Query psy18032
Match_columns 333
No_of_seqs 261 out of 2611
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 20:44:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 9.5E-46 3.3E-50 352.0 20.7 291 31-321 50-406 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1E-41 3.5E-46 321.8 19.5 281 31-311 9-368 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 5E-41 1.7E-45 316.7 19.4 280 30-311 30-368 (410)
4 3eiq_A Eukaryotic initiation f 100.0 9.1E-39 3.1E-43 301.2 20.8 277 33-311 36-372 (414)
5 1s2m_A Putative ATP-dependent 100.0 5.9E-39 2E-43 301.4 19.3 276 34-311 18-350 (400)
6 3fmp_B ATP-dependent RNA helic 100.0 3.1E-39 1.1E-43 310.8 16.8 281 35-320 90-444 (479)
7 1fuu_A Yeast initiation factor 100.0 2.1E-38 7.3E-43 296.6 18.9 277 32-311 16-351 (394)
8 3fht_A ATP-dependent RNA helic 100.0 3.7E-38 1.3E-42 296.7 17.8 274 33-311 21-364 (412)
9 3sqw_A ATP-dependent RNA helic 100.0 1.7E-38 5.9E-43 312.5 15.6 277 35-311 15-383 (579)
10 1xti_A Probable ATP-dependent 100.0 7E-38 2.4E-42 293.0 18.9 274 36-311 7-342 (391)
11 3pey_A ATP-dependent RNA helic 100.0 1E-37 3.6E-42 291.7 18.2 272 34-311 2-341 (395)
12 3i5x_A ATP-dependent RNA helic 100.0 3.5E-38 1.2E-42 309.3 14.3 284 37-320 68-447 (563)
13 1hv8_A Putative ATP-dependent 100.0 3.9E-37 1.3E-41 285.0 17.9 272 36-311 5-330 (367)
14 2z0m_A 337AA long hypothetical 100.0 1.9E-35 6.4E-40 270.8 16.9 257 44-311 1-308 (337)
15 1oyw_A RECQ helicase, ATP-depe 100.0 1.6E-35 5.4E-40 287.4 14.3 263 37-311 2-328 (523)
16 3oiy_A Reverse gyrase helicase 100.0 1.2E-35 4E-40 280.7 12.5 255 46-311 8-346 (414)
17 2v1x_A ATP-dependent DNA helic 100.0 1.2E-34 4.3E-39 284.3 16.0 261 38-311 22-359 (591)
18 3fe2_A Probable ATP-dependent 100.0 1.9E-33 6.4E-38 246.8 20.5 189 29-217 21-225 (242)
19 3fmo_B ATP-dependent RNA helic 100.0 1E-32 3.5E-37 249.6 19.1 186 34-224 89-296 (300)
20 4ddu_A Reverse gyrase; topoiso 100.0 5.2E-34 1.8E-38 296.4 10.2 234 48-292 67-366 (1104)
21 1q0u_A Bstdead; DEAD protein, 100.0 1.9E-32 6.4E-37 236.8 16.5 189 36-226 3-212 (219)
22 3fho_A ATP-dependent RNA helic 100.0 5E-34 1.7E-38 276.4 7.2 270 36-311 118-455 (508)
23 3ber_A Probable ATP-dependent 100.0 7.2E-32 2.5E-36 237.8 19.7 185 31-217 37-235 (249)
24 3iuy_A Probable ATP-dependent 100.0 4.4E-32 1.5E-36 235.8 18.0 188 29-217 11-216 (228)
25 1vec_A ATP-dependent RNA helic 100.0 1.1E-31 3.7E-36 229.5 19.2 180 36-217 2-195 (206)
26 3bor_A Human initiation factor 100.0 6.5E-32 2.2E-36 236.3 18.0 185 31-217 24-222 (237)
27 3ly5_A ATP-dependent RNA helic 100.0 1.3E-31 4.4E-36 237.9 18.6 184 34-217 49-250 (262)
28 1wrb_A DJVLGB; RNA helicase, D 100.0 6.3E-32 2.2E-36 238.6 16.1 183 35-217 21-227 (253)
29 2oxc_A Probable ATP-dependent 100.0 2.6E-31 8.9E-36 231.4 19.6 186 29-217 16-216 (230)
30 1tf5_A Preprotein translocase 100.0 1.1E-32 3.9E-37 272.8 12.0 124 54-187 79-209 (844)
31 2zj8_A DNA helicase, putative 100.0 2.7E-32 9.1E-37 274.8 12.3 264 37-311 1-370 (720)
32 2va8_A SSO2462, SKI2-type heli 100.0 8.2E-32 2.8E-36 271.1 14.4 267 35-311 6-391 (715)
33 2p6r_A Afuhel308 helicase; pro 100.0 7.6E-33 2.6E-37 278.0 6.6 263 37-311 1-371 (702)
34 1qde_A EIF4A, translation init 100.0 7.2E-31 2.4E-35 227.4 18.0 183 32-217 9-204 (224)
35 3l9o_A ATP-dependent RNA helic 100.0 1.5E-32 5.3E-37 285.5 7.7 269 36-320 161-593 (1108)
36 2pl3_A Probable ATP-dependent 100.0 2.9E-30 9.8E-35 225.5 20.7 184 33-217 21-220 (236)
37 2ykg_A Probable ATP-dependent 100.0 1.6E-31 5.5E-36 268.2 13.9 160 49-210 3-184 (696)
38 2gxq_A Heat resistant RNA depe 100.0 2.9E-30 9.8E-35 220.7 19.4 179 37-217 1-193 (207)
39 1t6n_A Probable ATP-dependent 100.0 3.3E-30 1.1E-34 222.6 18.3 182 33-216 10-207 (220)
40 1gku_B Reverse gyrase, TOP-RG; 100.0 2.9E-32 1E-36 283.1 6.4 229 50-292 48-331 (1054)
41 3tbk_A RIG-I helicase domain; 100.0 3.5E-31 1.2E-35 258.2 13.7 149 59-209 4-174 (555)
42 3dkp_A Probable ATP-dependent 100.0 1.6E-30 5.5E-35 228.4 15.3 187 30-217 18-228 (245)
43 4a2p_A RIG-I, retinoic acid in 100.0 3.7E-31 1.3E-35 258.3 10.5 152 56-209 4-176 (556)
44 4a2q_A RIG-I, retinoic acid in 100.0 4.3E-30 1.5E-34 261.3 13.9 155 54-210 243-418 (797)
45 2xgj_A ATP-dependent RNA helic 100.0 2.5E-29 8.6E-34 259.3 15.5 143 52-211 80-235 (1010)
46 2fsf_A Preprotein translocase 100.0 2.5E-30 8.6E-35 255.5 7.0 123 55-187 71-200 (853)
47 1gm5_A RECG; helicase, replica 100.0 1.7E-29 5.9E-34 253.4 12.5 254 46-312 356-683 (780)
48 1nkt_A Preprotein translocase 100.0 5.4E-29 1.9E-33 246.4 12.5 124 54-187 107-237 (922)
49 4a2w_A RIG-I, retinoic acid in 100.0 4.1E-29 1.4E-33 257.3 11.5 164 44-209 233-417 (936)
50 4gl2_A Interferon-induced heli 100.0 3.6E-30 1.2E-34 258.5 3.4 128 59-187 7-142 (699)
51 4a4z_A Antiviral helicase SKI2 100.0 1.6E-28 5.5E-33 253.2 13.8 143 54-211 35-190 (997)
52 4f92_B U5 small nuclear ribonu 99.9 4.8E-28 1.6E-32 260.1 13.5 262 44-311 911-1291(1724)
53 2eyq_A TRCF, transcription-rep 99.9 2.2E-27 7.5E-32 248.1 15.8 260 41-311 585-907 (1151)
54 4f92_B U5 small nuclear ribonu 99.9 8.3E-28 2.8E-32 258.2 11.5 251 56-311 76-456 (1724)
55 2jlq_A Serine protease subunit 99.9 4.1E-29 1.4E-33 238.4 1.0 218 56-292 1-242 (451)
56 2wv9_A Flavivirin protease NS2 99.9 2.5E-30 8.7E-35 256.3 -13.4 236 51-311 202-517 (673)
57 2whx_A Serine protease/ntpase/ 99.9 1.8E-29 6.1E-34 248.6 -7.2 237 38-292 150-409 (618)
58 3o8b_A HCV NS3 protease/helica 99.9 5.6E-28 1.9E-32 236.9 -1.4 233 60-316 218-506 (666)
59 1yks_A Genome polyprotein [con 99.9 1.8E-28 6.1E-33 233.1 -8.3 216 70-312 4-284 (440)
60 2xau_A PRE-mRNA-splicing facto 99.9 2.3E-25 8E-30 224.4 11.3 274 34-318 69-439 (773)
61 2oca_A DAR protein, ATP-depend 99.9 1.9E-26 6.4E-31 223.4 2.4 242 59-311 113-440 (510)
62 1wp9_A ATP-dependent RNA helic 99.9 8.2E-25 2.8E-29 208.8 13.6 144 59-210 9-167 (494)
63 2z83_A Helicase/nucleoside tri 99.9 1.2E-26 4.1E-31 221.8 -1.0 225 69-311 16-297 (459)
64 2v6i_A RNA helicase; membrane, 99.9 1.4E-25 4.7E-30 212.7 2.4 222 73-311 1-275 (431)
65 2fwr_A DNA repair protein RAD2 99.9 8.8E-24 3E-28 202.6 6.4 224 59-311 93-436 (472)
66 3rc3_A ATP-dependent RNA helic 99.8 2.6E-21 8.9E-26 191.5 9.4 214 63-292 144-380 (677)
67 3h1t_A Type I site-specific re 99.8 2.2E-21 7.5E-26 191.1 3.7 250 59-322 178-557 (590)
68 3b6e_A Interferon-induced heli 99.8 4.8E-20 1.6E-24 157.8 10.5 132 55-187 29-168 (216)
69 2ipc_A Preprotein translocase 99.8 7.4E-19 2.5E-23 174.0 11.9 124 54-187 75-208 (997)
70 3llm_A ATP-dependent RNA helic 99.8 3E-18 1E-22 149.2 11.4 161 45-213 47-222 (235)
71 3jux_A Protein translocase sub 99.7 5.8E-18 2E-22 164.8 12.4 82 54-143 71-152 (822)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 5.5E-19 1.9E-23 181.8 5.1 155 46-210 251-439 (1038)
73 1rif_A DAR protein, DNA helica 99.7 1.4E-17 4.9E-22 148.8 10.0 143 59-211 113-264 (282)
74 3dmq_A RNA polymerase-associat 99.7 3.7E-18 1.3E-22 176.3 6.3 144 59-209 153-316 (968)
75 1z63_A Helicase of the SNF2/RA 99.6 1.1E-15 3.7E-20 147.3 12.0 103 59-172 37-143 (500)
76 2fz4_A DNA repair protein RAD2 99.6 1.3E-14 4.5E-19 126.3 11.4 104 59-186 93-197 (237)
77 3crv_A XPD/RAD3 related DNA he 99.5 5.2E-14 1.8E-18 137.2 10.3 131 56-197 1-187 (551)
78 1c4o_A DNA nucleotide excision 99.4 2.5E-13 8.4E-18 134.9 7.3 75 245-319 442-547 (664)
79 3mwy_W Chromo domain-containin 99.4 2.4E-12 8.3E-17 130.7 13.0 108 59-171 236-359 (800)
80 2vl7_A XPD; helicase, unknown 99.3 8.5E-13 2.9E-17 128.3 7.0 76 55-143 4-83 (540)
81 1z3i_X Similar to RAD54-like; 99.3 7.4E-12 2.5E-16 124.1 12.9 124 59-186 55-197 (644)
82 2d7d_A Uvrabc system protein B 99.3 1E-12 3.5E-17 130.4 3.6 77 245-321 448-555 (661)
83 4a15_A XPD helicase, ATP-depen 99.2 1.7E-11 5.8E-16 120.8 7.9 84 59-146 3-90 (620)
84 1t5i_A C_terminal domain of A 99.0 2.7E-11 9.3E-16 99.9 -1.9 94 226-319 2-135 (172)
85 2hjv_A ATP-dependent RNA helic 99.0 7.5E-11 2.6E-15 96.3 0.3 94 226-319 6-139 (163)
86 2rb4_A ATP-dependent RNA helic 98.9 1.2E-10 4.2E-15 96.1 -0.2 86 226-311 4-132 (175)
87 2p6n_A ATP-dependent RNA helic 98.9 1.2E-10 3.9E-15 97.8 -1.1 95 226-320 26-159 (191)
88 2jgn_A DBX, DDX3, ATP-dependen 98.8 2.3E-10 7.8E-15 95.5 -0.7 86 226-311 16-138 (185)
89 2yjt_D ATP-dependent RNA helic 98.3 3.5E-10 1.2E-14 92.9 0.0 68 244-311 32-122 (170)
90 1fuk_A Eukaryotic initiation f 98.8 4E-10 1.4E-14 92.1 0.3 67 245-311 33-122 (165)
91 3eaq_A Heat resistant RNA depe 98.8 2.7E-10 9.3E-15 97.1 -2.1 67 245-311 34-123 (212)
92 3i32_A Heat resistant RNA depe 98.7 7.2E-10 2.5E-14 99.4 -2.4 67 245-311 31-120 (300)
93 1w36_D RECD, exodeoxyribonucle 98.4 2.8E-07 9.5E-12 90.6 6.0 73 61-136 151-225 (608)
94 4b3f_X DNA-binding protein smu 97.6 0.00016 5.5E-09 71.5 9.1 66 59-129 189-255 (646)
95 1z5z_A Helicase of the SNF2/RA 97.4 4.6E-05 1.6E-09 67.0 2.1 71 245-315 115-212 (271)
96 2gk6_A Regulator of nonsense t 97.2 0.001 3.5E-08 65.4 9.3 69 58-130 179-247 (624)
97 2xzl_A ATP-dependent helicase 97.2 0.0012 4.1E-08 66.7 9.4 69 58-130 359-427 (802)
98 3upu_A ATP-dependent DNA helic 97.0 0.0018 6.2E-08 61.2 8.3 71 53-127 19-94 (459)
99 2wjy_A Regulator of nonsense t 96.9 0.0028 9.5E-08 64.0 9.5 67 59-129 356-422 (800)
100 3e1s_A Exodeoxyribonuclease V, 96.8 0.0035 1.2E-07 60.9 8.7 62 60-126 190-251 (574)
101 3lfu_A DNA helicase II; SF1 he 96.8 0.003 1E-07 62.1 8.2 71 58-131 8-78 (647)
102 1uaa_A REP helicase, protein ( 96.4 0.0052 1.8E-07 60.9 7.5 71 59-132 2-72 (673)
103 3u4q_A ATP-dependent helicase/ 96.1 0.0096 3.3E-07 63.1 7.7 69 59-129 10-79 (1232)
104 1pjr_A PCRA; DNA repair, DNA r 96.1 0.015 5.1E-07 58.2 8.6 71 58-131 10-80 (724)
105 3fmo_B ATP-dependent RNA helic 95.8 0.0044 1.5E-07 55.1 3.0 37 295-331 123-161 (300)
106 3cpe_A Terminase, DNA packagin 95.4 0.061 2.1E-06 52.4 9.7 71 59-132 163-233 (592)
107 2o0j_A Terminase, DNA packagin 95.3 0.066 2.2E-06 49.1 9.0 72 59-133 163-234 (385)
108 3ec2_A DNA replication protein 95.0 0.059 2E-06 43.5 7.0 62 61-127 16-86 (180)
109 2p6n_A ATP-dependent RNA helic 93.8 0.22 7.6E-06 40.7 8.1 70 107-186 54-127 (191)
110 3iuy_A Probable ATP-dependent 93.8 0.022 7.7E-07 47.9 2.0 33 296-328 52-84 (228)
111 3fe2_A Probable ATP-dependent 93.8 0.02 6.8E-07 48.8 1.6 34 295-328 60-93 (242)
112 3dkp_A Probable ATP-dependent 93.7 0.025 8.5E-07 48.2 2.1 33 296-328 61-93 (245)
113 2db3_A ATP-dependent RNA helic 93.7 0.022 7.5E-07 53.2 1.9 35 294-328 86-120 (434)
114 1vec_A ATP-dependent RNA helic 93.6 0.036 1.2E-06 45.7 2.8 33 296-328 35-67 (206)
115 3ly5_A ATP-dependent RNA helic 93.5 0.016 5.6E-07 50.1 0.6 34 295-328 85-118 (262)
116 4b4t_M 26S protease regulatory 93.5 0.032 1.1E-06 52.0 2.6 58 31-91 172-232 (434)
117 2oxc_A Probable ATP-dependent 93.4 0.039 1.3E-06 46.6 2.8 33 296-328 56-88 (230)
118 1qde_A EIF4A, translation init 93.4 0.041 1.4E-06 46.0 2.9 34 296-329 46-79 (224)
119 1q0u_A Bstdead; DEAD protein, 93.3 0.033 1.1E-06 46.6 2.1 34 295-328 35-68 (219)
120 2pl3_A Probable ATP-dependent 93.2 0.029 9.9E-07 47.4 1.7 34 295-328 56-89 (236)
121 3ber_A Probable ATP-dependent 93.1 0.035 1.2E-06 47.6 2.0 34 295-328 74-107 (249)
122 1wrb_A DJVLGB; RNA helicase, D 93.0 0.034 1.2E-06 47.6 1.9 35 294-328 53-87 (253)
123 3bor_A Human initiation factor 92.9 0.035 1.2E-06 47.1 1.8 33 296-328 62-94 (237)
124 2rb4_A ATP-dependent RNA helic 92.8 0.5 1.7E-05 37.7 8.6 70 107-186 34-107 (175)
125 2hjv_A ATP-dependent RNA helic 92.6 0.49 1.7E-05 37.3 8.2 70 107-186 35-108 (163)
126 3fmp_B ATP-dependent RNA helic 92.3 0.068 2.3E-06 50.3 3.0 29 302-330 132-160 (479)
127 1fuk_A Eukaryotic initiation f 92.0 0.66 2.3E-05 36.6 8.2 70 107-186 30-103 (165)
128 2gxq_A Heat resistant RNA depe 91.8 0.067 2.3E-06 44.0 2.0 33 296-328 33-65 (207)
129 1t5i_A C_terminal domain of A 91.7 0.83 2.8E-05 36.4 8.6 70 107-186 31-104 (172)
130 2i4i_A ATP-dependent RNA helic 91.6 0.68 2.3E-05 42.2 9.0 70 107-186 276-349 (417)
131 1t6n_A Probable ATP-dependent 91.6 0.095 3.2E-06 43.6 2.9 33 296-328 46-78 (220)
132 3n70_A Transport activator; si 91.6 0.15 5.1E-06 39.6 3.8 21 72-92 22-42 (145)
133 3co5_A Putative two-component 91.4 0.13 4.4E-06 39.9 3.3 20 71-90 24-43 (143)
134 4b4t_J 26S protease regulatory 91.2 0.067 2.3E-06 49.3 1.6 57 33-92 141-200 (405)
135 3vkw_A Replicase large subunit 90.9 0.2 6.7E-06 46.8 4.4 43 77-129 164-206 (446)
136 3h4m_A Proteasome-activating n 90.5 0.096 3.3E-06 45.5 1.9 58 33-92 10-69 (285)
137 3i5x_A ATP-dependent RNA helic 90.5 1.3 4.4E-05 42.4 10.1 75 106-187 338-416 (563)
138 3eaq_A Heat resistant RNA depe 90.5 0.81 2.8E-05 37.9 7.6 70 107-186 31-104 (212)
139 4b4t_K 26S protease regulatory 90.3 0.11 3.9E-06 48.2 2.3 58 32-92 164-224 (428)
140 2jgn_A DBX, DDX3, ATP-dependen 90.1 0.67 2.3E-05 37.5 6.6 87 84-186 29-119 (185)
141 2w58_A DNAI, primosome compone 89.9 0.71 2.4E-05 37.6 6.7 18 75-92 55-72 (202)
142 2whx_A Serine protease/ntpase/ 89.9 0.11 3.8E-06 50.8 1.9 35 294-328 179-213 (618)
143 1xwi_A SKD1 protein; VPS4B, AA 89.8 0.32 1.1E-05 43.3 4.8 55 34-92 6-63 (322)
144 3hjh_A Transcription-repair-co 89.5 2.4 8.1E-05 40.0 10.7 51 73-131 13-63 (483)
145 2qz4_A Paraplegin; AAA+, SPG7, 89.5 0.16 5.4E-06 43.4 2.4 54 36-92 2-57 (262)
146 4b4t_I 26S protease regulatory 89.4 0.2 6.8E-06 46.5 3.1 59 31-92 173-234 (437)
147 1e9r_A Conjugal transfer prote 89.4 0.39 1.3E-05 44.6 5.2 44 73-121 52-95 (437)
148 3sqw_A ATP-dependent RNA helic 89.3 1.7 5.8E-05 41.8 9.9 83 107-196 288-383 (579)
149 3cf0_A Transitional endoplasmi 89.3 0.16 5.4E-06 44.8 2.3 58 34-92 9-67 (301)
150 4b4t_H 26S protease regulatory 89.3 0.2 6.9E-06 46.9 3.1 57 33-92 202-261 (467)
151 4b4t_L 26S protease subunit RP 89.1 0.17 5.8E-06 47.2 2.5 57 33-92 174-233 (437)
152 2dr3_A UPF0273 protein PH0284; 89.0 0.43 1.5E-05 40.1 4.8 51 73-129 22-72 (247)
153 3dm5_A SRP54, signal recogniti 88.7 1.6 5.5E-05 40.6 8.7 85 76-168 102-194 (443)
154 2kjq_A DNAA-related protein; s 88.6 0.89 3.1E-05 35.4 6.1 18 73-90 35-52 (149)
155 3fht_A ATP-dependent RNA helic 88.5 0.7 2.4E-05 41.9 6.2 70 107-186 266-339 (412)
156 2qgz_A Helicase loader, putati 88.4 0.74 2.5E-05 40.7 6.1 19 74-92 152-170 (308)
157 2b8t_A Thymidine kinase; deoxy 88.4 0.48 1.6E-05 39.9 4.6 40 74-118 12-51 (223)
158 3kl4_A SRP54, signal recogniti 87.8 1.3 4.4E-05 41.2 7.5 85 76-168 99-191 (433)
159 2orw_A Thymidine kinase; TMTK, 87.6 0.65 2.2E-05 37.6 4.8 39 74-117 3-41 (184)
160 1lv7_A FTSH; alpha/beta domain 87.6 0.15 5.3E-06 43.5 1.1 56 34-92 6-63 (257)
161 3hws_A ATP-dependent CLP prote 87.4 0.74 2.5E-05 41.5 5.6 20 73-92 50-69 (363)
162 3eie_A Vacuolar protein sortin 87.4 0.12 4E-06 46.1 0.2 53 34-92 12-69 (322)
163 1xx6_A Thymidine kinase; NESG, 87.3 0.63 2.2E-05 38.1 4.6 39 74-117 8-46 (191)
164 3eiq_A Eukaryotic initiation f 87.0 0.27 9.1E-06 44.9 2.4 31 298-328 74-104 (414)
165 3b9p_A CG5977-PA, isoform A; A 86.3 1.2 4.2E-05 38.6 6.2 55 35-92 16-72 (297)
166 3llm_A ATP-dependent RNA helic 86.2 0.24 8.3E-06 41.7 1.5 34 295-328 70-103 (235)
167 2yjt_D ATP-dependent RNA helic 86.2 0.14 4.9E-06 40.8 0.0 71 107-187 30-104 (170)
168 3i32_A Heat resistant RNA depe 85.8 2.2 7.6E-05 37.5 7.6 71 107-187 28-102 (300)
169 2zts_A Putative uncharacterize 85.7 0.62 2.1E-05 39.1 3.8 51 74-129 30-80 (251)
170 2oap_1 GSPE-2, type II secreti 85.5 0.96 3.3E-05 43.0 5.4 38 50-89 237-275 (511)
171 2r44_A Uncharacterized protein 85.5 0.55 1.9E-05 41.7 3.5 28 65-92 37-64 (331)
172 1fuu_A Yeast initiation factor 85.4 0.29 9.8E-06 44.3 1.7 33 296-328 53-85 (394)
173 3te6_A Regulatory protein SIR3 85.3 0.39 1.3E-05 42.8 2.4 26 74-100 45-70 (318)
174 3nbx_X ATPase RAVA; AAA+ ATPas 85.2 1.1 3.7E-05 42.5 5.6 43 48-91 16-58 (500)
175 1ixz_A ATP-dependent metallopr 85.2 0.21 7E-06 42.6 0.5 53 34-91 10-66 (254)
176 2x8a_A Nuclear valosin-contain 85.1 0.15 5.1E-06 44.4 -0.4 56 34-92 4-62 (274)
177 1jbk_A CLPB protein; beta barr 85.0 0.75 2.6E-05 36.5 3.9 18 75-92 44-61 (195)
178 2ffh_A Protein (FFH); SRP54, s 85.0 3.1 0.00011 38.5 8.4 85 76-168 100-192 (425)
179 4ag6_A VIRB4 ATPase, type IV s 84.9 0.77 2.6E-05 41.9 4.4 42 73-119 34-75 (392)
180 3bos_A Putative DNA replicatio 84.7 1 3.5E-05 37.3 4.8 20 73-92 51-70 (242)
181 1tue_A Replication protein E1; 84.7 1 3.5E-05 37.4 4.5 50 47-99 29-82 (212)
182 4akg_A Glutathione S-transfera 84.7 1.7 5.7E-05 49.5 7.5 49 44-93 890-942 (2695)
183 3nwn_A Kinesin-like protein KI 84.5 0.6 2.1E-05 42.2 3.3 26 66-91 95-122 (359)
184 3pfi_A Holliday junction ATP-d 84.2 1.5 5.2E-05 38.8 5.9 43 38-92 27-73 (338)
185 1bg2_A Kinesin; motor protein, 84.1 0.72 2.5E-05 41.2 3.6 25 67-91 69-95 (325)
186 1ofh_A ATP-dependent HSL prote 84.1 2 6.8E-05 37.2 6.6 19 74-92 50-68 (310)
187 3oiy_A Reverse gyrase helicase 84.1 0.34 1.2E-05 44.5 1.5 29 300-328 35-63 (414)
188 1u0j_A DNA replication protein 84.0 1.9 6.5E-05 37.2 6.1 43 47-92 74-122 (267)
189 2p65_A Hypothetical protein PF 83.8 0.59 2E-05 37.0 2.8 19 74-92 43-61 (187)
190 2bjv_A PSP operon transcriptio 83.7 0.83 2.8E-05 39.0 3.8 19 73-91 28-46 (265)
191 3fho_A ATP-dependent RNA helic 83.6 0.6 2E-05 44.3 3.1 35 295-329 150-186 (508)
192 3dc4_A Kinesin-like protein NO 83.4 0.71 2.4E-05 41.5 3.3 24 68-91 87-112 (344)
193 3uk6_A RUVB-like 2; hexameric 83.4 0.77 2.6E-05 41.2 3.6 48 33-92 37-88 (368)
194 1hv8_A Putative ATP-dependent 83.4 2.9 0.0001 36.9 7.5 71 106-186 237-311 (367)
195 1xti_A Probable ATP-dependent 83.2 3.2 0.00011 37.2 7.7 70 107-186 250-323 (391)
196 1p9r_A General secretion pathw 83.1 1.9 6.6E-05 39.8 6.2 26 64-89 155-182 (418)
197 1d2n_A N-ethylmaleimide-sensit 83.1 0.22 7.5E-06 43.0 -0.2 18 75-92 65-82 (272)
198 4a14_A Kinesin, kinesin-like p 82.9 0.86 2.9E-05 41.0 3.7 25 67-91 75-101 (344)
199 2w0m_A SSO2452; RECA, SSPF, un 82.8 1.4 4.8E-05 36.3 4.8 19 73-91 22-40 (235)
200 2vvg_A Kinesin-2; motor protei 82.8 0.87 3E-05 41.0 3.6 24 68-91 82-107 (350)
201 2h58_A Kinesin-like protein KI 82.7 0.89 3E-05 40.6 3.7 26 66-91 71-98 (330)
202 2y65_A Kinesin, kinesin heavy 82.7 0.87 3E-05 41.3 3.6 24 68-91 77-102 (365)
203 2c9o_A RUVB-like 1; hexameric 82.7 1.4 4.9E-05 41.1 5.3 49 32-92 29-81 (456)
204 2r62_A Cell division protease 82.7 0.19 6.5E-06 43.2 -0.8 53 35-92 6-62 (268)
205 1goj_A Kinesin, kinesin heavy 82.5 0.85 2.9E-05 41.2 3.5 24 68-91 73-98 (355)
206 2zfi_A Kinesin-like protein KI 82.5 0.9 3.1E-05 41.2 3.6 25 67-91 81-107 (366)
207 4etp_A Kinesin-like protein KA 82.4 0.94 3.2E-05 41.7 3.8 26 67-92 132-159 (403)
208 3b6u_A Kinesin-like protein KI 82.4 0.83 2.8E-05 41.5 3.3 25 67-91 93-119 (372)
209 3lre_A Kinesin-like protein KI 82.3 0.9 3.1E-05 41.1 3.5 25 67-91 97-123 (355)
210 2zan_A Vacuolar protein sortin 82.3 0.51 1.7E-05 44.1 1.9 55 34-92 128-185 (444)
211 1l8q_A Chromosomal replication 82.2 2.2 7.7E-05 37.5 6.1 19 74-92 37-55 (324)
212 2v6i_A RNA helicase; membrane, 82.0 2.3 7.7E-05 39.4 6.3 59 107-175 171-230 (431)
213 3t0q_A AGR253WP; kinesin, alph 82.0 0.9 3.1E-05 40.9 3.4 26 67-92 77-104 (349)
214 3gbj_A KIF13B protein; kinesin 82.0 0.89 3E-05 41.1 3.4 25 67-91 84-110 (354)
215 3vkg_A Dynein heavy chain, cyt 81.9 2.3 8E-05 49.0 7.3 48 44-92 873-924 (3245)
216 3jvv_A Twitching mobility prot 81.8 1.2 4.2E-05 40.2 4.3 17 73-89 122-138 (356)
217 2px0_A Flagellar biosynthesis 81.8 0.85 2.9E-05 40.1 3.2 19 74-92 105-123 (296)
218 1t5c_A CENP-E protein, centrom 81.8 0.9 3.1E-05 40.9 3.3 25 67-91 69-95 (349)
219 3pey_A ATP-dependent RNA helic 81.8 3.3 0.00011 37.0 7.2 70 107-186 243-316 (395)
220 2nr8_A Kinesin-like protein KI 81.8 0.9 3.1E-05 41.1 3.3 26 66-91 94-121 (358)
221 1v8k_A Kinesin-like protein KI 81.6 0.95 3.2E-05 41.7 3.5 26 67-92 146-173 (410)
