
Q Consensus 235 ~~~~~k~~~l----------~lif~~~~~~~~~l~~~L~ 263 (333)
.+......+. .+.=..++++.+.+...|.
T Consensus 221 qNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp 259 (543)
T KOG0342|consen 221 QNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILP 259 (543)
T ss_pred hcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhcc
Confidence 7654322211 1233346777777775554
No 170
>COG4889 Predicted helicase [General function prediction only]
Probab=96.42 E-value=0.012 Score=59.21 Aligned_cols=141 Identities=21% Similarity=0.239 Sum_probs=84.1
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCc----EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD----VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d----~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
-.|+.+.. .++...+.-..=.+|+|+|+.|+....+|-. -=+.+..|+|||+..+ -+.+.+.. .++|+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~------~~iL~ 211 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA------ARILF 211 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh------hheEe
Confidence 35555543 3444444433445699999999999998621 2334556999998665 33344333 58999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCcchH--------------------HHHHHh-----hCCCCEEEECchH
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD--------------------NQFARL-----HASPDIVVATPGR 167 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~--------------------~~~~~l-----~~~~~IlI~TP~r 167 (333)
++|+..|..|..+.+..- +.+.++...+.++.... .....+ .++--|+++|-..
T Consensus 212 LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQS 290 (1518)
T COG4889 212 LVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQS 290 (1518)
T ss_pred ecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccc
Confidence 999999999998888763 23455555554432211 111111 1235577777766
Q ss_pred HHHHHHhccccccCchhhH
Q psy18032 168 FLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 168 ll~~l~~~~~~~~~l~~lV 186 (333)
+...-+.....+..+.+++
T Consensus 291 l~~i~eAQe~G~~~fDlii 309 (1518)
T COG4889 291 LPRIKEAQEAGLDEFDLII 309 (1518)
T ss_pred hHHHHHHHHcCCCCccEEE
Confidence 6655544444455555555
No 171
>KOG0348|consensus
Probab=96.39 E-value=0.0018 Score=61.56 Aligned_cols=36 Identities=42% Similarity=0.704 Sum_probs=33.4
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.+||.++++.+..--++||+|||+||++|+++.|..
T Consensus 166 q~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~ 201 (708)
T KOG0348|consen 166 QAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQA 201 (708)
T ss_pred cchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHh
Confidence 689999999999999999999999999999998764
No 172
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.37 E-value=0.015 Score=51.82 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=34.1
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhh
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTH 102 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~ 102 (333)
+....+|+++++++-+.+.+.. .+. ++|.||||||||. -+-+++..++++
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~-------------------~~GLILVTGpTGSGKST-TlAamId~iN~~ 152 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAES-------------------PRGLILVTGPTGSGKST-TLAAMIDYINKH 152 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhC-------------------CCceEEEeCCCCCcHHH-HHHHHHHHHhcc
Confidence 4566788888888766653221 122 8999999999995 344666776663
No 173
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.32 E-value=0.02 Score=57.87 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=56.9
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCce
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ 137 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 137 (333)
..+++-|.+++-. ...+++|.|..|||||.+.+--+...+... ...+.++|+++.|+..|.++.+++.......++.
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~v~ 271 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRERLGTEDIT 271 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHhcCCCCcE
Confidence 3589999998853 335799999999999987665554444332 1224589999999999999999988744322344
Q ss_pred EEE
Q psy18032 138 STC 140 (333)
Q Consensus 138 ~~~ 140 (333)
+..
T Consensus 272 v~T 274 (684)
T PRK11054 272 ART 274 (684)
T ss_pred EEe
Confidence 433
No 174
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.24 E-value=0.036 Score=49.93 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=14.6
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+.++++||||+|||....
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999996444
No 175
>PRK10536 hypothetical protein; Provisional
Probab=96.21 E-value=0.016 Score=51.01 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=45.3
Q ss_pred CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
++..-+..|...+..+.+...+++.||+|||||+......++.+... .-.+.+|.-|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~---~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK---DVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CeeEEEEeCCCCC
Confidence 45556889999999999888899999999999998888777766441 1234555556654
No 176
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.19 E-value=0.03 Score=53.44 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=47.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHh-hhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKL-KTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l-~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
|+.+++.+|||+|||....--+.... .. .+.++.++.- .+.-+. +.++.++...++.+............
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~----~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~~~~~~~~l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY----GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVEVVYDPKELAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc----CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceEccCCHHhHHHH
Confidence 45689999999999965442222221 12 1334555442 222222 44555555567766555444444444
Q ss_pred HHHhhCCCCEEEECchH
Q psy18032 151 FARLHASPDIVVATPGR 167 (333)
Q Consensus 151 ~~~l~~~~~IlI~TP~r 167 (333)
...+...-.|||=||++
T Consensus 294 l~~~~~~DlVlIDt~G~ 310 (424)
T PRK05703 294 LEQLRDCDVILIDTAGR 310 (424)
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 44444333488999987
No 177
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.027 Score=49.90 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=45.9
Q ss_pred CCCCCCcHHHHhHHHHHh-------cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRKTIPLVL-------EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~-------~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
..|......+..++..+. .++++++.||+|+|||..+..-. +.+.. .+.-++++++.+|+.++...+
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~-~~l~~-----~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIG-NELLK-----AGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHH-HHHHH-----cCCeEEEEEHHHHHHHHHHHH
Confidence 345555555666555443 46799999999999996544333 33333 245677789999999887766
Q ss_pred HH
Q psy18032 128 KE 129 (333)
Q Consensus 128 ~~ 129 (333)
..
T Consensus 153 ~~ 154 (254)
T COG1484 153 DE 154 (254)
T ss_pred hc
Confidence 63
No 178
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.09 E-value=0.023 Score=52.04 Aligned_cols=66 Identities=29% Similarity=0.459 Sum_probs=44.1
Q ss_pred HHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 49 LKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 49 ~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
++.|.+.|+ +++.|.+.+.. +..+++++++|+|||||| .++-.++..+... ...-+.+++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~--~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQ--DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhc--CCCceEEEEcCCCcc
Confidence 344555565 46777777776 556789999999999999 4555555554221 123467777777776
No 179
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.012 Score=57.76 Aligned_cols=92 Identities=34% Similarity=0.521 Sum_probs=71.2
Q ss_pred EEEECchHHHHHHHhccccccCchhhHHHHHHHhhcc-ccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEecc
Q psy18032 160 IVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 238 (333)
Q Consensus 160 IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~-~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~~~ 238 (333)
.||.+|.|.+....... ...+.+.. ..+..+++++..+..+...+..+++|+++||||+.+++....
T Consensus 102 aLil~PTRELA~Qi~~~------------~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~ 169 (513)
T COG0513 102 ALILAPTRELAVQIAEE------------LRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGK 169 (513)
T ss_pred eEEECCCHHHHHHHHHH------------HHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCC
Confidence 89999999998877655 56666666 567888899999999998898889999999999998887776
Q ss_pred hhhhhHHHHhhc---------chhhHHHHHHHhc
Q psy18032 239 LKLSSIQLSLTD---------FKQDTSRIALDLV 263 (333)
Q Consensus 239 ~k~~~l~lif~~---------~~~~~~~l~~~L~ 263 (333)
.++..+.+++.+ +.++.+.+...+.
T Consensus 170 l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p 203 (513)
T COG0513 170 LDLSGVETLVLDEADRMLDMGFIDDIEKILKALP 203 (513)
T ss_pred cchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC
Confidence 666665444333 6666666665554
No 180
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.94 E-value=0.02 Score=58.02 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=54.7
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.+++-|.+++... .-.++|.|+.|||||.+..--+...+.... -...+.|+++.|+.-|.++.+++..+.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 3789999998652 457999999999999887776666665321 123479999999999999999998753
No 181
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.85 E-value=0.038 Score=50.59 Aligned_cols=65 Identities=25% Similarity=0.271 Sum_probs=42.3
Q ss_pred HHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 51 GVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 51 ~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
.+.+.|. +++.|.+.+.. +..+.+++++|+||||||. ++-+++..+...+ .+-+.+.+=.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~--~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASA--PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCC--CCceEEEecCCcccc
Confidence 3445554 46677777666 5556799999999999995 4455555553211 133677777777763
No 182
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.08 Score=51.47 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=48.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
.|+.+.++||||+|||....--+...... ..+.++.++. +.+.-+. ++++.++...++.+............
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~---~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~a~d~~~L~~a 422 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ---HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHEADSAESLLDL 422 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh---cCCCceEEEecccccccHH---HHHHHhhcccCceeEecCcHHHHHHH
Confidence 35678999999999996553222222222 0122344443 2343333 33445555566665544443444444
Q ss_pred HHHhhCCCCEEEECchHH
Q psy18032 151 FARLHASPDIVVATPGRF 168 (333)
Q Consensus 151 ~~~l~~~~~IlI~TP~rl 168 (333)
.+.+.+.--|||=||++.
T Consensus 423 L~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 423 LERLRDYKLVLIDTAGMG 440 (559)
T ss_pred HHHhccCCEEEecCCCcc
Confidence 444544455778899875
No 183
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.80 E-value=0.023 Score=58.69 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=77.4
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEE
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 139 (333)
|.++|.-.--.+ .+.-++.+.||=|||+++.+|+.-.... |.-+-|++..-.||.-=.+++..+..++|+.+.
T Consensus 170 ~yDVQliGgivL--h~G~IAEM~TGEGKTLvAtlp~yLnAL~-----GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg 242 (1112)
T PRK12901 170 HYDVQLIGGVVL--HQGKIAEMATGEGKTLVATLPVYLNALT-----GNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVD 242 (1112)
T ss_pred ccchHHhhhhhh--cCCceeeecCCCCchhHHHHHHHHHHHc-----CCCcEEEEechhhhhccHHHHHHHHHHhCCcee
Confidence 666776544344 3557899999999999999999887776 455788899999999999999999999999999
Q ss_pred EEEC-CcchHHHHHHhhCCCCEEEECchHH
Q psy18032 140 CLLG-GDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 140 ~~~g-~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
++.. +.+..+ +.-.-.|+|.++|..-+
T Consensus 243 ~i~~~~~~~~~--rr~aY~~DItYgTn~Ef 270 (1112)
T PRK12901 243 CIDKHQPNSEA--RRKAYNADITYGTNNEF 270 (1112)
T ss_pred ecCCCCCCHHH--HHHhCCCcceecCCCcc
Confidence 8876 334433 22334689999998654
No 184
>KOG0345|consensus
Probab=95.75 E-value=0.03 Score=52.63 Aligned_cols=108 Identities=26% Similarity=0.415 Sum_probs=72.8
Q ss_pred CCEEEECchHHHHHHHhccccccCchhhHHHHHHH-hhccccceeeeecCCChHHHHHhhh-cCCcEEEeCCCceEEEEE
Q psy18032 158 PDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKEL-GKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 158 ~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l-~~~~~~~~~~l~~sAT~~~~v~~l~-~~~~i~~~t~~~i~~~~~ 235 (333)
..-+|.||.|-+....... +..+ .++.+..++++.++.++.+.+..+. +++.|+++||||+.+++.
T Consensus 80 vgalIIsPTRELa~QI~~V------------~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREV------------AQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred eeEEEecCcHHHHHHHHHH------------HHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHh
Confidence 4678999999887765443 2222 2346688999999999999999887 678999999999988886
Q ss_pred ecchhhh--hHHHHhh---------cchhhHHHHHHHhcCC-Ccccccc-chHHH
Q psy18032 236 EMELKLS--SIQLSLT---------DFKQDTSRIALDLVGD-STEMIHK-QRQSV 277 (333)
Q Consensus 236 ~~~~k~~--~l~lif~---------~~~~~~~~l~~~L~g~-~~~~lh~-~r~~l 277 (333)
....+++ .+.+++. .+.+....|-..|... +..++.+ +.+.+
T Consensus 148 ~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v 202 (567)
T KOG0345|consen 148 REAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEV 202 (567)
T ss_pred chhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHH
Confidence 5433443 3333333 3566666676666533 3444444 55555
No 185
>KOG0385|consensus
Probab=95.69 E-value=0.13 Score=51.31 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=77.5
Q ss_pred CCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.++++|.+.+.-+. +|-|.|..-.-|-|||+ -.++.+..+....+..|| -||++|...|.+= .+.+++++ +
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTl-QtIs~l~yl~~~~~~~GP-fLVi~P~StL~NW-~~Ef~rf~--P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTL-QTISLLGYLKGRKGIPGP-FLVIAPKSTLDNW-MNEFKRFT--P 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHH-HHHHHHHHHHHhcCCCCC-eEEEeeHhhHHHH-HHHHHHhC--C
Confidence 57889988766544 47899999999999995 344445544443333454 8999999988663 33455543 6
Q ss_pred CceEEEEECCcchHHHH-H-HhhC-CCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 135 KLQSTCLLGGDSMDNQF-A-RLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~-~-~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
++.+.+.+|+....... + .+.. ..+|+|+|-+..+.- +..+.--..+|+|
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylv 294 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLV 294 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEE
Confidence 78899999887433222 2 2222 589999998877643 2222233445555
No 186
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.65 E-value=0.07 Score=56.14 Aligned_cols=106 Identities=20% Similarity=0.134 Sum_probs=73.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (333)
+..+++=-+|||||+.-+..+-..+.. ...+.+++|+=.++|-.|..+.+..++....... ...+.++-.+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHH
Confidence 358999999999998777665444443 4468999999999999999999999865433222 344555555555
Q ss_pred hCC-CCEEEECchHHHHHHHhc-cccccCchhhHH
Q psy18032 155 HAS-PDIVVATPGRFLHIVVEM-ELKLSSIQYTFK 187 (333)
Q Consensus 155 ~~~-~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~ 187 (333)
.++ -.|+|+|-..+-...... .....+-.++|+
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI 381 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVI 381 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEE
Confidence 544 489999999998777664 222344444443
No 187
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.054 Score=50.91 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=50.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (333)
..++++||||+|||.+..--+....... ..++..+.+++ +.|.-+.++ ++.++...++.+..............
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~-~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS-DDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh-ccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 4589999999999966542222221111 11233444444 333444433 66666667777655443333333334
Q ss_pred HhhCCCCEEEECchHHH
Q psy18032 153 RLHASPDIVVATPGRFL 169 (333)
Q Consensus 153 ~l~~~~~IlI~TP~rll 169 (333)
.+.+.-.|+|=||++..
T Consensus 251 ~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HhCCCCEEEEcCCCCCc
Confidence 44433557788999875
No 188
>KOG0744|consensus
Probab=95.62 E-value=0.071 Score=48.15 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=67.3
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE------------EcccHHHHHHHHHHHHHHhccCCceEEEEEC
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI------------LSPTRELALQTFKFVKELGKFTKLQSTCLLG 143 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li------------l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 143 (333)
=+++.||+|+|||. .+=++.+++.-..+.+-+.+.+ .+-+-.|+.++++.+.++.+..|.-+.++..
T Consensus 179 liLlhGPPGTGKTS-LCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744|consen 179 LILLHGPPGTGKTS-LCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred EEEEeCCCCCChhH-HHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeH
Confidence 48999999999993 3334445543222222222222 2345568889999999998887776666654
Q ss_pred Cc---------------ch---------HHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 144 GD---------------SM---------DNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 144 ~~---------------~~---------~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
.. +. -.|...++..++++|-|...|.+-+....++-.++.+.|
T Consensus 258 EVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 258 EVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYV 324 (423)
T ss_pred HHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeec
Confidence 31 11 123445566788888887777777666555555544444
No 189
>KOG0338|consensus
Probab=95.59 E-value=0.028 Score=53.39 Aligned_cols=81 Identities=35% Similarity=0.526 Sum_probs=63.4
Q ss_pred CCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEec
Q psy18032 158 PDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM 237 (333)
Q Consensus 158 ~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~~ 237 (333)
.++||.+|.|-+....... ...|.++.........++-.+..+-..|...|+|+++||||+.+|+.+.
T Consensus 253 TRVLVL~PTRELaiQv~sV------------~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs 320 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSV------------TKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS 320 (691)
T ss_pred eeEEEEeccHHHHHHHHHH------------HHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC
Confidence 6899999999998887665 6777777776666677787888888888999999999999999999765
Q ss_pred -chhhhhHHHHhhc
Q psy18032 238 -ELKLSSIQLSLTD 250 (333)
Q Consensus 238 -~~k~~~l~lif~~ 250 (333)
...++.+.+++.+
T Consensus 321 ~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 321 PSFNLDSIEVLVLD 334 (691)
T ss_pred CCccccceeEEEec
Confidence 3455555444444
No 190
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.59 E-value=0.074 Score=55.75 Aligned_cols=65 Identities=25% Similarity=0.208 Sum_probs=49.4
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
+.|+. +++-|.+++..++.+.+ ++++|+.|+|||.. +-++...+.. .|.+++.++||-.-+..+.
T Consensus 342 ~~g~~-Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 342 ARGLV-LSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----AGYEVRGAALSGIAAENLE 407 (988)
T ss_pred hcCCC-CCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----cCCeEEEecCcHHHHHHHh
Confidence 34655 89999999999999776 78999999999974 3333343333 3678999999988776654
No 191
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.51 E-value=0.067 Score=49.93 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCcEEEECCCCcHHHHHHH-HHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL-IPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (333)
++-+.+.||||-|||.... |++.-.... .+..-+||-.-|--.. -+++++.+++.+|+.+.++.......+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~---~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK---KKKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc---cCcceEEEEeccchhh--HHHHHHHHHHHhCCceEEecCHHHHHHHHH
Confidence 6679999999999996544 333222122 1222444444333322 235577777789999999998888888888
Q ss_pred HhhCCCCEEEECchH
Q psy18032 153 RLHASPDIVVATPGR 167 (333)
Q Consensus 153 ~l~~~~~IlI~TP~r 167 (333)
.+.+.-.|||-|-||
T Consensus 278 ~l~~~d~ILVDTaGr 292 (407)
T COG1419 278 ALRDCDVILVDTAGR 292 (407)
T ss_pred HhhcCCEEEEeCCCC
Confidence 888777788999875
No 192
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.49 E-value=0.007 Score=57.83 Aligned_cols=36 Identities=44% Similarity=0.629 Sum_probs=32.5
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
..+|.++++.++..++.||+|||++|++|+++++..
T Consensus 37 ~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~ 72 (423)
T PRK04837 37 LALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLS 72 (423)
T ss_pred HHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHh
Confidence 467888899999999999999999999999998864
No 193
>PRK05973 replicative DNA helicase; Provisional
Probab=95.47 E-value=0.041 Score=48.10 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=55.1
Q ss_pred cccCCCHHHHHHHHhCCCCC----------CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCce
Q psy18032 40 QSFGLGFEVLKGVLKRGYKI----------PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVR 109 (333)
Q Consensus 40 ~~~~l~~~l~~~l~~~g~~~----------~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 109 (333)
..++|++.+-+.-.+-||.. +||.. +..--+..|.-+++.|++|+|||...+--+.+.... |..
T Consensus 21 ~~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-----Ge~ 94 (237)
T PRK05973 21 QNIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-----GRT 94 (237)
T ss_pred cCCcHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-----CCe
Confidence 45678888888777878863 45522 233344556679999999999997555444444332 456
Q ss_pred EEEEcccHHHHHHHHHHHHHH
Q psy18032 110 ALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 110 ~lil~Pt~~L~~q~~~~~~~~ 130 (333)
++|++ ..+-..|+.+.+..+
T Consensus 95 vlyfS-lEes~~~i~~R~~s~ 114 (237)
T PRK05973 95 GVFFT-LEYTEQDVRDRLRAL 114 (237)
T ss_pred EEEEE-EeCCHHHHHHHHHHc
Confidence 77775 444467888888775
No 194
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.46 E-value=0.043 Score=55.63 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=53.9
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
+++-|.+++.. ...+++|.|..|||||.+..--+...+... .....+.|+|+.|+.-+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~-~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNC-GYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68899998864 346899999999999987776666666431 1123579999999999999999998754
No 195
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.45 E-value=0.077 Score=48.23 Aligned_cols=67 Identities=30% Similarity=0.468 Sum_probs=42.7
Q ss_pred HHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 49 LKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 49 ~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
++.+.+.|. +++.|.+.+.. +..+++++++|+||||||. ++-.++..+... ....+.+++--+.|+.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~--~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKN--DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhcc--CCCceEEEECCchhhc
Confidence 344455554 45556666665 5556799999999999995 444555555431 1134678888777763
No 196
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=95.37 E-value=0.12 Score=52.28 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=39.7
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.++.||.|||||.+..-++-+.+.. ...++|+|+..+.|+.+..+.++.
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~----~~~~VLvVShRrSL~~sL~~rf~~ 100 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKN----PDKSVLVVSHRRSLTKSLAERFKK 100 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccC----CCCeEEEEEhHHHHHHHHHHHHhh
Confidence 7899999999998765554444332 356899999999999999999986
No 197
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.35 E-value=0.038 Score=46.20 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=27.2
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
-+++++++.||+|+|||..+..- ...+.. ++..+++ ++..+|..++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai-~~~~~~----~g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAI-ANEAIR----KGYSVLF-ITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHH-HHHHHH----TT--EEE-EEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHH-HHHhcc----CCcceeE-eecCceeccc
Confidence 35789999999999999654433 333333 2545555 5666676654
No 198
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.28 E-value=0.083 Score=53.96 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=49.2
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
..++. +++-|.+++..+...+-++++|+.|||||... -.++..+... .....+++++||-.-|..+.+
T Consensus 319 ~~~~~-l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~--~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 319 KLRKG-LSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL--GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred hcCCC-CCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCceEEEEeCchHHHHHHHH
Confidence 34654 89999999999998889999999999999633 2333333331 011568889999887776544
No 199
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.28 E-value=0.05 Score=55.65 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=55.5
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
..+++-|.+++... ...++|.|..|||||.+..--+...+... +-...+.|+++.|+.-|.++.+++..+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45899999998653 45899999999999987666655555431 11234799999999999999999988643
No 200
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.085 Score=49.48 Aligned_cols=87 Identities=14% Similarity=0.203 Sum_probs=47.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (333)
+.+.++||||+|||.....-+.. +.. .+.++.++.. -|.-+.++ ++.++...++.+..........+...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~----~GkkVglI~aDt~RiaAvEQ---Lk~yae~lgipv~v~~d~~~L~~aL~ 313 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG----KKKTVGFITTDHSRIGTVQQ---LQDYVKTIGFEVIAVRDEAAMTRALT 313 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH----cCCcEEEEecCCcchHHHHH---HHHHhhhcCCcEEecCCHHHHHHHHH
Confidence 45889999999999655433332 222 2444555443 33323333 44444456776665443333433344
Q ss_pred HhhC--C-CCEEEECchHHH
Q psy18032 153 RLHA--S-PDIVVATPGRFL 169 (333)
Q Consensus 153 ~l~~--~-~~IlI~TP~rll 169 (333)
.+.. + --|+|-||++..
T Consensus 314 ~lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 314 YFKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHHhccCCCEEEEeCccccC
Confidence 4432 2 347789999855
No 201
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.24 E-value=0.057 Score=58.48 Aligned_cols=66 Identities=26% Similarity=0.280 Sum_probs=54.6
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.|+-|.++|. ..+.+++|.|.-|||||.+.+--++..+... ..-.+.++++=|++-|.++.++++.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG--VDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--CCHhhEEEEeccHHHHHHHHHHHHH
Confidence 6899999997 4688999999999999998887777776653 1123699999999999998888876
No 202
>KOG0339|consensus
Probab=95.22 E-value=0.018 Score=54.68 Aligned_cols=123 Identities=26% Similarity=0.311 Sum_probs=79.1
Q ss_pred CCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEE
Q psy18032 156 ASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 156 ~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~ 235 (333)
++|--||+.|.|-+....... ...+.+..+.+.-+++.++...++...|..+++++++||+|+.+++.
T Consensus 295 ~gPi~vilvPTrela~Qi~~e------------aKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vk 362 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSE------------AKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVK 362 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHH------------HHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHH
Confidence 368788999999887765443 56666667788999999999999999999999999999999877664
Q ss_pred ecchhhhhHHHHhh---------cchhhHHHHHHHhc-CCCcccccc----chHH-HhhhCCCCcccccc
Q psy18032 236 EMELKLSSIQLSLT---------DFKQDTSRIALDLV-GDSTEMIHK----QRQS-VRKWDPAKKKYVQV 290 (333)
Q Consensus 236 ~~~~k~~~l~lif~---------~~~~~~~~l~~~L~-g~~~~~lh~----~r~~-l~~f~~g~~~vLva 290 (333)
-+...+.+..+++. -+..++..|+...+ ...+.++.. +-+. .+.|..+.++++..