222 2gza_A Type IV secretion syste 81.5 0.72 2.5E-05 41.7 2.7 19 71-89 172-190 (361)
223 2v1x_A ATP-dependent DNA helic 81.4 7.3 0.00025 37.6 9.9 71 107-187 267-341 (591)
224 1x88_A Kinesin-like protein KI 81.4 0.89 3.1E-05 41.1 3.2 25 67-91 80-106 (359)
225 3u06_A Protein claret segregat 81.3 0.95 3.2E-05 41.8 3.4 26 66-91 129-156 (412)
226 1yks_A Genome polyprotein [con 81.3 2.2 7.6E-05 39.6 6.0 68 107-186 177-245 (440)
227 3syl_A Protein CBBX; photosynt 81.3 0.62 2.1E-05 40.7 2.1 18 75-92 68-85 (309)
228 1iy2_A ATP-dependent metallopr 81.2 0.35 1.2E-05 41.8 0.4 52 35-91 35-90 (278)
229 1f9v_A Kinesin-like protein KA 81.2 0.94 3.2E-05 40.8 3.2 26 67-92 76-103 (347)
230 2heh_A KIF2C protein; kinesin, 81.2 1 3.5E-05 41.2 3.5 26 67-92 126-153 (387)
231 2wbe_C Bipolar kinesin KRP-130 81.1 0.95 3.3E-05 41.2 3.3 25 67-91 92-118 (373)
232 2zpa_A Uncharacterized protein 81.1 2.1 7.2E-05 42.0 5.9 61 59-127 175-237 (671)
233 3cob_A Kinesin heavy chain-lik 81.1 0.84 2.9E-05 41.5 2.9 25 67-91 71-97 (369)
234 1kgd_A CASK, peripheral plasma 81.0 0.72 2.5E-05 37.0 2.2 19 73-91 4-22 (180)
235 3b85_A Phosphate starvation-in 81.0 1.1 3.9E-05 37.0 3.5 35 57-91 5-39 (208)
236 2pt7_A CAG-ALFA; ATPase, prote 80.9 1.5 5.2E-05 39.1 4.5 19 71-89 168-186 (330)
237 3bfn_A Kinesin-like protein KI 80.8 0.96 3.3E-05 41.3 3.2 32 60-91 75-116 (388)
238 3vaa_A Shikimate kinase, SK; s 80.6 0.8 2.8E-05 37.3 2.4 21 72-92 23-43 (199)
239 2z0m_A 337AA long hypothetical 80.3 0.67 2.3E-05 40.7 2.0 25 301-325 31-55 (337)
240 1s2m_A Putative ATP-dependent 80.1 3.8 0.00013 36.9 7.1 70 107-186 258-331 (400)
241 2r2a_A Uncharacterized protein 80.1 1.1 3.7E-05 36.9 3.0 22 76-97 7-28 (199)
242 3bh0_A DNAB-like replicative h 80.0 2.9 9.9E-05 36.9 6.0 50 74-129 68-117 (315)
243 3iij_A Coilin-interacting nucl 79.9 0.63 2.1E-05 37.2 1.5 21 72-92 9-29 (180)
244 2owm_A Nckin3-434, related to 79.8 1.2 4.3E-05 41.4 3.7 25 67-91 128-154 (443)
245 3hr8_A Protein RECA; alpha and 79.7 4.2 0.00014 36.6 7.1 41 74-119 61-101 (356)
246 1oyw_A RECQ helicase, ATP-depe 79.5 4.3 0.00015 38.6 7.4 71 107-187 236-310 (523)
247 1ojl_A Transcriptional regulat 79.4 1.3 4.3E-05 39.0 3.4 20 73-92 24-43 (304)
248 2eyu_A Twitching motility prot 79.4 0.68 2.3E-05 39.9 1.6 20 71-90 22-41 (261)
249 1vma_A Cell division protein F 79.3 7 0.00024 34.3 8.2 17 76-92 106-122 (306)
250 2ce7_A Cell division protein F 79.3 1 3.4E-05 42.5 2.9 56 34-92 10-67 (476)
251 3trf_A Shikimate kinase, SK; a 79.0 0.94 3.2E-05 36.2 2.3 19 74-92 5-23 (185)
252 2j0s_A ATP-dependent RNA helic 79.0 4.5 0.00015 36.6 7.2 70 107-186 276-349 (410)
253 2rep_A Kinesin-like protein KI 79.0 1.1 3.8E-05 40.8 3.0 25 67-91 107-133 (376)
254 2j9r_A Thymidine kinase; TK1, 78.8 2.4 8.2E-05 35.3 4.7 39 75-118 29-67 (214)
255 2xau_A PRE-mRNA-splicing facto 78.8 3.8 0.00013 41.0 7.1 75 107-187 303-393 (773)
256 3exa_A TRNA delta(2)-isopenten 78.6 0.95 3.2E-05 40.2 2.3 17 76-92 5-21 (322)
257 3cmu_A Protein RECA, recombina 78.6 5 0.00017 44.4 8.3 50 68-122 1415-1470(2050)
258 3foz_A TRNA delta(2)-isopenten 78.6 0.95 3.3E-05 40.1 2.3 16 77-92 13-28 (316)
259 2ykg_A Probable ATP-dependent 78.4 0.77 2.6E-05 45.2 1.9 32 298-329 25-56 (696)
260 3a8t_A Adenylate isopentenyltr 78.4 0.88 3E-05 40.8 2.1 18 75-92 41-58 (339)
261 2chg_A Replication factor C sm 78.2 1.8 6.3E-05 35.0 3.9 17 75-91 39-55 (226)
262 1lvg_A Guanylate kinase, GMP k 78.2 1.1 3.6E-05 36.7 2.4 20 73-92 3-22 (198)
263 3u61_B DNA polymerase accessor 78.1 19 0.00066 31.2 10.9 71 37-130 23-96 (324)
264 1qhx_A CPT, protein (chloramph 78.0 1 3.5E-05 35.7 2.2 19 74-92 3-21 (178)
265 3b6e_A Interferon-induced heli 77.8 0.55 1.9E-05 38.4 0.5 28 300-327 47-74 (216)
266 2ius_A DNA translocase FTSK; n 77.4 3.1 0.00011 39.4 5.7 27 73-99 166-192 (512)
267 3lw7_A Adenylate kinase relate 77.4 1.1 3.6E-05 35.1 2.1 17 76-92 3-19 (179)
268 2cvh_A DNA repair and recombin 77.0 2.2 7.4E-05 34.9 4.0 20 73-92 19-38 (220)
269 1wp9_A ATP-dependent RNA helic 77.0 11 0.00038 34.3 9.4 91 83-186 340-442 (494)
270 2qmh_A HPR kinase/phosphorylas 76.7 0.97 3.3E-05 37.3 1.7 16 74-89 34-49 (205)
271 1njg_A DNA polymerase III subu 76.7 1.9 6.5E-05 35.4 3.6 16 76-91 47-62 (250)
272 1kag_A SKI, shikimate kinase I 76.7 1.3 4.6E-05 34.8 2.5 18 74-91 4-21 (173)
273 2j41_A Guanylate kinase; GMP, 76.6 1.1 3.9E-05 36.3 2.2 20 72-91 4-23 (207)
274 2ze6_A Isopentenyl transferase 76.5 1.1 3.8E-05 38.2 2.2 17 76-92 3-19 (253)
275 1y63_A LMAJ004144AAA protein; 76.5 1.3 4.3E-05 35.6 2.4 20 73-92 9-28 (184)
276 3tau_A Guanylate kinase, GMP k 76.4 1.3 4.4E-05 36.5 2.4 19 73-91 7-25 (208)
277 3t15_A Ribulose bisphosphate c 76.4 0.99 3.4E-05 39.4 1.8 18 75-92 37-54 (293)
278 1um8_A ATP-dependent CLP prote 76.1 5 0.00017 36.1 6.5 19 74-92 72-90 (376)
279 1w4r_A Thymidine kinase; type 75.9 2.8 9.4E-05 34.3 4.2 38 74-116 20-57 (195)
280 1u94_A RECA protein, recombina 75.9 2.9 9.8E-05 37.7 4.8 39 74-117 63-101 (356)
281 2qor_A Guanylate kinase; phosp 75.8 1.5 5.1E-05 35.8 2.7 21 71-91 9-29 (204)
282 2ehv_A Hypothetical protein PH 75.7 3.2 0.00011 34.6 4.9 22 71-92 27-48 (251)
283 2zr9_A Protein RECA, recombina 75.7 2.6 9E-05 37.8 4.5 39 74-117 61-99 (349)
284 1c4o_A DNA nucleotide excision 75.7 14 0.00048 36.2 10.0 71 107-187 439-513 (664)
285 1zp6_A Hypothetical protein AT 75.2 1.1 3.6E-05 36.0 1.6 20 71-90 6-25 (191)
286 4fcw_A Chaperone protein CLPB; 75.2 1.5 5.2E-05 38.2 2.7 17 76-92 49-65 (311)
287 1sxj_A Activator 1 95 kDa subu 75.0 4.3 0.00015 38.5 6.0 57 29-92 29-95 (516)
288 4a2q_A RIG-I, retinoic acid in 75.0 1 3.6E-05 45.2 1.8 33 296-328 258-290 (797)
289 2qp9_X Vacuolar protein sortin 74.9 1.4 4.8E-05 39.6 2.5 55 34-92 45-102 (355)
290 2z43_A DNA repair and recombin 74.9 3.2 0.00011 36.7 4.8 56 74-129 107-164 (324)
291 1iqp_A RFCS; clamp loader, ext 74.8 2.6 8.9E-05 36.7 4.2 17 76-92 48-64 (327)
292 3l9o_A ATP-dependent RNA helic 74.7 1.1 3.9E-05 46.8 2.0 35 295-329 193-227 (1108)
293 1ly1_A Polynucleotide kinase; 74.4 1.4 4.9E-05 34.7 2.2 16 76-91 4-19 (181)
294 2d7d_A Uvrabc system protein B 74.3 14 0.00049 36.1 9.7 71 107-187 445-519 (661)
295 2v1u_A Cell division control p 74.2 1.4 4.8E-05 39.5 2.3 19 74-92 44-62 (387)
296 1ypw_A Transitional endoplasmi 74.0 6 0.0002 39.8 7.0 20 73-92 237-256 (806)
297 1kht_A Adenylate kinase; phosp 74.0 1.6 5.4E-05 34.8 2.3 18 74-91 3-20 (192)
298 1ex7_A Guanylate kinase; subst 73.9 1.5 5.1E-05 35.6 2.2 16 75-90 2-17 (186)
299 3hu3_A Transitional endoplasmi 73.9 1.3 4.3E-05 42.0 1.9 55 36-92 200-256 (489)
300 3tr0_A Guanylate kinase, GMP k 73.7 1.6 5.6E-05 35.3 2.4 19 73-91 6-24 (205)
301 2wv9_A Flavivirin protease NS2 73.6 4.8 0.00016 39.6 6.1 68 107-186 410-478 (673)
302 4eun_A Thermoresistant glucoki 73.4 1.7 5.8E-05 35.3 2.4 20 73-92 28-47 (200)
303 3d8b_A Fidgetin-like protein 1 73.3 1.5 5.2E-05 39.4 2.3 19 74-92 117-135 (357)
304 2jlq_A Serine protease subunit 73.2 5.2 0.00018 37.1 6.0 68 107-186 188-256 (451)
305 1z6g_A Guanylate kinase; struc 73.2 1.8 6.3E-05 35.8 2.6 21 71-91 20-40 (218)
306 3kb2_A SPBC2 prophage-derived 73.1 1.6 5.3E-05 34.2 2.1 17 76-92 3-19 (173)
307 3cf2_A TER ATPase, transitiona 73.1 1.3 4.4E-05 44.5 1.9 55 34-91 471-528 (806)
308 3ney_A 55 kDa erythrocyte memb 73.1 1.7 5.7E-05 35.7 2.2 20 72-91 17-36 (197)
309 2ewv_A Twitching motility prot 73.0 1.3 4.5E-05 40.2 1.8 20 71-90 133-152 (372)
310 1knq_A Gluconate kinase; ALFA/ 72.9 1.4 4.9E-05 34.8 1.8 19 74-92 8-26 (175)
311 2r8r_A Sensor protein; KDPD, P 72.9 3.8 0.00013 34.4 4.5 21 76-96 8-28 (228)
312 1sxj_D Activator 1 41 kDa subu 72.8 2.3 7.8E-05 37.7 3.3 18 75-92 59-76 (353)
313 1sxj_E Activator 1 40 kDa subu 72.8 5.1 0.00018 35.4 5.7 44 37-92 11-54 (354)
314 1ry6_A Internal kinesin; kines 72.6 2.5 8.5E-05 38.2 3.5 20 73-92 82-103 (360)
315 3vfd_A Spastin; ATPase, microt 72.5 1.6 5.4E-05 39.7 2.2 19 74-92 148-166 (389)
316 2i1q_A DNA repair and recombin 72.5 4.6 0.00016 35.5 5.2 56 75-130 99-166 (322)
317 2z4s_A Chromosomal replication 72.5 5.7 0.00019 36.8 6.0 50 74-127 130-179 (440)
318 3crm_A TRNA delta(2)-isopenten 72.5 1.7 5.8E-05 38.6 2.3 17 76-92 7-23 (323)
319 4a2w_A RIG-I, retinoic acid in 72.4 1.5 5.2E-05 44.9 2.3 32 298-329 260-291 (936)
320 1xp8_A RECA protein, recombina 72.1 3.6 0.00012 37.2 4.5 40 74-118 74-113 (366)
321 3cm0_A Adenylate kinase; ATP-b 72.1 1.3 4.5E-05 35.3 1.4 20 73-92 3-22 (186)
322 1a5t_A Delta prime, HOLB; zinc 72.1 2.4 8.2E-05 37.7 3.3 34 60-93 3-43 (334)
323 4ddu_A Reverse gyrase; topoiso 72.0 1.5 5.1E-05 45.9 2.1 35 294-328 86-120 (1104)
324 4gp7_A Metallophosphoesterase; 72.0 1.6 5.4E-05 34.6 1.9 20 73-92 8-27 (171)
325 3nwj_A ATSK2; P loop, shikimat 71.9 2.2 7.5E-05 36.4 2.8 22 71-92 45-66 (250)
326 1znw_A Guanylate kinase, GMP k 71.8 1.9 6.6E-05 35.3 2.4 22 70-91 16-37 (207)
327 3u4q_B ATP-dependent helicase/ 71.3 3.3 0.00011 43.5 4.6 40 77-118 4-43 (1166)
328 3bgw_A DNAB-like replicative h 71.3 3.4 0.00012 38.4 4.2 49 74-128 197-245 (444)
329 2chq_A Replication factor C sm 71.2 5.4 0.00019 34.5 5.4 43 37-92 14-56 (319)
330 1hqc_A RUVB; extended AAA-ATPa 71.2 1.3 4.5E-05 38.8 1.3 19 74-92 38-56 (324)
331 3d3q_A TRNA delta(2)-isopenten 71.2 1.9 6.4E-05 38.7 2.3 17 76-92 9-25 (340)
332 2iut_A DNA translocase FTSK; n 70.9 5.2 0.00018 38.4 5.4 27 75-101 215-241 (574)
333 2l8b_A Protein TRAI, DNA helic 70.8 9.2 0.00031 30.9 6.0 63 60-126 35-99 (189)
334 3a00_A Guanylate kinase, GMP k 70.5 2.3 7.7E-05 34.1 2.5 17 75-91 2-18 (186)
335 1n0w_A DNA repair protein RAD5 70.4 4.5 0.00015 33.5 4.5 24 73-96 23-46 (243)
336 1pzn_A RAD51, DNA repair and r 70.3 3.2 0.00011 37.2 3.7 22 38-59 36-58 (349)
337 4h1g_A Maltose binding protein 69.8 3 0.0001 41.4 3.7 26 66-91 453-480 (715)
338 1s96_A Guanylate kinase, GMP k 69.4 2.4 8E-05 35.4 2.4 22 71-92 13-34 (219)
339 1g5t_A COB(I)alamin adenosyltr 69.3 5 0.00017 32.8 4.3 35 75-114 29-63 (196)
340 2qby_A CDC6 homolog 1, cell di 69.2 3 0.0001 37.2 3.3 19 74-92 45-63 (386)
341 2orv_A Thymidine kinase; TP4A 69.2 4.6 0.00016 34.0 4.1 40 74-118 19-58 (234)
342 3eph_A TRNA isopentenyltransfe 69.1 2 6.8E-05 39.5 2.0 16 77-92 5-20 (409)
343 1cr0_A DNA primase/helicase; R 69.1 4.2 0.00014 35.2 4.1 21 72-92 33-53 (296)
344 1fnn_A CDC6P, cell division co 69.0 2.9 0.0001 37.4 3.2 17 76-92 46-62 (389)
345 1f2t_A RAD50 ABC-ATPase; DNA d 68.6 2.4 8.2E-05 32.9 2.2 14 77-90 26-39 (149)
346 1gku_B Reverse gyrase, TOP-RG; 68.5 1.2 4.2E-05 46.3 0.5 32 296-328 66-97 (1054)
347 4a1f_A DNAB helicase, replicat 68.3 4.6 0.00016 36.1 4.2 49 74-128 46-94 (338)
348 1v5w_A DMC1, meiotic recombina 68.2 4.4 0.00015 36.2 4.1 55 75-129 123-179 (343)
349 3t61_A Gluconokinase; PSI-biol 68.0 2.3 8E-05 34.4 2.1 18 75-92 19-36 (202)
350 3pxg_A Negative regulator of g 67.9 2.9 9.9E-05 39.2 3.0 19 74-92 201-219 (468)
351 3uie_A Adenylyl-sulfate kinase 67.8 2.2 7.5E-05 34.6 1.9 20 72-91 23-42 (200)
352 1w36_B RECB, exodeoxyribonucle 67.7 8.6 0.00029 40.5 6.8 55 76-130 18-79 (1180)
353 1via_A Shikimate kinase; struc 67.7 2.7 9.3E-05 33.1 2.4 18 75-92 5-22 (175)
354 1ak2_A Adenylate kinase isoenz 67.6 2.5 8.5E-05 35.3 2.2 19 73-91 15-33 (233)
355 1g8p_A Magnesium-chelatase 38 67.6 1.3 4.5E-05 39.3 0.5 19 74-92 45-63 (350)
356 1sxj_C Activator 1 40 kDa subu 67.6 6.3 0.00022 34.8 5.1 17 76-92 48-64 (340)
357 1zuh_A Shikimate kinase; alpha 67.4 2.6 8.9E-05 32.9 2.2 18 75-92 8-25 (168)
358 1xjc_A MOBB protein homolog; s 67.4 6.5 0.00022 31.2 4.6 13 77-89 7-19 (169)
359 1m7g_A Adenylylsulfate kinase; 67.3 2.8 9.6E-05 34.3 2.5 31 61-92 13-43 (211)
360 2r6a_A DNAB helicase, replicat 67.3 5 0.00017 37.3 4.4 49 74-127 203-251 (454)
361 3o8b_A HCV NS3 protease/helica 67.2 8 0.00027 37.9 6.0 66 107-186 396-461 (666)
362 3cmw_A Protein RECA, recombina 67.1 10 0.00035 41.3 7.2 49 75-131 1432-1480(1706)
363 3e2i_A Thymidine kinase; Zn-bi 66.7 5.6 0.00019 33.1 4.1 40 74-118 28-67 (219)
364 3k1j_A LON protease, ATP-depen 66.6 4.1 0.00014 39.4 3.9 26 67-92 53-78 (604)
365 3cf2_A TER ATPase, transitiona 66.5 11 0.00039 37.7 7.0 18 75-92 239-256 (806)
366 2bdt_A BH3686; alpha-beta prot 66.5 2.7 9.1E-05 33.6 2.1 18 75-92 3-20 (189)
367 3f9v_A Minichromosome maintena 66.4 2.6 8.9E-05 40.8 2.4 15 76-90 329-343 (595)
368 1tev_A UMP-CMP kinase; ploop, 66.4 2.4 8.2E-05 33.8 1.8 19 74-92 3-21 (196)
369 2c95_A Adenylate kinase 1; tra 66.4 2.8 9.5E-05 33.6 2.2 20 72-91 7-26 (196)
370 2q6t_A DNAB replication FORK h 66.3 4.8 0.00016 37.3 4.1 49 74-127 200-248 (444)
371 1in4_A RUVB, holliday junction 66.3 2.8 9.5E-05 37.2 2.4 18 75-92 52-69 (334)
372 2eyq_A TRCF, transcription-rep 66.2 8.9 0.0003 40.3 6.5 72 107-186 812-887 (1151)
373 1gvn_B Zeta; postsegregational 66.0 2.2 7.5E-05 37.1 1.6 17 75-91 34-50 (287)
374 2z83_A Helicase/nucleoside tri 65.8 6.3 0.00022 36.6 4.9 54 107-165 190-244 (459)
375 2qby_B CDC6 homolog 3, cell di 65.5 2.7 9.2E-05 37.7 2.2 17 75-91 46-62 (384)
376 2rhm_A Putative kinase; P-loop 65.5 2.3 8E-05 33.9 1.6 18 74-91 5-22 (193)
377 3qf7_A RAD50; ABC-ATPase, ATPa 65.3 2.7 9.4E-05 37.9 2.2 16 76-91 25-40 (365)
378 2iyv_A Shikimate kinase, SK; t 65.2 3.4 0.00012 32.8 2.5 18 75-92 3-20 (184)
379 3pvs_A Replication-associated 65.1 2.7 9.3E-05 39.1 2.1 18 75-92 51-68 (447)
380 2bwj_A Adenylate kinase 5; pho 65.1 3.3 0.00011 33.2 2.4 20 72-91 10-29 (199)
381 2j37_W Signal recognition part 64.9 23 0.00078 33.4 8.5 85 76-168 103-195 (504)
382 3kta_A Chromosome segregation 64.9 2.7 9.3E-05 33.3 1.9 16 76-91 28-43 (182)
383 3fb4_A Adenylate kinase; psych 64.9 2.9 0.0001 34.2 2.1 17 76-92 2-18 (216)
384 1g41_A Heat shock protein HSLU 64.7 3.1 0.00011 38.7 2.5 19 74-92 50-68 (444)
385 3io5_A Recombination and repai 64.6 5.5 0.00019 35.3 3.9 43 76-121 30-72 (333)
386 1e6c_A Shikimate kinase; phosp 64.5 3.2 0.00011 32.4 2.2 18 75-92 3-20 (173)
387 4fn4_A Short chain dehydrogena 64.2 44 0.0015 28.3 9.5 81 72-166 5-93 (254)
388 1ye8_A Protein THEP1, hypothet 63.9 3.3 0.00011 33.2 2.2 15 76-90 2-16 (178)
389 1jr3_A DNA polymerase III subu 63.6 8.4 0.00029 34.2 5.1 17 76-92 40-56 (373)
390 2xxa_A Signal recognition part 63.5 21 0.00071 33.0 7.8 86 76-168 102-195 (433)
391 1cke_A CK, MSSA, protein (cyti 63.5 3.3 0.00011 34.1 2.2 18 75-92 6-23 (227)
392 3dl0_A Adenylate kinase; phosp 63.5 3.2 0.00011 33.9 2.1 17 76-92 2-18 (216)
393 2pez_A Bifunctional 3'-phospho 63.4 3.1 0.00011 32.9 1.9 19 73-91 4-22 (179)
394 1nlf_A Regulatory protein REPA 63.4 7.7 0.00026 33.2 4.7 24 70-93 26-49 (279)
395 2v54_A DTMP kinase, thymidylat 62.9 3.8 0.00013 33.0 2.4 19 73-91 3-21 (204)
396 3m6a_A ATP-dependent protease 62.9 3.3 0.00011 39.6 2.3 20 73-92 107-126 (543)
397 3tbk_A RIG-I helicase domain; 62.8 23 0.0008 33.0 8.3 74 107-186 389-475 (555)
398 3lnc_A Guanylate kinase, GMP k 62.7 2.9 9.9E-05 34.7 1.7 20 72-91 25-44 (231)
399 2cdn_A Adenylate kinase; phosp 62.6 3.9 0.00013 33.0 2.5 18 74-91 20-37 (201)
400 1aky_A Adenylate kinase; ATP:A 62.3 3.9 0.00013 33.6 2.4 18 74-91 4-21 (220)
401 1nks_A Adenylate kinase; therm 62.3 3.2 0.00011 33.0 1.9 16 76-91 3-18 (194)
402 1zd8_A GTP:AMP phosphotransfer 62.3 3.4 0.00012 34.2 2.1 19 73-91 6-24 (227)
403 3pxi_A Negative regulator of g 62.2 4.4 0.00015 40.4 3.2 19 74-92 201-219 (758)
404 3c8u_A Fructokinase; YP_612366 62.1 2.7 9.3E-05 34.3 1.4 16 74-89 22-37 (208)
405 2yvu_A Probable adenylyl-sulfa 61.7 3.5 0.00012 32.9 1.9 20 73-92 12-31 (186)
406 1qf9_A UMP/CMP kinase, protein 61.6 3.3 0.00011 32.9 1.8 16 76-91 8-23 (194)
407 4akg_A Glutathione S-transfera 61.6 3.4 0.00012 47.1 2.4 21 71-91 1264-1284(2695)
408 1gm5_A RECG; helicase, replica 61.5 3.1 0.00011 41.7 1.9 27 302-328 390-416 (780)
409 4gl2_A Interferon-induced heli 61.4 4.5 0.00015 39.7 3.0 74 107-186 400-487 (699)
410 2qt1_A Nicotinamide riboside k 61.1 1.8 6.2E-05 35.3 0.1 21 71-91 18-38 (207)
411 2plr_A DTMP kinase, probable t 61.0 3.3 0.00011 33.5 1.7 19 73-91 3-21 (213)
412 1zu4_A FTSY; GTPase, signal re 60.9 8.7 0.0003 33.9 4.6 17 76-92 107-123 (320)
413 1nij_A Hypothetical protein YJ 60.9 5.2 0.00018 35.2 3.1 14 77-90 7-20 (318)
414 3tif_A Uncharacterized ABC tra 60.8 4.2 0.00014 34.2 2.4 17 73-89 30-46 (235)
415 1q57_A DNA primase/helicase; d 60.6 6.5 0.00022 37.0 3.9 51 73-128 241-291 (503)
416 3asz_A Uridine kinase; cytidin 60.6 3.2 0.00011 33.8 1.6 18 74-91 6-23 (211)
417 1rj9_A FTSY, signal recognitio 60.5 9.4 0.00032 33.4 4.7 17 74-90 102-118 (304)
418 1zak_A Adenylate kinase; ATP:A 60.4 4.2 0.00014 33.5 2.3 19 74-92 5-23 (222)
419 2pt5_A Shikimate kinase, SK; a 60.4 4.1 0.00014 31.6 2.2 16 76-91 2-17 (168)
420 1ukz_A Uridylate kinase; trans 60.4 4 0.00014 33.0 2.1 16 76-91 17-32 (203)
421 2if2_A Dephospho-COA kinase; a 60.3 3.7 0.00013 33.2 1.9 16 76-91 3-18 (204)
422 1jjv_A Dephospho-COA kinase; P 59.7 4.1 0.00014 33.0 2.1 16 76-91 4-19 (206)
423 3a4m_A L-seryl-tRNA(SEC) kinas 59.5 4.2 0.00014 34.6 2.2 19 74-92 4-22 (260)
424 3cmu_A Protein RECA, recombina 59.5 8.1 0.00028 42.8 4.8 47 72-124 1079-1125(2050)
425 2v9p_A Replication protein E1; 59.5 4.2 0.00014 35.8 2.2 19 72-90 124-142 (305)
426 4e22_A Cytidylate kinase; P-lo 59.4 4.6 0.00016 34.2 2.4 19 73-91 26-44 (252)
427 3lda_A DNA repair protein RAD5 59.2 9.5 0.00033 34.9 4.6 25 35-59 82-106 (400)
428 2vli_A Antibiotic resistance p 58.7 3.5 0.00012 32.6 1.4 20 73-92 4-23 (183)
429 2i3b_A HCR-ntpase, human cance 58.7 5.3 0.00018 32.3 2.6 18 74-91 1-18 (189)
430 2bbw_A Adenylate kinase 4, AK4 58.7 4.4 0.00015 34.0 2.2 18 74-91 27-44 (246)
431 3qks_A DNA double-strand break 58.5 4.6 0.00016 33.0 2.2 16 76-91 25-40 (203)
432 3auy_A DNA double-strand break 58.4 3.9 0.00013 36.9 1.9 14 77-90 28-41 (371)
433 4a74_A DNA repair and recombin 58.1 4.2 0.00014 33.3 1.9 20 73-92 24-43 (231)
434 3pxi_A Negative regulator of g 57.5 7 0.00024 38.9 3.7 17 76-92 523-539 (758)
435 3cmw_A Protein RECA, recombina 57.5 9.4 0.00032 41.6 4.8 40 74-118 34-73 (1706)
436 2cbz_A Multidrug resistance-as 57.2 5.2 0.00018 33.6 2.4 17 73-89 30-46 (237)
437 1nn5_A Similar to deoxythymidy 57.1 4.8 0.00017 32.6 2.1 20 73-92 8-27 (215)
438 2dhr_A FTSH; AAA+ protein, hex 57.1 4.4 0.00015 38.3 2.0 53 35-92 26-82 (499)
439 2wwf_A Thymidilate kinase, put 57.0 4.8 0.00016 32.6 2.1 20 73-92 9-28 (212)
440 1ypw_A Transitional endoplasmi 56.9 1.7 6E-05 43.7 -0.8 56 34-92 471-529 (806)
441 2pbr_A DTMP kinase, thymidylat 56.8 5 0.00017 31.9 2.1 15 77-91 3-17 (195)
442 3tlx_A Adenylate kinase 2; str 56.8 5.1 0.00018 33.7 2.2 18 74-91 29-46 (243)
443 2f1r_A Molybdopterin-guanine d 56.7 4 0.00014 32.5 1.5 16 76-91 4-19 (171)
444 2jaq_A Deoxyguanosine kinase; 56.7 5.1 0.00017 32.1 2.1 16 76-91 2-17 (205)
445 3bs4_A Uncharacterized protein 56.5 11 0.00036 32.3 4.2 51 74-131 21-72 (260)
446 4a4z_A Antiviral helicase SKI2 56.3 4.3 0.00015 42.0 1.9 34 295-328 48-81 (997)
447 2xgj_A ATP-dependent RNA helic 56.2 4.2 0.00014 42.0 1.9 29 300-328 100-128 (1010)
448 1sgw_A Putative ABC transporte 56.1 6.3 0.00022 32.6 2.6 18 72-89 33-50 (214)
449 2p5t_B PEZT; postsegregational 56.1 3.3 0.00011 35.1 0.9 18 75-92 33-50 (253)
450 3be4_A Adenylate kinase; malar 56.0 5.1 0.00018 32.9 2.1 18 74-91 5-22 (217)
451 3b9q_A Chloroplast SRP recepto 56.0 11 0.00038 32.9 4.4 18 74-91 100-117 (302)
452 1uf9_A TT1252 protein; P-loop, 56.0 4.8 0.00016 32.3 1.9 16 76-91 10-25 (203)
453 1r6b_X CLPA protein; AAA+, N-t 55.3 7.7 0.00026 38.6 3.6 17 76-92 490-506 (758)
454 1r6b_X CLPA protein; AAA+, N-t 55.3 5.3 0.00018 39.7 2.4 19 74-92 207-225 (758)
455 2pze_A Cystic fibrosis transme 55.1 6.1 0.00021 33.0 2.4 17 73-89 33-49 (229)
456 1rz3_A Hypothetical protein rb 54.9 5.1 0.00018 32.4 1.9 17 75-91 23-39 (201)
457 2z0h_A DTMP kinase, thymidylat 54.9 5.6 0.00019 31.7 2.1 16 77-92 3-18 (197)
458 3nh6_A ATP-binding cassette SU 54.8 6.7 0.00023 34.5 2.7 18 73-90 79-96 (306)
459 1z5z_A Helicase of the SNF2/RA 54.6 46 0.0016 28.3 8.0 75 82-164 92-172 (271)
460 1sxj_B Activator 1 37 kDa subu 54.6 9.5 0.00032 32.9 3.7 17 76-92 44-60 (323)
461 2ff7_A Alpha-hemolysin translo 54.6 6.1 0.00021 33.4 2.4 17 73-89 34-50 (247)
462 3ice_A Transcription terminati 54.5 44 0.0015 30.5 8.0 33 60-92 157-192 (422)
463 1e4v_A Adenylate kinase; trans 54.4 5.2 0.00018 32.7 1.8 16 76-91 2-17 (214)
464 2xb4_A Adenylate kinase; ATP-b 54.3 5.8 0.0002 32.8 2.1 16 76-91 2-17 (223)
465 1vht_A Dephospho-COA kinase; s 54.0 5.9 0.0002 32.4 2.1 18 75-92 5-22 (218)
466 2ghi_A Transport protein; mult 53.9 6.3 0.00022 33.6 2.4 18 72-89 44-61 (260)
467 3tqf_A HPR(Ser) kinase; transf 53.6 5.1 0.00018 32.2 1.6 19 73-91 15-33 (181)
468 3gfo_A Cobalt import ATP-bindi 53.4 6.5 0.00022 33.9 2.4 17 73-89 33-49 (275)
469 1ko7_A HPR kinase/phosphatase; 53.3 23 0.00077 31.2 5.9 47 44-90 92-160 (314)
470 3qiv_A Short-chain dehydrogena 53.3 93 0.0032 25.5 10.4 82 72-167 7-96 (253)
471 1ltq_A Polynucleotide kinase; 53.2 6 0.00021 34.1 2.2 17 76-92 4-20 (301)
472 1qvr_A CLPB protein; coiled co 53.1 6.1 0.00021 40.0 2.5 17 76-92 590-606 (854)
473 1ls1_A Signal recognition part 53.1 14 0.00047 32.1 4.5 18 74-91 98-115 (295)
474 3vkg_A Dynein heavy chain, cyt 53.0 6.5 0.00022 45.5 2.8 26 65-90 1294-1320(3245)
475 3qkt_A DNA double-strand break 52.9 6.1 0.00021 35.1 2.2 15 77-91 26-40 (339)
476 1g6h_A High-affinity branched- 52.4 6.9 0.00024 33.3 2.4 18 72-89 31-48 (257)
477 4g1u_C Hemin import ATP-bindin 52.4 7 0.00024 33.5 2.4 17 73-89 36-52 (266)
478 1mv5_A LMRA, multidrug resista 52.3 5.9 0.0002 33.4 1.9 17 73-89 27-43 (243)
479 3tjr_A Short chain dehydrogena 52.2 1E+02 0.0034 26.3 10.0 81 72-166 29-117 (301)
480 2grj_A Dephospho-COA kinase; T 52.1 6.7 0.00023 31.8 2.1 17 76-92 14-30 (192)
481 2pcj_A ABC transporter, lipopr 52.0 6.5 0.00022 32.7 2.1 17 73-89 29-45 (224)
482 2v3c_C SRP54, signal recogniti 52.0 9.9 0.00034 35.1 3.5 84 76-168 101-192 (432)
483 1odf_A YGR205W, hypothetical 3 52.0 6.5 0.00022 34.2 2.2 15 77-91 34-48 (290)
484 1ji0_A ABC transporter; ATP bi 51.9 7.2 0.00024 32.8 2.4 17 73-89 31-47 (240)
485 2vhj_A Ntpase P4, P4; non- hyd 51.3 8.5 0.00029 34.2 2.8 20 73-92 122-141 (331)
486 3sr0_A Adenylate kinase; phosp 51.1 7 0.00024 32.1 2.1 15 76-90 2-16 (206)
487 1b0u_A Histidine permease; ABC 51.1 7.6 0.00026 33.2 2.4 17 73-89 31-47 (262)
488 2d2e_A SUFC protein; ABC-ATPas 51.1 7.5 0.00026 32.9 2.4 18 73-90 28-45 (250)
489 3sju_A Keto reductase; short-c 51.1 92 0.0031 26.2 9.5 85 68-166 18-110 (279)
490 3e70_C DPA, signal recognition 50.8 15 0.00051 32.6 4.3 17 74-90 129-145 (328)
491 2qi9_C Vitamin B12 import ATP- 50.8 7.8 0.00027 32.9 2.4 17 73-89 25-41 (249)
492 2zu0_C Probable ATP-dependent 50.7 7.7 0.00026 33.2 2.4 18 73-90 45-62 (267)
493 2jeo_A Uridine-cytidine kinase 50.6 7 0.00024 32.7 2.1 19 74-92 25-43 (245)
494 2ixe_A Antigen peptide transpo 50.5 7.7 0.00026 33.3 2.4 18 72-89 43-60 (271)
495 1vpl_A ABC transporter, ATP-bi 50.5 7.9 0.00027 33.0 2.4 17 73-89 40-56 (256)
496 2qen_A Walker-type ATPase; unk 50.4 10 0.00034 33.1 3.2 18 73-90 30-47 (350)
497 3umf_A Adenylate kinase; rossm 50.4 7.4 0.00025 32.3 2.1 17 74-90 29-45 (217)
498 2nq2_C Hypothetical ABC transp 50.2 7.9 0.00027 32.9 2.4 17 73-89 30-46 (253)
499 2va8_A SSO2462, SKI2-type heli 50.2 33 0.0011 33.6 7.2 74 107-186 252-361 (715)
500 1uj2_A Uridine-cytidine kinase 50.1 7.2 0.00025 32.8 2.1 17 76-92 24-40 (252)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=9.5e-46 Score=352.05 Aligned_cols=291 Identities=28% Similarity=0.418 Sum_probs=238.7
Q ss_pred ccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc---cCC
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA---TSG 107 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~ 107 (333)
+-+.+..+|++++|++.++++|+++||.+|||+|.++||.+++|+|++++||||||||++|++|+++.+..... ..+
T Consensus 50 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~ 129 (434)
T 2db3_A 50 DVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGR 129 (434)
T ss_dssp SCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTC
T ss_pred CCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999876432 246
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 108 VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 108 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
+++||++||++|+.|+++.+++++...++++..++||.+...+...+.++++|+|+||++|++++.++.+.+++++++|+
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 79999999999999999999999988899999999999998888888889999999999999999998889999999996
Q ss_pred ----------HHHHHhhcc-----ccceeeeecCCChHHHHHhhh----cCCcEE-Ee----CCCceEEEEEec--chhh
Q psy18032 188 ----------FVKELGKFT-----KLQSTCLLGGDSMDNQFARLH----ASPDIV-VA----TPGRFLHIVVEM--ELKL 241 (333)
Q Consensus 188 ----------~i~~l~~~~-----~~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~----t~~~i~~~~~~~--~~k~ 241 (333)
|.+++.+++ +...|++++|||+++.+..+. .++..+ ++ +...+.+.+... ..|.
T Consensus 210 DEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 210 DEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp ETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHH
T ss_pred ccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHH
Confidence 233333332 356899999999998877664 333322 22 234566666543 2222
Q ss_pred hhH----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCc
Q psy18032 242 SSI----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTI 295 (333)
Q Consensus 242 ~~l----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i 295 (333)
..+ .+|||++++.|+.+++.|. |+++..+|| +.+.+++|++|+.+|||||| +++
T Consensus 290 ~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v 369 (434)
T 2db3_A 290 SKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNI 369 (434)
T ss_dssp HHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTC
T ss_pred HHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccC
Confidence 222 5899999999999999996 899999998 23566999999999999999 456
Q ss_pred ccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 296 PLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 296 ~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
..||+ ..|+||+|||| .|++..|+.|
T Consensus 370 ~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~ 406 (434)
T 2db3_A 370 KHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDP 406 (434)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECT
T ss_pred CEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEec
Confidence 66664 45999999999 4666665543
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-41 Score=321.80 Aligned_cols=281 Identities=23% Similarity=0.379 Sum_probs=227.1
Q ss_pred ccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc------
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA------ 104 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~------ 104 (333)
+.+.+..+|++++|++.++++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+.....
T Consensus 9 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 88 (417)
T 2i4i_A 9 NCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRA 88 (417)
T ss_dssp TCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhc
Confidence 34567788999999999999999999999999999999999999999999999999999999999998865321
Q ss_pred ----------cCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh
Q psy18032 105 ----------TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 174 (333)
Q Consensus 105 ----------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~ 174 (333)
..++++||++||++|+.|+++.++.++...++++..++|+....++...+.++++|+|+||++|.+++..
T Consensus 89 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~ 168 (417)
T 2i4i_A 89 MKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER 168 (417)
T ss_dssp HHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT
T ss_pred cccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc
Confidence 1246899999999999999999999988889999999999998888888888999999999999999998
Q ss_pred ccccccCchhhHH----------HHHHHhhccc-------cceeeeecCCChHHHHHhhh----cCCcEEEe-----CCC
Q psy18032 175 MELKLSSIQYTFK----------FVKELGKFTK-------LQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPG 228 (333)
Q Consensus 175 ~~~~~~~l~~lV~----------~i~~l~~~~~-------~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~ 228 (333)
+.+.+++++++|+ +...+..+.. ...+++++|||+++.+..+. ..+..+.. .+.
T Consensus 169 ~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (417)
T 2i4i_A 169 GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSE 248 (417)
T ss_dssp TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCS
T ss_pred CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 8888899998885 1222222221 25789999999987665442 34433321 334
Q ss_pred ceEEEEEec--chhhhh------------HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcc
Q psy18032 229 RFLHIVVEM--ELKLSS------------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKK 286 (333)
Q Consensus 229 ~i~~~~~~~--~~k~~~------------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~ 286 (333)
.+.+.+... ..+... ..+|||++++.++.+++.|. |+.+..+|| +++.+++|++|+.+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 566655433 222221 15899999999999999996 899999998 33566999999999
Q ss_pred cccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 287 YVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 287 vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
|||||| +++..|++ ..|+||+||+|
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~g 368 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 368 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBC
T ss_pred EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccc
Confidence 999998 44555554 45899999999
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5e-41 Score=316.71 Aligned_cols=280 Identities=23% Similarity=0.440 Sum_probs=228.9
Q ss_pred cccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCce
Q psy18032 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVR 109 (333)
Q Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 109 (333)
..+.+...+|++++|++.++++|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+... ..+++
T Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~ 107 (410)
T 2j0s_A 30 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQ 107 (410)
T ss_dssp CTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCC
T ss_pred CCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--cCCce
Confidence 3344567899999999999999999999999999999999999999999999999999999999999987642 24679
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--
Q psy18032 110 ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-- 187 (333)
Q Consensus 110 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-- 187 (333)
+||++||++|+.|+++.++.++...++.+..+.|+....++...+..+++|+|+||+++.+++..+.+.+..++++|+
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 999999999999999999999988999999999999998888888888999999999999999998888889999885
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---hhhhhH
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---LKLSSI 244 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~k~~~l 244 (333)
.+..+...++...|++++|||+++.+..+. ..+..+.. +...+.+.+.... .+...+
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 267 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL 267 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHH
Confidence 122233334567899999999998776553 23322221 3345666655432 122222
Q ss_pred -----------HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCccc
Q psy18032 245 -----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPL 297 (333)
Q Consensus 245 -----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~ 297 (333)
.+|||++++.++.+++.|. |+.+..+|| +| +.+++|++|+.+|||||| +++..
T Consensus 268 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 268 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp HHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 5899999999999999996 889999998 23 456999999999999998 44555
Q ss_pred ccc-------cccEEEEccCC
Q psy18032 298 VLE-------GRDVVAMARTG 311 (333)
Q Consensus 298 vi~-------~~~~~~~grtG 311 (333)
|++ ..|+||+||+|
T Consensus 348 Vi~~~~p~s~~~~~Qr~GR~g 368 (410)
T 2j0s_A 348 IINYDLPNNRELYIHRIGRSG 368 (410)
T ss_dssp EEESSCCSSHHHHHHHHTTSS
T ss_pred EEEECCCCCHHHHHHhccccc
Confidence 554 44899999999
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.1e-39 Score=301.22 Aligned_cols=277 Identities=23% Similarity=0.415 Sum_probs=218.7
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
.....+|+++++++.+++.|+++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..+.++||
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~li 113 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD--LKATQALV 113 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT--SCSCCEEE
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc--CCceeEEE
Confidence 4556799999999999999999999999999999999999999999999999999999999999988652 24678999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh-CCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
++|+++|+.|+++.++.++...+..+..++|+.....+...+. .+++|+|+||+++.+++..+.+.+..++++|+
T Consensus 114 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 114 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 193 (414)
T ss_dssp ECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH
T ss_pred EeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH
Confidence 9999999999999999999989999999999998887777666 57999999999999999998888888888885
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---hhhhhH--
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---LKLSSI-- 244 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~k~~~l-- 244 (333)
.+..+...++...+++++|||++..+..+. ..+..+.. ++..+.+.+.... .+...+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 194 EMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp HHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHH
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHH
Confidence 122222334567899999999987766543 23322221 2234555554332 122222
Q ss_pred ---------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCccccc
Q psy18032 245 ---------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVL 299 (333)
Q Consensus 245 ---------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi 299 (333)
.+|||++++.++.+++.|. ++.+..+|| +.+.++.|++|+.+|||||+ +++..||
T Consensus 274 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi 353 (414)
T 3eiq_A 274 LYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 (414)
T ss_dssp HHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE
T ss_pred HHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE
Confidence 5899999999999999996 889999998 23456999999999999998 4455566
Q ss_pred c-------cccEEEEccCC
Q psy18032 300 E-------GRDVVAMARTG 311 (333)
Q Consensus 300 ~-------~~~~~~~grtG 311 (333)
+ ..|+||+||+|
T Consensus 354 ~~~~p~s~~~~~Qr~GR~g 372 (414)
T 3eiq_A 354 NYDLPTNRENYIHRIGRGG 372 (414)
T ss_dssp ESSCCSSTHHHHHHSCCC-
T ss_pred EeCCCCCHHHhhhhcCccc
Confidence 4 45899999999
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.9e-39 Score=301.43 Aligned_cols=276 Identities=28% Similarity=0.465 Sum_probs=221.4
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
....+|++++|+++++++|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+... ..++++||+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil 95 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--LNKIQALIM 95 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--cCCccEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999987652 236689999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------ 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------ 187 (333)
+|+++|+.|+++.++.++...++.+....|+.....+...+..+++|+|+||+++.+++......+.+++++|+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 175 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHh
Confidence 99999999999999999988899999999999888877777788999999999999999888788888888885
Q ss_pred ----H---HHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEE----eCCCceEEEEEec--chhhhhH------
Q psy18032 188 ----F---VKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVV----ATPGRFLHIVVEM--ELKLSSI------ 244 (333)
Q Consensus 188 ----~---i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~----~t~~~i~~~~~~~--~~k~~~l------ 244 (333)
+ +..+...++...+.+++|||++..+..+. ..+..+. .+...+.+++... ..+...+
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 255 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSK 255 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhh
Confidence 2 22233334567899999999987665432 2232211 1233455555432 2222221
Q ss_pred -----HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc---
Q psy18032 245 -----QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE--- 300 (333)
Q Consensus 245 -----~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~--- 300 (333)
.+|||++++.++.+++.|. |+.+..+|| +++.+++|++|+.+|||||+ +++..|++
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 5899999999999999997 899999998 33556999999999999998 34455554
Q ss_pred ----cccEEEEccCC
Q psy18032 301 ----GRDVVAMARTG 311 (333)
Q Consensus 301 ----~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 336 p~s~~~~~Qr~GR~g 350 (400)
T 1s2m_A 336 PKTAETYLHRIGRSG 350 (400)
T ss_dssp CSSHHHHHHHHCBSS
T ss_pred CCCHHHHHHhcchhc
Confidence 35899999998
No 6
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=310.82 Aligned_cols=281 Identities=23% Similarity=0.391 Sum_probs=150.0
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
...+|++++|+++++++|.++||..|+|+|.++++.+++| +|++++||||||||++|++|+++.+... ..++++||
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--~~~~~~li 167 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLC 167 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--SCSCCEEE
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--CCCCcEEE
Confidence 3569999999999999999999999999999999999997 9999999999999999999999988763 34669999
Q ss_pred EcccHHHHHHHHHHHHHHhcc-CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchhhHH---
Q psy18032 113 LSPTRELALQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQYTFK--- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~lV~--- 187 (333)
++||++|+.|+++.++.++.. .++.+....++...... ...+++|+|+||+++++++.+ +.+.+++++++|+
T Consensus 168 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEa 244 (479)
T 3fmp_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (479)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCH
T ss_pred EeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECH
Confidence 999999999999999998875 36778778777654432 133679999999999999865 4567889999885
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---hhh---
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---LKL--- 241 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~k~--- 241 (333)
....+.+..+...|++++|||++..+..+. ..+.++.. +...+.+.+.... .+.