T Consensus 363 mKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg 432 (731)
T KOG0339|consen 363 MKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG 432 (731)
T ss_pred hhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe
Confidence 33323333222222 24444555555444 222333333 1122 25666666666654
No 203
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=95.21 E-value=0.011 Score=57.03 Aligned_cols=37 Identities=43% Similarity=0.720 Sum_probs=31.6
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccCCC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~ 330 (333)
.+|.++++.++.-++.||+|||.+|++|++++++...
T Consensus 34 ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~ 70 (460)
T PRK11776 34 SLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR 70 (460)
T ss_pred HHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc
Confidence 4566677788899999999999999999999997654
No 204
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.11 Score=52.82 Aligned_cols=89 Identities=13% Similarity=0.127 Sum_probs=47.1
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCC-ceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~-~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (333)
=+.++||||+|||.+...-+...... .+ .++.++.--..-+ --.++++.+++..++.+..........+..+.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~----~G~kkV~lit~Dt~Ri-gA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~ 261 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAR----EGADQLALLTTDSFRI-GALEQLRIYGRILGVPVHAVKDAADLRFALAAL 261 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHH----cCCCeEEEecCcccch-HHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh
Confidence 37899999999986555333222111 12 2444444322221 013445666666777665444322333333444
Q ss_pred hCCCCEEEECchHHH
Q psy18032 155 HASPDIVVATPGRFL 169 (333)
Q Consensus 155 ~~~~~IlI~TP~rll 169 (333)
.+.-.|||=||+|..
T Consensus 262 ~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 262 GDKHLVLIDTVGMSQ 276 (767)
T ss_pred cCCCEEEEeCCCCCc
Confidence 444457899999653
No 205
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.19 E-value=0.046 Score=49.80 Aligned_cols=68 Identities=24% Similarity=0.271 Sum_probs=48.9
Q ss_pred CCCCCcHHHHhHHHHHhcCC-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 56 GYKIPTPIQRKTIPLVLEGR-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.|...++-|...+..+..++ |++++|.||||||. +++.+........ ++|.+=-|.||--++-++.+-
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i~~~e-RvItiEDtaELql~~ph~vrL 222 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFIDSDE-RVITIEDTAELQLAHPHVVRL 222 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcCCCcc-cEEEEeehhhhccCCCceEEE
Confidence 57788999999999877765 99999999999995 2333322222223 889988888886665554443
No 206
>KOG0335|consensus
Probab=95.13 E-value=0.013 Score=55.56 Aligned_cols=37 Identities=43% Similarity=0.611 Sum_probs=33.6
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
.+||.+.++.++--+|.||+|||.||++|+++++-++
T Consensus 103 ~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~ 139 (482)
T KOG0335|consen 103 YSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDE 139 (482)
T ss_pred eccceeecCCceEEEccCCCcchHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999999987554
No 207
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.01 E-value=0.04 Score=50.98 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=31.9
Q ss_pred HHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 69 PLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 69 ~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
.++..+++++++||||||||. ++-+++..+.. ..+.+.+-.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTT-ll~aLl~~i~~-----~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTT-MSKTLISAIPP-----QERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHH-HHHHHHcccCC-----CCCEEEECCCcccc
Confidence 345568899999999999995 44445554433 33567777777764
No 208
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.00 E-value=0.067 Score=54.80 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=55.2
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
..+++-|.+++... ...++|.|..|||||.+..--+...+... .-...+.|+|+-|+.-|.++.+++..+..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45899999998643 45899999999999987766655555431 11234799999999999999999988643
No 209
>KOG0349|consensus
Probab=94.97 E-value=0.0098 Score=55.28 Aligned_cols=46 Identities=37% Similarity=0.520 Sum_probs=39.7
Q ss_pred CCcccccccc---CCcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 283 g~~~vLvaTd---~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.+.+-+.-|| ..||.++-+-++.-.+.||||||.||.+|++|-.|+
T Consensus 18 ~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~e 66 (725)
T KOG0349|consen 18 DELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWE 66 (725)
T ss_pred hhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHH
Confidence 3456667777 789999998899999999999999999999987765
No 210
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.93 E-value=0.13 Score=47.37 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=29.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
+.++++.||||+|||.... ++...+.. ++..+++ .+..+|..+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~----~g~~V~y-~t~~~l~~~l~~ 228 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLD----RGKSVIY-RTADELIEILRE 228 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHH----CCCeEEE-EEHHHHHHHHHH
Confidence 5789999999999996333 34444443 2445554 555666665543
No 211
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.92 E-value=0.08 Score=49.57 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=46.7
Q ss_pred CcHHHHhHHHHH------hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH--HHHHHH
Q psy18032 60 PTPIQRKTIPLV------LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT--FKFVKE 129 (333)
Q Consensus 60 ~~~~Q~~~i~~i------~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~--~~~~~~ 129 (333)
+++-|++++..+ ..+.++++.|+-|+|||. ++-.+..... ..+..+++++||-.=|..+ -..++.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~---~~~~~~~~~a~tg~AA~~i~~G~T~hs 74 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLR---SRGKKVLVTAPTGIAAFNIPGGRTIHS 74 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhc---cccceEEEecchHHHHHhccCCcchHH
Confidence 577899998888 678899999999999995 3333333333 2356799999998877766 344444
No 212
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.92 E-value=0.18 Score=51.68 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=51.9
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
.++..+...-..++. +++-|.+++..++.+ +-++++|+.|+|||...- ++...+.. .+..+++++||-.-+..
T Consensus 338 ~~~~~~~~~l~~~~~-Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~----~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 338 VSPPIVDAAIDQHYR-LSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA----AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCHHHHHHHHhccCC-CCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh----CCCeEEEEeCcHHHHHH
Confidence 444443333334444 899999999999885 458999999999995422 23333332 36789999999887766
Q ss_pred HHH
Q psy18032 123 TFK 125 (333)
Q Consensus 123 ~~~ 125 (333)
+.+
T Consensus 412 L~~ 414 (744)
T TIGR02768 412 LQA 414 (744)
T ss_pred HHh
Confidence 643
No 213
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.85 E-value=0.092 Score=50.69 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=49.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCc-eEEEEc-cc-HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGV-RALILS-PT-RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~-~~lil~-Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (333)
.-+.++||||+|||.+...-+-..... .|. ++.++. =+ +.=+ .+.++.+++..++.+.............
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~----~G~~kV~LI~~Dt~RigA---~EQLr~~AeilGVpv~~~~~~~Dl~~aL 329 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMR----HGASKVALLTTDSYRIGG---HEQLRIYGKILGVPVHAVKDAADLRLAL 329 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHh----cCCCeEEEEeCCccchhH---HHHHHHHHHHhCCCeeccCCchhHHHHH
Confidence 448899999999996555333222122 121 333332 22 2223 3445555555676665554444444444
Q ss_pred HHhhCCCCEEEECchHHH
Q psy18032 152 ARLHASPDIVVATPGRFL 169 (333)
Q Consensus 152 ~~l~~~~~IlI~TP~rll 169 (333)
..+.+.-.++|-|+++..
T Consensus 330 ~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 330 SELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred HhccCCCeEEeCCCCcCh
Confidence 555555678999999654
No 214
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.18 Score=47.12 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=46.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (333)
++-++++||+|+|||....--+.. +.. .+.++.++.- -|.=+ .++++.++...++.+..........+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~----~g~~V~lItaDtyR~gA---veQLk~yae~lgvpv~~~~dp~dL~~al 277 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLK----QNRTVGFITTDTFRSGA---VEQFQGYADKLDVELIVATSPAELEEAV 277 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH----cCCeEEEEeCCccCccH---HHHHHHHhhcCCCCEEecCCHHHHHHHH
Confidence 456899999999999654433332 222 1344555443 23222 2345556666676655332222222222
Q ss_pred HHhh--CC-CCEEEECchHHH
Q psy18032 152 ARLH--AS-PDIVVATPGRFL 169 (333)
Q Consensus 152 ~~l~--~~-~~IlI~TP~rll 169 (333)
..+. ++ -.|+|=||++..
T Consensus 278 ~~l~~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred HHHHhcCCCCEEEEECCCCCc
Confidence 3333 23 458899999854
No 215
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.76 E-value=0.14 Score=50.85 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=48.7
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHH--HHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACF--LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~--~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.+.|..++..++..+-.+++|+.|||||... ++..+..... ...+.++++.+||-.=+..+.+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 3789999999999999999999999999643 2333332221 11135799999999888877776654
No 216
>PRK12377 putative replication protein; Provisional
Probab=94.76 E-value=0.24 Score=43.64 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=29.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
.++++.||+|+|||.... ++.+.+.. ++..+ +.++..+|..++...
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~----~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLA----KGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH----cCCCe-EEEEHHHHHHHHHHH
Confidence 579999999999995333 33344443 24334 555667777766543
No 217
>KOG1133|consensus
Probab=94.67 E-value=0.049 Score=53.66 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=37.3
Q ss_pred CCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhh
Q psy18032 57 YKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTH 102 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~ 102 (333)
|+ |+.||.+.+..+. .|+=.|..+|||+|||++.+-+++..+...
T Consensus 14 y~-PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 14 YT-PYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CC-chhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 44 8999988776654 588899999999999999998888887653
No 218
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.64 E-value=0.16 Score=50.68 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=49.4
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHH--HHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACF--LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~--~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.++|..|+...+..+-.++.|++|+|||... ++..+..... ....++++.+||..=|..+.+.+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~---~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLAD---GERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC---CCCcEEEEECCcHHHHHHHHHHHHh
Confidence 5899999999999889999999999999643 2333322211 1235788999999988888776654
No 219
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.60 E-value=0.74 Score=43.96 Aligned_cols=86 Identities=23% Similarity=0.240 Sum_probs=45.6
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH---
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ--- 150 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 150 (333)
-+++++++|+|||....--+...... .+.+++++.- .|.-+.++ ++.++...++.+.....+.+..+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~----~g~kV~lV~~D~~R~~a~~Q---L~~~a~~~gvp~~~~~~~~~P~~i~~~ 173 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK----QGKKVLLVACDLYRPAAIEQ---LKVLGQQVGVPVFALGKGQSPVEIARR 173 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh----CCCeEEEEeccccchHHHHH---HHHHHHhcCCceEecCCCCCHHHHHHH
Confidence 38899999999997654333322111 2345555543 34444443 333444466665544433333211
Q ss_pred -HHHh-hCCC-CEEEECchHH
Q psy18032 151 -FARL-HASP-DIVVATPGRF 168 (333)
Q Consensus 151 -~~~l-~~~~-~IlI~TP~rl 168 (333)
.+.. .+++ .|+|=||+++
T Consensus 174 al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 174 ALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHhcCCCEEEEeCCCcc
Confidence 1222 3355 4889999976
No 220
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.58 E-value=0.12 Score=50.44 Aligned_cols=94 Identities=23% Similarity=0.186 Sum_probs=60.2
Q ss_pred cccCCCHHHH-HHHHhCCCCCCcH----HHHhHHHHHhcCC--cEEEECCCCcHHHHHHHHHHHHHhhhhcc-cCCceEE
Q psy18032 40 QSFGLGFEVL-KGVLKRGYKIPTP----IQRKTIPLVLEGR--DVVAMARTGSGKTACFLIPMLEKLKTHAA-TSGVRAL 111 (333)
Q Consensus 40 ~~~~l~~~l~-~~l~~~g~~~~~~----~Q~~~i~~i~~g~--d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~l 111 (333)
.+.+..++++ ..|++.-=..++. +|.+==+.+..-+ =++|+|..|||||.+++--+.-.+..... -.+..+|
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vl 264 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVL 264 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceE
Confidence 4456666654 4565542222322 4444434444434 49999999999998877544444443221 1133499
Q ss_pred EEcccHHHHHHHHHHHHHHhcc
Q psy18032 112 ILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~ 133 (333)
|+.|.+-++.-+.+++-.++..
T Consensus 265 vl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred EEcCcHHHHHHHHHhchhhccC
Confidence 9999999999999999998753
No 221
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.57 E-value=0.067 Score=46.87 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|..+++.||+|+|||...+--+...+.. +-.+++++ +.+-..++.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~-----ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-----GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 5779999999999997555444444433 55677877 5667788888887754
No 222
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.57 E-value=0.12 Score=47.62 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=29.8
Q ss_pred HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
+..+++++++|+||||||. ++-+++..+.. .-+.+.+=-+.||.
T Consensus 157 v~~~~nili~G~tgSGKTT-ll~aL~~~ip~-----~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTT-FTNAALREIPA-----IERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHH-HHHHHHhhCCC-----CCeEEEecCCCccc
Confidence 5568899999999999995 44555555543 33566655555553
No 223
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.54 E-value=0.33 Score=43.47 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=45.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH--
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ-- 150 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-- 150 (333)
+-+.+++|+|+|||....--+... .. .+.+++++. +.|.-+.++.. .++...++.+.....+.+....
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~----~g~~V~li~~D~~r~~a~~ql~---~~~~~~~i~~~~~~~~~dp~~~~~ 144 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK----QGKSVLLAAGDTFRAAAIEQLE---EWAKRLGVDVIKQKEGADPAAVAF 144 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh----cCCEEEEEeCCCCCHHHHHHHH---HHHHhCCeEEEeCCCCCCHHHHHH
Confidence 347788999999996554333322 22 245666665 33444443333 3333345544332222222111
Q ss_pred --HH-HhhCCCC-EEEECchHHH
Q psy18032 151 --FA-RLHASPD-IVVATPGRFL 169 (333)
Q Consensus 151 --~~-~l~~~~~-IlI~TP~rll 169 (333)
.. ...++++ |+|=||+++.
T Consensus 145 ~~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 145 DAIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCc
Confidence 11 1234566 8899999875
No 224
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.54 E-value=0.47 Score=41.72 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=27.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
..+++.|++|+|||.... ++...+.. .+..++++ +..+|...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~----~g~~v~~i-t~~~l~~~l~~ 144 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL----RGKSVLII-TVADIMSAMKD 144 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh----cCCeEEEE-EHHHHHHHHHH
Confidence 479999999999996444 34444443 24445544 55556554433
No 225
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.51 E-value=0.097 Score=48.98 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
+..++++||||||||. .+-.++..+..
T Consensus 149 ~GlilI~G~TGSGKTT-~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKST-LAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHH-HHHHHHHHHHh
Confidence 3468999999999995 34555665543
No 226
>KOG0926|consensus
Probab=94.50 E-value=0.32 Score=49.00 Aligned_cols=98 Identities=26% Similarity=0.272 Sum_probs=57.8
Q ss_pred HhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-----ccCCceEEEEcccHHHHHHHHHHHH-HHhccCCceE
Q psy18032 65 RKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-----ATSGVRALILSPTRELALQTFKFVK-ELGKFTKLQS 138 (333)
Q Consensus 65 ~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~ 138 (333)
++++++|...-=+++||.||||||. ++| +.++... ...++..=|--|.|--|..+.++.. +++. .+-.|
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eV 336 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEV 336 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Cccce
Confidence 3445555554459999999999995 444 3333311 1123345566688877777765554 4444 34344
Q ss_pred EEE--ECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc
Q psy18032 139 TCL--LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM 175 (333)
Q Consensus 139 ~~~--~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~ 175 (333)
... +.|.- .....|.+.|-|-|+.-+.+.
T Consensus 337 sYqIRfd~ti--------~e~T~IkFMTDGVLLrEi~~D 367 (1172)
T KOG0926|consen 337 SYQIRFDGTI--------GEDTSIKFMTDGVLLREIEND 367 (1172)
T ss_pred eEEEEecccc--------CCCceeEEecchHHHHHHHHh
Confidence 332 22221 124679999999999777654
No 227
>PRK06921 hypothetical protein; Provisional
Probab=94.49 E-value=0.38 Score=42.94 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=29.1
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
.+.++++.|++|+|||.... ++...+... .+..++++ +..++..++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~---~g~~v~y~-~~~~l~~~l~~ 163 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK---KGVPVLYF-PFVEGFGDLKD 163 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh---cCceEEEE-EHHHHHHHHHH
Confidence 35789999999999995332 344444431 14455554 45566555543
No 228
>KOG0329|consensus
Probab=94.43 E-value=0.024 Score=49.19 Aligned_cols=77 Identities=26% Similarity=0.414 Sum_probs=54.1
Q ss_pred hCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhcccc-ceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEE
Q psy18032 155 HASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKL-QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 233 (333)
Q Consensus 155 ~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~-~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~ 233 (333)
...+.++|....|-+.....+. ...+.+++|. +..+.+++..+...-+.+++.|+|+++||||+..+
T Consensus 108 ~g~vsvlvmchtrelafqi~~e------------y~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilAL 175 (387)
T KOG0329|consen 108 DGQVSVLVMCHTRELAFQISKE------------YERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILAL 175 (387)
T ss_pred CCeEEEEEEeccHHHHHHHHHH------------HHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHH
Confidence 3357788888888887776665 6777778875 44555555566677777888999999999987666
Q ss_pred EEecchhhhh
Q psy18032 234 VVEMELKLSS 243 (333)
Q Consensus 234 ~~~~~~k~~~ 243 (333)
+.+...+++.
T Consensus 176 vr~k~l~lk~ 185 (387)
T KOG0329|consen 176 VRNRSLNLKN 185 (387)
T ss_pred HHhccCchhh
Confidence 5554444433
No 229
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.40 E-value=0.028 Score=52.99 Aligned_cols=47 Identities=30% Similarity=0.318 Sum_probs=38.0
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+++++||||||||.++++|-+... +..++|.-|--|+........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------CCCEEEEccchhHHHHHHHHHHH
Confidence 478999999999999998876532 34699999999999877766665
No 230
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.36 E-value=0.045 Score=53.07 Aligned_cols=49 Identities=33% Similarity=0.441 Sum_probs=39.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.++++.||||||||..+++|.+-. . ..-+||.-|--||.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~-----~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y-----PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c-----cCCEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999999997743 2 226889999999988887777663
No 231
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=94.33 E-value=0.11 Score=52.52 Aligned_cols=89 Identities=18% Similarity=0.270 Sum_probs=51.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHHH--HhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc------cCCceEEEEECCcc
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLE--KLKTHAATSGVRALILSPTRELALQTFKFVKELGK------FTKLQSTCLLGGDS 146 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~--~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~~~~~~~g~~~ 146 (333)
-|+=|.+.||+|||.||+=-+.. +... -.+-||+|||.+.-.-++...+.... +-+.+.-.+.-+..
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG-----~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~ 149 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYG-----LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDED 149 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhC-----ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechH
Confidence 36889999999999999865543 3222 35789999999876554443333221 12334333333322
Q ss_pred hHHHHHHhhCCCCEEEECchHH
Q psy18032 147 MDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 147 ~~~~~~~l~~~~~IlI~TP~rl 168 (333)
.........+.|.+++.|-..+
T Consensus 150 ~~~~~~~~~~~~~vLl~~~~Af 171 (985)
T COG3587 150 IEKFKFKSNNKPCVLLIFVSAF 171 (985)
T ss_pred HHHHhhccCCCceEEEEehhhh
Confidence 2222222334577777775433
No 232
>PRK13764 ATPase; Provisional
Probab=94.26 E-value=0.12 Score=51.26 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=20.8
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
.+++++++||||||||. ++-+++..+..
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~~ 283 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYAD 283 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHhh
Confidence 46789999999999996 44555555543
No 233
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=94.26 E-value=0.026 Score=54.55 Aligned_cols=35 Identities=49% Similarity=0.707 Sum_probs=30.3
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.+|.++++.++.-++.||+|||++|++|+++.+..
T Consensus 31 ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~ 65 (456)
T PRK10590 31 AIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 65 (456)
T ss_pred HHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 45667777888899999999999999999999865
No 234
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.25 E-value=0.13 Score=52.74 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=55.0
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
..+++-|.+++... ...++|.|..|||||.+..--+...+.... -..-+.|+++-|+.-|.++.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 45899999998753 457999999999999877766666654321 112479999999999999999998764
No 235
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.22 E-value=0.1 Score=44.31 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=43.6
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHH----H
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN----Q 150 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~----~ 150 (333)
++++||||+|||....=-+...... +.++.+++- .|.=+.+ +++.+++.+++.+.......+..+ .
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-----~~~v~lis~D~~R~ga~e---QL~~~a~~l~vp~~~~~~~~~~~~~~~~~ 75 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-----GKKVALISADTYRIGAVE---QLKTYAEILGVPFYVARTESDPAEIAREA 75 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-----T--EEEEEESTSSTHHHH---HHHHHHHHHTEEEEESSTTSCHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-----cccceeecCCCCCccHHH---HHHHHHHHhccccchhhcchhhHHHHHHH
Confidence 6789999999996554222222222 233444442 3433443 455555567777665544433222 1
Q ss_pred HHHhh-CC-CCEEEECchHHH
Q psy18032 151 FARLH-AS-PDIVVATPGRFL 169 (333)
Q Consensus 151 ~~~l~-~~-~~IlI~TP~rll 169 (333)
.+... ++ --|+|=||++-.
T Consensus 76 l~~~~~~~~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 76 LEKFRKKGYDLVLIDTAGRSP 96 (196)
T ss_dssp HHHHHHTTSSEEEEEE-SSSS
T ss_pred HHHHhhcCCCEEEEecCCcch
Confidence 22222 23 347789998754
No 236
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.21 E-value=0.096 Score=43.67 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
+++.||+|+|||...+--+...+. .+..+++++ +.+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----~g~~v~~~s-~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----RGEPGLYVT-LEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----CCCcEEEEE-CCCCHHHHHHHHHHcC
Confidence 689999999999755433333332 255677775 4566777777777653
No 237
>KOG0337|consensus
Probab=94.18 E-value=0.067 Score=49.78 Aligned_cols=82 Identities=44% Similarity=0.696 Sum_probs=68.9
Q ss_pred CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEe
Q psy18032 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 236 (333)
Q Consensus 157 ~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~ 236 (333)
+.+-+|.+|.+-+++..-+. ..++.+....+..+++++..+.++...+..+|+++++||+++.|...+
T Consensus 90 g~RalilsptreLa~qtlkv------------vkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve 157 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKV------------VKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE 157 (529)
T ss_pred ccceeeccCcHHHHHHHHHH------------HHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh
Confidence 46889999999888877554 788888888888888999999999999999999999999999999988
Q ss_pred cchhhhhHHHHhhc
Q psy18032 237 MELKLSSIQLSLTD 250 (333)
Q Consensus 237 ~~~k~~~l~lif~~ 250 (333)
...+++.+.+|+.+
T Consensus 158 m~l~l~sveyVVfd 171 (529)
T KOG0337|consen 158 MTLTLSSVEYVVFD 171 (529)
T ss_pred eeccccceeeeeeh
Confidence 77777766555444
No 238
>KOG1805|consensus
Probab=94.17 E-value=0.41 Score=49.23 Aligned_cols=79 Identities=19% Similarity=0.114 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
.+.|.+.+. -+..++..|.+|+-.++..+| .++.|=+|+|||......+-.-+. .|.++|+.+-|..=+.
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-----~gkkVLLtsyThsAVD 727 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA-----LGKKVLLTSYTHSAVD 727 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH-----cCCeEEEEehhhHHHH
Confidence 345544442 234688899999999999998 889999999999654433322222 3668999999988777
Q ss_pred HHHHHHHHH
Q psy18032 122 QTFKFVKEL 130 (333)
Q Consensus 122 q~~~~~~~~ 130 (333)
.+.-.++.+
T Consensus 728 NILiKL~~~ 736 (1100)
T KOG1805|consen 728 NILIKLKGF 736 (1100)
T ss_pred HHHHHHhcc
Confidence 777777763
No 239
>PRK10436 hypothetical protein; Provisional
Probab=94.16 E-value=0.24 Score=47.81 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=25.6
Q ss_pred HHHHhHHHHHhcCC--cEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 62 PIQRKTIPLVLEGR--DVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 62 ~~Q~~~i~~i~~g~--d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
+.|.+.+..++... -++++||||||||... ..++..+..