T Consensus 245 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 324 (479)
T 3fmp_B 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 324 (479)
T ss_dssp HHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------
T ss_pred HHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHH
Confidence 111233344567899999999998765543 33333322 1223333332211 111
Q ss_pred --------hhHHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCccc
Q psy18032 242 --------SSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPL 297 (333)
Q Consensus 242 --------~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~ 297 (333)
..-.+|||++++.|+.++..|. ++.+..+|| +++.++.|++|+.+|||||+ +++..
T Consensus 325 ~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~ 404 (479)
T 3fmp_B 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCE
Confidence 1236899999999999999997 788999998 23456999999999999998 45666
Q ss_pred ccc-------------cccEEEEccCC----CchhhHHHh
Q psy18032 298 VLE-------------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 298 vi~-------------~~~~~~~grtG----~g~~~~~~l 320 (333)
||+ ..|+||+||+| .|++..|+-
T Consensus 405 VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~ 444 (479)
T 3fmp_B 405 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444 (479)
T ss_dssp ----------------------------------------
T ss_pred EEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 664 25999999999 344555443
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.1e-38 Score=296.62 Aligned_cols=277 Identities=24% Similarity=0.381 Sum_probs=158.5
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEE
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~l 111 (333)
..+...+|+++++++.++++|.++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++|
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--~~~~~~l 93 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQAL 93 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--CCSCCEE
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--CCCCCEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999987652 3467999
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
|++|+++|+.|+++.++.+....++++..+.|+....+....+. +++|+|+||+++.+.+....+.+.+++++|+
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 94 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 172 (394)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH
Confidence 99999999999999999998888999999999988777655554 6899999999999999888888888888885
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhh----hcCCcEEEeC-----CCceEEEEEecc---hhh-----
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVAT-----PGRFLHIVVEME---LKL----- 241 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l----~~~~~i~~~t-----~~~i~~~~~~~~---~k~----- 241 (333)
.+..+...++...+.+++|||+++.+..+ ...+..+... +..+.+.+.... .+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------
T ss_pred HhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHH
Confidence 12222333456789999999998765443 2333322221 122222222110 011
Q ss_pred ------hhHHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCccccc
Q psy18032 242 ------SSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVL 299 (333)
Q Consensus 242 ------~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi 299 (333)
..-.+|||++++.++.+++.|. ++.+..+|| +++.++.|++|+.+|||||+ +++..|+
T Consensus 253 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 253 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE
Confidence 1236899999999999999997 788999998 23456999999999999998 4455555
Q ss_pred c-------cccEEEEccCC
Q psy18032 300 E-------GRDVVAMARTG 311 (333)
Q Consensus 300 ~-------~~~~~~~grtG 311 (333)
. ..|+||+||+|
T Consensus 333 ~~~~p~s~~~~~Qr~GR~~ 351 (394)
T 1fuu_A 333 NYDLPANKENYIHRIGRGG 351 (394)
T ss_dssp -------------------
T ss_pred EeCCCCCHHHHHHHcCccc
Confidence 4 46999999999
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.7e-38 Score=296.73 Aligned_cols=274 Identities=23% Similarity=0.397 Sum_probs=215.3
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRA 110 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 110 (333)
.....+|+++++++.++++|.++||..|+|+|.++++.++++ +|++++||||||||++|++|+++.+... ..++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~ 98 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQC 98 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCE
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--CCCCCE
Confidence 355679999999999999999999999999999999999998 9999999999999999999999988763 346689
Q ss_pred EEEcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchhhHH-
Q psy18032 111 LILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQYTFK- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~lV~- 187 (333)
||++||++|+.|+++.+++++... ++.+....++...... ...+++|+|+||+++.+++.+ +.+.+++++++|+
T Consensus 99 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 999999999999999999987763 6788888887765432 134689999999999998865 5667888888885
Q ss_pred H-------------HHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---hhhh
Q psy18032 188 F-------------VKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---LKLS 242 (333)
Q Consensus 188 ~-------------i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~k~~ 242 (333)
. ...+...++...|++++|||+++.+..+. ..+..+.. +...+.+.+.... .+..
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQ 255 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHH
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHH
Confidence 1 11223334567899999999987765543 33433322 2345566555432 2222
Q ss_pred hH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCc
Q psy18032 243 SI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTI 295 (333)
Q Consensus 243 ~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i 295 (333)
.+ .+|||++++.++.+++.|. ++.+..+|| +.+.++.|++|+.+|||||+ +++
T Consensus 256 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 335 (412)
T 3fht_A 256 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQV 335 (412)
T ss_dssp HHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTE
T ss_pred HHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCC
Confidence 21 5899999999999999996 889999998 23456999999999999998 455
Q ss_pred ccccc-------------cccEEEEccCC
Q psy18032 296 PLVLE-------------GRDVVAMARTG 311 (333)
Q Consensus 296 ~~vi~-------------~~~~~~~grtG 311 (333)
..|++ ..|+||+||+|
T Consensus 336 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~g 364 (412)
T 3fht_A 336 SVVINFDLPVDKDGNPDNETYLHRIGRTG 364 (412)
T ss_dssp EEEEESSCCBCSSSSBCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCCCCcchheeecccCccc
Confidence 55553 25999999999
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.7e-38 Score=312.51 Aligned_cols=277 Identities=26% Similarity=0.371 Sum_probs=212.9
Q ss_pred CCCcccccC----CCHHHHHHHHhCCCCCCcHHHHhHHHHHh--cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc--cC
Q psy18032 35 MGGGFQSFG----LGFEVLKGVLKRGYKIPTPIQRKTIPLVL--EGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--TS 106 (333)
Q Consensus 35 ~~~~f~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~ 106 (333)
...+|+++. |++++++++.++||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+..... ..
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~ 94 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQY 94 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTT
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccC
Confidence 344666665 99999999999999999999999999999 78899999999999999999999999877431 23
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhc----cCCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhc-ccccc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGK----FTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEM-ELKLS 180 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~-~~~~~ 180 (333)
++++||++||++|+.|+++.++.+.. ...+.+..+.|+.....+...+.. +++|+|+||+++++++.+. ...++
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 57999999999999999999999763 245778889999988877777654 7999999999999988765 44677
Q ss_pred CchhhHH----------HHHHHhhc---cc-------cceeeeecCCChHHHHHhhh----cCCcEE-EeC--------C
Q psy18032 181 SIQYTFK----------FVKELGKF---TK-------LQSTCLLGGDSMDNQFARLH----ASPDIV-VAT--------P 227 (333)
Q Consensus 181 ~l~~lV~----------~i~~l~~~---~~-------~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~t--------~ 227 (333)
.++++|+ |.+++..+ ++ ...|++++|||+++.+..+. ..+..+ +.. .
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 254 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccc
Confidence 7888875 22332222 21 26699999999998776654 233222 221 1
Q ss_pred CceEEEEEecch---h----hh------------hHHHHhhcchhhHHHHHHHhc-----CCCcccccc------chHHH
Q psy18032 228 GRFLHIVVEMEL---K----LS------------SIQLSLTDFKQDTSRIALDLV-----GDSTEMIHK------QRQSV 277 (333)
Q Consensus 228 ~~i~~~~~~~~~---k----~~------------~l~lif~~~~~~~~~l~~~L~-----g~~~~~lh~------~r~~l 277 (333)
..+.+.+..... + .. .-.+|||++++.|+.+++.|. ++.+..+|| +.+.+
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~ 334 (579)
T 3sqw_A 255 ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 334 (579)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred cccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH
Confidence 234444433211 0 00 115899999999999998885 788999998 23456
Q ss_pred hhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 278 RKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 278 ~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
++|++|+.+|||||| +++..||+ ..|+||+||+|
T Consensus 335 ~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRag 383 (579)
T 3sqw_A 335 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 383 (579)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSS
T ss_pred HHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccc
Confidence 999999999999999 44666664 55999999999
No 10
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7e-38 Score=292.97 Aligned_cols=274 Identities=23% Similarity=0.394 Sum_probs=216.5
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.++|++++|+++++++|.++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++||++|
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~P 84 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMCH 84 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--TTCCCEEEECS
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--CCCeeEEEECC
Confidence 3679999999999999999999999999999999999999999999999999999999999987652 23568999999
Q ss_pred cHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH------
Q psy18032 116 TRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK------ 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------ 187 (333)
+++|+.|+++.++++.... ++++..+.|+.+...+...+.+ .++|+|+||+++..++....+.+.+++++|+
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~ 164 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 164 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHH
Confidence 9999999999999987765 8999999999988777666655 4899999999999999988888888888885
Q ss_pred -----HHHH---HhhccccceeeeecCCChHHHHHh----hhcCCcEEEeC------CCceEEEEEec--chhhhhH---
Q psy18032 188 -----FVKE---LGKFTKLQSTCLLGGDSMDNQFAR----LHASPDIVVAT------PGRFLHIVVEM--ELKLSSI--- 244 (333)
Q Consensus 188 -----~i~~---l~~~~~~~~~~l~~sAT~~~~v~~----l~~~~~i~~~t------~~~i~~~~~~~--~~k~~~l--- 244 (333)
+... +....+...|.+++|||+++.+.. ....+..+... ...+.+.+... ..+...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (391)
T 1xti_A 165 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL 244 (391)
T ss_dssp TSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHH
T ss_pred hhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHH
Confidence 1112 222334578999999998765433 33444333321 23445555432 2222222
Q ss_pred --------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc
Q psy18032 245 --------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE 300 (333)
Q Consensus 245 --------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~ 300 (333)
.+|||++++.++.+++.|. |+++..+|| +++.+++|++|+.+|||||+ +++..|+.
T Consensus 245 l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~ 324 (391)
T 1xti_A 245 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN 324 (391)
T ss_dssp HHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE
T ss_pred HHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE
Confidence 5899999999999999996 889999998 33456999999999999998 34455553
Q ss_pred -------cccEEEEccCC
Q psy18032 301 -------GRDVVAMARTG 311 (333)
Q Consensus 301 -------~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 325 ~~~p~s~~~~~Qr~GR~~ 342 (391)
T 1xti_A 325 YDMPEDSDTYLHRVARAG 342 (391)
T ss_dssp SSCCSSHHHHHHHHCBCS
T ss_pred eCCCCCHHHHHHhccccc
Confidence 44899999998
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1e-37 Score=291.67 Aligned_cols=272 Identities=23% Similarity=0.436 Sum_probs=214.9
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~l 111 (333)
+...+|++++|++.++++|.++||..|+|+|.++++.++++ +|+++++|||||||++|++|++..+... ..++++|
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~l 79 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--DASPQAI 79 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--CCSCCEE
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--CCCccEE
Confidence 45689999999999999999999999999999999999998 9999999999999999999999987652 2467899
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-H--
Q psy18032 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-F-- 188 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~-- 188 (333)
|++|+++|+.|+++.+++++...++.+....++...... ..+++|+|+||+++.+++......+.+++++|+ .
T Consensus 80 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 80 CLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEAD 155 (395)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHH
T ss_pred EECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChh
Confidence 999999999999999999998888988888877644332 236899999999999999988888899998885 1
Q ss_pred -----------HHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---hhhhhH-
Q psy18032 189 -----------VKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---LKLSSI- 244 (333)
Q Consensus 189 -----------i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~k~~~l- 244 (333)
+..+....+...|++++|||+++.+..+. ..+..+.. .+..+.+.+.... .+...+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (395)
T 3pey_A 156 NMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLT 235 (395)
T ss_dssp HHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHH
T ss_pred hhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHH
Confidence 11123334567899999999987765543 23322221 2334555554431 122211
Q ss_pred ----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccc
Q psy18032 245 ----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLV 298 (333)
Q Consensus 245 ----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~v 298 (333)
.+|||++++.++.+++.|. ++.+..+|| +.+.+++|++|+.+|||||+ +++..|
T Consensus 236 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V 315 (395)
T 3pey_A 236 ELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMV 315 (395)
T ss_dssp HHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEE
T ss_pred HHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEE
Confidence 5899999999999999997 889999998 33556999999999999998 344455
Q ss_pred cc-------------cccEEEEccCC
Q psy18032 299 LE-------------GRDVVAMARTG 311 (333)
Q Consensus 299 i~-------------~~~~~~~grtG 311 (333)
++ ..|+||+||+|
T Consensus 316 i~~~~p~~~~~~~s~~~~~Qr~GR~g 341 (395)
T 3pey_A 316 VNYDLPTLANGQADPATYIHRIGRTG 341 (395)
T ss_dssp EESSCCBCTTSSBCHHHHHHHHTTSS
T ss_pred EEcCCCCCCcCCCCHHHhhHhccccc
Confidence 52 35889999998
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.5e-38 Score=309.26 Aligned_cols=284 Identities=26% Similarity=0.378 Sum_probs=214.1
Q ss_pred CcccccC----CCHHHHHHHHhCCCCCCcHHHHhHHHHHh--cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc--cCCc
Q psy18032 37 GGFQSFG----LGFEVLKGVLKRGYKIPTPIQRKTIPLVL--EGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--TSGV 108 (333)
Q Consensus 37 ~~f~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~ 108 (333)
.+|+++. |++++++++.++||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+..... ..++
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 4566664 99999999999999999999999999999 67899999999999999999999999877432 2356
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcc----CCceEEEEECCcchHHHHHHhh-CCCCEEEECchHHHHHHHhc-cccccCc
Q psy18032 109 RALILSPTRELALQTFKFVKELGKF----TKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEM-ELKLSSI 182 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~l~-~~~~IlI~TP~rll~~l~~~-~~~~~~l 182 (333)
++|||+||++|+.|+++.++.+... ....+..+.|+.....+...+. .+++|+|+||+++++++.+. ...++.+
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 8999999999999999999987532 3567888899988877766664 47999999999999988765 3457778
Q ss_pred hhhHH----------HHHHHhhc---c-------ccceeeeecCCChHHHHHhhh----cCCcEE-Ee--------CCCc
Q psy18032 183 QYTFK----------FVKELGKF---T-------KLQSTCLLGGDSMDNQFARLH----ASPDIV-VA--------TPGR 229 (333)
Q Consensus 183 ~~lV~----------~i~~l~~~---~-------~~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~--------t~~~ 229 (333)
+++|+ |.+++..+ + +...|++++|||+++.+..+. ..+..+ .. +...
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccccc
Confidence 88885 22222222 1 126789999999998776654 223222 21 1223
Q ss_pred eEEEEEecch---h----hh------------hHHHHhhcchhhHHHHHHHhc-----CCCcccccc------chHHHhh
Q psy18032 230 FLHIVVEMEL---K----LS------------SIQLSLTDFKQDTSRIALDLV-----GDSTEMIHK------QRQSVRK 279 (333)
Q Consensus 230 i~~~~~~~~~---k----~~------------~l~lif~~~~~~~~~l~~~L~-----g~~~~~lh~------~r~~l~~ 279 (333)
+.+.+..... + .. .-.+|||++++.|+.++..|. ++++..+|| +.+.+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 308 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred CceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 4444433211 1 00 125899999999999998885 788999998 2345699
Q ss_pred hCCCCcccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHHh
Q psy18032 280 WDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 280 f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~l 320 (333)
|++|+.+|||||| +++..||+ ..|+||+||+| .|.+..|+.
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 447 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFIC 447 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEc
Confidence 9999999999999 44556664 55999999999 344444443
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.9e-37 Score=285.05 Aligned_cols=272 Identities=30% Similarity=0.466 Sum_probs=218.5
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
.++|++++|++.++++|+++||..|+|+|.++++.++++ +++++++|||||||++|++|++..+.. ..+.++||++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~---~~~~~~lil~ 81 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---NNGIEAIILT 81 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---SSSCCEEEEC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc---cCCCcEEEEc
Confidence 468999999999999999999999999999999999998 799999999999999999999988765 2467899999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------- 187 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------- 187 (333)
|+++|+.|+++.++.+....++.+..+.|+.....+...+. +++|+|+||+++.+.+..+.+.+.+++++|+
T Consensus 82 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 160 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEML 160 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhh
Confidence 99999999999999998888899999999988777666555 6899999999999999988888888888885
Q ss_pred ---HHHH---HhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-CCCceEEEEEec--chhhhhH----------
Q psy18032 188 ---FVKE---LGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-TPGRFLHIVVEM--ELKLSSI---------- 244 (333)
Q Consensus 188 ---~i~~---l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-t~~~i~~~~~~~--~~k~~~l---------- 244 (333)
+... +....+...+.+++|||+++....+. ..+..+.. ....+.+.+... ..+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 240 (367)
T 1hv8_A 161 NMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFY 240 (367)
T ss_dssp TTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEECCGGGHHHHHHHHHCSTTCC
T ss_pred hhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEEeChHHHHHHHHHHHhcCCCc
Confidence 1222 22233457889999999987654432 33333322 233455555432 2233322
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------c
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------G 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~ 301 (333)
.+|||++++.++.+++.|. |+.+..+|| +++.++.|++|+.+|||||+ +++..|+. .
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~ 320 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPE 320 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHH
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHH
Confidence 4899999999999999997 889999998 23456999999999999998 45566664 4
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.|+||+||+|
T Consensus 321 ~~~Q~~GR~~ 330 (367)
T 1hv8_A 321 SYMHRIGRTG 330 (367)
T ss_dssp HHHHHSTTTC
T ss_pred Hhhhcccccc
Confidence 5899999998
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-35 Score=270.77 Aligned_cols=257 Identities=25% Similarity=0.386 Sum_probs=202.9
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
|++++.++|+++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. +.++||++|+++|+.|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------GMKSLVVTPTRELTRQV 72 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------TCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------cCCEEEEeCCHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999874 56899999999999999
Q ss_pred HHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------------HHH
Q psy18032 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------------FVK 190 (333)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------------~i~ 190 (333)
++.+++++...++++..++|+.....+...+. +++|+|+||+++.+.+....+.+.+++++|+ .+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~ 151 (337)
T 2z0m_A 73 ASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIK 151 (337)
T ss_dssp HHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHH
Confidence 99999998888999999999988877666555 4899999999999999888888888888885 111
Q ss_pred HHhhccccceeeeecCCChHHHHHhh----hcCCcEEEe--CCCceEEEEEecchhh----h-------hHHHHhhcchh
Q psy18032 191 ELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVA--TPGRFLHIVVEMELKL----S-------SIQLSLTDFKQ 253 (333)
Q Consensus 191 ~l~~~~~~~~~~l~~sAT~~~~v~~l----~~~~~i~~~--t~~~i~~~~~~~~~k~----~-------~l~lif~~~~~ 253 (333)
.+....+...+.+++|||+++.+... ...+..+.. ...++.+.+.....+. . .-.+|||++++
T Consensus 152 ~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~ 231 (337)
T 2z0m_A 152 IILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRN 231 (337)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHH
T ss_pred HHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHH
Confidence 22223345678889999998765443 233433322 2234555544332111 1 11589999999
Q ss_pred hHHHHHHHhcCCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 254 DTSRIALDLVGDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 254 ~~~~l~~~L~g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
.++.+++.|. .+..+|| +.+.+++|++|+.+|||||+ +++..|+. ..|+||+||+|
T Consensus 232 ~~~~l~~~l~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~g 308 (337)
T 2z0m_A 232 RVAKLVRLFD--NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTG 308 (337)
T ss_dssp HHHHHHTTCT--TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBC
T ss_pred HHHHHHHHhh--hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccc
Confidence 9999998887 4677887 33566999999999999998 44455554 45899999999
No 15
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.6e-35 Score=287.42 Aligned_cols=263 Identities=18% Similarity=0.214 Sum_probs=198.2
Q ss_pred CcccccCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.+|++++|++++.+.|++ +||..|+|+|.++|+.+++|+|+++++|||+|||+||++|++.. .+.+||++|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~g~~lvi~P 73 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------NGLTVVVSP 73 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------SSEEEEECS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------CCCEEEECC
Confidence 479999999999999998 89999999999999999999999999999999999999999854 357999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH---h-hCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---L-HASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l-~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
+++|+.|+++.++. .++.+..+.|+.+..+.... + ...++|+++||+++........+...++.++|+
T Consensus 74 ~~aL~~q~~~~l~~----~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH 149 (523)
T 1oyw_A 74 LISLMKDQVDQLQA----NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (523)
T ss_dssp CHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred hHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcc
Confidence 99999999999987 47888888888776554322 2 345899999999996433333334456666663
Q ss_pred --------HHHHHhhc---cc--cceeeeecCCChHHHHHh-----hh-cCCcEEEeCC--CceEEEEEecchhhhh---
Q psy18032 188 --------FVKELGKF---TK--LQSTCLLGGDSMDNQFAR-----LH-ASPDIVVATP--GRFLHIVVEMELKLSS--- 243 (333)
Q Consensus 188 --------~i~~l~~~---~~--~~~~~l~~sAT~~~~v~~-----l~-~~~~i~~~t~--~~i~~~~~~~~~k~~~--- 243 (333)
|..++..+ .. ...+++++|||.++.+.. +. ..+.+.+... .++...+.....+...
T Consensus 150 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~ 229 (523)
T 1oyw_A 150 CISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMR 229 (523)
T ss_dssp GGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHH
T ss_pred ccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHHHHHHH
Confidence 11222211 11 247789999999765432 22 3455555432 3455555443333222
Q ss_pred --------HHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCccccc
Q psy18032 244 --------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVL 299 (333)
Q Consensus 244 --------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi 299 (333)
-.+|||++++.++.+++.|. |+.+..+|| +| +.+++|++|+.+|||||+ +++..||
T Consensus 230 ~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI 309 (523)
T 1oyw_A 230 YVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309 (523)
T ss_dssp HHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE
T ss_pred HHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEE
Confidence 25899999999999999997 899999998 23 456999999999999998 4455555
Q ss_pred c-------cccEEEEccCC
Q psy18032 300 E-------GRDVVAMARTG 311 (333)
Q Consensus 300 ~-------~~~~~~~grtG 311 (333)
+ ..|+||+||+|
T Consensus 310 ~~~~p~s~~~y~Qr~GRaG 328 (523)
T 1oyw_A 310 HFDIPRNIESYYQETGRAG 328 (523)
T ss_dssp ESSCCSSHHHHHHHHTTSC
T ss_pred EECCCCCHHHHHHHhcccc
Confidence 4 34999999999
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.2e-35 Score=280.69 Aligned_cols=255 Identities=14% Similarity=0.106 Sum_probs=196.0
Q ss_pred HHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 46 FEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 46 ~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
+++.+.+++ +|| .|+|+|.++++.+++|+|++++||||||||++|++|++..+.. ++++||++||++|+.|++
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-----~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-----GKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-----TCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-----CCEEEEEECCHHHHHHHH
Confidence 345566666 477 5999999999999999999999999999999999999887633 779999999999999999
Q ss_pred HHHHHHhccCCceEEEEECCcch---HHHHHHhhCC-CCEEEECchHHHHHHHhccccccCchhhHH-H-----------
Q psy18032 125 KFVKELGKFTKLQSTCLLGGDSM---DNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYTFK-F----------- 188 (333)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~----------- 188 (333)
+.++.++. .++++..++|+.+. ..+...+..+ ++|+|+||+++.+++.. +.+.+++++|+ .
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchh
Confidence 99999988 89999999999987 5555666665 99999999999887764 55667777774 1
Q ss_pred -------------HHHHhhccc-----------cceeeeecCCC-hHHHHH-----hhhc-CCcEEEeCCCceEEEEEec
Q psy18032 189 -------------VKELGKFTK-----------LQSTCLLGGDS-MDNQFA-----RLHA-SPDIVVATPGRFLHIVVEM 237 (333)
Q Consensus 189 -------------i~~l~~~~~-----------~~~~~l~~sAT-~~~~v~-----~l~~-~~~i~~~t~~~i~~~~~~~ 237 (333)
+..+...++ ...|++++||| .++.+. .+.. ........+.++.+.+...