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 44555555555433 4999999999999644 455666543
No 240
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.12 E-value=0.085 Score=50.52 Aligned_cols=40 Identities=33% Similarity=0.464 Sum_probs=30.6
Q ss_pred cHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 61 TPIQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
++.|...+..+++... +++.||||||||. -+..+++.+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTT-TLY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTT-TLYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHH-HHHHHHHHhcC
Confidence 5677777777777655 8999999999995 45667777665
No 241
>PRK06526 transposase; Provisional
Probab=94.11 E-value=0.098 Score=46.33 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=28.2
Q ss_pred HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
+-.+.+++++||+|+|||....--....... |..+++. +..+++.++
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~-----g~~v~f~-t~~~l~~~l 141 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQA-----GHRVLFA-TAAQWVARL 141 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHC-----CCchhhh-hHHHHHHHH
Confidence 3456799999999999996554333322222 4455553 344455554
No 242
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.11 E-value=0.14 Score=48.53 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=51.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
|.-+.++||||+|||.....-+-..+..... ..-+++...+.-. --.+++..+++..|+.+...............
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~--~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~v~~~~dl~~al~~ 266 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGA--DKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE 266 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEecCCcch--hHHHHHHHHHHHcCCceecCCCHHHHHHHHHH
Confidence 3448999999999996554322222222111 1234555555332 22333555556667777665555544444455
Q ss_pred hhCCCCEEEECchHHH
Q psy18032 154 LHASPDIVVATPGRFL 169 (333)
Q Consensus 154 l~~~~~IlI~TP~rll 169 (333)
+.+.-.++|-|+++..
T Consensus 267 l~~~d~VLIDTaGrsq 282 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQ 282 (420)
T ss_pred hcCCCEEEecCCCCCc
Confidence 5555678899987754
No 243
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.09 E-value=0.76 Score=41.06 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc-c-H-HHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP-T-R-ELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P-t-~-~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
+..+.+++|+|+|||..+..-+... .. .+..+.++.- + + ..+.| ++.++...++.+..........+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l-~~----~~~~v~~i~~D~~ri~~~~q----l~~~~~~~~~~~~~~~~~~~l~~~ 145 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF-HG----KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVIAVRDEAAMTRA 145 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HH----cCCeEEEEecCCCCHHHHHH----HHHHhhhcCceEEecCCHHHHHHH
Confidence 3568999999999997665443332 22 1334444443 2 2 23333 444444456666544333333333
Q ss_pred HHHhhC--CC-CEEEECchHHH
Q psy18032 151 FARLHA--SP-DIVVATPGRFL 169 (333)
Q Consensus 151 ~~~l~~--~~-~IlI~TP~rll 169 (333)
.+.+.+ ++ .|+|=||++..
T Consensus 146 l~~l~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 146 LTYFKEEARVDYILIDTAGKNY 167 (270)
T ss_pred HHHHHhcCCCCEEEEECCCCCc
Confidence 333432 33 47788999863
No 244
>KOG0333|consensus
Probab=94.03 E-value=0.024 Score=54.01 Aligned_cols=35 Identities=46% Similarity=0.722 Sum_probs=31.4
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhcc
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~ 327 (333)
..||.+++..++.+++.||||||.||++|+|..|-
T Consensus 274 ~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 274 QAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred hhccchhccCCeeeEEeccCCccccchhhHHHHHH
Confidence 57888888889999999999999999999987664
No 245
>PRK08181 transposase; Validated
Probab=94.01 E-value=0.22 Score=44.46 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=34.6
Q ss_pred cHHHHhHHHH----HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 61 TPIQRKTIPL----VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 61 ~~~Q~~~i~~----i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
.+.|..++.. +-.+++++++||+|+|||..... +...+.. .|..+++ .+..+|+.++.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~----~g~~v~f-~~~~~L~~~l~ 150 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIE----NGWRVLF-TRTTDLVQKLQ 150 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHH----cCCceee-eeHHHHHHHHH
Confidence 4455555532 34678999999999999954432 2233332 2444544 45566776653
No 246
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.99 E-value=0.37 Score=45.85 Aligned_cols=84 Identities=18% Similarity=0.267 Sum_probs=46.5
Q ss_pred EEEECCCCcHHHHHHH-HHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcch----HH
Q psy18032 77 VVAMARTGSGKTACFL-IPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSM----DN 149 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~----~~ 149 (333)
++++|++|+|||.... ++.. +.. .+.++++++- .|.-+.++ ++.++...++.+....++.+. .+
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~--l~~----~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~~~~~~~~dp~~i~~~ 173 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYY--YQR----KGFKPCLVCADTFRAGAFDQ---LKQNATKARIPFYGSYTESDPVKIASE 173 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHH----CCCCEEEEcCcccchhHHHH---HHHHhhccCCeEEeecCCCCHHHHHHH
Confidence 7899999999985443 4432 222 2445666553 35445444 344444567766655544332 12
Q ss_pred HHHHhh-CCCC-EEEECchHHH
Q psy18032 150 QFARLH-ASPD-IVVATPGRFL 169 (333)
Q Consensus 150 ~~~~l~-~~~~-IlI~TP~rll 169 (333)
..+.+. ++++ |+|=||+|+.
T Consensus 174 ~l~~~~~~~~DvViIDTaGr~~ 195 (429)
T TIGR01425 174 GVEKFKKENFDIIIVDTSGRHK 195 (429)
T ss_pred HHHHHHhCCCCEEEEECCCCCc
Confidence 223332 2444 7789999864
No 247
>KOG0326|consensus
Probab=93.78 E-value=0.016 Score=51.96 Aligned_cols=40 Identities=35% Similarity=0.623 Sum_probs=36.1
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFN 332 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~ 332 (333)
.+||..+.+.++.-.+.-|.|||.||++|+|+++|++...
T Consensus 114 esIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~ 153 (459)
T KOG0326|consen 114 ESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNV 153 (459)
T ss_pred cccceeecchhhhhhccCCCCCccceechhhhhcCccccc
Confidence 4799999999999888999999999999999999997653
No 248
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.73 E-value=0.039 Score=55.40 Aligned_cols=36 Identities=50% Similarity=0.790 Sum_probs=31.2
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
.+|.++++.++...+.||+|||.+|++|+++.++..
T Consensus 36 ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~ 71 (629)
T PRK11634 36 CIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE 71 (629)
T ss_pred HHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc
Confidence 456677778899999999999999999999998764
No 249
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.70 E-value=0.034 Score=54.05 Aligned_cols=35 Identities=34% Similarity=0.561 Sum_probs=30.4
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.++.+.++.++...+.||+|||++|++|+++++..
T Consensus 117 ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~ 151 (475)
T PRK01297 117 VLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQ 151 (475)
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 46677778888889999999999999999998864
No 250
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.64 E-value=0.24 Score=44.15 Aligned_cols=45 Identities=31% Similarity=0.403 Sum_probs=29.1
Q ss_pred HHhCCCCCCcHHHHhHHHHHhc-CC-cEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 52 VLKRGYKIPTPIQRKTIPLVLE-GR-DVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 52 l~~~g~~~~~~~Q~~~i~~i~~-g~-d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
|.++|+ .+.|.+.+..++. .+ .+++.|+||||||.. +..++..+.
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~ 105 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELN 105 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhC
Confidence 455554 4556666666554 33 489999999999963 344555553
No 251
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.60 E-value=0.12 Score=43.35 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=25.5
Q ss_pred CcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHH
Q psy18032 60 PTPIQRKTIPL-VLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 60 ~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.++-|.+.+.. +..|..+++++|||||||...
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 46777777777 555889999999999999643
No 252
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=93.59 E-value=0.3 Score=46.55 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=32.7
Q ss_pred HHhhcchhhHHHHHHHhc--CCCcccccc---ch---HHHhhhCCCCcccccccc
Q psy18032 246 LSLTDFKQDTSRIALDLV--GDSTEMIHK---QR---QSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 246 lif~~~~~~~~~l~~~L~--g~~~~~lh~---~r---~~l~~f~~g~~~vLvaTd 292 (333)
+||+++=-+--+|-+.|+ +++...+|. .. ++-..|.+|+..+|+-|.
T Consensus 304 LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TE 358 (442)
T PF06862_consen 304 LIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTE 358 (442)
T ss_pred EEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEh
Confidence 556665555555666665 666677775 22 334889999999999997
No 253
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.53 E-value=0.081 Score=52.64 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=43.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEE
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCL 141 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 141 (333)
+++++.||||||||..+++|-+... +.-+||+=|--|+........++. |.+|.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------EDSVVVHDIKLENYELTSGWREKQ----GQKVFVW 214 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEE
Confidence 4799999999999999999988753 235899999999998888776663 4444444
No 254
>KOG1132|consensus
Probab=93.48 E-value=0.29 Score=49.71 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=55.0
Q ss_pred hCCCCCCcHHHHhHHHHHhc----CCcEEEECCCCcHHHHHHHHHHHHHhhhhc--------------------c-----
Q psy18032 54 KRGYKIPTPIQRKTIPLVLE----GRDVVAMARTGSGKTACFLIPMLEKLKTHA--------------------A----- 104 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--------------------~----- 104 (333)
++.|+ |++.|...+..++. +.|.++..|||+|||++.+-..|.....-. .
T Consensus 17 ~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 34555 89999988877766 478999999999999888766665432210 0
Q ss_pred ------c------CCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 105 ------T------SGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 105 ------~------~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
. .-|+..+-+-|..-..|+.+.+++.+
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 13567777778888888888888754
No 255
>PRK14974 cell division protein FtsY; Provisional
Probab=93.43 E-value=2 Score=39.63 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=43.6
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc--HHHHHHHHHHHHHHhccCCceEEEEECCcchHH----H
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT--RELALQTFKFVKELGKFTKLQSTCLLGGDSMDN----Q 150 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt--~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~----~ 150 (333)
++++|++|+|||....--+ ..+.. .+.+++++... |.=+.++ ++.++...++.+.....+.+... .
T Consensus 143 i~~~G~~GvGKTTtiakLA-~~l~~----~g~~V~li~~Dt~R~~a~eq---L~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLA-YYLKK----NGFSVVIAAGDTFRAGAIEQ---LEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred EEEEcCCCCCHHHHHHHHH-HHHHH----cCCeEEEecCCcCcHHHHHH---HHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 8899999999996444322 22322 24466666543 2333332 33333345666554333332221 1
Q ss_pred HHH-hhCCC-CEEEECchHHH
Q psy18032 151 FAR-LHASP-DIVVATPGRFL 169 (333)
Q Consensus 151 ~~~-l~~~~-~IlI~TP~rll 169 (333)
.+. ...+. -|||=|++++.
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHHHhCCCCEEEEECCCccC
Confidence 111 12234 47789999874
No 256
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.41 E-value=0.39 Score=45.97 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=45.0
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc--HHHHHHHHHHHHHHhccCCceEEEEECCcchHH----
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT--RELALQTFKFVKELGKFTKLQSTCLLGGDSMDN---- 149 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt--~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---- 149 (333)
-++++|++|+|||....--+. .+.. .+.++++++.- +.-+ .++++.++...++.+...........
T Consensus 97 vI~lvG~~GsGKTTtaakLA~-~L~~----~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d~~~i~~~ 168 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLAR-YFKK----KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKDAVEIAKE 168 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHH----cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 488999999999965543332 2332 24455555432 3333 33344444456666543322222211
Q ss_pred HHHHhhCCCCEEEECchHHH
Q psy18032 150 QFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 150 ~~~~l~~~~~IlI~TP~rll 169 (333)
..+.....--|||=||+++.
T Consensus 169 al~~~~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 169 GLEKFKKADVIIVDTAGRHA 188 (437)
T ss_pred HHHHhhcCCEEEEECCCccc
Confidence 12222333457889998765
No 257
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.34 E-value=0.17 Score=47.12 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=37.8
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
-++|.|..|||||+..+--+-. +.. ...+..++++++..+|...+.+.+..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l~~--~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-LQN--SEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-hhc--cccCCceEEEEecchHHHHHHHHHhh
Confidence 3789999999999765533333 311 12366899999999999988888876
No 258
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.27 E-value=0.2 Score=48.65 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=29.8
Q ss_pred HHhCCCCCCcHHHHhHHHHHhcCC-c-EEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 52 VLKRGYKIPTPIQRKTIPLVLEGR-D-VVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 52 l~~~g~~~~~~~Q~~~i~~i~~g~-d-~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
|.++|| .+-|.+.+..++... . ++++||||||||... ..++..+..
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~~ 268 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLNT 268 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccCC
Confidence 444554 455666777666543 3 789999999999543 445666543
No 259
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.056 Score=48.73 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.7
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.|+++.+|||||||+.+.
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 479999999999997655
No 260
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.21 E-value=0.24 Score=46.17 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=19.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
.+.-++++||||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4567999999999999643 44555554
No 261
>KOG0344|consensus
Probab=93.17 E-value=0.44 Score=46.19 Aligned_cols=99 Identities=12% Similarity=0.176 Sum_probs=76.5
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH---
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR--- 153 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--- 153 (333)
++-+.-.+.||+..-++++.+.+... -.|.+||.+-+.+-|.|.++.+. .+.++.+..++|+.+..+.-+.
T Consensus 360 ~V~QelvF~gse~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 360 TVDQELVFCGSEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred hhhhhheeeecchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHH
Confidence 33444567888888888888887763 35679999999999999999887 3578999999999765544333
Q ss_pred hhC-CCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 154 LHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 154 l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
++. ...++||| +++.++ +++.++++++-
T Consensus 434 FR~g~IwvLicT-----dll~RG-iDf~gvn~VIn 462 (593)
T KOG0344|consen 434 FRIGKIWVLICT-----DLLARG-IDFKGVNLVIN 462 (593)
T ss_pred HhccCeeEEEeh-----hhhhcc-ccccCcceEEe
Confidence 333 47899999 888887 89999999884
No 262
>PRK10867 signal recognition particle protein; Provisional
Probab=93.14 E-value=1.5 Score=42.04 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=44.8
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH--
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA-- 152 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 152 (333)
+++++++|+|||....--+.. +.. ..+.+++++. +.|.-+.++. +.++...++.+.....+.+..+...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~-l~~---~~G~kV~lV~~D~~R~aa~eQL---~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKY-LKK---KKKKKVLLVAADVYRPAAIEQL---KTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHH-HHH---hcCCcEEEEEccccchHHHHHH---HHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 789999999999655433322 222 1134555554 3444444333 3344456766554422223222211
Q ss_pred --Hh-hCCC-CEEEECchHHH
Q psy18032 153 --RL-HASP-DIVVATPGRFL 169 (333)
Q Consensus 153 --~l-~~~~-~IlI~TP~rll 169 (333)
.. ..++ -|||=||+|+.
T Consensus 176 ~~~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHHHhcCCCEEEEeCCCCcc
Confidence 11 2345 47889999873
No 263
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.13 E-value=0.83 Score=41.90 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=43.4
Q ss_pred CcEEEECCCCcHHHHHHH-HHHHHHhhhhcccCCceEEEEc-c-cHHHHHHHHHHHHHHhccCCceEEEEECCcch-HHH
Q psy18032 75 RDVVAMARTGSGKTACFL-IPMLEKLKTHAATSGVRALILS-P-TRELALQTFKFVKELGKFTKLQSTCLLGGDSM-DNQ 150 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~lil~-P-t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 150 (333)
+-+.++||+|+|||.... ++... .. .+.+++++. . .+.-+.++...+.. ..++.+.....+.+. ...
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l--~~----~g~~V~Li~~D~~r~~a~eql~~~a~---~~~i~~~~~~~~~dpa~~v 185 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKY--KA----QGKKVLLAAGDTFRAAAIEQLQVWGE---RVGVPVIAQKEGADPASVA 185 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH--Hh----cCCeEEEEecCccchhhHHHHHHHHH---HcCceEEEeCCCCCHHHHH
Confidence 347889999999995443 33222 12 244566654 2 34444444333332 345554433322222 111
Q ss_pred H----HHhhCCC-CEEEECchHHH
Q psy18032 151 F----ARLHASP-DIVVATPGRFL 169 (333)
Q Consensus 151 ~----~~l~~~~-~IlI~TP~rll 169 (333)
. ....+++ .|+|=||+++.
T Consensus 186 ~~~l~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 186 FDAIQAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCc
Confidence 1 1223444 47789999864
No 264
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.10 E-value=0.41 Score=47.64 Aligned_cols=71 Identities=17% Similarity=0.345 Sum_probs=55.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++|+..+.++++.+.. .++.+..++|+.+..++.+.+. + ..+|||+| +.+..+ +++.++
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~----~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~arG-IDip~V 326 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLER----HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAARG-LHIDGV 326 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhcC-CCccCC
Confidence 56899999999999999998876 4788999999988766554443 2 48999999 555544 678888
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 327 ~~VIn 331 (572)
T PRK04537 327 KYVYN 331 (572)
T ss_pred CEEEE
Confidence 87774
No 265
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=93.08 E-value=0.42 Score=48.75 Aligned_cols=103 Identities=22% Similarity=0.231 Sum_probs=81.3
Q ss_pred CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
|+. |..+|.- -.+.-...-++-+.||=|||+++.+|+.-.... |..+.++.-.--||.--.+++..+..++|
T Consensus 78 g~~-~~dVQli--G~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~-----gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMR-HFDVQLL--GGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA-----GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCC-hhhHHHh--hhhhhcCCceeeeecCCchHHHHHHHHHHHhcC-----CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 555 4555544 444445567899999999999999998766555 44688999999999999999999999999
Q ss_pred ceEEEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
+.+.+...+.+..++.... .|+|..+|-..+
T Consensus 150 lsvG~~~~~m~~~ek~~aY--~~DItY~TnnEl 180 (822)
T COG0653 150 LSVGVILAGMSPEEKRAAY--ACDITYGTNNEL 180 (822)
T ss_pred CceeeccCCCChHHHHHHH--hcCceecccccc
Confidence 9999999998776654433 589999998765
No 266
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=93.05 E-value=0.049 Score=55.79 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=29.5
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.++.+.++.++.-...||||||++|+||+|+++..
T Consensus 44 ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~ 78 (742)
T TIGR03817 44 AAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD 78 (742)
T ss_pred HHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 45666677788888899999999999999999854
No 267
>KOG0387|consensus
Probab=92.90 E-value=0.98 Score=45.59 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=55.7
Q ss_pred CCcHHHHhHHHHHhc----CCcEEEECCCCcHHH--HHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 59 IPTPIQRKTIPLVLE----GRDVVAMARTGSGKT--ACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT--~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
.+.++|++.+.-+.+ +..-|+--.-|-||| .+.+|+.+++-.. -...+|||||.. ++.|..+.+..+.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k----~~~paLIVCP~T-ii~qW~~E~~~w~- 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGK----LTKPALIVCPAT-IIHQWMKEFQTWW- 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccc----ccCceEEEccHH-HHHHHHHHHHHhC-
Confidence 457788887765543 456777788999999 3444555554321 124699999986 5677777788754
Q ss_pred cCCceEEEEECCcc
Q psy18032 133 FTKLQSTCLLGGDS 146 (333)
Q Consensus 133 ~~~~~~~~~~g~~~ 146 (333)
+..++..++|..+
T Consensus 279 -p~~rv~ilh~t~s 291 (923)
T KOG0387|consen 279 -PPFRVFILHGTGS 291 (923)
T ss_pred -cceEEEEEecCCc
Confidence 5678888887655
No 268
>KOG0341|consensus
Probab=92.83 E-value=0.037 Score=50.90 Aligned_cols=31 Identities=45% Similarity=0.792 Sum_probs=29.1
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhh
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~ 323 (333)
..+|.++.+.++.+|+=||||||+.|+||++
T Consensus 199 QGlPvvLsGRDmIGIAfTGSGKTlvFvLP~i 229 (610)
T KOG0341|consen 199 QGLPVVLSGRDMIGIAFTGSGKTLVFVLPVI 229 (610)
T ss_pred cCcceEeecCceeeEEeecCCceEEEeHHHH
Confidence 6789999999999999999999999999974
No 269
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.80 E-value=0.35 Score=44.21 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=32.0
Q ss_pred CCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 57 YKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
+..+++.|..-+.. +-++++++++++||||||. ++.+++..+-.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip~ 169 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIPP 169 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCCc
Confidence 45567777665555 6668999999999999994 56666665544
No 270
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=92.80 E-value=0.13 Score=51.95 Aligned_cols=48 Identities=27% Similarity=0.244 Sum_probs=38.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+++++.||||||||..+++|-+-... ..+||+=|--|+........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~-------gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK-------GSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC-------CCEEEEeCCchHHHHHHHHHHh
Confidence 47999999999999999999876532 2588888888888777665554
No 271
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.77 E-value=0.16 Score=45.32 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=46.0
Q ss_pred HHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEE
Q psy18032 64 QRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142 (333)
Q Consensus 64 Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 142 (333)
..+.+.. +..+.+++++|+||||||.. +-.++..+... ..+++++-.+.|+-. ...+.......
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKTT~-l~all~~i~~~----~~~iv~iEd~~E~~l----------~~~~~~~~~~~ 180 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKTTL-LNALLEEIPPE----DERIVTIEDPPELRL----------PGPNQIQIQTR 180 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT----TSEEEEEESSS-S------------SCSSEEEEEEE
T ss_pred HHHHHhhccccceEEEEECCCccccchH-HHHHhhhcccc----ccceEEeccccceee----------cccceEEEEee
Confidence 3334443 45578999999999999963 45556665552 356777777777633 11122122222
Q ss_pred -CCcchHHHH-HHhhCCCCEEEEC
Q psy18032 143 -GGDSMDNQF-ARLHASPDIVVAT 164 (333)
Q Consensus 143 -g~~~~~~~~-~~l~~~~~IlI~T 164 (333)
++.+..+.. ..++.+|++++..
T Consensus 181 ~~~~~~~~~l~~~LR~~pD~iiig 204 (270)
T PF00437_consen 181 RDEISYEDLLKSALRQDPDVIIIG 204 (270)
T ss_dssp TTTBSHHHHHHHHTTS--SEEEES
T ss_pred cCcccHHHHHHHHhcCCCCccccc
Confidence 344444443 3355578877643
No 272
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.75 E-value=1.2 Score=40.97 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=26.4
Q ss_pred cHHHHhHHHHHhcC--C---cEEEECCCCcHHHHHHHHHH
Q psy18032 61 TPIQRKTIPLVLEG--R---DVVAMARTGSGKTACFLIPM 95 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g--~---d~l~~a~TGsGKT~~~~l~~ 95 (333)
+|+|+..|..+... + -.++.||.|.|||..+..-+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a 42 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA 42 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH
Confidence 68888888887743 2 48899999999996555443
No 273
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.73 E-value=0.37 Score=44.71 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=27.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
+..++++||||||||... -.++..+.. ..+.+++.+--..|+.
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~---~~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINK---NAAGHIITIEDPIEYV 164 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCc---CCCCEEEEEcCChhhh
Confidence 467999999999999643 344554443 1234566665555543
No 274
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.71 E-value=0.19 Score=49.97 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=30.0
Q ss_pred HHhCCCCCCcHHHHhHHHHHhcCC--cEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 52 VLKRGYKIPTPIQRKTIPLVLEGR--DVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 52 l~~~g~~~~~~~Q~~~i~~i~~g~--d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
|.++|| .+.|.+.+..++... -++++||||||||... ..++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 455555 355666666655533 4889999999999653 55666664
No 275
>PRK08116 hypothetical protein; Validated
Probab=92.69 E-value=0.73 Score=41.18 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=28.7
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
.+++.|++|+|||..+. ++.+.+.. .+..+ +..+..++..++...