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 238 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISS 238 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESS
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeecc
Confidence 222223333 67899999999 443322 1211 1111112345666666544
Q ss_pred chhhh----------hHHHHhhcchhhHHHHHHHhc--CCCcc-cccc-chHHHhhhCCCCcccccc----cc-------
Q psy18032 238 ELKLS----------SIQLSLTDFKQDTSRIALDLV--GDSTE-MIHK-QRQSVRKWDPAKKKYVQV----TD------- 292 (333)
Q Consensus 238 ~~k~~----------~l~lif~~~~~~~~~l~~~L~--g~~~~-~lh~-~r~~l~~f~~g~~~vLva----Td------- 292 (333)
+ +.. .-.+|||++++.|+.++..|. |+++. .+|| +|+ +++|++|+++|||| ||
T Consensus 239 ~-~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~-~~~f~~g~~~vLvat~s~T~~~~~GiD 316 (414)
T 3oiy_A 239 R-SKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN-FEDFKVGKINILIGVQAYYGKLTRGVD 316 (414)
T ss_dssp C-CHHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHH-HHHHHTTSCSEEEEECCTTCCCCCCCC
T ss_pred C-HHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchH-HHHHhCCCCeEEEEecCcCchhhccCc
Confidence 2 111 125899999999999999997 89998 9999 556 99999999999999 88
Q ss_pred -CC-cccccc---------cccEEEEccCC
Q psy18032 293 -DT-IPLVLE---------GRDVVAMARTG 311 (333)
Q Consensus 293 -~~-i~~vi~---------~~~~~~~grtG 311 (333)
++ ++.||+ ..|+||+||+|
T Consensus 317 ip~~v~~VI~~~~p~~~~~~~y~qr~GR~g 346 (414)
T 3oiy_A 317 LPERIKYVIFWGTPSGPDVYTYIQASGRSS 346 (414)
T ss_dssp CTTTCCEEEEESCCTTTCHHHHHHHHGGGC
T ss_pred cccccCEEEEECCCCCCCHHHHHHHhCccc
Confidence 44 556663 36999999999
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.2e-34 Score=284.29 Aligned_cols=261 Identities=16% Similarity=0.178 Sum_probs=193.7
Q ss_pred cccccCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 38 GFQSFGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 38 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
.++++++++++.+.|++ +||..|+|+|.++|+.+++|+|+++++|||+|||+||++|++.. ++++|||+|+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------~g~~lVisP~ 93 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------DGFTLVICPL 93 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------SSEEEEECSC
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------CCcEEEEeCH
Confidence 34568999999999998 69999999999999999999999999999999999999999863 4589999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh------hCCCCEEEECchHHH------HHHHhccccccCchh
Q psy18032 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL------HASPDIVVATPGRFL------HIVVEMELKLSSIQY 184 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l------~~~~~IlI~TP~rll------~~l~~~~~~~~~l~~ 184 (333)
++|+.|+++.++.+ |+.+..+.|+.+..+..... ..+++|+|+||++|. +.+. ....+..+.+
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~~~~~~i~~ 168 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KAYEARRFTR 168 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HHHHTTCEEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hhhhccCCcE
Confidence 99999999999985 78888888888766554332 346899999999874 2222 2334556666
Q ss_pred hHH------------HHHHHhhc-----cccceeeeecCCChHHHHHhh----h--cCCcEEEeC--CCceEEEEEecch
Q psy18032 185 TFK------------FVKELGKF-----TKLQSTCLLGGDSMDNQFARL----H--ASPDIVVAT--PGRFLHIVVEMEL 239 (333)
Q Consensus 185 lV~------------~i~~l~~~-----~~~~~~~l~~sAT~~~~v~~l----~--~~~~i~~~t--~~~i~~~~~~~~~ 239 (333)
+|+ |..++..+ .....+++++|||+++.+... . ..+.++... ..++.+.+.....
T Consensus 169 iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~ 248 (591)
T 2v1x_A 169 IAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPS 248 (591)
T ss_dssp EEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCS
T ss_pred EEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCC
Confidence 663 11111110 012578999999998765332 2 223333332 2345544443211
Q ss_pred ----hhh------------hHHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc---
Q psy18032 240 ----KLS------------SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--- 292 (333)
Q Consensus 240 ----k~~------------~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--- 292 (333)
+.. .-.+|||++++.++.+++.|. |+.+..+|| +++.+++|++|+.+|||||+
T Consensus 249 ~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~ 328 (591)
T 2v1x_A 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFG 328 (591)
T ss_dssp SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSC
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 111 115899999999999999996 899999998 33556999999999999998
Q ss_pred -----CCcccccc-------cccEEEEccCC
Q psy18032 293 -----DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 293 -----~~i~~vi~-------~~~~~~~grtG 311 (333)
+++..||+ ..|+||+||+|
T Consensus 329 ~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaG 359 (591)
T 2v1x_A 329 MGIDKPDVRFVIHHSMSKSMENYYQESGRAG 359 (591)
T ss_dssp TTCCCSCEEEEEESSCCSSHHHHHHHHTTSC
T ss_pred cCCCcccccEEEEeCCCCCHHHHHHHhccCC
Confidence 34445553 34999999999
No 18
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.9e-33 Score=246.84 Aligned_cols=189 Identities=27% Similarity=0.434 Sum_probs=166.8
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc---cc
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA---AT 105 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~ 105 (333)
+...+++..+|+++++++.+++++.++||..|+++|.++++.+++|+|++++||||||||++|++|++..+...+ ..
T Consensus 21 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~ 100 (242)
T 3fe2_A 21 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 100 (242)
T ss_dssp SSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTT
T ss_pred CCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccC
Confidence 344577889999999999999999999999999999999999999999999999999999999999999987532 13
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhh
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~l 185 (333)
.++++||++||++|+.|+++.++.++...++++..++||.+...+...+.++++|+|+||+++.+++..+...+++++++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~l 180 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 180 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEE
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEE
Confidence 47789999999999999999999999889999999999999988888888899999999999999999888889999999
Q ss_pred HH-------------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 186 FK-------------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 186 V~-------------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
|+ .+..+.+.++...|++++|||+++.+..+.
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~ 225 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLA 225 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHH
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHH
Confidence 85 222233444567899999999998876654
No 19
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=249.63 Aligned_cols=186 Identities=26% Similarity=0.452 Sum_probs=156.1
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~l 111 (333)
....+|++++|++.++++|.++||..||++|.++||.++.| +|++++||||||||++|++|+++++... ..++++|
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--~~~~~~l 166 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCL 166 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEE
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--CCCceEE
Confidence 35679999999999999999999999999999999999998 9999999999999999999999998763 3467999
Q ss_pred EEcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchhhHH--
Q psy18032 112 ILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQYTFK-- 187 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~lV~-- 187 (333)
|++||++||.|+++.++.++... ++.+..++|+....... ..+++|+|+||++|++++.+ +.+.+++++++|+
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 99999999999999999998764 78888888887654422 45789999999999999966 5678899999995
Q ss_pred ---------H---HHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEE
Q psy18032 188 ---------F---VKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVV 224 (333)
Q Consensus 188 ---------~---i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~ 224 (333)
+ +..+.+.++..+|+++||||+++.+..+. ++|.++.
T Consensus 244 ad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~ 296 (300)
T 3fmo_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 296 (300)
T ss_dssp HHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEE
T ss_pred HHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEE
Confidence 1 11233445667999999999998877654 4555443
No 20
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.2e-34 Score=296.43 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=182.1
Q ss_pred HHHHHH-hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 48 VLKGVL-KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 48 l~~~l~-~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
+.+.+. .+||+ |||+|.+++|.+++|+|++++||||||||++|+++++..+.. ++++||++||++||.|+++.
T Consensus 67 ~~~~~~~~~gf~-pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-----~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 67 FRSFFKKKFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-----GKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HHHHHHHHSSSC-CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-----TCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-----CCeEEEEechHHHHHHHHHH
Confidence 344444 47895 999999999999999999999999999999999998887743 77999999999999999999
Q ss_pred HHHHhccCCceEEEEECCcch---HHHHHHhhCC-CCEEEECchHHHHHHHhccccccCchhhHH-H-------------
Q psy18032 127 VKELGKFTKLQSTCLLGGDSM---DNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYTFK-F------------- 188 (333)
Q Consensus 127 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~------------- 188 (333)
++.++ ..++++..++|+.+. .++...+.++ ++|+|+||++|++++.. +.+++++++|+ .
T Consensus 141 l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 141 LQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchh
Confidence 99987 778999999999987 6666777766 99999999999888764 56677787775 1
Q ss_pred -----------HHHHhhccc-----------cceeeeecCCC-hHHHHH-----hhhc-CCcEEEeCCCceEEEEEecch
Q psy18032 189 -----------VKELGKFTK-----------LQSTCLLGGDS-MDNQFA-----RLHA-SPDIVVATPGRFLHIVVEMEL 239 (333)
Q Consensus 189 -----------i~~l~~~~~-----------~~~~~l~~sAT-~~~~v~-----~l~~-~~~i~~~t~~~i~~~~~~~~~ 239 (333)
+..+.+.++ ...|++++||| .++.+. .... .......++.++.+.+...+
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~~- 296 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSR- 296 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESCC-
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEecC-
Confidence 122223333 67899999999 443322 1111 11111124556777776543
Q ss_pred hhhh----------HHHHhhcchhhHHHHHHHhc--CCCcc-cccc-chHHHhhhCCCCcccccc----cc
Q psy18032 240 KLSS----------IQLSLTDFKQDTSRIALDLV--GDSTE-MIHK-QRQSVRKWDPAKKKYVQV----TD 292 (333)
Q Consensus 240 k~~~----------l~lif~~~~~~~~~l~~~L~--g~~~~-~lh~-~r~~l~~f~~g~~~vLva----Td 292 (333)
+... -.+|||++++.++.++..|. |+++. .+|| +++ +++|++|+++|||| ||
T Consensus 297 k~~~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 297 SKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp CHHHHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHH-HHHHHCCCCCEEEEecCCCC
Confidence 2221 25899999999999999996 89998 9999 456 99999999999999 88
No 21
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-32 Score=236.77 Aligned_cols=189 Identities=27% Similarity=0.476 Sum_probs=159.9
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.++|++++++++++++++++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..++++||++|
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~P 80 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--RAEVQAVITAP 80 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--cCCceEEEEcC
Confidence 4689999999999999999999999999999999999999999999999999999999999998752 34678999999
Q ss_pred cHHHHHHHHHHHHHHhccC----CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 116 TRELALQTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
|++|+.|+++.+++++... ++.+..++|+.+...+.+.+.++++|+|+||+++.+++..+.+.+++++++|+
T Consensus 81 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 81 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 160 (219)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH
T ss_pred cHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch
Confidence 9999999999999988766 78899999998877766666678999999999999999988888889998885
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhh----hcCCcEEEeC
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVAT 226 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l----~~~~~i~~~t 226 (333)
.+..+...++...|++++|||+++.+..+ .++|..+...
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 22233344556789999999998765544 4566555443
No 22
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-34 Score=276.38 Aligned_cols=270 Identities=18% Similarity=0.307 Sum_probs=184.3
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
...|...++++++++.+.+.||..|+++|.++++.+++| +|+++++|||||||++|++|++..+... ..++++||+
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~--~~~~~vLvl 195 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--VPKPQAICL 195 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT--CCSCCEEEE
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC--CCCceEEEE
Confidence 345677789999999999999999999999999999998 9999999999999999999999998763 335689999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-H----
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-F---- 188 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~---- 188 (333)
+|+++|+.|+++.++.++...++.+....++..... ...+++|+|+||+++.+.+....+.+++++++|+ .
T Consensus 196 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~ 271 (508)
T 3fho_A 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNM 271 (508)
T ss_dssp CSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHH
T ss_pred ECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhh
Confidence 999999999999999998877777766666554332 2336899999999999999988888899999885 1
Q ss_pred ---------HHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEeC-----CCceEEEEEec---chhhhh----
Q psy18032 189 ---------VKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVAT-----PGRFLHIVVEM---ELKLSS---- 243 (333)
Q Consensus 189 ---------i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~t-----~~~i~~~~~~~---~~k~~~---- 243 (333)
...+....+...|++++|||+++.+..+. ..+..+... +..+.+.+... ..+...
T Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l 351 (508)
T 3fho_A 272 LDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVEL 351 (508)
T ss_dssp TTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHH
Confidence 11233334567899999999986655442 333222211 11223333221 222221
Q ss_pred -------HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc
Q psy18032 244 -------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE 300 (333)
Q Consensus 244 -------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~ 300 (333)
-.+|||++++.|+.+++.|. ++.+..+|| +++.++.|++|+.+|||||+ +++..|+.
T Consensus 352 l~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 352 YGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp HC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred HHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 15899999999999999997 788999998 33556999999999999998 45666663
Q ss_pred -------------cccEEEEccCC
Q psy18032 301 -------------GRDVVAMARTG 311 (333)
Q Consensus 301 -------------~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 432 ~~~p~~~~~~~s~~~~~Qr~GRag 455 (508)
T 3fho_A 432 YDMPLDQAGRPDPQTYLHRIGRTG 455 (508)
T ss_dssp ----CC-----CTHHHHHTTSCCC
T ss_pred ECCCCcccCCCCHHHHHHHhhhcC
Confidence 25889999999
No 23
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=7.2e-32 Score=237.77 Aligned_cols=185 Identities=31% Similarity=0.489 Sum_probs=160.6
Q ss_pred ccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceE
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRA 110 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 110 (333)
.......+|++++++++++++|+++||..|+++|.++++.+++|+|++++||||||||++|++|++..+... ..++++
T Consensus 37 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~--~~~~~~ 114 (249)
T 3ber_A 37 VEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET--PQRLFA 114 (249)
T ss_dssp HHHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CCSSCE
T ss_pred CcccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--CCCceE
Confidence 344556789999999999999999999999999999999999999999999999999999999999988763 336789
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchhhHH--
Q psy18032 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQYTFK-- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~lV~-- 187 (333)
||++||++|+.|+++.++.++...++++..++|+.....+...+.++++|+|+||+++.+.+.. +.+.+++++++|+
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999999988889999999999988887777888999999999999998876 5567888888885
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+...++...|++++|||+++.+.++.
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~ 235 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQ 235 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHH
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHH
Confidence 122333444567899999999998876653
No 24
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.4e-32 Score=235.78 Aligned_cols=188 Identities=28% Similarity=0.483 Sum_probs=156.1
Q ss_pred CcccccCCCcccc-cCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc----
Q psy18032 29 GDKKKKMGGGFQS-FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA---- 103 (333)
Q Consensus 29 ~~~~~~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~---- 103 (333)
....+++..+|++ +++++++++++.++||..|+++|.++++.+++|+|++++||||||||++|++|++..+....
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4455678899999 89999999999999999999999999999999999999999999999999999999876421
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCch
Q psy18032 104 ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183 (333)
Q Consensus 104 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~ 183 (333)
...++++||++||++|+.|+++.++.+. ..++++..++|+.....+...+.++++|+|+||+++.+++......+++++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 2357889999999999999999999986 468899999999988888888888999999999999999998888899999
Q ss_pred hhHH-------------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 184 YTFK-------------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 184 ~lV~-------------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
++|+ .+..+....+...|++++|||+++.+.++.
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 216 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLA 216 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHH
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHH
Confidence 9885 122233334567899999999998877664
No 25
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-31 Score=229.50 Aligned_cols=180 Identities=29% Similarity=0.560 Sum_probs=157.7
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.++|++++|+++++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+... ..++++||++|
T Consensus 2 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P 79 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIVP 79 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--CCCeeEEEEeC
Confidence 3579999999999999999999999999999999999999999999999999999999999987652 34678999999
Q ss_pred cHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------
Q psy18032 116 TRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------- 187 (333)
|++|+.|+++.++.+.... ++++..+.|+....++...+.++++|+|+||+++.+.+.++...+++++++|+
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 159 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL 159 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHT
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhH
Confidence 9999999999999998776 78999999999988887888888999999999999999988888889999885
Q ss_pred ------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+...++...|.+++|||+++.+..+.
T Consensus 160 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 195 (206)
T 1vec_A 160 SQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 195 (206)
T ss_dssp STTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHH
T ss_pred hhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHH
Confidence 222333334557899999999988776543
No 26
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.98 E-value=6.5e-32 Score=236.29 Aligned_cols=185 Identities=29% Similarity=0.472 Sum_probs=148.8
Q ss_pred ccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceE
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRA 110 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 110 (333)
+.++...+|++++++++++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..++++
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--~~~~~~ 101 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--FKETQA 101 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--SCSCCE
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceE
Confidence 344567899999999999999999999999999999999999999999999999999999999999988652 246799
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCC-CCEEEECchHHHHHHHhccccccCchhhHH--
Q psy18032 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYTFK-- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-- 187 (333)
||++||++|+.|+++.++.++...++.+..++|+.....+...+..+ ++|+|+||+++.+++..+.+.++.++++|+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 102 LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred EEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 99999999999999999999988899999999998877776666665 999999999999999988888888998885
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+.+.++...|++++|||+++.+..+.
T Consensus 182 ah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 222 (237)
T 3bor_A 182 ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT 222 (237)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHH
T ss_pred chHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHH
Confidence 122233334567899999999988776553
No 27
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.3e-31 Score=237.94 Aligned_cols=184 Identities=33% Similarity=0.454 Sum_probs=155.9
Q ss_pred cCCCcccccC--CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc--ccCCce
Q psy18032 34 KMGGGFQSFG--LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA--ATSGVR 109 (333)
Q Consensus 34 ~~~~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~ 109 (333)
....+|++++ ++++++++++++||..|+++|.++++.++.|+|++++||||||||++|++|+++.+.... ...+++
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 128 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTG 128 (262)
T ss_dssp SGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred cccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCce
Confidence 3445778877 999999999999999999999999999999999999999999999999999999887532 224778
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cccccCchhhHH-
Q psy18032 110 ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQYTFK- 187 (333)
Q Consensus 110 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~- 187 (333)
+||++||++|+.|+++.+++++...+..+..++|+.....+...+..+++|+|+||+++.+++... .+.+++++++|+
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 999999999999999999999988899999999999988888888888999999999999888765 367888888885
Q ss_pred ------------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ------------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ------------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+.+.++...|++++|||+++.+..+.
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~ 250 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLA 250 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHH
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHH
Confidence 223344445667899999999998887764
No 28
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.98 E-value=6.3e-32 Score=238.55 Aligned_cols=183 Identities=32% Similarity=0.521 Sum_probs=159.5
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-------ccCC
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-------ATSG 107 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-------~~~~ 107 (333)
+..+|++++|+++++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.... ...+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 567899999999999999999999999999999999999999999999999999999999999987532 1235
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 108 VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 108 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
+++||++||++|+.|+++.++.++...++.+..++|+.+...+...+..+++|+|+||+++.+++..+.+.+++++++|+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 79999999999999999999999888899999999999988888888888999999999999999998888899999885
Q ss_pred ----------HHHHHhhcc-----cc--ceeeeecCCChHHHHHhhh
Q psy18032 188 ----------FVKELGKFT-----KL--QSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ----------~i~~l~~~~-----~~--~~~~l~~sAT~~~~v~~l~ 217 (333)
|..++..++ +. ..|++++|||+++.+..+.
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~ 227 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLA 227 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHH
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHH
Confidence 222233222 22 6789999999998876654
No 29
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.98 E-value=2.6e-31 Score=231.39 Aligned_cols=186 Identities=27% Similarity=0.384 Sum_probs=153.8
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCc
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGV 108 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 108 (333)
.+..+....+|++++++++++++|+++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+... ..++
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~ 93 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE--NLST 93 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSC
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCc
Confidence 44455667899999999999999999999999999999999999999999999999999999999999988652 2367
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 109 RALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
++||++||++|+.|+++.++.++... ++++..+.|+....++...+ ++++|+|+||+++.+++..+.+.+++++++|+
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 99999999999999999999987665 88999999998877765555 46999999999999999888888888888885
Q ss_pred -H-------------HHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -F-------------VKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -~-------------i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
+ +..+...++...|++++|||+++.+..+.
T Consensus 173 DEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~ 216 (230)
T 2oxc_A 173 DEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANAL 216 (230)
T ss_dssp SSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHH
T ss_pred CCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHH
Confidence 1 11222334557899999999998876654
No 30
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.98 E-value=1.1e-32 Score=272.75 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=107.2
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.+|| +|+|+|..++|.++.|+ +++++||+|||++|.+|++..... ++.++||+||++||.|..+++..++++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-----g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-----GKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-----SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 5799 89999999999999999 999999999999999999855433 568999999999999999999999999
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc------cccccCchhhHH
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM------ELKLSSIQYTFK 187 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~------~~~~~~l~~lV~ 187 (333)
+|+++.+++||.+...+ ....+|+|+|+||++| .+++... .+.++.++++|+
T Consensus 151 lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp TTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred cCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEE
Confidence 99999999999876553 3334799999999999 5665543 466788888885
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.97 E-value=2.7e-32 Score=274.80 Aligned_cols=264 Identities=17% Similarity=0.241 Sum_probs=197.9
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
++|++++|++++.+.+++.||..|+|+|.++++. +.+++|++++||||||||++|.+|++..+... +++++|++|
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~~l~i~P 76 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVYIVP 76 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----CSEEEEECS
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----CCEEEEEcC
Confidence 5799999999999999999999999999999999 88999999999999999999999999888742 579999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh--
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG-- 193 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~-- 193 (333)
+++|+.|+++.++.+.. .|+++..++|+...... ...+++|+|+||+++..++.+....+++++++|+ |+.+
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi--DE~H~l 150 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVA--DEIHLI 150 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEE--ETGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEE--ECCccc
Confidence 99999999999976654 48999999998765442 1236899999999999988887666888888884 3332
Q ss_pred -------------hccccceeeeecCCChH--HHHHhhhcCCcEEEe--CCCceEEEEE--------e-----cchhhh-
Q psy18032 194 -------------KFTKLQSTCLLGGDSMD--NQFARLHASPDIVVA--TPGRFLHIVV--------E-----MELKLS- 242 (333)
Q Consensus 194 -------------~~~~~~~~~l~~sAT~~--~~v~~l~~~~~i~~~--t~~~i~~~~~--------~-----~~~k~~- 242 (333)
..++...+++++|||++ +.+..+.... .+.. .|-.+...+. . ......
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~~~~~~~l~~~-~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLNAE-LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCHHHHHHHTTEE-EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCHHHHHHHhCCc-ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 12223689999999985 4555543221 1111 1111111110 0 011111
Q ss_pred --------hHHHHhhcchhhHHHHHHHhcC-----------------------------------CCcccccc-----ch
Q psy18032 243 --------SIQLSLTDFKQDTSRIALDLVG-----------------------------------DSTEMIHK-----QR 274 (333)
Q Consensus 243 --------~l~lif~~~~~~~~~l~~~L~g-----------------------------------~~~~~lh~-----~r 274 (333)
.-.+|||+++++++.++..|.. ..+..+|| +|
T Consensus 230 ~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 309 (720)
T 2zj8_A 230 VYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDER 309 (720)
T ss_dssp HHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHH
Confidence 1258999999999999877741 13677887 33
Q ss_pred -HHHhhhCCCCcccccccc--------CCcccccc---------------cccEEEEccCC
Q psy18032 275 -QSVRKWDPAKKKYVQVTD--------DTIPLVLE---------------GRDVVAMARTG 311 (333)
Q Consensus 275 -~~l~~f~~g~~~vLvaTd--------~~i~~vi~---------------~~~~~~~grtG 311 (333)
..++.|++|+++|||||+ +++..||+ ..|+||+||+|
T Consensus 310 ~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaG 370 (720)
T 2zj8_A 310 VLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAG 370 (720)
T ss_dssp HHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBC
T ss_pred HHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcC
Confidence 455999999999999998 45555554 23788999999
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.97 E-value=8.2e-32 Score=271.12 Aligned_cols=267 Identities=18% Similarity=0.214 Sum_probs=197.7
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
..++|++++|++++.+.+++.||..|+|+|.++++. +.+++|++++||||||||++|.+|+++.+.. .+++++|+
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~il~i 81 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK----NGGKAIYV 81 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH----SCSEEEEE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH----CCCeEEEE
Confidence 347899999999999999999999999999999999 8889999999999999999999999998774 26799999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG 193 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~ 193 (333)
+|+++|+.|+++.++.+.. .|+++...+|+....+. .+ .+++|+|+||+++..++.+....+++++++|+ |+.+
T Consensus 82 ~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi--DE~H 155 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVL--DELH 155 (715)
T ss_dssp CSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEE--CSGG
T ss_pred eCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEE--echh
Confidence 9999999999999965543 58999999988765442 12 36899999999999998887666888888884 3322
Q ss_pred hcc------------c--cceeeeecCCChH--HHHHhhhcCCcEEEe-CCCceEEEE--------------Ee------
Q psy18032 194 KFT------------K--LQSTCLLGGDSMD--NQFARLHASPDIVVA-TPGRFLHIV--------------VE------ 236 (333)
Q Consensus 194 ~~~------------~--~~~~~l~~sAT~~--~~v~~l~~~~~i~~~-t~~~i~~~~--------------~~------ 236 (333)
.+. . ...+++++|||++ +.+..+...+.+... .|-.+...+ ..