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~----~~~~v-~~~~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE----KGVPV-IFVNFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH----cCCeE-EEEEHHHHHHHHHHH
Confidence 49999999999996444 45555554 13344 444566666655443
No 276
>PTZ00110 helicase; Provisional
Probab=92.69 E-value=1.2 Score=44.22 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=54.2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
.+.++||.++++.-|..+.+.++. .++.+..++|+.+..++...+ ++ ...|||+| +.+.. .+++.+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----dv~~r-GIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----DVASR-GLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----chhhc-CCCccc
Confidence 366899999999999999888875 477888999988776654443 33 47899999 55444 467778
Q ss_pred chhhH
Q psy18032 182 IQYTF 186 (333)
Q Consensus 182 l~~lV 186 (333)
+.++|
T Consensus 446 v~~VI 450 (545)
T PTZ00110 446 VKYVI 450 (545)
T ss_pred CCEEE
Confidence 87777
No 277
>PF12846 AAA_10: AAA-like domain
Probab=92.68 E-value=0.39 Score=43.07 Aligned_cols=42 Identities=31% Similarity=0.538 Sum_probs=30.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
.++++.|+||||||.... .++..+.. .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~----~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR----RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH----cCCCEEEEcCCchHHH
Confidence 478999999999997766 44444443 2677888877766554
No 278
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.67 E-value=1.3 Score=40.67 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCCCcHHHHhHHHHHhc----CC---cEEEECCCCcHHHHHHH
Q psy18032 57 YKIPTPIQRKTIPLVLE----GR---DVVAMARTGSGKTACFL 92 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~----g~---d~l~~a~TGsGKT~~~~ 92 (333)
+..++|+|..++..+.. |+ -.++.||.|+||+..+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 45688999999988764 33 38999999999996444
No 279
>PRK04328 hypothetical protein; Provisional
Probab=92.66 E-value=0.22 Score=43.95 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=35.9
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.|..+++.|++|+|||...+--+.+.+.. +-.+++++ +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~-----ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-----GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-----CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 35679999999999996544434444433 44677766 6666777777777754
No 280
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.58 E-value=1.1 Score=41.22 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=61.6
Q ss_pred CcHHHHhHHHHHhcCC----cEEEECCCCcHHHHHHHHHHHHHhhhhcc----------------cCCceEEEEcccH--
Q psy18032 60 PTPIQRKTIPLVLEGR----DVVAMARTGSGKTACFLIPMLEKLKTHAA----------------TSGVRALILSPTR-- 117 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~----d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----------------~~~~~~lil~Pt~-- 117 (333)
.+|+|...|..+.... -.++.||.|.|||..+..-+-..+...+. ...|-..++.|..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~ 83 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD 83 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC
Confidence 4789999999977642 48899999999996544332222222111 1245667787742
Q ss_pred --HHHHHHHHHHHHHh---ccCCceEEEEECCcchHH-----HHHHhhC---CCCEEEEC--chHHHHHHHh
Q psy18032 118 --ELALQTFKFVKELG---KFTKLQSTCLLGGDSMDN-----QFARLHA---SPDIVVAT--PGRFLHIVVE 174 (333)
Q Consensus 118 --~L~~q~~~~~~~~~---~~~~~~~~~~~g~~~~~~-----~~~~l~~---~~~IlI~T--P~rll~~l~~ 174 (333)
--+.|+.+..+.+. ...+.+++.+........ -.+.+.+ ++-++.+| |++++.-+..
T Consensus 84 ~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S 155 (328)
T PRK05707 84 KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS 155 (328)
T ss_pred CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh
Confidence 22334443333332 223567776654443222 2233333 34555555 4566554443
No 281
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=92.55 E-value=1 Score=47.89 Aligned_cols=77 Identities=23% Similarity=0.212 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
++++..++.....++. +++-|.+++..+..+ +=++++|+.|+|||...- ++...+.. .|.+++.++||-.=+.
T Consensus 366 ~v~~~~l~a~~~~~~~-Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~----~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 366 GVREAVLAATFARHAR-LSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA----AGYRVVGGALAGKAAE 439 (1102)
T ss_pred CCCHHHHHHHHhcCCC-CCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH----cCCeEEEEcCcHHHHH
Confidence 4556666665555555 899999999988653 449999999999995333 33333333 3778999999988776
Q ss_pred HHHH
Q psy18032 122 QTFK 125 (333)
Q Consensus 122 q~~~ 125 (333)
.+.+
T Consensus 440 ~L~e 443 (1102)
T PRK13826 440 GLEK 443 (1102)
T ss_pred HHHH
Confidence 6644
No 282
>KOG0347|consensus
Probab=92.51 E-value=0.095 Score=50.44 Aligned_cols=68 Identities=34% Similarity=0.501 Sum_probs=52.7
Q ss_pred EEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEecch
Q psy18032 160 IVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 239 (333)
Q Consensus 160 IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~~~~ 239 (333)
-||.||.|-+.+....+ ++.+......+...+.++-..-.+-+-+...|+|+++||||+..++.+.+.
T Consensus 266 ~LV~tPTRELa~QV~~H------------l~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~ 333 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQH------------LKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNT 333 (731)
T ss_pred eEEecChHHHHHHHHHH------------HHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhh
Confidence 78999999998887766 566666666666667777666667677778999999999999877766543
No 283
>PRK09183 transposase/IS protein; Provisional
Probab=92.42 E-value=0.52 Score=41.90 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=28.5
Q ss_pred HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
+-.|.++++.||+|+|||.....-... +.. .|..++++ +..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~-a~~----~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE-AVR----AGIKVRFT-TAADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH-HHH----cCCeEEEE-eHHHHHHHH
Confidence 455789999999999999544432222 222 25556555 445555443
No 284
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.20 E-value=0.66 Score=36.10 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=14.7
Q ss_pred CCcEEEECCCCcHHHH
Q psy18032 74 GRDVVAMARTGSGKTA 89 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~ 89 (333)
++.+++.||+|+|||.
T Consensus 19 ~~~v~i~G~~G~GKT~ 34 (151)
T cd00009 19 PKNLLLYGPPGTGKTT 34 (151)
T ss_pred CCeEEEECCCCCCHHH
Confidence 6789999999999995
No 285
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.12 E-value=1.7 Score=35.72 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=41.4
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc-c-cHHHHHHHHHHHHHHhccCCceEEEEECCcchHH----H
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS-P-TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN----Q 150 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~-P-t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~----~ 150 (333)
+++.|++|+|||....--+. .+.. .+.+++++. . .+.-.. +.+..++...++.+.......+..+ .
T Consensus 3 ~~~~G~~G~GKTt~~~~la~-~~~~----~g~~v~~i~~D~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL-YLKK----KGKKVLLVAADTYRPAAI---EQLRVLGEQVGVPVFEEGEGKDPVSIAKRA 74 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH----CCCcEEEEEcCCCChHHH---HHHHHhcccCCeEEEecCCCCCHHHHHHHH
Confidence 57889999999976443332 2222 244555544 3 332222 2343344445655443322222221 1
Q ss_pred HH-HhhCCC-CEEEECchHH
Q psy18032 151 FA-RLHASP-DIVVATPGRF 168 (333)
Q Consensus 151 ~~-~l~~~~-~IlI~TP~rl 168 (333)
.. ....+. -|+|=||+..
T Consensus 75 ~~~~~~~~~d~viiDt~g~~ 94 (173)
T cd03115 75 IEHAREENFDVVIVDTAGRL 94 (173)
T ss_pred HHHHHhCCCCEEEEECcccc
Confidence 11 223344 4778888875
No 286
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.09 E-value=0.19 Score=38.92 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=25.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
+..+++.||+|+|||.....-+ ..+.. .+..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~----~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGP----PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCC----CCCCEEEECCEEcc
Confidence 4679999999999997544322 22222 12246777766543
No 287
>KOG0390|consensus
Probab=91.95 E-value=2.2 Score=43.44 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=73.0
Q ss_pred CCCcHHHHhHHHHHhc---CC-------cEEEECCCCcHHHHHHHHHHHHHhhh-hcc--cCCceEEEEcccHHHHHHHH
Q psy18032 58 KIPTPIQRKTIPLVLE---GR-------DVVAMARTGSGKTACFLIPMLEKLKT-HAA--TSGVRALILSPTRELALQTF 124 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~---g~-------d~l~~a~TGsGKT~~~~l~~l~~l~~-~~~--~~~~~~lil~Pt~~L~~q~~ 124 (333)
..++|+|++.+..+.+ |. ..++.=..|+|||+-.. +.+..+.+ .+. +--.++|||+|.. |+.-.+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~I-sflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~nWk 314 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCI-SFIWTLLRQFPQAKPLINKPLVVAPSS-LVNNWK 314 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHH-HHHHHHHHhCcCccccccccEEEccHH-HHHHHH
Confidence 3479999999998876 32 25555568999997443 34444333 222 0114789999975 567777
Q ss_pred HHHHHHhccCCceEEEEECCcch--HHHHHHhhC-----CCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 125 KFVKELGKFTKLQSTCLLGGDSM--DNQFARLHA-----SPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~l~~-----~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
+.|.++...-.+....++|+.+. ......+.- ..-|++.+-+.+.+.... +....+.+||.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVc 382 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVC 382 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEE
Confidence 77777654345666677777663 111122211 234566666665544332 33455555553
No 288
>PTZ00424 helicase 45; Provisional
Probab=91.93 E-value=0.094 Score=49.57 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=27.4
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.+..-.+.||+|||.+|++|+++.++.
T Consensus 59 i~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~ 92 (401)
T PTZ00424 59 IKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY 92 (401)
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC
Confidence 4445555666778999999999999999998864
No 289
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=91.90 E-value=0.49 Score=47.59 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=39.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH--HHHHHHHHHHHHhc
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE--LALQTFKFVKELGK 132 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~--L~~q~~~~~~~~~~ 132 (333)
.++++.|+||+|||..+.+-+.+.+.. +..++++=|-.. |...+...++..+.
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i~~-----g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDIRR-----GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 579999999999998775555555544 556788878764 78888888877654
No 290
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=91.76 E-value=0.15 Score=53.02 Aligned_cols=44 Identities=30% Similarity=0.364 Sum_probs=36.7
Q ss_pred ccccchHHHhhhCCCCccccccccCCcccccccccEEEEccCCCchhhHHHhhhhhhccCCC
Q psy18032 269 MIHKQRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330 (333)
Q Consensus 269 ~lh~~r~~l~~f~~g~~~vLvaTd~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~ 330 (333)
.|+.|.++++..++| -+|+|+| =||||||.+|++|||+++=++.
T Consensus 71 lY~HQ~~A~~~~~~G-~~vvVtT-----------------gTgSGKTe~FllPIld~~l~~~ 114 (851)
T COG1205 71 LYSHQVDALRLIREG-RNVVVTT-----------------GTGSGKTESFLLPILDHLLRDP 114 (851)
T ss_pred ccHHHHHHHHHHHCC-CCEEEEC-----------------CCCCchhHHHHHHHHHHHhhCc
Confidence 667799999999999 4566666 3899999999999999986654
No 291
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.65 E-value=0.5 Score=43.79 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=40.5
Q ss_pred HHHHHhCCCCCCcHHHHhHHHHHh-cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 49 LKGVLKRGYKIPTPIQRKTIPLVL-EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 49 ~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
++.|.+.|+ +++.+.+.+..+. .+.+++++++||||||.. +-.++..+.. ..+.+++--+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~-----~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAP-----DERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCC-----CCcEEEECCcceec
Confidence 445556665 3566777666644 467999999999999953 3334443322 23566666666763
No 292
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.65 E-value=0.39 Score=41.88 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=34.7
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
-.|.-+++.+++|+|||...+--+...+.. +.++++++ +.+-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-----g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN-----GYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC-----CCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 447789999999999997543333332222 45678887 4444566666666543
No 293
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.59 E-value=0.66 Score=44.02 Aligned_cols=84 Identities=18% Similarity=0.149 Sum_probs=43.0
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
-++++||+|+|||....--+...... .+.++.++. +-|..+.+ .++.++...++...... ........
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~----~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~~~---~~~~l~~~ 294 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH----MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYPVK---DIKKFKET 294 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeeehH---HHHHHHHH
Confidence 37899999999996555333332222 133444444 33444444 34444445565443221 11222222
Q ss_pred hh-CCCC-EEEECchHHH
Q psy18032 154 LH-ASPD-IVVATPGRFL 169 (333)
Q Consensus 154 l~-~~~~-IlI~TP~rll 169 (333)
+. .+++ |+|=||++..
T Consensus 295 l~~~~~D~VLIDTaGr~~ 312 (432)
T PRK12724 295 LARDGSELILIDTAGYSH 312 (432)
T ss_pred HHhCCCCEEEEeCCCCCc
Confidence 22 3455 8888998763
No 294
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.54 E-value=0.19 Score=44.68 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=22.0
Q ss_pred HhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 65 RKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 65 ~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+++..+..|+++++.||+|+|||.++.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3445556678999999999999997554
No 295
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=0.26 Score=45.20 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=36.4
Q ss_pred ccccCCCcccccC-CCHHHHHHHH--hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 31 KKKKMGGGFQSFG-LGFEVLKGVL--KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 31 ~~~~~~~~f~~~~-l~~~l~~~l~--~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+.++.-+|++.| |.+++.+.-. ++...+|--++.--|. --+.||+-||+|+|||+.+=
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLAk 203 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLAK 203 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHHH
Confidence 3456677888886 6666554322 2344544444333221 13679999999999998554
No 296
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.42 E-value=0.43 Score=41.35 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=32.0
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.|..+++.+++|+|||....--+.+.+.. +..+++++. .+...++.+..+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-----g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD-----GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc-----CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 36789999999999996544333333322 445666664 44455655555544
No 297
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=91.41 E-value=1.7 Score=34.62 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=24.2
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
+++.||+|+|||.....-+..... .+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-----~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-----KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-----cCCEEEEEECCcchH
Confidence 578999999999744433332222 255677776654443
No 298
>KOG4439|consensus
Probab=91.39 E-value=0.97 Score=45.04 Aligned_cols=107 Identities=20% Similarity=0.179 Sum_probs=68.0
Q ss_pred CcHHHHhHHHHHhcC-----CcEEEECCCCcHHHHHHHHHHHHHhhhh-----cccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEG-----RDVVAMARTGSGKTACFLIPMLEKLKTH-----AATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g-----~d~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+-|+|..++.-++-. ...|+--.-|-|||++..--+++.-... .......+|||||-. |+.|.+..+..
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS-li~qW~~Ev~~ 404 (901)
T KOG4439|consen 326 LMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS-LIHQWEAEVAR 404 (901)
T ss_pred cchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH-HHHHHHHHHHH
Confidence 567888887666543 3477788899999986665555442221 111122599999964 67777777776
Q ss_pred HhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 130 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
-...-.++|...+|....+-..+.+. .++|+|+|-.-.
T Consensus 405 rl~~n~LsV~~~HG~n~r~i~~~~L~-~YDvViTTY~lv 442 (901)
T KOG4439|consen 405 RLEQNALSVYLYHGPNKREISAKELR-KYDVVITTYNLV 442 (901)
T ss_pred HHhhcceEEEEecCCccccCCHHHHh-hcceEEEeeecc
Confidence 55555677777777664332233333 589999986433
No 299
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.35 E-value=1.3 Score=42.68 Aligned_cols=84 Identities=26% Similarity=0.337 Sum_probs=47.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
|.-+++.+++|+|||...+--+. .+.. .+.+++|++- .+-..|+....++++... .-..+....+..+..+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~-~~a~----~g~~vlYvs~-Ees~~qi~~ra~rlg~~~--~~l~~~~e~~l~~i~~~ 151 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAA-RLAA----AGGKVLYVSG-EESASQIKLRAERLGLPS--DNLYLLAETNLEAILAT 151 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HHHh----cCCeEEEEEc-cccHHHHHHHHHHcCCCh--hcEEEeCCCCHHHHHHH
Confidence 45689999999999964333322 2222 2557888874 455667777777654321 11233444445444444
Q ss_pred hhC-CCCEEEECc
Q psy18032 154 LHA-SPDIVVATP 165 (333)
Q Consensus 154 l~~-~~~IlI~TP 165 (333)
+.+ +++++|.-+
T Consensus 152 i~~~~~~lVVIDS 164 (446)
T PRK11823 152 IEEEKPDLVVIDS 164 (446)
T ss_pred HHhhCCCEEEEec
Confidence 433 466665544
No 300
>KOG1002|consensus
Probab=91.17 E-value=1.8 Score=41.50 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=67.1
Q ss_pred CcHHHHhHHHHHhcCCc-----EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 60 PTPIQRKTIPLVLEGRD-----VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d-----~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+-|+|.+.+--+....+ -++.-.-|.|||.-..--++..+. +..+||++|+.+|+ |..+.+.++.. -
T Consensus 185 LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~------ra~tLVvaP~VAlm-QW~nEI~~~T~-g 256 (791)
T KOG1002|consen 185 LLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD------RAPTLVVAPTVALM-QWKNEIERHTS-G 256 (791)
T ss_pred chhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc------cCCeeEEccHHHHH-HHHHHHHHhcc-C
Confidence 56788887765555433 556667899999765544444322 33599999999975 55666666544 2
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 174 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~ 174 (333)
..++...+|.. .....+.+. +++++.+|-.-+....++
T Consensus 257 slkv~~YhG~~-R~~nikel~-~YDvVLTty~vvEs~yRk 294 (791)
T KOG1002|consen 257 SLKVYIYHGAK-RDKNIKELM-NYDVVLTTYAVVESVYRK 294 (791)
T ss_pred ceEEEEEeccc-ccCCHHHhh-cCcEEEEecHHHHHHHHh
Confidence 35555555544 333334443 589999998877766654
No 301
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.07 E-value=0.84 Score=43.71 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=54.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
..++||.+++++-+..+++.++. .++.+..++|+.+..++...+. + ..+|||+| +.+.. .+++.++
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~~~-GiDip~v 314 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVAAR-GIDIDDV 314 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----ccccc-CccCCCC
Confidence 46899999999999999998886 5788999999988766654443 3 48999999 44443 4677787
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 315 ~~VI 318 (434)
T PRK11192 315 SHVI 318 (434)
T ss_pred CEEE
Confidence 7776
No 302
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.04 E-value=0.41 Score=42.50 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=25.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.|.-+++.|++|+|||...+--+.+.+.. +.++++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-----Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR-----GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC-----CCcEEEEEe
Confidence 35669999999999996544333433322 557888774
No 303
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.96 E-value=1.2 Score=40.64 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=27.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
++++++.||+|+|||.... ++.+.+.. +|..+.++ ...+|+.++...
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~----~g~~v~~~-~~~~l~~~lk~~ 202 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAK----KGVSSTLL-HFPEFIRELKNS 202 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH----cCCCEEEE-EHHHHHHHHHHH
Confidence 4679999999999995443 33344433 24444444 334566555443
No 304
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=90.94 E-value=0.65 Score=46.43 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=42.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccH--HHHHHHHHHHHHHhcc
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTR--ELALQTFKFVKELGKF 133 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~--~L~~q~~~~~~~~~~~ 133 (333)
.++++.|+||+|||..+.+-+.+.+.. +..++++=|-. ++...++..++..++.
T Consensus 181 gHtlV~GtTGsGKT~l~~~li~q~i~~-----g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 181 GHTLVLGTTRVGKTRLAELLITQDIRR-----GDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 479999999999998877766666654 55788888876 6778888888887763
No 305
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.89 E-value=0.9 Score=50.05 Aligned_cols=62 Identities=27% Similarity=0.315 Sum_probs=46.0
Q ss_pred CCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHH--HHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACF--LIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~--~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
.+++-|.+++..++.. +-++++|..|+|||... ++.++..+.. ..+..++.++||-.=+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e---~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE---SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh---ccCceEEEEechHHHHHHH
Confidence 5899999999999976 45999999999999653 2333333222 2356788999998877665
No 306
>KOG0327|consensus
Probab=90.84 E-value=0.11 Score=47.71 Aligned_cols=124 Identities=21% Similarity=0.327 Sum_probs=84.4
Q ss_pred CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhh-cCCcEEEeCCCceEEEEE
Q psy18032 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 157 ~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~-~~~~i~~~t~~~i~~~~~ 235 (333)
.+++++-.|.|.+....... ...+...+....+.+..+++...+..++. ..++++++||||+.+.+.
T Consensus 94 e~qalilaPtreLa~qi~~v------------~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~ 161 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKV------------VRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLN 161 (397)
T ss_pred HHHHHHhcchHHHHHHHHHH------------HHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhc
Confidence 36788888888776665543 56677777777887777777776655554 568999999999988886
Q ss_pred ecchhhhhHH---------HHhhcchhhHHHHHHHhc-CCCcccccc----chHHH-hhhCCCCcccccccc
Q psy18032 236 EMELKLSSIQ---------LSLTDFKQDTSRIALDLV-GDSTEMIHK----QRQSV-RKWDPAKKKYVQVTD 292 (333)
Q Consensus 236 ~~~~k~~~l~---------lif~~~~~~~~~l~~~L~-g~~~~~lh~----~r~~l-~~f~~g~~~vLvaTd 292 (333)
........+. .+-+++++..+.+++.+. ...+.++.+ .-..+ ++|....+++++-.|
T Consensus 162 ~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~ 233 (397)
T KOG0327|consen 162 RGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKD 233 (397)
T ss_pred cccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecch
Confidence 5443333332 344567777888887775 344444443 33334 788888888888776
No 307
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=90.79 E-value=0.35 Score=47.57 Aligned_cols=69 Identities=33% Similarity=0.577 Sum_probs=49.2
Q ss_pred CCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEE
Q psy18032 156 ASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 156 ~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~ 235 (333)
.++.+||.+|.+-+....... ...+.+..+.....++++..+..+...+..+++++++||+++.+++.
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~------------~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~ 262 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQ------------AKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLS 262 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHH------------HHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 357899999998775443222 33444445556667778888888888888889999999998755544
Q ss_pred e
Q psy18032 236 E 236 (333)
Q Consensus 236 ~ 236 (333)
.
T Consensus 263 ~ 263 (518)
T PLN00206 263 K 263 (518)
T ss_pred c
Confidence 3
No 308
>KOG0332|consensus
Probab=90.74 E-value=0.1 Score=47.80 Aligned_cols=40 Identities=30% Similarity=0.568 Sum_probs=32.2
Q ss_pred Ccccccc--cccEEEEccCCCchhhHHHhhhhhhccCCCCCC
Q psy18032 294 TIPLVLE--GRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333 (333)
Q Consensus 294 ~i~~vi~--~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~~ 333 (333)
.+|+.+. ..++......|+|||.||+|.+|.|+|.+..+|
T Consensus 120 aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~P 161 (477)
T KOG0332|consen 120 ALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVP 161 (477)
T ss_pred hcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCC
Confidence 4566654 445667778899999999999999999988766
No 309
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.60 E-value=0.35 Score=41.81 Aligned_cols=54 Identities=30% Similarity=0.364 Sum_probs=33.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.|..+++.|++|+|||...+--+.+.+... +-.+++++ +.+-..++.+.++.++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~----ge~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF----GEKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH----T--EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc----CCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 356799999999999965443344443330 33577766 4555677777777653
No 310
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.58 E-value=0.25 Score=43.54 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=25.1
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHH
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD-VVAMARTGSGKTAC 90 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~ 90 (333)
..++|++++|++-+.+. .++.+. ++++++|||||+..
T Consensus 106 ~IPt~eeL~LPevlk~l-------------------a~~kRGLviiVGaTGSGKSTt 143 (375)
T COG5008 106 KIPTFEELKLPEVLKDL-------------------ALAKRGLVIIVGATGSGKSTT 143 (375)
T ss_pred cCCcHHhcCCcHHHHHh-------------------hcccCceEEEECCCCCCchhh
Confidence 34678888877755432 122233 89999999999964
No 311
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.57 E-value=0.45 Score=43.43 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.2
Q ss_pred HhcCCcEEEECCCCcHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~ 90 (333)
+..|.+++++||||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 45688999999999999963
No 312
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=90.52 E-value=0.33 Score=45.81 Aligned_cols=52 Identities=31% Similarity=0.569 Sum_probs=33.6
Q ss_pred HHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 69 PLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 69 ~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
|.-...+++++.|.||||||. ++-.++..+.. .+-++||.=|.-+.....++
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~----~g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQ-AIRHLLDQIRA----RGDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHH----TT-EEEEEEETTHHHHHH--
T ss_pred ccchhhCcEEEECCCCCCHHH-HHHHHHHHHHH----cCCEEEEEECCchHHHHhcC
Confidence 344556899999999999996 55566666655 25578888888777554443
No 313
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=90.47 E-value=0.3 Score=49.07 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=37.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.++++.||||||||..+++|-+-. . +.-++++=|..|+........++
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~--~-----~gS~VV~DpKgEl~~~Ta~~R~~ 272 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALK--W-----GGPLVVLDPSTEVAPMVSEHRRD 272 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhc--C-----CCCEEEEeCcHHHHHHHHHHHHH
Confidence 579999999999999999997643 2 23588888999988777665554
No 314
>KOG0336|consensus
Probab=90.44 E-value=0.29 Score=45.58 Aligned_cols=69 Identities=32% Similarity=0.588 Sum_probs=50.3
Q ss_pred CCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEE
Q psy18032 156 ASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 156 ~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~ 235 (333)
.++.+|+-||.+-+.+.....+ . .-.+-.....++++++.-.++++.+.++.+++++||+|+.++..