T Consensus 156 ~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAKRRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKV 235 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred hcCCcccchHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhc
Confidence 211 0 1688999999985 445554432111100 111111111 00
Q ss_pred --cchhhh---------hHHHHhhcchhhHHHHHHHhcC--------------------------------------CCc
Q psy18032 237 --MELKLS---------SIQLSLTDFKQDTSRIALDLVG--------------------------------------DST 267 (333)
Q Consensus 237 --~~~k~~---------~l~lif~~~~~~~~~l~~~L~g--------------------------------------~~~ 267 (333)
...... .-.+|||+++++++.++..|.. ..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 236 HGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp ESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred ccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCE
Confidence 011111 1258999999999999988751 136
Q ss_pred ccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc------------------cccEEEEccCC
Q psy18032 268 EMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE------------------GRDVVAMARTG 311 (333)
Q Consensus 268 ~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~------------------~~~~~~~grtG 311 (333)
..+|| +| ..++.|++|+++|||||+ +++..||+ ..|.||+||+|
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaG 391 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAG 391 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBC
T ss_pred EEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcC
Confidence 77887 34 445889999999999998 45555554 24778999999
No 33
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.97 E-value=7.6e-33 Score=278.01 Aligned_cols=263 Identities=15% Similarity=0.167 Sum_probs=194.3
Q ss_pred CcccccC--CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 37 GGFQSFG--LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 37 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
++|++++ |++++.+.+++.||+.|+|+|.++++.+.+++|++++||||||||++|.+|++..+.. +++++|++
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~ 75 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVV 75 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEe
Confidence 5799999 9999999999999999999999999999999999999999999999999999998765 56899999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhh
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGK 194 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~ 194 (333)
|+++|+.|+++.++.+.. .|+++...+|+....+. ...+++|+|+||+++..++.+....+++++++|+ |+.+.
T Consensus 76 P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi--DE~H~ 149 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV--DEIHL 149 (702)
T ss_dssp SSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE--TTGGG
T ss_pred CcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE--eeeee
Confidence 999999999999965543 58999999998765442 1236899999999999998887666888888884 33222
Q ss_pred c------------------cccceeeeecCCChH--HHHHhhhcCCcEEEe--CCCceEEEE--------Eecch-----
Q psy18032 195 F------------------TKLQSTCLLGGDSMD--NQFARLHASPDIVVA--TPGRFLHIV--------VEMEL----- 239 (333)
Q Consensus 195 ~------------------~~~~~~~l~~sAT~~--~~v~~l~~~~~i~~~--t~~~i~~~~--------~~~~~----- 239 (333)
+ .....+++++|||++ ..+..+...+ ++.. .|-.+...+ .....
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~~-~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDAD-YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCE-EEECCCCSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhCCC-cccCCCCCccceEEEeeCCeeeccCcchhhhhh
Confidence 1 134689999999986 3444443322 1111 111111111 11000
Q ss_pred --hhh---------hHHHHhhcchhhHHHHHHHhcC--------------------------------CCcccccc----
Q psy18032 240 --KLS---------SIQLSLTDFKQDTSRIALDLVG--------------------------------DSTEMIHK---- 272 (333)
Q Consensus 240 --k~~---------~l~lif~~~~~~~~~l~~~L~g--------------------------------~~~~~lh~---- 272 (333)
... .-.+|||+++++++.++..|.. ..+..+||
T Consensus 229 ~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 308 (702)
T 2p6r_A 229 VKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 308 (702)
T ss_dssp CCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCH
Confidence 111 1258999999999999877741 24677887
Q ss_pred -chH-HHhhhCCCCcccccccc--------CCcccccc--------------cccEEEEccCC
Q psy18032 273 -QRQ-SVRKWDPAKKKYVQVTD--------DTIPLVLE--------------GRDVVAMARTG 311 (333)
Q Consensus 273 -~r~-~l~~f~~g~~~vLvaTd--------~~i~~vi~--------------~~~~~~~grtG 311 (333)
+|+ .++.|++|+++|||||+ +++..||+ ..|+||+||+|
T Consensus 309 ~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 309 GQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBS
T ss_pred HHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcC
Confidence 343 45889999999999998 44455554 24889999999
No 34
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=7.2e-31 Score=227.39 Aligned_cols=183 Identities=30% Similarity=0.455 Sum_probs=150.8
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEE
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~l 111 (333)
-++...+|+++++++.+++.+.++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..++++|
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--~~~~~~l 86 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQAL 86 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEE
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--CCCceEE
Confidence 34566889999999999999999999999999999999999999999999999999999999999988652 3467999
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
|++|+++|+.|+++.++.++...++++..+.|+.+..++...+.+ ++|+|+||+++.+.+..+...+++++++|+
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 87 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 999999999999999999988889999999999887776665554 999999999999999988888888988885
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+...++...|.+++|||+++.+..+.
T Consensus 166 ~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~ 204 (224)
T 1qde_A 166 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVT 204 (224)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHH
Confidence 122333344567899999999988776543
No 35
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-32 Score=285.46 Aligned_cols=269 Identities=16% Similarity=0.174 Sum_probs=199.6
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
...|+.+++++.+...+...++-.|+|+|.++++.+.+|+|++++||||||||++|.+|++..+.. ++++||++|
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----g~rvlvl~P 235 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSP 235 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----TCEEEEEES
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----CCeEEEEcC
Confidence 347888888888877776666667999999999999999999999999999999999999998865 679999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--------
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------- 187 (333)
|++|++|+++.++.++. .+..++|+.+.. .+++|+|+||++|.+++.++...+++++++|+
T Consensus 236 traLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp SHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred cHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 99999999999998654 577788887643 36899999999999999988877888888885
Q ss_pred -----HHHHHhhccccceeeeecCCChHH--HHHhh----hcCCcEEEeC---CCceEEEEEec----------------
Q psy18032 188 -----FVKELGKFTKLQSTCLLGGDSMDN--QFARL----HASPDIVVAT---PGRFLHIVVEM---------------- 237 (333)
Q Consensus 188 -----~i~~l~~~~~~~~~~l~~sAT~~~--~v~~l----~~~~~i~~~t---~~~i~~~~~~~---------------- 237 (333)
.+..+...++...|++++|||+++ ++..+ ...+..++.+ |..+.+++...
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~ 384 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFR 384 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEEC
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchh
Confidence 234444556778999999999864 33333 2333333221 22233332110
Q ss_pred -----------------------------------------chhhhh-----------HHHHhhcchhhHHHHHHHhcC-
Q psy18032 238 -----------------------------------------ELKLSS-----------IQLSLTDFKQDTSRIALDLVG- 264 (333)
Q Consensus 238 -----------------------------------------~~k~~~-----------l~lif~~~~~~~~~l~~~L~g- 264 (333)
..+... -++|||++++.|+.++..|..
T Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 385 EENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp HHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred hhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 000000 148899999999999988862
Q ss_pred -CC---------------------------------------cccccc------chHHHhhhCCCCcccccccc------
Q psy18032 265 -DS---------------------------------------TEMIHK------QRQSVRKWDPAKKKYVQVTD------ 292 (333)
Q Consensus 265 -~~---------------------------------------~~~lh~------~r~~l~~f~~g~~~vLvaTd------ 292 (333)
+. +..+|| +...++.|++|+++|||||+
T Consensus 465 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GI 544 (1108)
T 3l9o_A 465 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 544 (1108)
T ss_dssp HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCC
T ss_pred cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCC
Confidence 22 467887 33456999999999999999
Q ss_pred --CCcccccc---------------cccEEEEccCC-Cc---hhhHHHh
Q psy18032 293 --DTIPLVLE---------------GRDVVAMARTG-SG---KTACFLF 320 (333)
Q Consensus 293 --~~i~~vi~---------------~~~~~~~grtG-~g---~~~~~~l 320 (333)
+++..||+ +.|+||+||+| .| ...++++
T Consensus 545 DiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill 593 (1108)
T 3l9o_A 545 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 593 (1108)
T ss_dssp CC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEE
T ss_pred CCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEE
Confidence 55666774 12889999999 44 4444443
No 36
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=225.52 Aligned_cols=184 Identities=33% Similarity=0.522 Sum_probs=154.1
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc--ccCCceE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA--ATSGVRA 110 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~ 110 (333)
.+...+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+.... ...++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 35567899999999999999999999999999999999999999999999999999999999999886532 1246789
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cccccCchhhHH--
Q psy18032 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQYTFK-- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~-- 187 (333)
||++||++|+.|+++.++.++...++.+..++|+.+...+...+ .+++|+|+||+++.+.+... .+.+++++++|+
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999888889999999998877665555 47999999999999888765 467788888885
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+...++...|++++|||+++.+..+.
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 220 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLA 220 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHH
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHH
Confidence 112233334567899999999998876654
No 37
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1.6e-31 Score=268.21 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=132.1
Q ss_pred HHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 49 LKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 49 ~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
.+++..+||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+...+...++++||++||++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999998876443334789999999999999999999
Q ss_pred HHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc-cccCchhhHHHHHHHhh-------------
Q psy18032 129 ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYTFKFVKELGK------------- 194 (333)
Q Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~-~~~~l~~lV~~i~~l~~------------- 194 (333)
+++...++++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+++++++|+ |+.+.
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vVi--DEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF--DECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEE--ETGGGCSTTCHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEE--eCCCcccCcccHHHHHHH
Confidence 9988789999999999877666666667899999999999999998877 7888999984 33322
Q ss_pred --------ccccceeeeecCCChH
Q psy18032 195 --------FTKLQSTCLLGGDSMD 210 (333)
Q Consensus 195 --------~~~~~~~~l~~sAT~~ 210 (333)
..+...+.+++|||..
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccc
Confidence 1134578999999974
No 38
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=2.9e-30 Score=220.69 Aligned_cols=179 Identities=36% Similarity=0.503 Sum_probs=154.2
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~P 115 (333)
++|+++++++++++.+++.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++||++|
T Consensus 1 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 4799999999999999999999999999999999999999999999999999999999999986432 134679999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--------
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------- 187 (333)
+++|+.|+++.++.+... +++..++|+.....+...+.++++|+|+||+++.+++..+.+.+++++++|+
T Consensus 81 ~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 81 TRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp SHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 999999999999998653 7788899998887777777788999999999999999988888899999885
Q ss_pred -----HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -----FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -----~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+....+...|.+++|||+++.+..+.
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 193 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLA 193 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHH
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHH
Confidence 222233334567899999999988766543
No 39
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=3.3e-30 Score=222.65 Aligned_cols=182 Identities=28% Similarity=0.489 Sum_probs=152.9
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
....++|++++|+++++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++||
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--~~~~~~li 87 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLV 87 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEE
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--CCCEEEEE
Confidence 3445689999999999999999999999999999999999999999999999999999999999987652 23568999
Q ss_pred EcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH---
Q psy18032 113 LSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK--- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~--- 187 (333)
++||++|+.|+++.++++.... ++++..+.|+.+...+...+.+ .++|+|+||+++.+++....+.+++++++|+
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 9999999999999999988765 8999999999888777666655 4799999999999999988888889998885
Q ss_pred --------HHHH---HhhccccceeeeecCCChHHHHHhh
Q psy18032 188 --------FVKE---LGKFTKLQSTCLLGGDSMDNQFARL 216 (333)
Q Consensus 188 --------~i~~---l~~~~~~~~~~l~~sAT~~~~v~~l 216 (333)
+... +.+..+...|++++|||+++.+..+
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 207 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV 207 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHH
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHH
Confidence 1122 2233445789999999998665544
No 40
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=2.9e-32 Score=283.13 Aligned_cols=229 Identities=17% Similarity=0.130 Sum_probs=174.6
Q ss_pred HHHH-hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 50 KGVL-KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 50 ~~l~-~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
+.+. .+||. | ++|.++||.+++|+|++++||||||||+ |.+|++..+.. .++++||++||++||.|+++.++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----KGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----TSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----cCCeEEEEeccHHHHHHHHHHHH
Confidence 4444 47999 9 9999999999999999999999999998 99999988765 36799999999999999999999
Q ss_pred HHhccCCc----eEEEEECCcchHHH---HHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-HHHHHhh------
Q psy18032 129 ELGKFTKL----QSTCLLGGDSMDNQ---FARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-FVKELGK------ 194 (333)
Q Consensus 129 ~~~~~~~~----~~~~~~g~~~~~~~---~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~i~~l~~------ 194 (333)
.++...++ ++..++|+.+...+ ...+.+ ++|+|+||++|++++.+ +++++++|+ ..+.+..
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~~~~~~ 195 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVD 195 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTSTHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhccccHH
Confidence 99988888 89999999887663 344555 99999999999988765 668888884 2222111
Q ss_pred -----c----------cccceeeeecCCChHHHHH----hhhcCC-cE----EEeCCCceEEEEEecchhhh--------
Q psy18032 195 -----F----------TKLQSTCLLGGDSMDNQFA----RLHASP-DI----VVATPGRFLHIVVEMELKLS-------- 242 (333)
Q Consensus 195 -----~----------~~~~~~~l~~sAT~~~~v~----~l~~~~-~i----~~~t~~~i~~~~~~~~~k~~-------- 242 (333)
+ .+...|.+++|||++.. . .+...+ .+ ...+...+.+.+.... +..
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~-k~~~L~~ll~~ 273 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDE-SISTLSSILEK 273 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCC-CTTTTHHHHTT
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEechh-HHHHHHHHHhh
Confidence 1 13457889999998754 2 111111 11 1123445666665321 211
Q ss_pred --hHHHHhhcchhhHHHHHHHhcC-CCccccccch-HHHhhhCCCCcccccc----cc
Q psy18032 243 --SIQLSLTDFKQDTSRIALDLVG-DSTEMIHKQR-QSVRKWDPAKKKYVQV----TD 292 (333)
Q Consensus 243 --~l~lif~~~~~~~~~l~~~L~g-~~~~~lh~~r-~~l~~f~~g~~~vLva----Td 292 (333)
.-.+|||++++.|+.+++.|.. +++..+||++ +.+++|++|+++|||| ||
T Consensus 274 ~~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~~~~l~~F~~G~~~VLVaTas~Td 331 (1054)
T 1gku_B 274 LGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYG 331 (1054)
T ss_dssp SCSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHHHTSCSEEEEECC---
T ss_pred cCCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccHHHHHHHHHcCCCcEEEEecCCCC
Confidence 1258999999999999999974 7889999954 6679999999999999 77
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=3.5e-31 Score=258.19 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=128.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
+|+|+|.++++.+++|+|+++++|||||||++|++|+++.+...+...++++||++||++|+.|+++.++.++...++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 49999999999999999999999999999999999999998875444477899999999999999999999988889999
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc-cccCchhhHHHHHHHhhcc---------------------
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYTFKFVKELGKFT--------------------- 196 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~-~~~~l~~lV~~i~~l~~~~--------------------- 196 (333)
..++|+.+...+...+..+++|+|+||+++.+++..+.+ .+.+++++|+ |+.+.+.
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi--DEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIF--DECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE--TTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEE--ECccccCCcchHHHHHHHHHHhhhcccc
Confidence 999999987777667777899999999999999998877 7888999884 3332221
Q ss_pred ccceeeeecCCCh
Q psy18032 197 KLQSTCLLGGDSM 209 (333)
Q Consensus 197 ~~~~~~l~~sAT~ 209 (333)
....+.+++|||.
T Consensus 162 ~~~~~~l~lSAT~ 174 (555)
T 3tbk_A 162 DPLPQVVGLTASV 174 (555)
T ss_dssp SCCCEEEEEESCC
T ss_pred CCCCeEEEEecCc
Confidence 1346899999998
No 42
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=228.39 Aligned_cols=187 Identities=30% Similarity=0.478 Sum_probs=154.3
Q ss_pred cccccCCCccccc----CCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhccc
Q psy18032 30 DKKKKMGGGFQSF----GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAAT 105 (333)
Q Consensus 30 ~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~ 105 (333)
...+.+..+|+++ ++++++++++.++||..|+++|.++++.+++|+|++++||||||||++|++|++..+... ..
T Consensus 18 ~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~ 96 (245)
T 3dkp_A 18 TDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-AN 96 (245)
T ss_dssp SSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-CS
T ss_pred CCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-cc
Confidence 3456677889987 899999999999999999999999999999999999999999999999999999988652 23
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHH-HHhhCCCCEEEECchHHHHHHHhc--cccccCc
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF-ARLHASPDIVVATPGRFLHIVVEM--ELKLSSI 182 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~IlI~TP~rll~~l~~~--~~~~~~l 182 (333)
.++++||++||++|+.|+++.+++++...++++..+.|+....... .....+++|+|+||+++.+++... .+.++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 176 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASV 176 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccC
Confidence 4679999999999999999999999888888888877765443332 223446899999999999999876 4678888
Q ss_pred hhhHH-------------HHHHHhhc----cccceeeeecCCChHHHHHhhh
Q psy18032 183 QYTFK-------------FVKELGKF----TKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 183 ~~lV~-------------~i~~l~~~----~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
+++|+ +.+.+..+ .+...|++++|||+++.+.++.
T Consensus 177 ~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~ 228 (245)
T 3dkp_A 177 EWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWC 228 (245)
T ss_dssp CEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHH
T ss_pred cEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHH
Confidence 88885 22333332 2346899999999998887764
No 43
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=3.7e-31 Score=258.34 Aligned_cols=152 Identities=18% Similarity=0.141 Sum_probs=124.0
Q ss_pred CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
+.-.|+|+|.++++.+++|+|+++++|||||||++|++|+++.+...+...++++||++||++|+.|+++.++.++...+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 34569999999999999999999999999999999999999998875444477999999999999999999999988889
Q ss_pred ceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc-cccCchhhHHHHHHHhhcc------------------
Q psy18032 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYTFKFVKELGKFT------------------ 196 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~-~~~~l~~lV~~i~~l~~~~------------------ 196 (333)
+++..++|+.+...+...+..+++|+|+||+++.+++..+.+ .+.+++++|+ |+.+.+.
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi--DEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF--DECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEE--ETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEE--ECCcccCCcchHHHHHHHHHHhhhc
Confidence 999999999987776667777899999999999999998877 7899999994 3322211
Q ss_pred --ccceeeeecCCCh
Q psy18032 197 --KLQSTCLLGGDSM 209 (333)
Q Consensus 197 --~~~~~~l~~sAT~ 209 (333)
....+.+++|||.
T Consensus 162 ~~~~~~~~l~lSAT~ 176 (556)
T 4a2p_A 162 SASQLPQILGLTASV 176 (556)
T ss_dssp C---CCEEEEEESCC
T ss_pred ccCCCCeEEEEeCCc
Confidence 2347899999998
No 44
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.96 E-value=4.3e-30 Score=261.33 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=126.1
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
-+|+..|+|+|.++++.+++|+|+++++|||||||++|++|++..+...+...++++||++||++|+.|+++.++.++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 45789999999999999999999999999999999999999999988754444779999999999999999999999888
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc-cccCchhhHHHHHHHhhcc----------------
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYTFKFVKELGKFT---------------- 196 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~-~~~~l~~lV~~i~~l~~~~---------------- 196 (333)
.++++..++|+.+...+...+..+++|+|+||+++.+.+..+.+ .+.+++++|+ |+.+.+.
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi--DEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF--DECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE--TTGGGCSTTSHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEE--ECccccCCCccHHHHHHHHHHHh
Confidence 89999999999987777777777899999999999999998877 7888999984 3322211
Q ss_pred ----ccceeeeecCCChH
Q psy18032 197 ----KLQSTCLLGGDSMD 210 (333)
Q Consensus 197 ----~~~~~~l~~sAT~~ 210 (333)
....+.+++|||..
T Consensus 401 ~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVG 418 (797)
T ss_dssp HTTCCCCCEEEEEESCCC
T ss_pred hccCCCCCeEEEEcCCcc
Confidence 23478999999983
No 45
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-29 Score=259.32 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=121.4
Q ss_pred HHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 52 VLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 52 l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
...++|+ |+++|.++++.+.+|+|++++||||||||++|.+|++..+.. +.++||++||++|++|+++.+..+.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-----g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-----CCeEEEECChHHHHHHHHHHHHHHh
Confidence 3456887 999999999999999999999999999999999999988755 6799999999999999999999865
Q ss_pred ccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------------HHHHHhhcccc
Q psy18032 132 KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------------FVKELGKFTKL 198 (333)
Q Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------------~i~~l~~~~~~ 198 (333)
. .+..++|+.+... +++|+|+||++|.+++.++...+++++++|+ ..+.+...++.
T Consensus 154 ~----~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 154 G----DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp S----CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred C----CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 4 6777888876543 5899999999999999888778888999884 23333444566
Q ss_pred ceeeeecCCChHH
Q psy18032 199 QSTCLLGGDSMDN 211 (333)
Q Consensus 199 ~~~~l~~sAT~~~ 211 (333)
..+++++|||+++
T Consensus 223 ~~~il~LSATi~n 235 (1010)
T 2xgj_A 223 KVRYVFLSATIPN 235 (1010)
T ss_dssp TCEEEEEECCCTT
T ss_pred CCeEEEEcCCCCC
Confidence 7899999999974
No 46
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.96 E-value=2.5e-30 Score=255.46 Aligned_cols=123 Identities=21% Similarity=0.174 Sum_probs=107.0
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|. +|+++|..++|.++.|+ ++.++||||||++|.+|++..... +++++|++||++||.|+++.+..+++++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-----g~~vlVltPTreLA~Q~~e~~~~l~~~l 142 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAENNRPLFEFL 142 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-----SSCCEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-----CCcEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 575 69999999999999998 999999999999999999976544 5689999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc------cccccCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM------ELKLSSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~------~~~~~~l~~lV~ 187 (333)
|+++.+++||.+... +.+..+++|+||||++| .+++..+ .+.++.++++|+
T Consensus 143 gl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 143 GLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp TCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEE
T ss_pred CCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEE
Confidence 999999999988653 34445799999999999 6877754 366788888885
No 47
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.7e-29 Score=253.42 Aligned_cols=254 Identities=15% Similarity=0.183 Sum_probs=183.0
Q ss_pred HHHHHHHHhCCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 46 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
+.+.+.+..++| .||++|.++++.++++ +|++++||||||||++|++|++..+.. +.+++|++||++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----g~qvlvlaPtr~L 429 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----GFQTAFMVPTSIL 429 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----TSCEEEECSCHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHH
Confidence 455566678999 7999999999999886 699999999999999999999998876 6799999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCcchHHHH---HHhhC-CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhc
Q psy18032 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKF 195 (333)
Q Consensus 120 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~ 195 (333)
+.|+++.++++....++++..++|+.+..++. ..+.+ .++|+|+||+.+.+ .+.+++++++| +|+.+.+
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVV--IDEaHr~ 502 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVI--IDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEE--EESCCCC
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEE--ecccchh
Confidence 99999999999888899999999998876543 33444 49999999987743 46788889988 4443332
Q ss_pred ----------cccceeeeecCCChHHHHHhhh--cCCcEEEe---CCCc--eEEEEEecchhh------------hhHHH
Q psy18032 196 ----------TKLQSTCLLGGDSMDNQFARLH--ASPDIVVA---TPGR--FLHIVVEMELKL------------SSIQL 246 (333)
Q Consensus 196 ----------~~~~~~~l~~sAT~~~~v~~l~--~~~~i~~~---t~~~--i~~~~~~~~~k~------------~~l~l 246 (333)
.....+++++|||..+....+. ...++.+. .+++ +...+....... ..-.+
T Consensus 503 g~~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvl 582 (780)
T 1gm5_A 503 GVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAF 582 (780)
T ss_dssp -----CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBC
T ss_pred hHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEE
Confidence 1235889999999754332221 22222221 1222 222222211110 11147
Q ss_pred Hhhcch--------hhHHHHHHHhc-----CCCcccccc------chHHHhhhCCCCcccccccc--------CCccccc
Q psy18032 247 SLTDFK--------QDTSRIALDLV-----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVL 299 (333)
Q Consensus 247 if~~~~--------~~~~~l~~~L~-----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi 299 (333)
+||++. +.++.+++.|. ++++..+|| +.+.+++|++|+++|||||| +++..|+
T Consensus 583 Vf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI 662 (780)
T 1gm5_A 583 IVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662 (780)
T ss_dssp CBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE
T ss_pred EEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE
Confidence 889855 45677777664 568899998 34567999999999999999 4455555
Q ss_pred c--------cccEEEEccCCC
Q psy18032 300 E--------GRDVVAMARTGS 312 (333)
Q Consensus 300 ~--------~~~~~~~grtG~ 312 (333)
. ..+.||+||+|.
T Consensus 663 i~d~~r~~l~~l~Qr~GRaGR 683 (780)
T 1gm5_A 663 IENPERFGLAQLHQLRGRVGR 683 (780)
T ss_dssp BCSCSSSCTTHHHHHHHTSCC
T ss_pred EeCCCCCCHHHHHHHhcccCc
Confidence 3 324579999993
No 48
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=5.4e-29 Score=246.42 Aligned_cols=124 Identities=22% Similarity=0.275 Sum_probs=107.0
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.+|+ +|+++|..++|.++.|+ +++++||+|||++|.+|++..... +..++||+||++||.|..+++..++++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-----GNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-----TSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-----CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4699 79999999999999998 999999999999999999765444 457999999999999999999999999
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc------cccccCchhhHH
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM------ELKLSSIQYTFK 187 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~------~~~~~~l~~lV~ 187 (333)
+|+++.+++||.+...+ ....+|+|+|+||++| .+++..+ .+.++.+.++|+
T Consensus 179 lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 179 LGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp TTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred cCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEE
Confidence 99999999999876543 3344699999999999 6777654 466788888885
No 49
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=4.1e-29 Score=257.29 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=124.0
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
..+.+.....-.|+..|+|+|.++++.+++|+|+++++|||||||++|++|++..+...+...++++|||+||++|+.|+
T Consensus 233 ~~e~~~~~~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~ 312 (936)
T 4a2w_A 233 AAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQ 312 (936)
T ss_dssp ---------------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHH
T ss_pred hhhhhcCcccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHH
Confidence 33333333334478889999999999999999999999999999999999999998875433467899999999999999
Q ss_pred HHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc-cccCchhhHHHHHHHhhc-------
Q psy18032 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYTFKFVKELGKF------- 195 (333)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~-~~~~l~~lV~~i~~l~~~------- 195 (333)
++.+++++...++++..++|+.+...+...+..+++|+|+||++|.+.+..+.+ .+++++++|+ |+.+.+
T Consensus 313 ~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi--DEaH~~~~~~~~~ 390 (936)
T 4a2w_A 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF--DECHNTTGNHPYN 390 (936)
T ss_dssp HHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE--ETGGGCSTTCHHH
T ss_pred HHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEE--ECccccCCCccHH
Confidence 999999988789999999999977766666666799999999999999988777 7888999884 332211
Q ss_pred ------c-------ccceeeeecCCCh
Q psy18032 196 ------T-------KLQSTCLLGGDSM 209 (333)
Q Consensus 196 ------~-------~~~~~~l~~sAT~ 209 (333)
. ....+.+++|||.
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~LSATp 417 (936)
T 4a2w_A 391 VLMTRYLEQKFNSASQLPQILGLTASV 417 (936)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEESCC
T ss_pred HHHHHHHHHhhccCCCcCeEEEecCCc
Confidence 1 2347899999998
No 50
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=3.6e-30 Score=258.52 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=105.5
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc-cCCceEEEEcccHHHHHHH-HHHHHHHhccCCc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA-TSGVRALILSPTRELALQT-FKFVKELGKFTKL 136 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~lil~Pt~~L~~q~-~~~~~~~~~~~~~ 136 (333)
.|+|+|.++++.+++|+|+++++|||+|||++|++|++..+..... ..++++||++|+++|+.|+ ++.+++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 3999999999999999999999999999999999999998876422 2346899999999999999 9999998754 58
Q ss_pred eEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHH------HhccccccCchhhHH
Q psy18032 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV------VEMELKLSSIQYTFK 187 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l------~~~~~~~~~l~~lV~ 187 (333)
++..++|+....++...+..+++|+|+||++|.+.+ ....+.+..+.++|+
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvVi 142 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIII 142 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEE
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEE
Confidence 999999998777666666678999999999999888 455677888888884
No 51
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.95 E-value=1.6e-28 Score=253.24 Aligned_cols=143 Identities=14% Similarity=0.180 Sum_probs=120.4
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.++|+ |+++|.++|+.+++|+|++++||||||||++|++++...+.. ++++||++|+++|+.|+++.++.+.
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-----g~~vlvl~PtraLa~Q~~~~l~~~~-- 106 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-----MTKTIYTSPIKALSNQKFRDFKETF-- 106 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-----TCEEEEEESCGGGHHHHHHHHHTTC--
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHHHc--
Confidence 45787 899999999999999999999999999999999999887654 6799999999999999999999853
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------------HHHHHhhccccce
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------------FVKELGKFTKLQS 200 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------------~i~~l~~~~~~~~ 200 (333)
.++.+..++|+.+... .++|+|+||++|.+++......++++.++|+ .+.++...++...
T Consensus 107 ~~~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 107 DDVNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp --CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred CCCeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 3788899999876443 5899999999999999888778888998885 2333444456789
Q ss_pred eeeecCCChHH
Q psy18032 201 TCLLGGDSMDN 211 (333)
Q Consensus 201 ~~l~~sAT~~~ 211 (333)
+++++|||+++
T Consensus 180 ~iIlLSAT~~n 190 (997)
T 4a4z_A 180 KFILLSATVPN 190 (997)
T ss_dssp EEEEEECCCTT
T ss_pred CEEEEcCCCCC
Confidence 99999999863
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=4.8e-28 Score=260.09 Aligned_cols=262 Identities=16% Similarity=0.206 Sum_probs=185.8
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhc-CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
|++...+++...+|+.|+|+|.++++.++. ++|++++||||||||++|.+|++..+... ++.++||++|+++||+|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---SEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---TTCCEEEECSCHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---CCCEEEEEcChHHHHHH
Confidence 556677788888999999999999999976 56799999999999999999999998763 35689999999999999
Q ss_pred HHHHHHH-HhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc--ccccCchhhHH------------
Q psy18032 123 TFKFVKE-LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME--LKLSSIQYTFK------------ 187 (333)
Q Consensus 123 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~--~~~~~l~~lV~------------ 187 (333)
+++.+++ ++...|+++..++|+...+.. ...+++|+|+|||++..++.+.. -.+++++++|+
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~ 1064 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGP 1064 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHH
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCc
Confidence 9999975 667789999999988765432 22358999999999987776532 23667777774
Q ss_pred ----HHHHHh---hccccceeeeecCCChH--HHHHhhhc--CCcEEE-e---CCCceEEEEEecch--hh---------
Q psy18032 188 ----FVKELG---KFTKLQSTCLLGGDSMD--NQFARLHA--SPDIVV-A---TPGRFLHIVVEMEL--KL--------- 241 (333)
Q Consensus 188 ----~i~~l~---~~~~~~~~~l~~sAT~~--~~v~~l~~--~~~i~~-~---t~~~i~~~~~~~~~--k~--------- 241 (333)
.+..+. ...+...|.+++|||++ +++.++.. ...+.. . .|-.+..++..... ..
T Consensus 1065 ~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~ 1144 (1724)
T 4f92_B 1065 VLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKP 1144 (1724)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHH
T ss_pred cHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcch
Confidence 111121 22345789999999996 45555542 223322 2 22234444432110 00
Q ss_pred ----------hhHHHHhhcchhhHHHHHHHhc------------------------------------CCCcccccc---
Q psy18032 242 ----------SSIQLSLTDFKQDTSRIALDLV------------------------------------GDSTEMIHK--- 272 (333)
Q Consensus 242 ----------~~l~lif~~~~~~~~~l~~~L~------------------------------------g~~~~~lh~--- 272 (333)
...+++||++++.|+.++..|. ...++.+|+
T Consensus 1145 ~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~ 1224 (1724)
T 4f92_B 1145 VYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLS 1224 (1724)
T ss_dssp HHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSC
T ss_pred HHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCC
Confidence 0115889999999998876552 112345676
Q ss_pred --chHHH-hhhCCCCcccccccc--------CCcccccc-----------------cccEEEEccCC
Q psy18032 273 --QRQSV-RKWDPAKKKYVQVTD--------DTIPLVLE-----------------GRDVVAMARTG 311 (333)
Q Consensus 273 --~r~~l-~~f~~g~~~vLvaTd--------~~i~~vi~-----------------~~~~~~~grtG 311 (333)
+|+.+ +.|++|.++|||||+ ++...||. ..|+|++||||
T Consensus 1225 ~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAG 1291 (1724)
T 4f92_B 1225 PMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHAN 1291 (1724)
T ss_dssp HHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcccc
Confidence 45444 889999999999998 33334442 24778889988
No 53
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=2.2e-27 Score=248.11 Aligned_cols=260 Identities=17% Similarity=0.126 Sum_probs=187.9
Q ss_pred ccCCCHHHHHHHH-hCCCCCCcHHHHhHHHHHhc----CC--cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 41 SFGLGFEVLKGVL-KRGYKIPTPIQRKTIPLVLE----GR--DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 41 ~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~----g~--d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
.++.++...+.+. .++|+ |||+|.++++.+++ |+ |+++++|||+|||++|+++++..+.. +.+++|+
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----g~~vlvl 658 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----HKQVAVL 658 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----TCEEEEE
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----CCeEEEE
Confidence 3566777777765 46898 79999999999987 66 99999999999999999999887654 6799999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHH---HHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH--
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK-- 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-- 187 (333)
+||++|+.|+++.+++.....++++..+.|..+..++. ..+.. .++|+|+||+.+. ..+.+++++++|+
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDE 733 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDE 733 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEES
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEec
Confidence 99999999999999988777788999888876655443 33444 4999999997652 4567888888884
Q ss_pred ------HHHHHhhccccceeeeecCCChHHHHHhhh-cC-CcEEE-eCCC--c--eEEEEEecchh--h---------hh
Q psy18032 188 ------FVKELGKFTKLQSTCLLGGDSMDNQFARLH-AS-PDIVV-ATPG--R--FLHIVVEMELK--L---------SS 243 (333)
Q Consensus 188 ------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~-~~-~~i~~-~t~~--~--i~~~~~~~~~k--~---------~~ 243 (333)
...+..+.++...+++++|||..+....+. .. .+..+ .+++ + +..++...... . ..
T Consensus 734 aH~~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~ 813 (1151)
T 2eyq_A 734 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGG 813 (1151)
T ss_dssp GGGSCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTC
T ss_pred hHhcChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCC
Confidence 111111223456899999999754433322 21 12222 2221 2 33333322110 0 11
Q ss_pred HHHHhhcchhhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-----
Q psy18032 244 IQLSLTDFKQDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE----- 300 (333)
Q Consensus 244 l~lif~~~~~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~----- 300 (333)
.+++||++++.++.+++.|. +.++..+|| +.+.+++|++|+++|||||+ +++..|+.
T Consensus 814 qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 814 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 893 (1151)
T ss_dssp EEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTS
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCC
Confidence 25889999999999998885 778999998 23567999999999999999 33445552
Q ss_pred ---cccEEEEccCC
Q psy18032 301 ---GRDVVAMARTG 311 (333)
Q Consensus 301 ---~~~~~~~grtG 311 (333)
..++||+||+|
T Consensus 894 ~~l~~l~Qr~GRvg 907 (1151)
T 2eyq_A 894 FGLAQLHQLRGRVG 907 (1151)
T ss_dssp SCHHHHHHHHTTCC
T ss_pred CCHHHHHHHHhccC
Confidence 44789999999
No 54
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=8.3e-28 Score=258.22 Aligned_cols=251 Identities=17% Similarity=0.208 Sum_probs=179.9
Q ss_pred CCCCCcHHHHhHHHHHhc-CCcEEEECCCCcHHHHHHHHHHHHHhhhhcc------cCCceEEEEcccHHHHHHHHHHHH
Q psy18032 56 GYKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHAA------TSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~------~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
||++|+++|.+++|.++. ++|++++||||||||++|.+|++..+..... ..+.++||++|+++|++|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999999775 7899999999999999999999999876422 246799999999999999999999
Q ss_pred HHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc--ccccCchhhHHHHHHHh-------------
Q psy18032 129 ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME--LKLSSIQYTFKFVKELG------------- 193 (333)
Q Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~--~~~~~l~~lV~~i~~l~------------- 193 (333)
+.....|++|..++|+.+...+ ...+++|+|+|||++..++.+.. -.+++++++|+ |+++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIi--DEvH~l~d~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIIL--DEIHLLHDDRGPVLEAL 230 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEE--TTGGGGGSTTHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEE--ecchhcCCccHHHHHHH
Confidence 8888889999999998765432 12468999999999876665432 23667777773 2221
Q ss_pred --------hccccceeeeecCCChH--HHHHhhhcCC---c-EEEeC---CCceEEEEEecchh-----hh---------
Q psy18032 194 --------KFTKLQSTCLLGGDSMD--NQFARLHASP---D-IVVAT---PGRFLHIVVEMELK-----LS--------- 242 (333)
Q Consensus 194 --------~~~~~~~~~l~~sAT~~--~~v~~l~~~~---~-i~~~t---~~~i~~~~~~~~~k-----~~--------- 242 (333)
...+...|.+++|||++ +++.++.... . ..+.+ |-.+.+++.....+ ..
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 12345679999999996 4566654321 1 12222 22344444321100 00
Q ss_pred -------hHHHHhhcchhhHHHHHHHhc------C---------------------------------CCcccccc----
Q psy18032 243 -------SIQLSLTDFKQDTSRIALDLV------G---------------------------------DSTEMIHK---- 272 (333)
Q Consensus 243 -------~l~lif~~~~~~~~~l~~~L~------g---------------------------------~~~~~lh~---- 272 (333)
+.++|||++|+.|+.+++.|. + ..++..||
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 115899999999999887662 0 11344566
Q ss_pred -chHHH-hhhCCCCcccccccc--------CCcccccc-----------------cccEEEEccCC
Q psy18032 273 -QRQSV-RKWDPAKKKYVQVTD--------DTIPLVLE-----------------GRDVVAMARTG 311 (333)
Q Consensus 273 -~r~~l-~~f~~g~~~vLvaTd--------~~i~~vi~-----------------~~~~~~~grtG 311 (333)
+|+.+ +.|++|.++|||||+ ++...||. ..|.|++||||
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAG 456 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAG 456 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBS
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhcc
Confidence 44444 889999999999998 45555552 34778999999
No 55
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.94 E-value=4.1e-29 Score=238.40 Aligned_cols=218 Identities=13% Similarity=0.117 Sum_probs=152.8
Q ss_pred CCCCCcHHHHhHHHHHhcCCcE-EEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDV-VAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~-l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
|+..|+|+|+ +||.+++++|+ +++||||||||++|++|++..+.. .++++||++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----RRLRTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----cCCcEEEECCCHHHHHHHHHHhc------
Confidence 7889999985 79999999987 999999999999999999987765 36799999999999999999875
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh---------------hccccc
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG---------------KFTKLQ 199 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~---------------~~~~~~ 199 (333)
+..+....+.... ....+..|.++||+.+.+.+... ..+++++++|+ |+.+ ...+..
T Consensus 70 g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iVi--DEah~~~~~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 70 GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVM--DEAHFTDPCSVAARGYISTRVEMGE 141 (451)
T ss_dssp TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEE--ETTTCCSHHHHHHHHHHHHHHHTTS
T ss_pred Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEE--eCCccCCcchHHHHHHHHHhhcCCC
Confidence 2333221111111 11234679999999998777543 55778888884 2211 112347
Q ss_pred eeeeecCCChHHHHHhhhc-CCcEE-Ee--CCCceEEEEEecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc-
Q psy18032 200 STCLLGGDSMDNQFARLHA-SPDIV-VA--TPGRFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK- 272 (333)
Q Consensus 200 ~~~l~~sAT~~~~v~~l~~-~~~i~-~~--t~~~i~~~~~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~- 272 (333)
.|++++|||++..+..+.. .+.++ +. .|..........-.+...-.+|||++++.|+.+++.|. |+.+..+|+
T Consensus 142 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~ 221 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK 221 (451)
T ss_dssp CEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ceEEEEccCCCccchhhhcCCCceEecCccCCchhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHH
Confidence 8999999999875544332 22222 21 11110000000000111236899999999999999997 889999999
Q ss_pred -chHHHhhhCCCCcccccccc
Q psy18032 273 -QRQSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 273 -~r~~l~~f~~g~~~vLvaTd 292 (333)
+.+.+++|++|+.+||||||
T Consensus 222 ~~~~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 222 TFDTEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp THHHHGGGGGSSCCSEEEECG
T ss_pred HHHHHHHhhccCCceEEEECC
Confidence 34567999999999999999
No 56
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.94 E-value=2.5e-30 Score=256.34 Aligned_cols=236 Identities=14% Similarity=0.171 Sum_probs=159.0
Q ss_pred HHHhCCCC-----CCcHHHH-----hHHHHHh------cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 51 GVLKRGYK-----IPTPIQR-----KTIPLVL------EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 51 ~l~~~g~~-----~~~~~Q~-----~~i~~i~------~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
++..+||. .||++|+ ++||.++ +|+|++++||||||||++|++|+++.+.. .++++||++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----~~~~~lila 277 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----KRLRTAVLA 277 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----TTCCEEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEc
Confidence 45566777 8999999 9999988 89999999999999999999999998765 367999999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc--------cccccCchhhH
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM--------ELKLSSIQYTF 186 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~--------~~~~~~l~~lV 186 (333)
||++||.|+++.++.+ ++. ...+. .. .++||+++++++..+ ...+++++++|
T Consensus 278 PTr~La~Q~~~~l~~~----~i~--~~~~~--l~------------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvV 337 (673)
T 2wv9_A 278 PTRVVAAEMAEALRGL----PVR--YLTPA--VQ------------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFV 337 (673)
T ss_dssp SSHHHHHHHHHHTTTS----CCE--ECCC-----------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEE
T ss_pred cHHHHHHHHHHHHhcC----Cee--eeccc--cc------------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEE
Confidence 9999999999988753 222 10000 00 145555443322222 13577888888
Q ss_pred H------------HHHHHhhccc-cceeeeecCCChHHHHHhhhcC-CcEE-EeC--C-CceEEEEEecchhhhhHHHHh
Q psy18032 187 K------------FVKELGKFTK-LQSTCLLGGDSMDNQFARLHAS-PDIV-VAT--P-GRFLHIVVEMELKLSSIQLSL 248 (333)
Q Consensus 187 ~------------~i~~l~~~~~-~~~~~l~~sAT~~~~v~~l~~~-~~i~-~~t--~-~~i~~~~~~~~~k~~~l~lif 248 (333)
+ .+..+....+ ...|++++|||++..+..+... ..+. +.. + ..+.+.+.. -.+...-.+||
T Consensus 338 iDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~~~~i~~v~~~~~~~~~~~~l~~-l~~~~~~~lVF 416 (673)
T 2wv9_A 338 MDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDTNSPVHDVSSEIPDRAWSSGFEW-ITDYAGKTVWF 416 (673)
T ss_dssp EESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSCCHH-HHSCCSCEEEE
T ss_pred EeCCcccCccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcccCCceEEEeeecCHHHHHHHHHH-HHhCCCCEEEE
Confidence 4 1111222222 5789999999998776655432 1221 110 0 111110000 00112236899
Q ss_pred hcchhhHHHHHHHhc--CCCcccccc-c-hHHHhhhCCCCcccccccc-----CC--cccccc-----------------
Q psy18032 249 TDFKQDTSRIALDLV--GDSTEMIHK-Q-RQSVRKWDPAKKKYVQVTD-----DT--IPLVLE----------------- 300 (333)
Q Consensus 249 ~~~~~~~~~l~~~L~--g~~~~~lh~-~-r~~l~~f~~g~~~vLvaTd-----~~--i~~vi~----------------- 300 (333)
|+++++++.+++.|. ++++..+|| + .+.+++|++|+++|||||| -+ +..||+
T Consensus 417 ~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv~e~GIDipv~~VI~~g~~~~p~vi~da~~r~ 496 (673)
T 2wv9_A 417 VASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGASRVIDCRKSVKPTILDEGEGRV 496 (673)
T ss_dssp CSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEECGGGGTTCCCCCSEEEECCEECCEEEECSTTCEE
T ss_pred ECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHHCCCceEEEECchhhcceeeCCcEEEECCCcccceeeecccccc
Confidence 999999999999997 889999999 3 3567999999999999999 22 555554
Q ss_pred ----------cccEEEEccCC
Q psy18032 301 ----------GRDVVAMARTG 311 (333)
Q Consensus 301 ----------~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 497 ~ll~d~P~s~~~y~Qr~GRaG 517 (673)
T 2wv9_A 497 ILSVPSAITSASAAQRRGRVG 517 (673)
T ss_dssp EECCSEECCHHHHHHHHTTSS
T ss_pred eecccCCCCHHHHHHHhhccC
Confidence 45999999999
No 57
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.94 E-value=1.8e-29 Score=248.58 Aligned_cols=237 Identities=12% Similarity=0.070 Sum_probs=158.2
Q ss_pred cccc-cCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 38 GFQS-FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 38 ~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
.|.. +++++.+.+++.+. ...|+|+|+.+++.+++|+|++++||||||||++|++|+++.+.. .++++||++||
T Consensus 150 ~~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----~~~~vLvl~Pt 224 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----RRLRTLILAPT 224 (618)
T ss_dssp CCC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESS
T ss_pred cccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----CCCeEEEEcCh
Confidence 4455 67888777766654 588999999999999999999999999999999999999999876 36799999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------
Q psy18032 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK--------- 187 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~--------- 187 (333)
++||.|+++.++. ..+. ..+.. .. .....+..+.++|.+.+...+... ..+++++++|+
T Consensus 225 reLa~Qi~~~l~~------~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~~~ 292 (618)
T 2whx_A 225 RVVAAEMEEALRG------LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTDPC 292 (618)
T ss_dssp HHHHHHHHHHTTT------SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCCSHH
T ss_pred HHHHHHHHHHhcC------Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCCCcc
Confidence 9999999988763 2232 11111 00 001113456677777776554433 45778888885
Q ss_pred H---HHHHhhccc-cceeeeecCCChHHHHHhhhc-CCcEEEe-C--CC-ceEEEEEecchhhhhHHHHhhcchhhHHHH
Q psy18032 188 F---VKELGKFTK-LQSTCLLGGDSMDNQFARLHA-SPDIVVA-T--PG-RFLHIVVEMELKLSSIQLSLTDFKQDTSRI 258 (333)
Q Consensus 188 ~---i~~l~~~~~-~~~~~l~~sAT~~~~v~~l~~-~~~i~~~-t--~~-~i~~~~~~~~~k~~~l~lif~~~~~~~~~l 258 (333)
+ +..+...++ ...|++++|||++..+..+.. .+.++.. . |. .....+ ..-.+...-.+|||++++.|+.+
T Consensus 293 ~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll-~~l~~~~~~~LVF~~s~~~a~~l 371 (618)
T 2whx_A 293 SVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGF-DWITDYQGKTVWFVPSIKAGNDI 371 (618)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSC-HHHHHCCSCEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHhcccCccEEEEECCCchhhhhhhccCCceeeecccCCHHHHHHHH-HHHHhCCCCEEEEECChhHHHHH
Confidence 2 222333333 578999999999877655543 2322221 1 11 110000 00001112368999999999999
Q ss_pred HHHhc--CCCcccccc-ch-HHHhhhCCCCcccccccc
Q psy18032 259 ALDLV--GDSTEMIHK-QR-QSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 259 ~~~L~--g~~~~~lh~-~r-~~l~~f~~g~~~vLvaTd 292 (333)
++.|. ++++..+|| +| +.+++|++|+.+||||||
T Consensus 372 ~~~L~~~g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 372 ANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp HHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEEECG
T ss_pred HHHHHHcCCcEEEEChHHHHHHHHhhcCCCcEEEEECc
Confidence 99997 889999999 33 566999999999999999
No 58
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.93 E-value=5.6e-28 Score=236.90 Aligned_cols=233 Identities=14% Similarity=0.115 Sum_probs=160.4
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEE
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 139 (333)
+.+.|.++++.+.+++|++++||||||||++|.+|+++. +.++||++|||+||.|+++.+.+. .+..+.
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------g~~vLVl~PTReLA~Qia~~l~~~---~g~~vg 286 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------GYKVLVLNPSVAATLGFGAYMSKA---HGIDPN 286 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------TCCEEEEESCHHHHHHHHHHHHHH---HSCCCE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------CCeEEEEcchHHHHHHHHHHHHHH---hCCCee
Confidence 445566666666688999999999999999999998862 568999999999999999877653 355667
Q ss_pred EEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------H---HHHHhhcccccee--eeec
Q psy18032 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------F---VKELGKFTKLQST--CLLG 205 (333)
Q Consensus 140 ~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------~---i~~l~~~~~~~~~--~l~~ 205 (333)
..+|+.. +..+++|+|+||++| +....+.+++++++|+ + +..+.+.++...+ .+++
T Consensus 287 ~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 287 IRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp EECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEE
Confidence 7777755 345799999999997 4566778888888885 3 2233344444444 6667
Q ss_pred CCChHHHHHhhhcCCcEEE--eCCCceEEEEEec---chhhhhHHHHhhcchhhHHHHHHHhc--CCCccccccchHHHh
Q psy18032 206 GDSMDNQFARLHASPDIVV--ATPGRFLHIVVEM---ELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHKQRQSVR 278 (333)
Q Consensus 206 sAT~~~~v~~l~~~~~i~~--~t~~~i~~~~~~~---~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~~r~~l~ 278 (333)
|||++..+.. ..+.+.. ........++... ......-.+|||+++++++++++.|. |+++..+||+... +
T Consensus 357 SAT~~~~i~~--~~p~i~~v~~~~~~~i~~~~~~~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q-~ 433 (666)
T 3o8b_A 357 TATPPGSVTV--PHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDV-S 433 (666)
T ss_dssp ESSCTTCCCC--CCTTEEEEECBSCSSEEETTEEECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCG-G
T ss_pred CCCCCccccc--CCcceEEEeecccchhHHHHhhhhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCH-H
Confidence 9999874331 2222211 1111112221111 01111236899999999999999996 8899999994322 2
Q ss_pred hhCCCCcccccccc-------CCcccccc----------------------------cccEEEEccCCCchhh
Q psy18032 279 KWDPAKKKYVQVTD-------DTIPLVLE----------------------------GRDVVAMARTGSGKTA 316 (333)
Q Consensus 279 ~f~~g~~~vLvaTd-------~~i~~vi~----------------------------~~~~~~~grtG~g~~~ 316 (333)
+|.+++.+|||||| .+++.||+ ..|+||+||||.|+..