T Consensus 293 ~~p~~lvl~ptreLalqie~e~------------~-kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~ 359 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEV------------K-KYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQM 359 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHH------------h-HhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhh
Confidence 3577888888777766655431 1 11223456788999999999999999999999999998766554
Q ss_pred ec
Q psy18032 236 EM 237 (333)
Q Consensus 236 ~~ 237 (333)
..
T Consensus 360 ~n 361 (629)
T KOG0336|consen 360 DN 361 (629)
T ss_pred cC
Confidence 43
No 315
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.42 E-value=0.48 Score=42.02 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=36.2
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.|+.+++.|++|||||.-.. -.+..... .|-.+++ +.+.+...++.+.+..++..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~-qfl~~~~~----~ge~vly-vs~~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFAL-QFLYEGAR----EGEPVLY-VSTEESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHH-HHHHHHHh----cCCcEEE-EEecCCHHHHHHHHHHcCCC
Confidence 46789999999999996433 33333222 1334554 45677788888888876543
No 316
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=90.36 E-value=0.19 Score=50.55 Aligned_cols=48 Identities=25% Similarity=0.223 Sum_probs=35.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.++++.||||||||..+++|-+-... .-+||.=|--|+........++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~-------~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWP-------GSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCC-------CCEEEEeCcchHHHHHHHHHHh
Confidence 57999999999999999999876532 2467777777776655554433
No 317
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.32 E-value=1.1 Score=50.04 Aligned_cols=65 Identities=26% Similarity=0.287 Sum_probs=45.8
Q ss_pred CCcHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
.+++.|.+++..++.+.| ++++|..|+|||...- .++..+..-....+..++.++||-.=+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 589999999999998754 9999999999995432 2222222111123567888999997766543
No 318
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=90.25 E-value=0.26 Score=46.92 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=34.2
Q ss_pred HHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 68 IPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 68 i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
+|.-...+++++.|+||||||.+ +..++..+.. .+..++|+=|..++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~----~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA----RGDRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh----cCCCEEEEeCCcchhHh
Confidence 44445567999999999999975 4444444443 24568888888776544
No 319
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=90.25 E-value=0.36 Score=48.31 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=38.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.++++.||||||||..+++|-+-.. +.-++++=|.-|+.......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 5799999999999999999965432 235888888888877776655443
No 320
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.22 E-value=0.48 Score=40.22 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=23.7
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
++++||||||||... ..++..+.. ..+.+++.+--..|+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~---~~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINK---NKTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhh---cCCcEEEEEcCCccc
Confidence 689999999999653 344555443 123355555544444
No 321
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=90.20 E-value=0.98 Score=51.33 Aligned_cols=62 Identities=26% Similarity=0.358 Sum_probs=46.1
Q ss_pred CCcHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHH---HHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD--VVAMARTGSGKTACFL---IPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~---l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
.+++.|.+++..++.+.| ++++|+.|+|||.... -++...+.. .+..++.++||-.=+.++.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~----~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES----EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh----cCCeEEEEeChHHHHHHHH
Confidence 589999999999998755 7889999999996441 222333222 3678999999988776654
No 322
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=90.05 E-value=0.24 Score=49.86 Aligned_cols=46 Identities=28% Similarity=0.307 Sum_probs=36.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
+++++.||||||||..+++|.+-.. +..+||+=|--|+........
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999987642 336899999999876655543
No 323
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.94 E-value=0.54 Score=45.79 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=41.4
Q ss_pred hHHHHHhcC-----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 66 KTIPLVLEG-----RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 66 ~~i~~i~~g-----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
..+..++.| .-+++.+|+|+|||...+--+.+.+.. +-+++|++ ..|-..|+.+.++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-----ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-----KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 345555543 569999999999997544433333322 55787766 7788889988888864
No 324
>KOG0741|consensus
Probab=89.89 E-value=0.39 Score=46.38 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=36.1
Q ss_pred CCCcccccCCCcccccC---CCHHHHHHHHhCCCCCCcHHHHhHHHH-Hhc------CCcEEEECCCCcHHHHHH
Q psy18032 27 NTGDKKKKMGGGFQSFG---LGFEVLKGVLKRGYKIPTPIQRKTIPL-VLE------GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 27 ~~~~~~~~~~~~f~~~~---l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~------g~d~l~~a~TGsGKT~~~ 91 (333)
...+.-..+.-.|++|| |+.+.-+.++.. +-++++|. +.+ =+.+++-+|+|+|||+.+
T Consensus 206 ~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRA-------FAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 206 PASNSIINPDFNFESMGIGGLDKEFSDIFRRA-------FASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred chhccccCCCCChhhcccccchHHHHHHHHHH-------HHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHH
Confidence 33444456667899996 677766655432 12222222 222 267999999999999855
No 325
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.88 E-value=0.29 Score=33.10 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.0
Q ss_pred cCCcEEEECCCCcHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~ 90 (333)
.|..+++.+|+|||||..
T Consensus 22 ~g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL 39 (62)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345799999999999963
No 326
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.87 E-value=1.3 Score=42.99 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=54.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+..+||.++|+.-+.++++.++. .++.+..++|+.+..++...+. ...+|||+| +.+.. .+++.++
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~----~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT-----~~~~~-GID~p~V 295 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQN----LGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVAT-----VAFGM-GINKPDV 295 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHh----cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEe-----chhhc-cCCcccc
Confidence 55679999999999999998886 4788999999988766554432 358999999 43433 4677788
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 296 ~~VI~ 300 (470)
T TIGR00614 296 RFVIH 300 (470)
T ss_pred eEEEE
Confidence 87774
No 327
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=89.76 E-value=0.63 Score=44.09 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=33.5
Q ss_pred cCCCHHHHHHHHhCCCCC--CcH-HHH----hHHHHHhcCCcEEEECCCCcHHHHHHHH
Q psy18032 42 FGLGFEVLKGVLKRGYKI--PTP-IQR----KTIPLVLEGRDVVAMARTGSGKTACFLI 93 (333)
Q Consensus 42 ~~l~~~l~~~l~~~g~~~--~~~-~Q~----~~i~~i~~g~d~l~~a~TGsGKT~~~~l 93 (333)
+...+|+-=.+...||+. ++. .+. ++++.+-.+.|++..||+|+|||-.|.-
T Consensus 170 FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 170 FTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred cCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 344556655667788872 222 111 1225566788999999999999966653
No 328
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.70 E-value=0.85 Score=39.24 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=16.4
Q ss_pred CCcEEEECCCCcHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLI 93 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l 93 (333)
+.++++.||+|+|||.....
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999965543
No 329
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=89.62 E-value=0.36 Score=43.00 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 46 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
+++.++|...|.....+.-.+.+--+..|.-+++.|++|+|||....--+.+.+.. .+..+++++- .+-..++.+
T Consensus 2 ~~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----~g~~vl~iS~-E~~~~~~~~ 76 (271)
T cd01122 2 EEIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ----HGVRVGTISL-EEPVVRTAR 76 (271)
T ss_pred chhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----cCceEEEEEc-ccCHHHHHH
Confidence 45566666444443333322333345667789999999999996444333332222 2456777753 334555555
Q ss_pred HHHH
Q psy18032 126 FVKE 129 (333)
Q Consensus 126 ~~~~ 129 (333)
.+..
T Consensus 77 r~~~ 80 (271)
T cd01122 77 RLLG 80 (271)
T ss_pred HHHH
Confidence 5544
No 330
>KOG0738|consensus
Probab=89.54 E-value=0.87 Score=42.39 Aligned_cols=57 Identities=19% Similarity=0.391 Sum_probs=36.9
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCC-CCc----H----------HHHh-----HHHHHhcC-----CcEEEECCCCcHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYK-IPT----P----------IQRK-----TIPLVLEG-----RDVVAMARTGSGKT 88 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~-~~~----~----------~Q~~-----~i~~i~~g-----~d~l~~a~TGsGKT 88 (333)
.....|+.++....|.++|+.-=.. .|. . .+.. .+|.+.+| +.++..+|+|+|||
T Consensus 180 ~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 180 GEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred cccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHH
Confidence 3456899999998999888753111 111 0 1111 23445555 68999999999999
Q ss_pred HH
Q psy18032 89 AC 90 (333)
Q Consensus 89 ~~ 90 (333)
+.
T Consensus 260 lL 261 (491)
T KOG0738|consen 260 LL 261 (491)
T ss_pred HH
Confidence 63
No 331
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.52 E-value=0.24 Score=44.37 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=19.8
Q ss_pred hHHHH-HhcCCcEEEECCCCcHHHHHHH
Q psy18032 66 KTIPL-VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 66 ~~i~~-i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.. +..++.++++||+|+|||....
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHHHH
Confidence 33444 4457889999999999997443
No 332
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=89.45 E-value=0.27 Score=46.60 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=37.3
Q ss_pred cccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
...+.-+|++++--+...+.+++. .+..|..++..- +...+.+++.||+|+|||...
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 346677899998777666666552 334333333222 223578999999999999754
No 333
>PHA02533 17 large terminase protein; Provisional
Probab=89.44 E-value=2 Score=42.33 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=53.9
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|.|+|...+..+..++-.++..+-..|||.+...-++...... .+..+++++|+..-|..+++.++.+.
T Consensus 60 L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 60 MRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---KDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 7889999998876666678999999999987765444433321 25699999999999999999888643
No 334
>PRK10689 transcription-repair coupling factor; Provisional
Probab=89.28 E-value=1.3 Score=47.60 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=55.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.+++|++|+++-+...++.+++.. .+.++..++|+.+..+..+.+. ...+|||+| +.+..+ +++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~--p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIierG-IDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIETG-IDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chhhcc-cccccC
Confidence 5689999999999999998888753 4678889999988766544433 259999999 555544 678888
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 881 ~~VI 884 (1147)
T PRK10689 881 NTII 884 (1147)
T ss_pred CEEE
Confidence 8887
No 335
>PRK04296 thymidine kinase; Provisional
Probab=89.27 E-value=0.75 Score=38.77 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=24.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.=.++.||+|+|||...+ -.+.++.. .+.+++++.|
T Consensus 3 ~i~litG~~GsGKTT~~l-~~~~~~~~----~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELL-QRAYNYEE----RGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHH-HHHHHHHH----cCCeEEEEec
Confidence 346889999999996444 33444333 2567888876
No 336
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.14 E-value=0.79 Score=39.59 Aligned_cols=52 Identities=29% Similarity=0.435 Sum_probs=33.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|.-+++.|++|+|||...+--+...+.. +..+++++- .+-..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~-----g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN-----GEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 5679999999999986433333333332 446777655 445777777777653
No 337
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=88.99 E-value=5.9 Score=35.82 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=74.5
Q ss_pred cccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhc----------CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCce
Q psy18032 40 QSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE----------GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVR 109 (333)
Q Consensus 40 ~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 109 (333)
-.+.|+++++. . ..++..|.+++-.... ....++==.||.||--...--++..+... ..+
T Consensus 24 y~~~lp~~~~~----~--g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G----r~r 93 (303)
T PF13872_consen 24 YRLHLPEEVID----S--GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG----RKR 93 (303)
T ss_pred cccCCCHHHHh----c--ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC----CCc
Confidence 44567775543 2 2368899998877763 23466666699988754444456665551 347
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHH
Q psy18032 110 ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 173 (333)
Q Consensus 110 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~ 173 (333)
+|+++.+-.|-.+..+.++.++.. .+.+..+.. .+..+. ..+ .-.||++|-..|...-.
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~~~-~~~--~~GvlF~TYs~L~~~~~ 152 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYGDI-IRL--KEGVLFSTYSTLISESQ 152 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccCcC-CCC--CCCccchhHHHHHhHHh
Confidence 999999999999999999987653 444333322 111110 112 34589999877765543
No 338
>PRK05642 DNA replication initiation factor; Validated
Probab=88.94 E-value=1.6 Score=38.15 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=27.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
..++++||+|+|||-. +-++.+.+.. ++.+++++. ..++....
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~~----~~~~v~y~~-~~~~~~~~ 88 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFEQ----RGEPAVYLP-LAELLDRG 88 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHh----CCCcEEEee-HHHHHhhh
Confidence 4589999999999964 2333444433 245666655 46666544
No 339
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=88.72 E-value=0.64 Score=39.60 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=26.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
|.=+.+.||+|+|||...+-.+.+.... +..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~-----g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ-----GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEECC
Confidence 4568999999999997665444443322 5577877764
No 340
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=88.64 E-value=1.4 Score=46.28 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=55.8
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
++.+++|++|+.+-+..+++.++++. .+.++..++|+.+..+..+.+. + ..+|||+| +.+..+ +++.+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT-----~iie~G-IDIp~ 730 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT-----TIIETG-IDIPN 730 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhcc-ccccc
Confidence 36799999999999999988888753 4788999999988766554443 2 58999999 555544 67777
Q ss_pred chhhH
Q psy18032 182 IQYTF 186 (333)
Q Consensus 182 l~~lV 186 (333)
+.++|
T Consensus 731 v~~VI 735 (926)
T TIGR00580 731 ANTII 735 (926)
T ss_pred CCEEE
Confidence 77666
No 341
>PHA02244 ATPase-like protein
Probab=88.53 E-value=0.62 Score=43.41 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=19.9
Q ss_pred hHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+...+..+.++++.||||+|||...
T Consensus 111 ri~r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 111 DIAKIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 33344556889999999999999644
No 342
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.26 E-value=3.8 Score=38.48 Aligned_cols=84 Identities=23% Similarity=0.320 Sum_probs=46.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
|.=+++.|++|+|||...+-- +..+.. .+.+++|++-. +-..|+....++++.. ..-..+......++..+.
T Consensus 82 GslvLI~G~pG~GKStLllq~-a~~~a~----~g~~VlYvs~E-Es~~qi~~Ra~rlg~~--~~~l~l~~e~~le~I~~~ 153 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQV-AARLAK----RGGKVLYVSGE-ESPEQIKLRADRLGIS--TENLYLLAETNLEDILAS 153 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHH-HHHHHh----cCCeEEEEECC-cCHHHHHHHHHHcCCC--cccEEEEccCcHHHHHHH
Confidence 456999999999999644433 333322 24578888754 4456666666665321 122233344444444343
Q ss_pred hhC-CCCEEEECc
Q psy18032 154 LHA-SPDIVVATP 165 (333)
Q Consensus 154 l~~-~~~IlI~TP 165 (333)
+.. +++++|.-+
T Consensus 154 i~~~~~~lVVIDS 166 (372)
T cd01121 154 IEELKPDLVIIDS 166 (372)
T ss_pred HHhcCCcEEEEcc
Confidence 332 566666554
No 343
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=88.15 E-value=1 Score=41.67 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=47.0
Q ss_pred CCCCCCcHHHHhHHHHHhcCC-c-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGR-D-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~-d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
.|+..-+..|.-|+..++... + |.+.++-|||||+.++-+.+......+ .-.+.|+--|+..+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--RYRKIIVTRPTVPVGE 290 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--hhceEEEecCCcCccc
Confidence 477755667777787777643 2 888999999999999888888776632 2335777777777643
No 344
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=88.08 E-value=0.32 Score=50.30 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=28.7
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhcc
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~ 327 (333)
.+|.++.+..+....+||+|||++|+||+++++.
T Consensus 100 ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL 133 (970)
T PRK12899 100 ILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL 133 (970)
T ss_pred HhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh
Confidence 4566666778889999999999999999998764
No 345
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=88.04 E-value=0.88 Score=35.25 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=14.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPML 96 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l 96 (333)
++-+++.||+|+|||.+...-+-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999975544333
No 346
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=87.99 E-value=0.28 Score=50.16 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=32.8
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
..+|.+.++.++.-++-||+|||.|.+||+|.++-+.
T Consensus 29 ~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~ 65 (814)
T COG1201 29 YAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSL 65 (814)
T ss_pred HHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhc
Confidence 4678888999999999999999999999999988653
No 347
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.87 E-value=2.6 Score=40.70 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=46.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
|.-+++.|++|+|||...+-- +..+.. .+.+++|++.- +-..|+.....+++- ...-..+....+.......
T Consensus 94 GsvilI~G~pGsGKTTL~lq~-a~~~a~----~g~kvlYvs~E-Es~~qi~~ra~rlg~--~~~~l~~~~e~~~~~I~~~ 165 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQV-ACQLAK----NQMKVLYVSGE-ESLQQIKMRAIRLGL--PEPNLYVLSETNWEQICAN 165 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHH-HHHHHh----cCCcEEEEECc-CCHHHHHHHHHHcCC--ChHHeEEcCCCCHHHHHHH
Confidence 456999999999999654433 333332 24468888754 556677766666532 1222223334444443333
Q ss_pred hhC-CCCEEEECc
Q psy18032 154 LHA-SPDIVVATP 165 (333)
Q Consensus 154 l~~-~~~IlI~TP 165 (333)
+.+ +++++|.-+
T Consensus 166 i~~~~~~~vVIDS 178 (454)
T TIGR00416 166 IEEENPQACVIDS 178 (454)
T ss_pred HHhcCCcEEEEec
Confidence 333 566665544
No 348
>PRK08727 hypothetical protein; Validated
Probab=87.85 E-value=1.5 Score=38.16 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=29.5
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.+++.||+|+|||-... ++...+.. .+.+++++ |..++.....+.++.+
T Consensus 43 ~l~l~G~~G~GKThL~~-a~~~~~~~----~~~~~~y~-~~~~~~~~~~~~~~~l 91 (233)
T PRK08727 43 WLYLSGPAGTGKTHLAL-ALCAAAEQ----AGRSSAYL-PLQAAAGRLRDALEAL 91 (233)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH----cCCcEEEE-eHHHhhhhHHHHHHHH
Confidence 49999999999995443 23333333 24566665 4555555555555443
No 349
>PTZ00035 Rad51 protein; Provisional
Probab=87.80 E-value=1.9 Score=39.90 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=22.1
Q ss_pred EEEECCCCcHHHHHHHHHHHHHh-hhhcccCCceEEEEcc
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKL-KTHAATSGVRALILSP 115 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l-~~~~~~~~~~~lil~P 115 (333)
+.+.|++|+|||......+.... -......+..++++.-
T Consensus 121 teI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdt 160 (337)
T PTZ00035 121 TELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDT 160 (337)
T ss_pred EEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEc
Confidence 77999999999954433322221 1111112457777764
No 350
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=87.60 E-value=1.4 Score=44.28 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=55.7
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
.+..+||.++|+.-+.++++.++. .++.+..++|+.+..++.+.+. ...+|||+| +.+. ..+++.+
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~----~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT-----~a~~-~GIDip~ 304 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQS----RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVAT-----VAFG-MGINKPN 304 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEe-----chhh-ccCCCCC
Confidence 356799999999999999998887 4788999999988766544432 248999999 4443 3578888
Q ss_pred chhhHH
Q psy18032 182 IQYTFK 187 (333)
Q Consensus 182 l~~lV~ 187 (333)
++++|.
T Consensus 305 V~~VI~ 310 (607)
T PRK11057 305 VRFVVH 310 (607)
T ss_pred cCEEEE
Confidence 888875
No 351
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.60 E-value=1 Score=43.92 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=38.1
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
.|.-+++.+++|+|||...+--+.+.+.. .+-.+++++- .|-..++.+.+..++-
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~----~ge~~lyvs~-eE~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH----FDEPGVFVTF-EESPQDIIKNARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEEEE-ecCHHHHHHHHHHcCC
Confidence 35779999999999997655444444332 1346777774 4777888888887653
No 352
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=87.55 E-value=5 Score=36.88 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=58.3
Q ss_pred cHHHHhHHHHHh----cCC---cEEEECCCCcHHHHHHHHHHHHHhhhhcc----------------cCCceEEEEccc-
Q psy18032 61 TPIQRKTIPLVL----EGR---DVVAMARTGSGKTACFLIPMLEKLKTHAA----------------TSGVRALILSPT- 116 (333)
Q Consensus 61 ~~~Q~~~i~~i~----~g~---d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----------------~~~~~~lil~Pt- 116 (333)
+|+|+..+..+. +|+ -.++.||.|.||+..+..-+-..+...+. ...|-..++.|.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 567777666655 343 47899999999996554333332222111 124556667773
Q ss_pred -HH-HHHHHHHHHHHH---hccCCceEEEEECCcchHHH-----HHHhhC---CCCEEEEC--chHHHHHHHh
Q psy18032 117 -RE-LALQTFKFVKEL---GKFTKLQSTCLLGGDSMDNQ-----FARLHA---SPDIVVAT--PGRFLHIVVE 174 (333)
Q Consensus 117 -~~-L~~q~~~~~~~~---~~~~~~~~~~~~g~~~~~~~-----~~~l~~---~~~IlI~T--P~rll~~l~~ 174 (333)
.. -+.|+.+..+.+ ....+.+++.+......... .+.+.+ +.-++.+| |++++.-+..
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 11 233333322222 22235677777765543322 223333 23344444 5677765554
No 353
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=87.50 E-value=2.5 Score=34.90 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=30.5
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+++.|++|||||.-+.--+.. .+.++++++....+-.+..+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~--------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE--------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh--------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 588999999999644422221 244788998888776666655554
No 354
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=87.44 E-value=0.77 Score=40.19 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=18.6
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
.+++.|++|||||. +++.++..+..
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhcc
Confidence 68999999999995 55555554433
No 355
>KOG0350|consensus
Probab=87.41 E-value=0.25 Score=47.10 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=26.7
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
|...-+.++.-.+-||||||++|++||+|-+-.
T Consensus 178 p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~ 210 (620)
T KOG0350|consen 178 PPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS 210 (620)
T ss_pred CCCCCCCceEEecCCCCCceeeehhHHHHHHcc
Confidence 444445688888999999999999999987643
No 356
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=87.27 E-value=0.74 Score=44.03 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=27.4
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
|-......+..+..++++++.||+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 555667778888889999999999999996554
No 357
>KOG4284|consensus
Probab=87.09 E-value=0.33 Score=47.85 Aligned_cols=75 Identities=25% Similarity=0.477 Sum_probs=48.3
Q ss_pred CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhh-ccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEE
Q psy18032 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGK-FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 157 ~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~-~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~ 235 (333)
.++++|.||.|-+....+.. +..+.. +-+.++.+..++.........+. ..+|+++||||+.|++.
T Consensus 93 ~~q~~Iv~PTREiaVQI~~t------------v~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~e 159 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKET------------VRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVE 159 (980)
T ss_pred cceeEEEecchhhhhHHHHH------------HHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHH
Confidence 58999999999888776554 333332 23356666666655555555543 45799999999887775
Q ss_pred ecchhhhhH
Q psy18032 236 EMELKLSSI 244 (333)
Q Consensus 236 ~~~~k~~~l 244 (333)
......+++
T Consensus 160 l~~~n~s~v 168 (980)
T KOG4284|consen 160 LGAMNMSHV 168 (980)
T ss_pred hcCCCccce
Confidence 443333333
No 358
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=86.96 E-value=1.5 Score=38.13 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|.-+++.|++|+|||....--+...+.. +.+++++.-. +-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~-----g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ-----GKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC-----CCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 4569999999999996444333333332 5567777654 44566777676653
No 359
>KOG0060|consensus
Probab=86.94 E-value=0.23 Score=48.29 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=17.3
Q ss_pred HhcCCcEEEECCCCcHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~ 89 (333)
+.+|++++++||+|+|||.
T Consensus 458 V~~g~~LLItG~sG~GKtS 476 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTS 476 (659)
T ss_pred ecCCCeEEEECCCCCchhH
Confidence 6679999999999999994
No 360
>KOG1533|consensus
Probab=86.83 E-value=0.52 Score=40.79 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=18.4
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
.+++||+||||| .|...+.+.+..
T Consensus 5 qvVIGPPgSGKs-TYc~g~~~fls~ 28 (290)
T KOG1533|consen 5 QVVIGPPGSGKS-TYCNGMSQFLSA 28 (290)
T ss_pred eEEEcCCCCCcc-chhhhHHHHHHH
Confidence 578999999999 477666666554
No 361
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=86.59 E-value=4.7 Score=37.39 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=25.4
Q ss_pred cHHHHhHHHHHhcC--C---cEEEECCCCcHHHHHHHHH
Q psy18032 61 TPIQRKTIPLVLEG--R---DVVAMARTGSGKTACFLIP 94 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g--~---d~l~~a~TGsGKT~~~~l~ 94 (333)
+|+|...+..+..- + -.++.||.|.||+..+..-
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~ 41 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHL 41 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHH
Confidence 67888888876653 2 4889999999999655433
No 362
>KOG1131|consensus
Probab=86.57 E-value=3.4 Score=40.03 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=47.7
Q ss_pred CCCCCCcHHHHhHHHHHhc----CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRKTIPLVLE----GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
+.|..-+|-|-+-...+.. +-+.++.+|+|+|||.+.+--++..-...+ ....+.++-+-|..=+......++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p-~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP-DEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC-cccceEEEecCcchHHHHHHHHHHHH
Confidence 3566677888766555444 346999999999999876654444433322 23456777776665555555555554
No 363
>KOG1806|consensus
Probab=86.52 E-value=1.1 Score=46.47 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=54.4
Q ss_pred CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
++-.+||-|.++|..-..-.++.+.+|+|+|||-..+= ++..+..+ ...++++|++.+..-.+|.++.+.+.
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn--~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHN--SPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhc--CCCcceEEEEecccchhHHHHHHHhc
Confidence 34457899999988877778999999999999965442 33333332 23568999999999999998888763
No 364
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=86.51 E-value=0.49 Score=43.48 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=20.3
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
+.|+-+|+.+|+|||||+.+ +.+...+-
T Consensus 63 ~aGrgiLi~GppgTGKTAlA-~gIa~eLG 90 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALA-MGIARELG 90 (450)
T ss_pred ccccEEEEECCCCCcHHHHH-HHHHHHhC
Confidence 45788999999999999644 34444443
No 365
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.48 E-value=0.4 Score=37.87 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.5
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
++++.||+|+|||..+
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5899999999999543
No 366
>KOG2340|consensus
Probab=86.44 E-value=3.6 Score=39.89 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=57.6
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCC-CcHH--HHHHHHHHHHHhhhhcc--------------------------cCCc
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMART-GSGK--TACFLIPMLEKLKTHAA--------------------------TSGV 108 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~T-GsGK--T~~~~l~~l~~l~~~~~--------------------------~~~~ 108 (333)
..+|+.|.+.+..+.+.+|++..-.| +.|+ +-.|++-+++++.+... -..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 45799999999999999997654332 3444 56799999998755210 1158
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 109 RALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
++||++|+|+-|-.+.+.+..+..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~ 318 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLS 318 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhc
Confidence 999999999999999999998743
No 367
>KOG0389|consensus
Probab=86.39 E-value=3.7 Score=41.65 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=65.0
Q ss_pred CCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 56 GYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|+. +-++|.-.+.-+. .+-+.|+.-.-|-||| |-+++.+..+.... ..| .-|||||+-.|-+ +++++.
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKT-iQvIaFlayLkq~g-~~g-pHLVVvPsSTleN----WlrEf~ 468 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKT-IQVIAFLAYLKQIG-NPG-PHLVVVPSSTLEN----WLREFA 468 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcch-hHHHHHHHHHHHcC-CCC-CcEEEecchhHHH----HHHHHH
Confidence 454 6778877665432 2457788888999999 34444444444322 234 5899999988754 344443
Q ss_pred c-cCCceEEEEECCcchHHHHHHhh-C---CCCEEEECch
Q psy18032 132 K-FTKLQSTCLLGGDSMDNQFARLH-A---SPDIVVATPG 166 (333)
Q Consensus 132 ~-~~~~~~~~~~g~~~~~~~~~~l~-~---~~~IlI~TP~ 166 (333)
+ ++.+++...+|......+.+... . ..+||++|-.
T Consensus 469 kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~ 508 (941)
T KOG0389|consen 469 KWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYN 508 (941)
T ss_pred HhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEee
Confidence 3 35788888888876555444332 2 4899998854
No 368
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=86.24 E-value=1.1 Score=42.63 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.3
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.++++.||||+|||..+-
T Consensus 117 ~~iLL~GP~GsGKT~lAr 134 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQ 134 (413)
T ss_pred ceEEEECCCCcCHHHHHH
Confidence 469999999999997554
No 369
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=86.23 E-value=0.52 Score=39.37 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=14.9
Q ss_pred CCcEEEECCCCcHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIP 94 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~ 94 (333)
...++++||.|||||..|..-
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L 23 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQL 23 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 457999999999999766543
No 370
>PHA02535 P terminase ATPase subunit; Provisional
Probab=86.22 E-value=5.3 Score=39.51 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
.++++-.+.|.+.-.+.+.++|...+..-...+.-++.-.--+|||..|..-++..... .|...++|+|+++.+.+
T Consensus 122 ~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~----~G~nqiflSas~~QA~~ 197 (581)
T PHA02535 122 DISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALL----TGRNQIFLSASKAQAHV 197 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHh----cCCceEEECCCHHHHHH
Confidence 36666666777665678999999998763334556666667789999888777765554 25578999999999999
Q ss_pred HHHHHHHHhc
Q psy18032 123 TFKFVKELGK 132 (333)
Q Consensus 123 ~~~~~~~~~~ 132 (333)
..+.+..+++
T Consensus 198 f~~yi~~~a~ 207 (581)
T PHA02535 198 FKQYIIAFAR 207 (581)
T ss_pred HHHHHHHHHH
Confidence 8887777754
No 371
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=86.20 E-value=3.6 Score=41.86 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHhCCCCCCcHHHHhHHHHHhcCC--cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 51 GVLKRGYKIPTPIQRKTIPLVLEGR--DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 51 ~l~~~g~~~~~~~Q~~~i~~i~~g~--d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
.+.+.....+..-|.+.+..++... -+++.|.-|=|||.+.-+.+....... . ..+++|.+|+.+-++.+++.+.
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~--~-~~~iiVTAP~~~nv~~Lf~fa~ 282 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA--G-SVRIIVTAPTPANVQTLFEFAG 282 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc--C-CceEEEeCCCHHHHHHHHHHHH
Confidence 3555555556666666777777754 489999999999999988874443331 1 4589999999999998888777
Q ss_pred HHhccCC
Q psy18032 129 ELGKFTK 135 (333)
Q Consensus 129 ~~~~~~~ 135 (333)
+-....|
T Consensus 283 ~~l~~lg 289 (758)
T COG1444 283 KGLEFLG 289 (758)
T ss_pred HhHHHhC
Confidence 6544454
No 372
>KOG0745|consensus
Probab=86.19 E-value=0.48 Score=44.67 Aligned_cols=50 Identities=24% Similarity=0.162 Sum_probs=29.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH----HHHHHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA----LQTFKFVKELG 131 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~----~q~~~~~~~~~ 131 (333)
-|+|+.+|||||||+.+. -|.++.. -|.+|-=|.|..-| .++...+.++.
T Consensus 227 SNvLllGPtGsGKTllaq--TLAr~ld-----VPfaIcDcTtLTQAGYVGeDVEsvi~KLl 280 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQ--TLARVLD-----VPFAICDCTTLTQAGYVGEDVESVIQKLL 280 (564)
T ss_pred ccEEEECCCCCchhHHHH--HHHHHhC-----CCeEEecccchhhcccccccHHHHHHHHH
Confidence 479999999999997554 3344433 34555444444332 34444555544
No 373
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=86.06 E-value=2.2 Score=42.67 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=54.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+..+||.++|+..+.++++.+.. .++.+...+|+.+.+++...+. +..+|||+| ..+.. .++..++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~----~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT-----~a~~~-GID~p~v 293 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLES----QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVAT-----NAFGM-GIDKPNV 293 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHh----CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEe-----chhhc-cCcCCCC
Confidence 45789999999999999998876 4788899999988766544433 358999999 44443 3678888
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 294 ~~VI~ 298 (591)
T TIGR01389 294 RFVIH 298 (591)
T ss_pred CEEEE
Confidence 88875
No 374
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=85.97 E-value=0.86 Score=46.03 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 46 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
.++.+.+++.|-..+-.+=---+|.-.+.+++++.|.||||||.+. .-++..+.. +|-++||.=|+-+.+..-|
T Consensus 157 ~~l~k~lk~~~~~s~i~I~gvPip~~~E~~H~li~GttGSGKS~~i-~~LL~~ir~----RGdrAIIyD~~GeFv~~FY 230 (732)
T PRK13700 157 KDVARMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQ----RGDMVVIYDRSGEFVKSYY 230 (732)
T ss_pred HHHHHHHHhcCCCCCeeEccccCCcchhhcceEEeCCCCCCHHHHH-HHHHHHHHH----cCCeEEEEeCCCchHHHhc
Confidence 5666777776544333332222333445689999999999999743 455555443 3456666666666655433
No 375
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=85.81 E-value=1.2 Score=38.24 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=24.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
|.-+++.|++|+|||...+--+.+... .+..++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~-----~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG-----QGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEE
Confidence 355899999999999655444433322 255788874
No 376
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=85.79 E-value=6.7 Score=36.23 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=61.6
Q ss_pred CcHHHHhHHHHHhc----CC---cEEEECCCCcHHHHHHHHHHHHHhhhhcc----------------cCCceEEEEccc
Q psy18032 60 PTPIQRKTIPLVLE----GR---DVVAMARTGSGKTACFLIPMLEKLKTHAA----------------TSGVRALILSPT 116 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~----g~---d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----------------~~~~~~lil~Pt 116 (333)
.+|+|+..|..+.+ |+ -.++.||.|+||+..+..-+-..+...+. ...|-..++.|.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE 82 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc
Confidence 56788888877654 33 48899999999996544332222221111 124566777775
Q ss_pred HH----HHHHHHHHHHHHhc---cCCceEEEEECCcchHHH-----HHHhhC---CCCEEEEC--chHHHHHHHh
Q psy18032 117 RE----LALQTFKFVKELGK---FTKLQSTCLLGGDSMDNQ-----FARLHA---SPDIVVAT--PGRFLHIVVE 174 (333)
Q Consensus 117 ~~----L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~-----~~~l~~---~~~IlI~T--P~rll~~l~~ 174 (333)
.. -+.|+.+..+.+.. ..+.+|+.+..-+..... .+.+.+ +.-++..| |++++.-+.+
T Consensus 83 ~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 31 23344443333322 235677777765544332 222333 23344444 5677765553
No 377
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=85.72 E-value=1.2 Score=39.50 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=33.1
Q ss_pred HHHHHhcC-----CcEEEECCCCcHHHH-HHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 67 TIPLVLEG-----RDVVAMARTGSGKTA-CFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 67 ~i~~i~~g-----~d~l~~a~TGsGKT~-~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
.+..++.| .=+=++|+.|||||- |..+.+-..+.......+.+++||.-...+-.+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~ 87 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPE 87 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHH
Confidence 45556654 236689999999994 444444433333222235689999766554443
No 378
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=85.68 E-value=0.82 Score=45.39 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=26.3
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
...+++++.|+||||||. ++..++..+.. .+.+++|+=|.-+
T Consensus 174 ~e~~h~li~G~tGsGKs~-~i~~ll~~~~~----~g~~~ii~D~~g~ 215 (566)
T TIGR02759 174 SETQHILIHGTTGSGKSV-AIRKLLRWIRQ----RGDRAIIYDKGCT 215 (566)
T ss_pred ccccceEEEcCCCCCHHH-HHHHHHHHHHh----cCCeEEEEECCCC
Confidence 345789999999999995 34445555433 1334555555444
No 379
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=85.66 E-value=0.55 Score=45.00 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=31.9
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+..+|++++=-+..++.+++. .+..|.-+..-- +...+.+++.||+|+|||+.+-
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g---i~~p~gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIG---IKPPKGVILYGPPGTGKTLLAK 235 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCcEEEEECCCCCCHHHHHH
Confidence 45567888886444444444432 122211111111 2345679999999999997554
No 380
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=85.65 E-value=1.1 Score=38.94 Aligned_cols=39 Identities=31% Similarity=0.277 Sum_probs=24.8
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
..|.-+++.|++|+|||...+--+.+.+.. .+..+++++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEe
Confidence 345679999999999996444333333322 145677776
No 381
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=85.62 E-value=1.9 Score=39.99 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=24.4
Q ss_pred EEEECCCCcHHHHHHH-HHHHHHhhhhcccCCceEEEEcccH
Q psy18032 77 VVAMARTGSGKTACFL-IPMLEKLKTHAATSGVRALILSPTR 117 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~lil~Pt~ 117 (333)
+.+.|++|||||...+ +.+-..+.......+.+++||....
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 7799999999995433 3332322211111235889988744
No 382
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=85.61 E-value=2.5 Score=37.38 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=23.9
Q ss_pred CcHHHHhHHHHHhc----CC-cEEEECCCCcHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLE----GR-DVVAMARTGSGKTACFL 92 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~----g~-d~l~~a~TGsGKT~~~~ 92 (333)
+++.+.+++..+.. +. .+++.||+|+|||....
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 56677777776542 33 58899999999996544
No 383
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=85.38 E-value=4.9 Score=33.18 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=25.3
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
-+++.|++|||||..+.-- .... +...++++.....-.+..+.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l-~~~~-------~~~~~~iat~~~~~~e~~~ri 46 (170)
T PRK05800 3 LILVTGGARSGKSRFAERL-AAQS-------GLQVLYIATAQPFDDEMAARI 46 (170)
T ss_pred EEEEECCCCccHHHHHHHH-HHHc-------CCCcEeCcCCCCChHHHHHHH
Confidence 5899999999999644322 2221 224566665554444444444
No 384
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=85.38 E-value=2.7 Score=39.77 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=41.4
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH-HHHHHHHHHHHHhc
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE-LALQTFKFVKELGK 132 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~-L~~q~~~~~~~~~~ 132 (333)
.++.|+.|||||.+..+-++..+... ..+.+++++-|+.. +-.-++..+.....
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~ 58 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLS 58 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHH
Confidence 57899999999999888888877763 13568999999988 66666777775433
No 385
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=85.30 E-value=3.3 Score=47.25 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=47.6
Q ss_pred CCcHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
.+++-|.+++..++...+ .+++++.|+|||...- .++..+.. .|.++++++||-.-+....+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~----~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLASE----QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHHHh----cCCeEEEEeCCHHHHHHHHHH
Confidence 388999999999988754 9999999999995322 33333332 377899999999877776654
No 386
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=85.18 E-value=1.3 Score=38.25 Aligned_cols=46 Identities=30% Similarity=0.497 Sum_probs=31.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
++.+.|.|.||||||.. +-.++..+.. ..+..++|+=|.-|-+...
T Consensus 23 ~~H~~I~G~TGsGKS~~-~~~ll~~l~~---~~~~~~ii~D~~GEY~~~~ 68 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNT-VKVLLEELLK---KKGAKVIIFDPHGEYASLF 68 (229)
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHh---cCCCCEEEEcCCCcchhhh
Confidence 47899999999999954 3344455542 2356788888877765543
No 387
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=85.17 E-value=0.56 Score=35.93 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.0
Q ss_pred EEEECCCCcHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL 92 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~ 92 (333)
+++.|++|||||...-
T Consensus 2 I~I~G~~gsGKST~a~ 17 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAK 17 (121)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5799999999996433
No 388
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=85.15 E-value=0.63 Score=35.98 Aligned_cols=16 Identities=25% Similarity=0.357 Sum_probs=13.2
Q ss_pred EEEECCCCcHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL 92 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~ 92 (333)
+++.||+|+|||...-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999996443
No 389
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=85.09 E-value=1.9 Score=39.57 Aligned_cols=43 Identities=28% Similarity=0.304 Sum_probs=29.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
|+-+.+.+|+|||||...+-.+.+... .+..++++..-..+-.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~-----~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEcccchhHH
Confidence 456899999999999755544444332 2567888876655544
No 390
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=85.03 E-value=1.4 Score=35.99 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCCC-----CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 46 FEVLKGVLKRGYKI-----PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 46 ~~l~~~l~~~g~~~-----~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
+++++..+++||+. -+....+.+...++++-++++|++|.|||. +++.+..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSS-----LiN~L~~ 57 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSS-----LINALLP 57 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHH-----HHHHHHT
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHH-----HHHHHHh
Confidence 45677788888862 245667778888889999999999999995 5565554
No 391
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=84.83 E-value=1.4 Score=38.05 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
|.-+++.|++|+|||...+--+.+.+.. +.+++++.-.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~-----~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN-----GKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEECC
Confidence 4568999999999996554444443332 4567777544
No 392
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=84.76 E-value=0.64 Score=42.16 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.1
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
=+++.||||||||..++
T Consensus 6 ii~I~GpTasGKS~LAl 22 (300)
T PRK14729 6 IVFIFGPTAVGKSNILF 22 (300)
T ss_pred EEEEECCCccCHHHHHH
Confidence 38899999999996544
No 393
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=84.72 E-value=0.65 Score=45.31 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=31.5
Q ss_pred cCCCcccccC-CCHHHHHHHHh--CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 34 KMGGGFQSFG-LGFEVLKGVLK--RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 34 ~~~~~f~~~~-l~~~l~~~l~~--~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+..+|++++ +++.+.+.... ..+..|..+...-+ ...+.+++.||+|+|||...
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl---~~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL---KPPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC---CCCcceEEECCCCCcHHHHH
Confidence 3456889987 55554433322 12333322222222 12467999999999999743
No 394
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=84.65 E-value=3.1 Score=34.66 Aligned_cols=58 Identities=21% Similarity=0.134 Sum_probs=32.6
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-----ccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHA-----ATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.|.=+++.||+|+|||...+--+...+...+ ...+.+++++..-.. ..++.+.+..+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 4566999999999999644433333332100 113456777766555 667777777654
No 395
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=84.65 E-value=1.2 Score=37.96 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=16.8
Q ss_pred hHHHH-HhcCCcEEEECCCCcHHHHHHH
Q psy18032 66 KTIPL-VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 66 ~~i~~-i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+++.. +..+.++++.+|.|+|||..+-
T Consensus 13 rAL~iAAaG~h~lLl~GppGtGKTmlA~ 40 (206)
T PF01078_consen 13 RALEIAAAGGHHLLLIGPPGTGKTMLAR 40 (206)
T ss_dssp HHHHHHHHCC--EEEES-CCCTHHHHHH
T ss_pred HHHHHHHcCCCCeEEECCCCCCHHHHHH
Confidence 34444 3346789999999999996443
No 396
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=84.54 E-value=2 Score=39.40 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=30.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
|+=+.+.+|+|||||...+-.+.+... .+..++++.+-..+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~-----~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK-----LGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCCEEEECccccHHH
Confidence 456899999999999655544444332 2668999987766554
No 397
>KOG0733|consensus
Probab=84.40 E-value=0.79 Score=45.10 Aligned_cols=54 Identities=20% Similarity=0.082 Sum_probs=30.7
Q ss_pred CCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 36 GGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+|++.|--+++...|.-. .+++|..++.--+ ..-..+|++||+|+|||+.+=
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi---~~PsGvLL~GPPGCGKTLlAK 563 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI---DAPSGVLLCGPPGCGKTLLAK 563 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC---CCCCceEEeCCCCccHHHHHH
Confidence 35777777555555444321 2333322222211 113469999999999998544
No 398
>PRK13531 regulatory ATPase RavA; Provisional
Probab=84.37 E-value=1.1 Score=43.40 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=23.4
Q ss_pred HHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 63 IQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 63 ~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+=..++-+++.|.++++.||+|+|||..+-
T Consensus 28 vI~lll~aalag~hVLL~GpPGTGKT~LAr 57 (498)
T PRK13531 28 AIRLCLLAALSGESVFLLGPPGIAKSLIAR 57 (498)
T ss_pred HHHHHHHHHccCCCEEEECCCChhHHHHHH
Confidence 334455567789999999999999997653
No 399
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=84.17 E-value=0.75 Score=44.97 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=34.8
Q ss_pred cCCCcccccCCCHHHHHHHHhC--CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKR--GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+..+|+++.-.++..+.+.+. -+..|..++... ....+++++.||+|+|||...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 5677999998777776666542 123333222211 112357999999999999654
No 400
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=84.17 E-value=1.5 Score=37.12 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=16.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
.++++.|+||||||.+...-+.+.+.
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 48999999999999765544444433
No 401
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=84.10 E-value=0.65 Score=43.08 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=21.8
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
+|+-+|+.+|+|||||+.+ +++.+.+-. +-|.+-+..
T Consensus 49 aGr~iLiaGppGtGKTAlA-~~ia~eLG~----~~PF~~isg 85 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALA-MAIAKELGE----DVPFVSISG 85 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHH-HHHHHHCTT----TS-EEEEEG
T ss_pred cCcEEEEeCCCCCCchHHH-HHHHHHhCC----CCCeeEccc
Confidence 4678999999999999644 344444443 345555443
No 402
>KOG0384|consensus
Probab=83.96 E-value=4.1 Score=43.32 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=82.0
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHH---HHHHHHHHHHhhhhcccC
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKT---ACFLIPMLEKLKTHAATS 106 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT---~~~~l~~l~~l~~~~~~~ 106 (333)
..-..|..+...|..+.. ..++.+|.+.+.-++ ++.|+|+.---|-||| .+|+-.+.+...- .
T Consensus 351 ~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~----~ 420 (1373)
T KOG0384|consen 351 PQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI----H 420 (1373)
T ss_pred ccchhHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc----c
Confidence 444677777766665543 568888888776654 5789999999999998 3555555544322 3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----C-----CCCEEEECchHHHH
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----A-----SPDIVVATPGRFLH 170 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~-----~~~IlI~TP~rll~ 170 (333)
|| .||++|...+..= .+.+.. .++..+++.+|.....+.++... . ..++|++|-+.++.
T Consensus 421 gp-flvvvplst~~~W-~~ef~~---w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk 488 (1373)
T KOG0384|consen 421 GP-FLVVVPLSTITAW-EREFET---WTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK 488 (1373)
T ss_pred CC-eEEEeehhhhHHH-HHHHHH---HhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc
Confidence 54 7888998776543 233444 34788888888887665554421 1 37899999888763
No 403
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=83.88 E-value=1 Score=42.97 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=19.3
Q ss_pred hHHHHH-hcCCcEEEECCCCcHHHHHH
Q psy18032 66 KTIPLV-LEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i-~~g~d~l~~a~TGsGKT~~~ 91 (333)
+++... .-|+|+++.+|+|||||+.+
T Consensus 189 rAleiAAAGgHnLl~~GpPGtGKTmla 215 (490)
T COG0606 189 RALEIAAAGGHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHHHHHhcCCcEEEecCCCCchHHhh
Confidence 344443 33689999999999999754
No 404
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=83.73 E-value=0.73 Score=38.65 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=21.3
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTAC 90 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~ 90 (333)
.++..+++|.| +++.|+||||||..
T Consensus 14 ~~v~~~~~G~n~~i~~yG~tGsGKT~T 40 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYT 40 (186)
T ss_pred HHHHHHhCCcceeEEEECCCCCcceEe
Confidence 67788889987 88999999999954
No 405
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=83.36 E-value=1.7 Score=45.84 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=29.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
-|.+|.|+||||||.....-+.+.+.. .+++++|+=|-++
T Consensus 476 ~n~~I~G~TGSGKS~l~~~li~q~~~~----~~~~v~IiD~g~s 515 (893)
T TIGR03744 476 AHLLILGPTGAGKSATLTNLLMQVMAV----HRPRLFIVEAGNS 515 (893)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHHHHh----cCCEEEEEcCCCC
Confidence 479999999999997665544444432 2568888888776
No 406
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=83.04 E-value=0.77 Score=35.28 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=13.2
Q ss_pred EEEECCCCcHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL 92 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~ 92 (333)
+++.|++|||||...-
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999997544
No 407
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=82.86 E-value=0.78 Score=36.20 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=12.3
Q ss_pred EEEECCCCcHHHHH
Q psy18032 77 VVAMARTGSGKTAC 90 (333)
Q Consensus 77 ~l~~a~TGsGKT~~ 90 (333)
++++|++|||||..
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999964
No 408
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.85 E-value=8.5 Score=35.27 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=50.7
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEE-ECCcchHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCL-LGGDSMDNQFAR 153 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 153 (333)
++++|-.|+|||....=- .+... ..|.++++.+ .-|+=|.+|.+.+-+ ..|+.++.- .|+.+..-....
T Consensus 142 il~vGVNG~GKTTTIaKL--A~~l~---~~g~~VllaA~DTFRAaAiEQL~~w~e---r~gv~vI~~~~G~DpAaVafDA 213 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKL--AKYLK---QQGKSVLLAAGDTFRAAAIEQLEVWGE---RLGVPVISGKEGADPAAVAFDA 213 (340)
T ss_pred EEEEecCCCchHhHHHHH--HHHHH---HCCCeEEEEecchHHHHHHHHHHHHHH---HhCCeEEccCCCCCcHHHHHHH
Confidence 889999999999754422 12222 2355666665 356767666555554 467777663 455554333222
Q ss_pred ----hhCCCCEE-EECchHHH
Q psy18032 154 ----LHASPDIV-VATPGRFL 169 (333)
Q Consensus 154 ----l~~~~~Il-I~TP~rll 169 (333)
..++.+++ |=|.+||.
T Consensus 214 i~~Akar~~DvvliDTAGRLh 234 (340)
T COG0552 214 IQAAKARGIDVVLIDTAGRLH 234 (340)
T ss_pred HHHHHHcCCCEEEEeCccccc
Confidence 33466655 67999986
No 409
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=82.82 E-value=1.6 Score=39.83 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=24.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhh-cccCCceEEEEcccH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTH-AATSGVRALILSPTR 117 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~~lil~Pt~ 117 (333)
.=+.+.||+|+|||...+--+.+..... ....+..+++|.-..
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 4478999999999954443333332211 111133788888443
No 410
>PRK08084 DNA replication initiation factor; Provisional
Probab=82.76 E-value=2.7 Score=36.72 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=22.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
..++++||+|+|||.... .+.+.+.. .+.+++++.-
T Consensus 46 ~~l~l~Gp~G~GKThLl~-a~~~~~~~----~~~~v~y~~~ 81 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH-AACAELSQ----RGRAVGYVPL 81 (235)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh----CCCeEEEEEH
Confidence 579999999999995443 22333332 2445666544
No 411
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=82.75 E-value=0.85 Score=37.79 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=13.2
Q ss_pred cEEEECCCCcHHHHH
Q psy18032 76 DVVAMARTGSGKTAC 90 (333)
Q Consensus 76 d~l~~a~TGsGKT~~ 90 (333)
++++.+|||+|||..
T Consensus 5 ~~ll~GpsGvGKT~l 19 (171)
T PF07724_consen 5 NFLLAGPSGVGKTEL 19 (171)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999953
No 412
>PRK09354 recA recombinase A; Provisional
Probab=82.63 E-value=2.6 Score=39.12 Aligned_cols=43 Identities=30% Similarity=0.306 Sum_probs=31.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
|+=+.+.+|+|||||...+-.+.+... .+..++++..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~-----~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEECCccchHH
Confidence 456889999999999766655554433 2668888887776664
No 413
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=82.63 E-value=2.1 Score=39.24 Aligned_cols=55 Identities=7% Similarity=0.003 Sum_probs=30.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHHH-HhhhhcccCCceEEEEcccHHH-HHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLE-KLKTHAATSGVRALILSPTREL-ALQTFKFVKE 129 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~-~l~~~~~~~~~~~lil~Pt~~L-~~q~~~~~~~ 129 (333)
.=+.+.|++|+|||...+-.++. .+.......+.+++|+.--..+ ..++.+..+.
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999544433332 2221111224588998855433 3444444444
No 414
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=82.53 E-value=2.4 Score=45.91 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=45.9
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
-.+.+++|.|..|||||.+-.--++..+....+-.-.+.|+++.|++=+.++..++..
T Consensus 14 ~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 14 PPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHH
Confidence 3467999999999999988887777777763211234799999999999999888875
No 415
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.34 E-value=2.3 Score=36.70 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=15.2
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+..++++||+|+|||....
T Consensus 42 ~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999995433
No 416
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=82.34 E-value=3.3 Score=35.74 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=29.0
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
+++.||+|+|||- .+-++.+.+... .++.+++++. ..+......+.++
T Consensus 37 l~l~G~~G~GKTH-LL~Ai~~~~~~~--~~~~~v~y~~-~~~f~~~~~~~~~ 84 (219)
T PF00308_consen 37 LFLYGPSGLGKTH-LLQAIANEAQKQ--HPGKRVVYLS-AEEFIREFADALR 84 (219)
T ss_dssp EEEEESTTSSHHH-HHHHHHHHHHHH--CTTS-EEEEE-HHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHH-HHHHHHHHHHhc--cccccceeec-HHHHHHHHHHHHH
Confidence 8999999999997 344455554431 1244666654 3466665555444
No 417
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=82.16 E-value=7.2 Score=40.61 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=57.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC----CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA----SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
++.+||.+|+..-+...++.+++... .++.+..++|+.+.+++.+.+.. ...|||+| +..+ ..+++.++
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVAT-----nIAE-rgItIp~V 281 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLAT-----NIAE-TSLTIEGI 281 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEec-----chHh-hcccccCc
Confidence 45799999999999999998886322 47889999999998888777653 36899999 4444 34778888
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 282 ~~VID 286 (819)
T TIGR01970 282 RVVID 286 (819)
T ss_pred eEEEE
Confidence 88885
No 418
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=82.11 E-value=3.6 Score=42.77 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=28.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
.++++.|+||||||.....-+.+.+. .+.+++|+=|..+.
T Consensus 431 ~n~~I~G~tGsGKS~~~~~l~~~~~~-----~g~~v~iiD~~~sy 470 (797)
T TIGR02746 431 YNIAVVGGSGAGKSFFMQELIVDNLS-----RGGKVWVIDVGRSY 470 (797)
T ss_pred cceEEEcCCCCCHHHHHHHHHHHHHh-----CCCEEEEEeCCCCH
Confidence 47999999999999766543333332 26788998887654
No 419
>PF05729 NACHT: NACHT domain
Probab=82.10 E-value=2.6 Score=33.79 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=25.1
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCC-ceEEEEcccHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSG-VRALILSPTRELALQ 122 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~-~~~lil~Pt~~L~~q 122 (333)
+++.|++|+|||... --+...+........ ...++..+.+....+
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 689999999999644 344444444221111 234555555555443
No 420
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=82.08 E-value=0.96 Score=40.78 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.9
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999997663
No 421
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=81.91 E-value=0.96 Score=35.76 Aligned_cols=43 Identities=28% Similarity=0.330 Sum_probs=28.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
.|.-+++.|+.|+|||. +.-.++..+.. ..-|-+||-.|++..
T Consensus 21 ~~~~i~l~G~lGaGKTt-l~~~l~~~lg~-------~~~v~SPTf~lv~~Y 63 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTT-LVQGLLQGLGI-------QGNVTSPTFTLVNEY 63 (133)
T ss_pred CCCEEEEEcCCCCCHHH-HHHHHHHHcCC-------CCcccCCCeeeeeec
Confidence 45568899999999995 44444444322 223778988776653
No 422
>CHL00181 cbbX CbbX; Provisional
Probab=81.86 E-value=3.2 Score=37.44 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=16.9
Q ss_pred CCcEEEECCCCcHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIP 94 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~ 94 (333)
|.++++.||+|+|||..+-.-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999766544
No 423
>PRK13767 ATP-dependent helicase; Provisional
Probab=81.82 E-value=6.8 Score=41.24 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=54.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhc--cCCceEEEEECCcchHHHHHH---hhC-CCCEEEECchHHHHHHHhcccccc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGK--FTKLQSTCLLGGDSMDNQFAR---LHA-SPDIVVATPGRFLHIVVEMELKLS 180 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~---l~~-~~~IlI~TP~rll~~l~~~~~~~~ 180 (333)
+.++||.++|+..|..++..++.... ..+..+...+|+.+.+++... +++ ..+|||||. .+.. .+++.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs-----~Le~-GIDip 357 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSST-----SLEL-GIDIG 357 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hHHh-cCCCC
Confidence 45799999999999999999887432 134678888999887665433 333 489999995 3443 46777
Q ss_pred CchhhHH
Q psy18032 181 SIQYTFK 187 (333)
Q Consensus 181 ~l~~lV~ 187 (333)
++.++|.
T Consensus 358 ~Vd~VI~ 364 (876)
T PRK13767 358 YIDLVVL 364 (876)
T ss_pred CCcEEEE
Confidence 7777774
No 424
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=81.82 E-value=0.93 Score=38.22 Aligned_cols=32 Identities=50% Similarity=0.784 Sum_probs=25.3
Q ss_pred ccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 298 VLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 298 vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
+.++.++.-.+.||+|||.++++|+++++...
T Consensus 33 ~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~ 64 (203)
T cd00268 33 LLSGRDVIGQAQTGSGKTAAFLIPILEKLDPS 64 (203)
T ss_pred HhcCCcEEEECCCCCcHHHHHHHHHHHHHHhh
Confidence 33345666778899999999999999887653
No 425
>KOG1807|consensus
Probab=81.81 E-value=5.8 Score=40.22 Aligned_cols=82 Identities=17% Similarity=0.058 Sum_probs=55.0
Q ss_pred HHHHHHhC--CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc-cCCceEEEEcccHHHHHHHH
Q psy18032 48 VLKGVLKR--GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA-TSGVRALILSPTRELALQTF 124 (333)
Q Consensus 48 l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~lil~Pt~~L~~q~~ 124 (333)
+.+++.-. |...+...|+.|....+..+=.|+++|+|+|||++-+..+=..+..... ...-..+++|-|.--+.|..
T Consensus 365 ~~n~lePp~~g~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~l 444 (1025)
T KOG1807|consen 365 IVNALEPPGPGLVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYL 444 (1025)
T ss_pred hhhhcCCCCCCceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHH
Confidence 44444332 3334566799999999999999999999999998877665444443211 11234778887777667666
Q ss_pred HHHHH
Q psy18032 125 KFVKE 129 (333)
Q Consensus 125 ~~~~~ 129 (333)
..+..
T Consensus 445 igiy~ 449 (1025)
T KOG1807|consen 445 IGIYY 449 (1025)
T ss_pred HHHHh
Confidence 55554
No 426
>PRK06893 DNA replication initiation factor; Validated
Probab=81.78 E-value=2.1 Score=37.13 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=21.4
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.+++.||+|+|||..... +.+.+.. ++..++++.-
T Consensus 41 ~l~l~G~~G~GKThL~~a-i~~~~~~----~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKA-VSNHYLL----NQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHH----cCCCeEEeeH
Confidence 479999999999953332 3333332 2445666554
No 427
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=81.72 E-value=2.4 Score=41.55 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=34.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|.-+++.+++|+|||....--+.+.+.. +-++++++- .+-..++.+.+..++
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~-----g~~~~yis~-e~~~~~i~~~~~~~g 324 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR-----GERCLLFAF-EESRAQLIRNARSWG 324 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC-----CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 4668999999999996554444444332 556777754 455777777776653
No 428
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=81.67 E-value=3.9 Score=41.47 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
.+++-|.+++... .-.++|.|..|||||-+-.--+...+....- ...+.+.++=|+.-|.++.+++..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v-~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGV-DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCc-ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4788999988766 4579999999999998777666666655211 123689999999999999999998754
No 429
>KOG0392|consensus
Probab=81.58 E-value=15 Score=39.37 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=68.1
Q ss_pred cHHHHhHHHH--Hhc--CCcEEEECCCCcHHHHHHHHHHHHHhhhhc-c--c-CCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 61 TPIQRKTIPL--VLE--GRDVVAMARTGSGKTACFLIPMLEKLKTHA-A--T-SGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 61 ~~~Q~~~i~~--i~~--g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~--~-~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
+.+|++.+.- +++ +-+-|+|-.-|-|||+-.+--+........ . . ...-.||+||+. |+-.....+.+|+.
T Consensus 977 RkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT-LtGHW~~E~~kf~p 1055 (1549)
T KOG0392|consen 977 RKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST-LTGHWKSEVKKFFP 1055 (1549)
T ss_pred HHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch-hhhHHHHHHHHhcc
Confidence 4467765543 232 347899999999999755444443333321 1 1 122389999985 56666777777765
Q ss_pred cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
+ +++...+|+...+...+.--++.+|+|++-+-+.
T Consensus 1056 f--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~R 1090 (1549)
T KOG0392|consen 1056 F--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVR 1090 (1549)
T ss_pred h--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHH
Confidence 4 6777777777666555555556899999976654
No 430
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=81.39 E-value=0.97 Score=40.11 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=16.1
Q ss_pred CcEEEECCCCcHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIP 94 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~ 94 (333)
.++++.||+|+|||..+-.-
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47999999999999655433
No 431
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=81.24 E-value=1.2 Score=41.60 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=32.9
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.-+|++++-.+...+.+.+. .+..|..... + -+...+.+++.||+|+|||...-
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~--~-g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEE--V-GIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHh--c-CCCCCceEEEECCCCCCHHHHHH
Confidence 34556788887666665555542 2222221111 0 01224679999999999996443
No 432
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=81.09 E-value=2.1 Score=33.87 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=19.1
Q ss_pred HhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 65 RKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 65 ~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.++-........++++|++||||+.++-
T Consensus 12 ~~l~~~a~~~~pvli~GE~GtGK~~~A~ 39 (138)
T PF14532_consen 12 RQLERLAKSSSPVLITGEPGTGKSLLAR 39 (138)
T ss_dssp HHHHHHHCSSS-EEEECCTTSSHHHHHH
T ss_pred HHHHHHhCCCCcEEEEcCCCCCHHHHHH
Confidence 3333334456789999999999997543
No 433
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=80.98 E-value=1.1 Score=42.35 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=32.1
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.-+|++++--++..+.+.+. .+..|...+..- +...+.+++.||+|+|||..+-
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCCCChHHHHH
Confidence 34456788887555555555442 222222222111 1123579999999999996543
No 434
>PLN02165 adenylate isopentenyltransferase
Probab=80.83 E-value=1.3 Score=40.73 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=16.6
Q ss_pred cCCcEEEECCCCcHHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLI 93 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l 93 (333)
.|+-+++.||||||||..+..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 355699999999999965543
No 435
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=80.75 E-value=2.2 Score=39.12 Aligned_cols=43 Identities=14% Similarity=0.018 Sum_probs=25.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcccH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTR 117 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~Pt~ 117 (333)
.=+.++|++|+|||...+--+.+...... ...+..++++.--.
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 45889999999999644433444332211 11134788887543
No 436
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.61 E-value=0.67 Score=37.70 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=23.5
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
.++.+|.|||||..|....... . .+++++.+-++|.|
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~--------~-~~~~~VN~D~iA~~ 41 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPL--------L-PGIVFVNADEIAAQ 41 (187)
T ss_pred EEEecCCCCCceeeeeccchhh--------c-CCeEEECHHHHhhh
Confidence 4778999999998776543332 1 14555555555544
No 437
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=80.61 E-value=1.7 Score=39.27 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=27.1
Q ss_pred EEEECCCCcHHHHHHH-HHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL-IPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
.+|-|||||||+-..- +-..+.+.. ..-.+++|+|+...+--+...
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P----~PETVfFItP~~~mIpp~E~~ 136 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQP----PPETVFFITPQKDMIPPQEIT 136 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccC----CCCceEEECCCCCCCCHHHHH
Confidence 7889999999984111 111111222 123689999998766544433
No 438
>KOG0391|consensus
Probab=80.55 E-value=17 Score=39.00 Aligned_cols=106 Identities=18% Similarity=0.145 Sum_probs=66.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (333)
-|-|+.---|-|||. -.+.++.++......=| --|||+||..+.+ ..-.|+++ +.++++...+|........+.-
T Consensus 635 lNGILADEmGLGKTI-QtISllAhLACeegnWG-PHLIVVpTsviLn-WEMElKRw--cPglKILTYyGs~kErkeKRqg 709 (1958)
T KOG0391|consen 635 LNGILADEMGLGKTI-QTISLLAHLACEEGNWG-PHLIVVPTSVILN-WEMELKRW--CPGLKILTYYGSHKERKEKRQG 709 (1958)
T ss_pred ccceehhhhcccchh-HHHHHHHHHHhcccCCC-CceEEeechhhhh-hhHHHhhh--CCcceEeeecCCHHHHHHHhhc
Confidence 478888889999995 55666677665444334 4789999987654 34446665 4789999999887544433333
Q ss_pred hCC---CCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 155 HAS---PDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 155 ~~~---~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
+.. .|+-|++-..+..-+. .+.-++.+|+|+
T Consensus 710 W~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvL 743 (1958)
T KOG0391|consen 710 WAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVL 743 (1958)
T ss_pred ccCCCeeEEeehhhHHHHhHHH--HHHhhccceeeh
Confidence 332 4555555433332222 244567788884
No 439
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=80.44 E-value=1.2 Score=39.33 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=14.7
Q ss_pred CcEEEECCCCcHHHHH
Q psy18032 75 RDVVAMARTGSGKTAC 90 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~ 90 (333)
+|++..+|+|+|||..
T Consensus 152 knVLFyGppGTGKTm~ 167 (368)
T COG1223 152 KNVLFYGPPGTGKTMM 167 (368)
T ss_pred ceeEEECCCCccHHHH
Confidence 7999999999999963
No 440
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=80.44 E-value=17 Score=35.81 Aligned_cols=94 Identities=22% Similarity=0.312 Sum_probs=65.4
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCc-HHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH-HHHHHHHHHhccCCc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGS-GKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL-QTFKFVKELGKFTKL 136 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGs-GKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~-q~~~~~~~~~~~~~~ 136 (333)
.|-+.....+...+.||.+++.|.||| |+.+|=. +.. .+|..|++.-.-|... ++...++.. +...
T Consensus 235 ~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~q------il~----~~p~~i~l~~~~E~~~~~i~~el~~~--~~~~ 302 (588)
T COG1086 235 PPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQ------ILK----FNPKEIILFSRDEYKLYLIDMELREK--FPEL 302 (588)
T ss_pred CCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHH------HHh----cCCCEEEEecCchHHHHHHHHHHHhh--CCCc
Confidence 477777888889999999999999998 6665444 333 1455666666666554 456666663 2357
Q ss_pred eEEEEECCcchHHHHHHhhCC--CCEEEEC
Q psy18032 137 QSTCLLGGDSMDNQFARLHAS--PDIVVAT 164 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~~l~~~--~~IlI~T 164 (333)
+.....|+....+.....-++ +++++=.
T Consensus 303 ~~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 303 KLRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred ceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 777888888777766666555 8888744
No 441
>CHL00195 ycf46 Ycf46; Provisional
Probab=80.43 E-value=1.9 Score=42.04 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=31.3
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+..+|+++|=-+.+.+.+.+.. ..+...+-.. +...+.+++.||+|+|||+.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~----~~~~~~~~~~gl~~pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRS----TSFSKQASNYGLPTPRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHH----HHhhHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 34567888876666666665420 0010111110 122367999999999999654
No 442
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=80.34 E-value=6.8 Score=36.55 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=45.2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM 175 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~ 175 (333)
.+.++||+++|+.-+..+++.++.. ..+..+..++|..+..++.+.. ..+|+|+| +....+
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~--~~~iLVaT-----dv~~rG 331 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAM--QFDILLGT-----STVDVG 331 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhc--cCCEEEEe-----cHHhcc
Confidence 3568999999999999999999873 2345677778877766554332 57899999 555544
No 443
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=80.24 E-value=4.4 Score=44.00 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=43.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.++++|.|+-|||||....--++..+.... .....++|+-|+.=|.++.+++...
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~--~~~~i~~~t~t~~aa~em~~Ri~~~ 64 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGV--PPSKILCLTYTKAAAAEMQNRVFDR 64 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCC--CCCeEEEEecCHHHHHHHHHHHHHH
Confidence 468999999999999888777777765532 2347999999999999988777754
No 444
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=80.21 E-value=11 Score=36.35 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=28.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
..+++.||+|+|||.... ++.+.+... ..+.+++++.. ..+..+....+
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~--~~~~~v~yi~~-~~f~~~~~~~~ 179 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQN--EPDLRVMYITS-EKFLNDLVDSM 179 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHh--CCCCeEEEEEH-HHHHHHHHHHH
Confidence 359999999999996443 344444431 12345666654 45555554433
No 445
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=80.21 E-value=2.9 Score=35.86 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=12.8
Q ss_pred EEEECCCCcHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLI 93 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l 93 (333)
.++.||||+|||...+.
T Consensus 4 ~~i~GpT~tGKt~~ai~ 20 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIA 20 (233)
T ss_dssp EEEE-STTSSHHHHHHH
T ss_pred EEEECCCCCChhHHHHH
Confidence 57899999999975553
No 446
>PRK13342 recombination factor protein RarA; Reviewed
Probab=80.16 E-value=12 Score=35.67 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.7
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
++++.||+|+|||..+.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999996554
No 447
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=80.14 E-value=7.8 Score=35.90 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=42.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH-------HhhC-CCCEEEECc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA-------RLHA-SPDIVVATP 165 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~l~~-~~~IlI~TP 165 (333)
+.++||+++|++-+..+++.+++.+ .+..+..++|+.+..++.+ .+.+ ...|||+|.
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~--~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~ 286 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENA--PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ 286 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhc--CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc
Confidence 5689999999999999999998743 3346888899876655432 2233 478999993
No 448
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=80.09 E-value=1.5 Score=40.36 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++.|+||||||....
T Consensus 66 ~v~~~l~G~n~~i~ayG~tgSGKT~Tm~ 93 (335)
T PF00225_consen 66 LVDSVLDGYNATIFAYGQTGSGKTYTMF 93 (335)
T ss_dssp HHHHHHTT-EEEEEEEESTTSSHHHHHT
T ss_pred HHHHhhcCCceEEEeecccccccccccc
Confidence 3555678987 8889999999996544
No 449
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=80.05 E-value=2.3 Score=36.87 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=20.8
Q ss_pred HhcCCcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
+-.|.-+.+.||+|||||. ++-++.-+..
T Consensus 28 i~~Ge~vaI~GpSGSGKST--LLniig~ld~ 56 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKST--LLNLLGGLDK 56 (226)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhcccC
Confidence 3457779999999999995 4445555554
No 450
>KOG2373|consensus
Probab=79.99 E-value=0.62 Score=42.63 Aligned_cols=81 Identities=28% Similarity=0.303 Sum_probs=45.4
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH---HhcC----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccC
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL---VLEG----RDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---i~~g----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~ 106 (333)
+...+|.+ +.+.++..|.. .++-.-+|.+-+|. +++| +=.++.+|||||||.-..-..+.-...
T Consensus 230 k~i~sf~~--mRe~ilseL~N--~e~v~G~~WkRFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~Q----- 300 (514)
T KOG2373|consen 230 KGIRSFTD--MREGILSELLN--TERVVGFQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQ----- 300 (514)
T ss_pred hhhhhHHH--HHHHHHHHHhh--hhhhhceeehhhhHHHHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhh-----
Confidence 44456665 55666655544 23333334444443 4554 459999999999996444444444333
Q ss_pred CceEEE---EcccHHHHHHH
Q psy18032 107 GVRALI---LSPTRELALQT 123 (333)
Q Consensus 107 ~~~~li---l~Pt~~L~~q~ 123 (333)
|..+|+ =.|..-|+.-+
T Consensus 301 GVnTLwgSFEi~n~rla~~m 320 (514)
T KOG2373|consen 301 GVNTLWGSFEIPNKRLAHWM 320 (514)
T ss_pred hhhheeeeeecchHHHHHHH
Confidence 444443 34666666544
No 451
>PRK00131 aroK shikimate kinase; Reviewed
Probab=79.91 E-value=1.2 Score=36.39 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=16.6
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..++++|++|||||...-
T Consensus 3 ~~~~i~l~G~~GsGKstla~ 22 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGR 22 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHH
Confidence 46789999999999996544
No 452
>KOG0733|consensus
Probab=79.78 E-value=1.9 Score=42.56 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=38.0
Q ss_pred cccccCCCcccccCCCHHHHHHHHhC--CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 30 DKKKKMGGGFQSFGLGFEVLKGVLKR--GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
...+....+|+++|=-+..+..|.++ .+.+|-.++.--+ .=-+.+|+.||+|+|||..+-
T Consensus 180 ~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~lA~ 241 (802)
T KOG0733|consen 180 LEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSLAN 241 (802)
T ss_pred cCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHHHH
Confidence 33445566899998444444444443 3666666654432 123689999999999996443
No 453
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=79.55 E-value=1.3 Score=40.99 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=20.3
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..+..++.|.| +++.|+||||||...
T Consensus 78 plv~~~~~G~n~~i~ayGqtGSGKTyTm 105 (338)
T cd01370 78 PLVDGVLNGYNATVFAYGATGAGKTHTM 105 (338)
T ss_pred HHHHHHHCCCCceEEeeCCCCCCCeEEE
Confidence 34555678887 899999999999654
No 454
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=79.51 E-value=22 Score=37.13 Aligned_cols=47 Identities=17% Similarity=0.058 Sum_probs=29.4
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC---CcEEEECCCCcHHHHHHHHHHHHH
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG---RDVVAMARTGSGKTACFLIPMLEK 98 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g---~d~l~~a~TGsGKT~~~~l~~l~~ 98 (333)
++|+++=-++.+.+.|+.. +.++ .-.|+.+|.|+|||.++.+-+-..
T Consensus 12 ~~f~eiiGqe~v~~~L~~~---------------i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTA---------------LDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred CCHHHhcCcHHHHHHHHHH---------------HHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3566665566665555432 2223 237999999999998776554443
No 455
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=79.28 E-value=2.4 Score=38.83 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.1
Q ss_pred cEEEECCCCcHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLI 93 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l 93 (333)
.+++.||+|+|||.....
T Consensus 38 ~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 699999999999965543
No 456
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=79.25 E-value=8.8 Score=38.93 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=53.2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
++.++||.++|+..+..+.+.+.. .|+.+..++|+.+..++.+.+ .. ..+|+||| +.+.++ +++.+
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~----~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~rG-fDiP~ 510 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKE----LGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG-LDLPE 510 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhh----hccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----ChhcCC-eeeCC
Confidence 477999999999999999988887 478888888887665543333 22 48899999 555544 66777
Q ss_pred chhhHH
Q psy18032 182 IQYTFK 187 (333)
Q Consensus 182 l~~lV~ 187 (333)
++++|+
T Consensus 511 v~lVvi 516 (655)
T TIGR00631 511 VSLVAI 516 (655)
T ss_pred CcEEEE
Confidence 777664
No 457
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=79.20 E-value=2.3 Score=39.03 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=19.4
Q ss_pred HHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
++-.+..++++++.+|+|+|||...
T Consensus 57 vl~~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 57 ICAGFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHhcCCcEEEEeCCCChHHHHH
Confidence 3344566889999999999999533
No 458
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=79.18 E-value=9.3 Score=35.95 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=34.1
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh--ccCCceEEEEECCc
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG--KFTKLQSTCLLGGD 145 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~g~~ 145 (333)
+.|+.||+|+|||..+-+-+-.. +....-++.+..=+.++.+.+++-- ...|-+.+++....
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~--------~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEI 113 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTT--------NAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEI 113 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhh--------CCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehh
Confidence 79999999999997555432211 2234455555544444444444321 11245666665543
No 459
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=79.11 E-value=12 Score=39.15 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=57.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC----CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA----SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
++.+||.+|++.-+....+.++.... .++.+..++|+.+..++.+.+.. ...|||+|. ..+ ..+++.++
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~-~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----IAE-rsLtIp~V 284 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVA-SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----IAE-TSLTIEGI 284 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhcc-CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----hHH-hcccccCc
Confidence 46899999999999999999986321 36888899999998887776653 368999994 444 34778888
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 285 ~~VID 289 (812)
T PRK11664 285 RLVVD 289 (812)
T ss_pred eEEEE
Confidence 88885
No 460
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=79.02 E-value=2.8 Score=37.96 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=30.4
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCC---cEEEECCCCcHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR---DVVAMARTGSGKTAC 90 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~---d~l~~a~TGsGKT~~ 90 (333)
+...+.+.|.+.++..+.+- -..+..+...+ -+++.|++|||||..
T Consensus 60 l~~~V~~~L~~~~~~~~~~~-y~~~~~i~~~~~p~iIlI~G~sgsGKStl 108 (301)
T PRK04220 60 LRRRVYYKLIEKDYEEVAEK-YLLWRRIRKSKEPIIILIGGASGVGTSTI 108 (301)
T ss_pred HHHHHHHHHHHhCcHhHHHH-HHHHHHHhcCCCCEEEEEECCCCCCHHHH
Confidence 45566677888777765432 33444444433 489999999999963
No 461
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=79.01 E-value=28 Score=34.17 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=16.4
Q ss_pred cEEEECCCCcHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPM 95 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~ 95 (333)
..+++||.|+|||.++.+-+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 69999999999997665443
No 462
>KOG0652|consensus
Probab=78.99 E-value=2.7 Score=37.16 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=35.3
Q ss_pred CCCcccccCCCcccccC-CCHHHHHHHHhC--CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 27 NTGDKKKKMGGGFQSFG-LGFEVLKGVLKR--GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 27 ~~~~~~~~~~~~f~~~~-l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+.-+...++.-++++.| |...|++..... ...++-.+-.-- +.--+.++.-+|+|+|||+.+-
T Consensus 158 kaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lg---i~pPKGvLmYGPPGTGKTlmAR 223 (424)
T KOG0652|consen 158 KAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLG---IRPPKGVLMYGPPGTGKTLMAR 223 (424)
T ss_pred ceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcC---CCCCCceEeeCCCCCcHHHHHH
Confidence 33444556777788875 666666554432 111111111000 1223689999999999997543
No 463
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=78.95 E-value=1.6 Score=44.86 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+|++++..+.+.+.|.+. .+..|..++..- +...+.+++.||+|+|||+.+-
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHHH
Confidence 346888888888887777663 223222222111 1223569999999999996443
No 464
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=78.90 E-value=1.5 Score=36.70 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=15.5
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
|..+++.||+|||||...-
T Consensus 2 g~~i~l~G~sGsGKsTl~~ 20 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLA 20 (186)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999996443
No 465
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=78.77 E-value=14 Score=30.19 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=52.9
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcc---------------cCCceEEEEcccHH----HHHHHHHHHHHHhcc---
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAA---------------TSGVRALILSPTRE----LALQTFKFVKELGKF--- 133 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~---------------~~~~~~lil~Pt~~----L~~q~~~~~~~~~~~--- 133 (333)
..|+.||.|+||+..+..-+-..+..... ...+-..++.|... .+.|+. .+......
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~ 99 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLSPS 99 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS-T
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH-HHHHHHHHHHh
Confidence 47999999999986555444333333222 23567788888764 344444 44443322
Q ss_pred -CCceEEEEECCcchHHH-----HHHhhC---CCCEEEEC--chHHHHHHHhc
Q psy18032 134 -TKLQSTCLLGGDSMDNQ-----FARLHA---SPDIVVAT--PGRFLHIVVEM 175 (333)
Q Consensus 134 -~~~~~~~~~g~~~~~~~-----~~~l~~---~~~IlI~T--P~rll~~l~~~ 175 (333)
.+.++..+......... ++.+.+ ++.++.+| |.+++.-+..+
T Consensus 100 ~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR 152 (162)
T PF13177_consen 100 EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR 152 (162)
T ss_dssp TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT
T ss_pred cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh
Confidence 24678888776654332 222332 34444444 45566555543
No 466
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=78.71 E-value=26 Score=32.10 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=25.0
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhc-----------ccCCceEEEEccc
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHA-----------ATSGVRALILSPT 116 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~-----------~~~~~~~lil~Pt 116 (333)
-.++.||.|+||+..+.. +...+.... ....|-..++.|+
T Consensus 28 a~Lf~G~~G~Gk~~~A~~-~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 28 AYLFAGPEGVGRKLAALC-FIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 599999999999964432 333333211 1234666888885
No 467
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=78.63 E-value=1.3 Score=40.68 Aligned_cols=27 Identities=48% Similarity=0.621 Sum_probs=20.7
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
..+..++.|.| +++.|+||||||.+..
T Consensus 75 plv~~~~~G~n~~i~ayGqtGSGKTyTm~ 103 (322)
T cd01367 75 PLIPHVFEGGVATCFAYGQTGSGKTYTML 103 (322)
T ss_pred HHHHHHhCCCceEEEeccCCCCCCceEec
Confidence 34556777887 8889999999996543
No 468
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=78.62 E-value=1.5 Score=40.05 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=14.3
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
=++++||||||||....
T Consensus 6 ~i~i~GptgsGKt~la~ 22 (307)
T PRK00091 6 VIVIVGPTASGKTALAI 22 (307)
T ss_pred EEEEECCCCcCHHHHHH
Confidence 37899999999997555
No 469
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=78.51 E-value=1.5 Score=41.77 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.5
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.++++.||||+|||..+-
T Consensus 109 ~~iLl~Gp~GtGKT~lAr 126 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQ 126 (412)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 579999999999997554
No 470
>KOG0989|consensus
Probab=78.49 E-value=3.2 Score=37.50 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=19.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEK 98 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~ 98 (333)
-+.+..||+|+|||.++.+.+-+.
T Consensus 58 p~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHh
Confidence 369999999999998877665544
No 471
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=78.47 E-value=1.6 Score=40.08 Aligned_cols=26 Identities=38% Similarity=0.676 Sum_probs=20.5
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..++.++.|.| +++.|+||||||...
T Consensus 71 plv~~~~~G~n~~i~ayG~tgSGKTyTm 98 (319)
T cd01376 71 PIVPHLLSGQNATVFAYGSTGAGKTHTM 98 (319)
T ss_pred HHHHHHhCCCceEEEEECCCCCCCcEEE
Confidence 34556788987 888899999999644
No 472
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=78.40 E-value=2.9 Score=43.32 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=23.7
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
+++|+||||+|||...-+-+.+.... ..++++++=+-+.
T Consensus 438 hT~I~G~tGaGKTvLl~~llaq~~k~----~~~~iv~fDk~~g 476 (796)
T COG3451 438 HTLIIGPTGAGKTVLLSFLLAQALKY----GNPQIVAFDKDNG 476 (796)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHh----cCCcEEEEcCCCc
Confidence 79999999999995333333333222 1256666655554
No 473
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=78.35 E-value=8 Score=36.66 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=29.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccH-------HHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTR-------ELALQTFKFVKE 129 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~-------~L~~q~~~~~~~ 129 (333)
.-+++.||+|+|||-..... .+.+... ....+++++.... ++-..-.+.|++
T Consensus 114 nplfi~G~~GlGKTHLl~Ai-gn~~~~~--~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~ 172 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAI-GNEALAN--GPNARVVYLTSEDFTNDFVKALRDNEMEKFKE 172 (408)
T ss_pred CcEEEECCCCCCHHHHHHHH-HHHHHhh--CCCceEEeccHHHHHHHHHHHHHhhhHHHHHH
Confidence 34999999999999633322 2222221 1233666766654 344444455555
No 474
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=78.09 E-value=2.7 Score=36.15 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=21.5
Q ss_pred HhcCCcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
+.+|.=+.+++|+|||||. ++-.++.+..
T Consensus 25 v~~Gevv~iiGpSGSGKST--lLRclN~LE~ 53 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKST--LLRCLNGLEE 53 (240)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHHCCcC
Confidence 3456679999999999984 4556666655
No 475
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=78.07 E-value=1.6 Score=40.19 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=20.6
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..++.++.|.| +++.|+||||||...
T Consensus 67 ~~v~~~~~G~n~~i~ayG~tgSGKT~Tm 94 (325)
T cd01369 67 PIVDDVLNGYNGTIFAYGQTGSGKTYTM 94 (325)
T ss_pred HHHHHHHcCccceEEEeCCCCCCceEEe
Confidence 45566688887 899999999999653
No 476
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=78.01 E-value=1.4 Score=40.92 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.++.++.|.| +++.|+||||||...
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm 106 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTM 106 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEe
Confidence 4555677877 888899999999654
No 477
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=77.96 E-value=8.4 Score=32.51 Aligned_cols=14 Identities=43% Similarity=0.461 Sum_probs=11.8
Q ss_pred cEEEECCCCcHHHH
Q psy18032 76 DVVAMARTGSGKTA 89 (333)
Q Consensus 76 d~l~~a~TGsGKT~ 89 (333)
-+-+-+|.|||||.
T Consensus 15 ~i~v~Gp~GSGKTa 28 (202)
T COG0378 15 RIGVGGPPGSGKTA 28 (202)
T ss_pred EEEecCCCCcCHHH
Confidence 46788999999995
No 478
>PHA00729 NTP-binding motif containing protein
Probab=77.93 E-value=5.3 Score=34.64 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=28.1
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhh---------cccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTH---------AATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~---------~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
++++.|++|+|||..+. .+...+... .-..+ ...++.+..+|...+.+.+.
T Consensus 19 nIlItG~pGvGKT~LA~-aLa~~l~~~l~~l~~~~~~~d~~-~~~~fid~~~Ll~~L~~a~~ 78 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL-KVARDVFWKLNNLSTKDDAWQYV-QNSYFFELPDALEKIQDAID 78 (226)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHHhhcccccchhhHHhcC-CcEEEEEHHHHHHHHHHHHh
Confidence 79999999999995333 222222100 00112 23445566777777665443
No 479
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=77.89 E-value=19 Score=32.99 Aligned_cols=116 Identities=13% Similarity=0.168 Sum_probs=64.7
Q ss_pred CcHHHHhHHHHHhc----CC---cEEEECCCCcHHHHHHHHHHHHHhhhhc---------------ccCCceEEEEcccH
Q psy18032 60 PTPIQRKTIPLVLE----GR---DVVAMARTGSGKTACFLIPMLEKLKTHA---------------ATSGVRALILSPTR 117 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~----g~---d~l~~a~TGsGKT~~~~l~~l~~l~~~~---------------~~~~~~~lil~Pt~ 117 (333)
+.|+|...+..+.+ |+ -.+++||.|.||+..+..-+-..+.... ....|-..++.|..
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK 83 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc
Confidence 56777777777664 43 4999999999999544433222222211 11246677888853
Q ss_pred ---HHHHHHHHHHHHHhc----cCCceEEEEECCcchHHH-----HHHhhC---CCCEE-EEC-chHHHHHHHhc
Q psy18032 118 ---ELALQTFKFVKELGK----FTKLQSTCLLGGDSMDNQ-----FARLHA---SPDIV-VAT-PGRFLHIVVEM 175 (333)
Q Consensus 118 ---~L~~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~-----~~~l~~---~~~Il-I~T-P~rll~~l~~~ 175 (333)
..-.++.+.+.++.. ..+.+|+.+......... .+.+.+ +..++ +++ |++++.-+.++
T Consensus 84 ~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 84 EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 233333344444322 235788888776654332 233333 23344 433 57888777654
No 480
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=77.89 E-value=1.7 Score=35.86 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.9
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
|+-++++|++|||||...-
T Consensus 2 ~~~i~l~G~~gsGKst~a~ 20 (175)
T cd00227 2 GRIIILNGGSSAGKSSIAR 20 (175)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5678999999999997544
No 481
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=77.87 E-value=1.9 Score=34.18 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=11.6
Q ss_pred EEEECCCCcHHHH
Q psy18032 77 VVAMARTGSGKTA 89 (333)
Q Consensus 77 ~l~~a~TGsGKT~ 89 (333)
+++.||||||||.
T Consensus 2 i~i~GpsGsGKst 14 (137)
T cd00071 2 IVLSGPSGVGKST 14 (137)
T ss_pred EEEECCCCCCHHH
Confidence 5789999999996
No 482
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=77.79 E-value=3.3 Score=39.37 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.4
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+++++.||||+|||..+-
T Consensus 48 ~~ILLiGppG~GKT~lAr 65 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIAR 65 (441)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 689999999999996444
No 483
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=77.77 E-value=62 Score=30.30 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=31.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.+.+.+.|+.|.|||+. +-++-.... .+++.+ ++..+.+.++.+.+.++.
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp--~~~k~R----~HFh~Fm~~vh~~l~~~~ 111 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLP--IKRKRR----VHFHEFMLDVHSRLHQLR 111 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCC--cccccc----ccccHHHHHHHHHHHHHh
Confidence 46799999999999962 222222111 111212 256688889888888854
No 484
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=77.54 E-value=1.7 Score=40.28 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.++.++.|.| +++.|+||||||...
T Consensus 66 ~v~~~~~G~n~ti~aYGqTGSGKTyTm 92 (337)
T cd01373 66 LVEDCLSGYNGSIFAYGQTGSGKTYTM 92 (337)
T ss_pred HHHHHhCCCceeEEEeCCCCCCceEEe
Confidence 4555678887 889999999999543
No 485
>PHA02653 RNA helicase NPH-II; Provisional
Probab=77.45 E-value=6.8 Score=39.81 Aligned_cols=73 Identities=8% Similarity=0.198 Sum_probs=53.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH-HHHh-hC-CCCEEEECchHHHHHHHhccccccCch
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ-FARL-HA-SPDIVVATPGRFLHIVVEMELKLSSIQ 183 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~l-~~-~~~IlI~TP~rll~~l~~~~~~~~~l~ 183 (333)
+..+||.+|+++-+....+.+++.. .++.+..++|+.+..++ .+.. .+ ...|||+| +..+. .+++.++.
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~--~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVAT-----dIAER-GIDIp~V~ 466 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRL--PIYDFYIIHGKVPNIDEILEKVYSSKNPSIIIST-----PYLES-SVTIRNAT 466 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhc--CCceEEeccCCcCHHHHHHHHHhccCceeEEecc-----Chhhc-cccccCee
Confidence 4589999999999988888887642 36889999999876543 2444 23 47899999 45444 47788888
Q ss_pred hhHH
Q psy18032 184 YTFK 187 (333)
Q Consensus 184 ~lV~ 187 (333)
++|.
T Consensus 467 ~VID 470 (675)
T PHA02653 467 HVYD 470 (675)
T ss_pred EEEE
Confidence 8773
No 486
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=77.43 E-value=1.6 Score=40.76 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+++.++.|.| +++.|+||||||...
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm 106 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTM 106 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEe
Confidence 3455678887 889999999999643
No 487
>PRK08118 topology modulation protein; Reviewed
Probab=77.10 E-value=1.7 Score=35.71 Aligned_cols=14 Identities=29% Similarity=0.665 Sum_probs=12.6
Q ss_pred cEEEECCCCcHHHH
Q psy18032 76 DVVAMARTGSGKTA 89 (333)
Q Consensus 76 d~l~~a~TGsGKT~ 89 (333)
-++++||+|||||.
T Consensus 3 rI~I~G~~GsGKST 16 (167)
T PRK08118 3 KIILIGSGGSGKST 16 (167)
T ss_pred EEEEECCCCCCHHH
Confidence 47999999999995
No 488
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=77.02 E-value=2.7 Score=36.85 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=15.6
Q ss_pred EECCCCcHHHHHHHHHHHHHhhh
Q psy18032 79 AMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 79 ~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
|.||.|||||. |+-.+-+.+..
T Consensus 1 ViGpaGSGKTT-~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTT-FCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHH-HHHHHHHHHTT
T ss_pred CCCCCCCCHHH-HHHHHHHHHHh
Confidence 57999999994 66666666544
No 489
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=76.99 E-value=2.6 Score=39.15 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=18.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
.++++.||+|+|||.+. -.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999654 33444443
No 490
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=76.91 E-value=14 Score=27.94 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=41.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH---hhC-CCCEEEECc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHA-SPDIVVATP 165 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~-~~~IlI~TP 165 (333)
+.++||.+++..-+.++.+.+.. .+..+..++|+.+..+.... +.+ ...|+++|.
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~ 86 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD 86 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 56899999999999999988887 46778888888765444333 233 367999884
No 491
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=76.83 E-value=5.1 Score=32.49 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=20.4
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
+.++|++|||||.. +-.++..+.. .|.++.++-+.
T Consensus 2 i~i~G~~gsGKTtl-~~~l~~~l~~----~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTL-IERLVKALKA----RGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHHh----cCCeEEEEecc
Confidence 45789999999952 2223333322 25566666554
No 492
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=76.65 E-value=1.8 Score=39.30 Aligned_cols=15 Identities=47% Similarity=0.461 Sum_probs=12.8
Q ss_pred EEEECCCCcHHHHHH
Q psy18032 77 VVAMARTGSGKTACF 91 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~ 91 (333)
++++|||+||||...
T Consensus 6 i~I~GPTAsGKT~la 20 (308)
T COG0324 6 IVIAGPTASGKTALA 20 (308)
T ss_pred EEEECCCCcCHHHHH
Confidence 789999999999533
No 493
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=76.64 E-value=7.8 Score=37.44 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=29.0
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
.+++.|++|+|||... -++.+.+... ..+.+++++.+ .++..+....+
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~--~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESN--FSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH-HHHHHHHHHHH
Confidence 4899999999999433 3444444431 12456666554 56666655433
No 494
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=76.49 E-value=1.7 Score=40.16 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+++.++.|.| +++.|+||||||...
T Consensus 72 ~v~~~~~G~n~~i~ayG~tgSGKTyTm 98 (334)
T cd01375 72 VVDSALDGYNGTIFAYGQTGAGKTFTM 98 (334)
T ss_pred HHHHHhCCCccceeeecCCCCCCeEEc
Confidence 4556778877 899999999999543
No 495
>KOG0729|consensus
Probab=76.43 E-value=3.4 Score=36.63 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=43.3
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceE
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRA 110 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 110 (333)
+.++.-++.+.|=-.+-++.+.+- .+.|--.-.+-... +---+.+++-+|+|+|||+|+-..+ ++ ..-+
T Consensus 169 eekpdvty~dvggckeqieklrev-ve~pll~perfv~lgidppkgvllygppgtgktl~arava-nr--------tdac 238 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREV-VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVA-NR--------TDAC 238 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHH-HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHh-cc--------cCce
Confidence 446666778877444444444432 11111111111111 1113679999999999999875321 11 2245
Q ss_pred EEEcccHHHHHHH
Q psy18032 111 LILSPTRELALQT 123 (333)
Q Consensus 111 lil~Pt~~L~~q~ 123 (333)
.|=+=-.||++..
T Consensus 239 firvigselvqky 251 (435)
T KOG0729|consen 239 FIRVIGSELVQKY 251 (435)
T ss_pred EEeehhHHHHHHH
Confidence 5656666777654
No 496
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=76.34 E-value=3 Score=38.38 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=22.3
Q ss_pred HHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 63 IQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 63 ~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.=..++-+++.|..+++.+|+|+|||...
T Consensus 32 ~~~~~l~a~~~~~~vll~G~PG~gKT~la 60 (329)
T COG0714 32 VIELALLALLAGGHVLLEGPPGVGKTLLA 60 (329)
T ss_pred HHHHHHHHHHcCCCEEEECCCCccHHHHH
Confidence 33344556778999999999999999633
No 497
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=76.33 E-value=3.7 Score=35.24 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=26.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcccH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTR 117 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~Pt~ 117 (333)
|+=+.+.||+|+|||...+.-+........ ...+..++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 456899999999999755544443332210 00125677777643
No 498
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=76.25 E-value=4.1 Score=37.89 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.4
Q ss_pred CcEEEECCCCcHHHHH
Q psy18032 75 RDVVAMARTGSGKTAC 90 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~ 90 (333)
+=+++.||+|+|||..
T Consensus 79 ~il~L~GPPGsGKStl 94 (361)
T smart00763 79 QILYLLGPVGGGKSSL 94 (361)
T ss_pred cEEEEECCCCCCHHHH
Confidence 3489999999999953
No 499
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.22 E-value=1.9 Score=39.55 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.9
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+|+|..||||-|||.++-
T Consensus 51 KNILMIGpTGVGKTEIAR 68 (444)
T COG1220 51 KNILMIGPTGVGKTEIAR 68 (444)
T ss_pred cceEEECCCCCcHHHHHH
Confidence 799999999999998553
No 500
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=76.19 E-value=15 Score=35.90 Aligned_cols=97 Identities=15% Similarity=0.287 Sum_probs=70.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+-++||.+=|+-+|.+..+-+.+ .|+++..++++.+.-++.+.+. . ..++|||- ++++.+ +++..+
T Consensus 446 ~eRvLVTtLTKkmAEdLT~Yl~e----~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLREG-LDiPEV 515 (663)
T COG0556 446 NERVLVTTLTKKMAEDLTEYLKE----LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG-LDLPEV 515 (663)
T ss_pred CCeEEEEeehHHHHHHHHHHHHh----cCceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhhcc-CCCcce
Confidence 56999999999999998777776 7999999999998766655544 3 48999997 677665 677777
Q ss_pred hhhHH--------------HHHHHhhcc-ccceeeeecCCChHHHH
Q psy18032 183 QYTFK--------------FVKELGKFT-KLQSTCLLGGDSMDNQF 213 (333)
Q Consensus 183 ~~lV~--------------~i~~l~~~~-~~~~~~l~~sAT~~~~v 213 (333)
.++.+ .|..+++.. +.+-.+++....+++.+
T Consensus 516 sLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM 561 (663)
T COG0556 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSM 561 (663)
T ss_pred eEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEchhhhHHH
Confidence 77775 344444432 24556667666665443
Done!