T Consensus 434 er~~~~~~VLVATdVaerGIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGRg~~G 506 (666)
T 3o8b_A 434 VIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRG 506 (666)
T ss_dssp GSCSSSCEEEEECTTHHHHCCCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCE
T ss_pred HHHhCCCcEEEECChHHccCCCCCcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCCCCCC
Confidence 35666679999999 34666662 2499999999954443
No 59
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.92 E-value=1.8e-28 Score=233.12 Aligned_cols=216 Identities=16% Similarity=0.149 Sum_probs=141.7
Q ss_pred HHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHH
Q psy18032 70 LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149 (333)
Q Consensus 70 ~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (333)
.+++|+|++++||||||||++|++|+++.+.. .+++++|++||++||.|+++.++.+ + +....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~~---- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR----RRLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQAF---- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----cCCeEEEEcchHHHHHHHHHHHhcC----C--eEEecccc----
Confidence 36789999999999999999999999998765 3679999999999999999988743 2 22111110
Q ss_pred HHHHhhCCCCEEEECchHHHHHHHhcc--------ccccCchhhHHHHHHHhhc--------------c-ccceeeeecC
Q psy18032 150 QFARLHASPDIVVATPGRFLHIVVEME--------LKLSSIQYTFKFVKELGKF--------------T-KLQSTCLLGG 206 (333)
Q Consensus 150 ~~~~l~~~~~IlI~TP~rll~~l~~~~--------~~~~~l~~lV~~i~~l~~~--------------~-~~~~~~l~~s 206 (333)
-.++||+++++++..+. ..+++++++|+ |+.+.+ . +...|++++|
T Consensus 70 ----------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vVi--DEah~~~~~~~~~~~~~~~~~~~~~~~~l~~S 137 (440)
T 1yks_A 70 ----------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIM--DEAHFLDPASIAARGWAAHRARANESATILMT 137 (440)
T ss_dssp ----------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEE--TTTTCCSHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred ----------eeccCCccceeeecccchhHhhhCcccccCccEEEE--ECccccCcchHHHHHHHHHHhccCCceEEEEe
Confidence 03788887765444333 23788888884 332221 2 2568999999
Q ss_pred CChHHHHHhhhcCC-cEEEeC---C-CceEEEEEecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc--chHHH
Q psy18032 207 DSMDNQFARLHASP-DIVVAT---P-GRFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK--QRQSV 277 (333)
Q Consensus 207 AT~~~~v~~l~~~~-~i~~~t---~-~~i~~~~~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~--~r~~l 277 (333)
||+++.+..+.... .+.... + ....+.+. .-.+...-.+|||++++.++.+++.|. |+++..+|| +++.+
T Consensus 138 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~ 216 (440)
T 1yks_A 138 ATPPGTSDEFPHSNGEIEDVQTDIPSEPWNTGHD-WILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREY 216 (440)
T ss_dssp SSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCH-HHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC---
T ss_pred CCCCchhhhhhhcCCCeeEeeeccChHHHHHHHH-HHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHH
Confidence 99987765554321 111110 0 00000000 000111236899999999999999997 889999999 44677
Q ss_pred hhhCCCCcccccccc-----CC--cccccc--------------------------cccEEEEccCCC
Q psy18032 278 RKWDPAKKKYVQVTD-----DT--IPLVLE--------------------------GRDVVAMARTGS 312 (333)
Q Consensus 278 ~~f~~g~~~vLvaTd-----~~--i~~vi~--------------------------~~~~~~~grtG~ 312 (333)
++|++|+++|||||| -+ +..||+ ..|+||+||+|.
T Consensus 217 ~~F~~g~~~vLVaT~v~e~GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR 284 (440)
T 1yks_A 217 PTIKQKKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284 (440)
T ss_dssp -----CCCSEEEESSSTTCCTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred hhhcCCCceEEEECChhheeeccCceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCC
Confidence 999999999999999 23 445542 358999999994
No 60
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.92 E-value=2.3e-25 Score=224.44 Aligned_cols=274 Identities=17% Similarity=0.140 Sum_probs=183.6
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhc-CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
.+..+|+++++++.+.+.+.+.+ ..|+++|+++|+.++. +++++++||||||||. ++|++..........+.++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEe
Confidence 34568999999999999999988 7899999999999776 5679999999999998 566663222111122568999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCc-chHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGD-SMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
++|+++|+.|+++.+... .+..+...+|.. .... ....+++|+++||+++...+... ..+.+++++|+
T Consensus 146 l~P~r~La~q~~~~l~~~---~~~~v~~~vG~~i~~~~---~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah 218 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEE---MDVKLGEEVGYSIRFEN---KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAH 218 (773)
T ss_dssp EESCHHHHHHHHHHHHHH---TTCCBTTTEEEEETTEE---ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGG
T ss_pred cCchHHHHHHHHHHHHHH---hCCchhheecceecccc---ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcc
Confidence 999999999999877653 233222222211 1100 11236899999999999877653 34666777764
Q ss_pred -----------HHHHHhhccccceeeeecCCChH-HHHHhhhcCCcEEEe--CCCceEEEEEecch--hh----------
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMD-NQFARLHASPDIVVA--TPGRFLHIVVEMEL--KL---------- 241 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~-~~v~~l~~~~~i~~~--t~~~i~~~~~~~~~--k~---------- 241 (333)
++.++.... ...+++++|||++ +.+..+.....++.. ..-.+..++..... ..
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~ 297 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQI 297 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHH
Confidence 222222211 3578999999986 444555444433332 11234444432211 11
Q ss_pred -----hhHHHHhhcchhhHHHHHHHhc-------------CCCcccccc------chHHHhhhC-----CCCcccccccc
Q psy18032 242 -----SSIQLSLTDFKQDTSRIALDLV-------------GDSTEMIHK------QRQSVRKWD-----PAKKKYVQVTD 292 (333)
Q Consensus 242 -----~~l~lif~~~~~~~~~l~~~L~-------------g~~~~~lh~------~r~~l~~f~-----~g~~~vLvaTd 292 (333)
..-.+|||+++++++.+++.|. ++.+..+|| +++.++.|. +|+.+||||||
T Consensus 298 ~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ 377 (773)
T 2xau_A 298 HATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN 377 (773)
T ss_dssp HHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT
T ss_pred HHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc
Confidence 1114899999999999997763 567889998 334569999 99999999999
Q ss_pred --------CCcccccc-------------------------cccEEEEccCC---CchhhHH
Q psy18032 293 --------DTIPLVLE-------------------------GRDVVAMARTG---SGKTACF 318 (333)
Q Consensus 293 --------~~i~~vi~-------------------------~~~~~~~grtG---~g~~~~~ 318 (333)
+++..||+ ..|+||+||+| .|+...+
T Consensus 378 iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l 439 (773)
T 2xau_A 378 IAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRL 439 (773)
T ss_dssp HHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEES
T ss_pred HHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEE
Confidence 55556665 23689999999 4654433
No 61
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.92 E-value=1.9e-26 Score=223.36 Aligned_cols=242 Identities=14% Similarity=0.023 Sum_probs=170.1
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.|+|+|.++++.+++++|+++++|||+|||++|+.++...+.. .++++|||+|+++|+.|+++.+++++...++.+
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v 188 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH----CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGE
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC----CCCeEEEEECcHHHHHHHHHHHHHhhcCCccce
Confidence 6999999999999999999999999999999999999888764 234999999999999999999999877777888
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------HHHHHhhccccceeeeecCCCh
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------FVKELGKFTKLQSTCLLGGDSM 209 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------~i~~l~~~~~~~~~~l~~sAT~ 209 (333)
..+.|+.+..++ +..+++|+|+||+.+... ....++++.++|+ ....+.+.++...+.+++|||.
T Consensus 189 ~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 189 KKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp EECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESCG
T ss_pred EEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeCC
Confidence 989888776654 455799999999976532 3355677777774 2222333344567889999999
Q ss_pred HHHHHhh-----hcCCcEEEeCC-----------CceEEEEEecc-----------------------hhhhhH------
Q psy18032 210 DNQFARL-----HASPDIVVATP-----------GRFLHIVVEME-----------------------LKLSSI------ 244 (333)
Q Consensus 210 ~~~v~~l-----~~~~~i~~~t~-----------~~i~~~~~~~~-----------------------~k~~~l------ 244 (333)
++....+ ..++.+...++ ..+........ .+...+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 342 (510)
T 2oca_A 263 RDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIK 342 (510)
T ss_dssp GGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHH
Confidence 6542110 11221111111 11111111100 000001
Q ss_pred --------HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCccccccc-c--------CCccccc
Q psy18032 245 --------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVT-D--------DTIPLVL 299 (333)
Q Consensus 245 --------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaT-d--------~~i~~vi 299 (333)
.++|++ .+.++.+++.|. +.++..+|| +| +.+++|++|+.+||||| + +++..|+
T Consensus 343 ~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi 421 (510)
T 2oca_A 343 LAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVV 421 (510)
T ss_dssp HHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEE
T ss_pred HHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEE
Confidence 245555 888999999997 458999998 23 45699999999999999 6 3344444
Q ss_pred c-------cccEEEEccCC
Q psy18032 300 E-------GRDVVAMARTG 311 (333)
Q Consensus 300 ~-------~~~~~~~grtG 311 (333)
. ..++|++||+|
T Consensus 422 ~~~~~~s~~~~~Q~~GR~g 440 (510)
T 2oca_A 422 LAHGVKSKIIVLQTIGRVL 440 (510)
T ss_dssp ESSCCCSCCHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHhccc
Confidence 2 45889888777
No 62
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=8.2e-25 Score=208.85 Aligned_cols=144 Identities=20% Similarity=0.207 Sum_probs=118.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.|+.+.++++....+.++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhhe
Confidence 4999999999999999 99999999999999999999988762 356899999999999999999999765455688
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhcc---------------ccceeee
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFT---------------KLQSTCL 203 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~---------------~~~~~~l 203 (333)
..+.|+....+.. ....+++|+|+||+.+...+..+.+.+.++.++|+ |+.+.+. ....+.+
T Consensus 84 ~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIi--DEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 84 VALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVF--DEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp EEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEE--ETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred EEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEE--ECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 8889888776543 33446899999999999999888888888888883 4333222 2356789
Q ss_pred ecCCChH
Q psy18032 204 LGGDSMD 210 (333)
Q Consensus 204 ~~sAT~~ 210 (333)
++|||..
T Consensus 161 ~lTaTp~ 167 (494)
T 1wp9_A 161 GLTASPG 167 (494)
T ss_dssp EEESCSC
T ss_pred EEecCCC
Confidence 9999985
No 63
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.91 E-value=1.2e-26 Score=221.76 Aligned_cols=225 Identities=14% Similarity=0.127 Sum_probs=149.9
Q ss_pred HHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchH
Q psy18032 69 PLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD 148 (333)
Q Consensus 69 ~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (333)
..+.+++|++++||||||||++|++|+++.+.. .++++||++||++|+.|+++.++ +..+....+.....
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~ 85 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE 85 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC
Confidence 346678999999999999999999999998765 36799999999999999999887 23222211111110
Q ss_pred HHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhh--------------c-cccceeeeecCCChHHHH
Q psy18032 149 NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGK--------------F-TKLQSTCLLGGDSMDNQF 213 (333)
Q Consensus 149 ~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~--------------~-~~~~~~~l~~sAT~~~~v 213 (333)
-..+..+.++|.+.+...+... ..+++++++|+ |+... . .....|++++|||++..+
T Consensus 86 -----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iVi--DEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~ 157 (459)
T 2z83_A 86 -----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVM--DEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTT 157 (459)
T ss_dssp -------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEE--SSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred -----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEE--ECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcch
Confidence 1123456778888777655443 45777888884 22221 1 124689999999999776
Q ss_pred Hhhhc--CCcEEEe--CCCceEEEEEecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc--chHHHhhhCCCCc
Q psy18032 214 ARLHA--SPDIVVA--TPGRFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK--QRQSVRKWDPAKK 285 (333)
Q Consensus 214 ~~l~~--~~~i~~~--t~~~i~~~~~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~--~r~~l~~f~~g~~ 285 (333)
..+.. .|...+. .+..........-.+...-.+|||++++.++.+++.|. |+++..+|+ +++.+++|++|+.
T Consensus 158 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~ 237 (459)
T 2z83_A 158 DPFPDSNAPIHDLQDEIPDRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDW 237 (459)
T ss_dssp CSSCCCSSCEEEEECCCCSSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCC
T ss_pred hhhccCCCCeEEecccCCcchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCc
Confidence 55532 2222221 11110000000000112236899999999999999997 899999999 3456799999999
Q ss_pred ccccccc-----CCc--ccccc---------------------------cccEEEEccCC
Q psy18032 286 KYVQVTD-----DTI--PLVLE---------------------------GRDVVAMARTG 311 (333)
Q Consensus 286 ~vLvaTd-----~~i--~~vi~---------------------------~~~~~~~grtG 311 (333)
+|||||| -++ ..||+ ..|+||+||+|
T Consensus 238 ~iLVaT~v~~~GiDip~~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaG 297 (459)
T 2z83_A 238 DFVITTDISEMGANFGASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVG 297 (459)
T ss_dssp SEEEESSCC---CCCSCSEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSS
T ss_pred eEEEECChHHhCeecCCCEEEECCcccccccccccccccccccCCCCCHHHHHHhccccC
Confidence 9999999 233 45554 44999999999
No 64
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.91 E-value=1.4e-25 Score=212.75 Aligned_cols=222 Identities=14% Similarity=0.125 Sum_probs=148.9
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (333)
+|+|++++||||||||++|++|+++.+.. .+++++|++||++|+.|+++.++ ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~----- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS----- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----
Confidence 47899999999999999999999977654 36799999999999999988775 4455544443221
Q ss_pred HhhCCCCEEEECchHHHHHHHhccccccCchhhHH------------HHHHHhhcc-ccceeeeecCCChHHHHHhhhc-
Q psy18032 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------------FVKELGKFT-KLQSTCLLGGDSMDNQFARLHA- 218 (333)
Q Consensus 153 ~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------------~i~~l~~~~-~~~~~~l~~sAT~~~~v~~l~~- 218 (333)
.-..+..+.+.|.+.+...+.. ...+++++++|+ ....+.... +...+++++|||+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~ 144 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS 144 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC
T ss_pred cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC
Confidence 1112345667888888766655 556788888885 111222221 3478999999999876655542
Q ss_pred -CCcEEEeC--C-CceEEEEEecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc--chHHHhhhCCCCcccccc
Q psy18032 219 -SPDIVVAT--P-GRFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK--QRQSVRKWDPAKKKYVQV 290 (333)
Q Consensus 219 -~~~i~~~t--~-~~i~~~~~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~--~r~~l~~f~~g~~~vLva 290 (333)
.+.+.+.. + ......+... .+...-.+|||+++++++.+++.|. ++++..+|| +.+.+++|++|+++||||
T Consensus 145 ~~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVa 223 (431)
T 2v6i_A 145 NSPIIDEETRIPDKAWNSGYEWI-TEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVIT 223 (431)
T ss_dssp SSCCEEEECCCCSSCCSSCCHHH-HSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEE
T ss_pred CCceeeccccCCHHHHHHHHHHH-HcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEE
Confidence 22222211 1 1110000000 0011236899999999999999997 889999999 335669999999999999
Q ss_pred cc-----CCcc--cc-----------------cc-------cccEEEEccCC
Q psy18032 291 TD-----DTIP--LV-----------------LE-------GRDVVAMARTG 311 (333)
Q Consensus 291 Td-----~~i~--~v-----------------i~-------~~~~~~~grtG 311 (333)
|| -++| .| ++ ..|+||+||+|
T Consensus 224 T~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 224 TDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp CGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred CchHHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 99 3444 22 22 45999999999
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.88 E-value=8.8e-24 Score=202.63 Aligned_cols=224 Identities=16% Similarity=0.096 Sum_probs=153.4
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCce-
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ- 137 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~- 137 (333)
.|+|+|.++++.++++.++++++|||+|||++|+.++... +.++||++|+++|+.|+++.++.+ ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------CSCEEEEESSHHHHHHHHHHGGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHhC----CCcc
Confidence 5899999999999999999999999999999999998764 458999999999999999999883 677
Q ss_pred EEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccc----------cceeeeecCC
Q psy18032 138 STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTK----------LQSTCLLGGD 207 (333)
Q Consensus 138 ~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~----------~~~~~l~~sA 207 (333)
+..+.|+... .++|+|+||+.+......- .+++.++| +|+...+.. ...+.+++||
T Consensus 161 v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liI--vDEaH~~~~~~~~~~~~~~~~~~~l~lSA 226 (472)
T 2fwr_A 161 VGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLI--FDEVHHLPAESYVQIAQMSIAPFRLGLTA 226 (472)
T ss_dssp EEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEE--EETGGGTTSTTTHHHHHTCCCSEEEEEES
T ss_pred eEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEE--EECCcCCCChHHHHHHHhcCCCeEEEEec
Confidence 7777776642 4789999999987665421 13466666 333332221 2467788999
Q ss_pred ChHH-------------------HHHhhhc----CCc---EEEeCC----------------------------CceEEE
Q psy18032 208 SMDN-------------------QFARLHA----SPD---IVVATP----------------------------GRFLHI 233 (333)
Q Consensus 208 T~~~-------------------~v~~l~~----~~~---i~~~t~----------------------------~~i~~~ 233 (333)
|..+ ....+.. ++. +.+..+ ..+.++
T Consensus 227 Tp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 306 (472)
T 2fwr_A 227 TFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKI 306 (472)
T ss_dssp CCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTT
T ss_pred CccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHH
Confidence 9852 1111111 111 111000 000000
Q ss_pred E-----------------------Eecchhhhh-----------HHHHhhcchhhHHHHHHHhcCCCcccccc-----ch
Q psy18032 234 V-----------------------VEMELKLSS-----------IQLSLTDFKQDTSRIALDLVGDSTEMIHK-----QR 274 (333)
Q Consensus 234 ~-----------------------~~~~~k~~~-----------l~lif~~~~~~~~~l~~~L~g~~~~~lh~-----~r 274 (333)
+ .....|... -.+|||++++.++.+++.|. +..+|| +|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~---~~~~~g~~~~~~R 383 (472)
T 2fwr_A 307 VMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL---IPAITHRTSREER 383 (472)
T ss_dssp TTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT---CCBCCSSSCSHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC---cceeeCCCCHHHH
Confidence 0 000011111 14889999999999998884 556777 23
Q ss_pred -HHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 275 -QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 275 -~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
+.+++|++|+++|||||+ +++..|+. ..|+|++||+|
T Consensus 384 ~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~ 436 (472)
T 2fwr_A 384 EEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRIL 436 (472)
T ss_dssp HTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSB
T ss_pred HHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhcc
Confidence 456999999999999998 44555553 45889888888
No 66
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.84 E-value=2.6e-21 Score=191.46 Aligned_cols=214 Identities=14% Similarity=0.073 Sum_probs=133.8
Q ss_pred HHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEE
Q psy18032 63 IQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142 (333)
Q Consensus 63 ~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 142 (333)
.|.......++|+|++++||||||||+ +++..+.. ...++|++||++||.|+++.++.+ |+.+..++
T Consensus 144 ~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~-----~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~llt 210 (677)
T 3rc3_A 144 PNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFS-----AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVT 210 (677)
T ss_dssp GGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHH-----SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEEC
T ss_pred hhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHh-----cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEE
Confidence 344444556789999999999999998 44455444 234699999999999999999873 78888999
Q ss_pred CCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------HHHHHhhccccceeeeecCCChHHHHHhh
Q psy18032 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------FVKELGKFTKLQSTCLLGGDSMDNQFARL 216 (333)
Q Consensus 143 g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l 216 (333)
|+...-. ..-....+++++|++.+.....-+.+-+++...+.. ....+..+.....+++++|||.+ .+..+
T Consensus 211 G~~~~iv--~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l 287 (677)
T 3rc3_A 211 GEERVTV--QPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LVMEL 287 (677)
T ss_dssp SSCEECC--STTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHH
T ss_pred CCeeEEe--cCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-HHHHH
Confidence 8876511 000113678999986543110001222333332211 12223333336788999999964 33333
Q ss_pred h--cCCcEEEeCCCceEEEEEec-----chhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhC
Q psy18032 217 H--ASPDIVVATPGRFLHIVVEM-----ELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWD 281 (333)
Q Consensus 217 ~--~~~~i~~~t~~~i~~~~~~~-----~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~ 281 (333)
. .+..+.+....+........ -.+...-.++||+++++++.+++.|. ++.+..+|| +++.++.|+
T Consensus 288 ~~~~~~~~~v~~~~r~~~l~~~~~~l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~ 367 (677)
T 3rc3_A 288 MYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFN 367 (677)
T ss_dssp HHHHTCCEEEEECCCSSCEEECSSCCCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred HHhcCCceEEEEeeecchHHHHHHHHHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHH
Confidence 2 12233332222211111110 01111223789999999999999997 889999998 235669999
Q ss_pred C--CCcccccccc
Q psy18032 282 P--AKKKYVQVTD 292 (333)
Q Consensus 282 ~--g~~~vLvaTd 292 (333)
+ |+++||||||
T Consensus 368 ~~~g~~~VLVATd 380 (677)
T 3rc3_A 368 DPNDPCKILVATD 380 (677)
T ss_dssp CTTSSCCEEEECG
T ss_pred ccCCCeEEEEeCc
Confidence 8 9999999998
No 67
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.82 E-value=2.2e-21 Score=191.07 Aligned_cols=250 Identities=12% Similarity=0.071 Sum_probs=140.7
Q ss_pred CCcHHHHhHHHHHhc----C-CcEEEECCCCcHHHHHHHHHHHHHhhhh----cccCCceEEEEcccHHHHHHHH-HHHH
Q psy18032 59 IPTPIQRKTIPLVLE----G-RDVVAMARTGSGKTACFLIPMLEKLKTH----AATSGVRALILSPTRELALQTF-KFVK 128 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~----g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~~~lil~Pt~~L~~q~~-~~~~ 128 (333)
.|+++|.++++.+++ | +++++++|||||||++++..+...+... ....++++|||+|+++|+.|++ +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 599999999999886 4 5699999999999999655444333321 0114679999999999999998 7777
Q ss_pred HHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHH----hccccccCchhhHHHHHHH-----------h
Q psy18032 129 ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV----EMELKLSSIQYTFKFVKEL-----------G 193 (333)
Q Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~----~~~~~~~~l~~lV~~i~~l-----------~ 193 (333)
.++ ..+..+.++. ...+.+|+|+||++|..... ...+....+.++|+ |+. .
T Consensus 258 ~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIi--DEaH~~~~~~~~~~~ 323 (590)
T 3h1t_A 258 PFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIII--DECHRGSARDNSNWR 323 (590)
T ss_dssp TTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEE--SCCC---------CH
T ss_pred hcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEE--ECCccccccchHHHH
Confidence 643 3333333221 23468999999999988764 23345566777774 221 1
Q ss_pred hccc--cceeeeecCCChH----HHHHhhhcCC------------------cEEEe-CCCc-----------------eE
Q psy18032 194 KFTK--LQSTCLLGGDSMD----NQFARLHASP------------------DIVVA-TPGR-----------------FL 231 (333)
Q Consensus 194 ~~~~--~~~~~l~~sAT~~----~~v~~l~~~~------------------~i~~~-t~~~-----------------i~ 231 (333)
.++. ...+.+++|||.. .....+...+ .+... +... +.
T Consensus 324 ~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 324 EILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 1111 1367899999954 1222221111 11110 0000 00
Q ss_pred EEEEec-c--------hh-------h---------hhHHHHhhcchhhHHHHHHHhc--CC--------Ccccccc---c
Q psy18032 232 HIVVEM-E--------LK-------L---------SSIQLSLTDFKQDTSRIALDLV--GD--------STEMIHK---Q 273 (333)
Q Consensus 232 ~~~~~~-~--------~k-------~---------~~l~lif~~~~~~~~~l~~~L~--g~--------~~~~lh~---~ 273 (333)
...... . .+ + ..-++|||++++.|+.+++.|. +. .+..+|| +
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 000000 0 00 0 0115899999999999998885 21 2567887 2
Q ss_pred -h-HHHhhhCCCCcc---cccccc--------CCcccccc-------cccEEEEccCCC-----chhhHHHhhh
Q psy18032 274 -R-QSVRKWDPAKKK---YVQVTD--------DTIPLVLE-------GRDVVAMARTGS-----GKTACFLFYF 322 (333)
Q Consensus 274 -r-~~l~~f~~g~~~---vLvaTd--------~~i~~vi~-------~~~~~~~grtG~-----g~~~~~~lp~ 322 (333)
| +.+++|++|+.+ |||+|| +++..|+. ..|+|++||+|. ||...+++-+
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 3 456999998876 788887 33444543 448899999993 6776665543
No 68
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.81 E-value=4.8e-20 Score=157.81 Aligned_cols=132 Identities=21% Similarity=0.223 Sum_probs=104.8
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcccHHHHHH-HHHHHHHHhc
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTRELALQ-TFKFVKELGK 132 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~ 132 (333)
.+...|+++|.++++.+++++++++++|||+|||++|+++++..+.... ...+.++||++|+++|+.| ..+.++.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 3445699999999999999999999999999999999999998876532 1235689999999999999 6778888765
Q ss_pred cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc------ccccCchhhHH
Q psy18032 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME------LKLSSIQYTFK 187 (333)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~------~~~~~l~~lV~ 187 (333)
. ++++..+.|+.........+..+++|+|+||+++...+.... +.+.++.++|+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIi 168 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIII 168 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEE
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEE
Confidence 4 788888888876655555555579999999999998887643 56777888883
No 69
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.78 E-value=7.4e-19 Score=173.99 Aligned_cols=124 Identities=17% Similarity=0.173 Sum_probs=107.8
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
-+|| +|+++|..++|.++.|+ +++++||+|||++|.+|++..... |.+++|++||++||.|.++.+..++++
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-----G~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-----GKGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-----CSCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-----CCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 3799 79999999999999998 999999999999999999655443 558999999999999999999999999
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhcc------cccc---CchhhHH
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEME------LKLS---SIQYTFK 187 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~~------~~~~---~l~~lV~ 187 (333)
+|+++.+++||.+... +....+++|+|+||+++ .+++..+. +.++ .++++|+
T Consensus 147 lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lII 208 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAII 208 (997)
T ss_dssp TTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEE
T ss_pred cCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEE
Confidence 9999999999988544 33344799999999999 78887763 5677 8999883
No 70
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=149.24 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=112.8
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 45 GFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 45 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
++.+.+.+...+.-.++++|.++++.+.+|++++++||||||||.++.++++..........+.++++++|+++|+.|+.
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHH
Confidence 44444444443334479999999999999999999999999999999999998776543333568999999999999998
Q ss_pred HHHHHHh-ccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----------HH-HH
Q psy18032 125 KFVKELG-KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-----------FV-KE 191 (333)
Q Consensus 125 ~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-----------~i-~~ 191 (333)
+.+.... ...+..+......... ....+++|+|+||+++++++.. .+++++++|+ +. ..
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHH
Confidence 8887632 2334444332222111 1123588999999999999876 3677777774 11 12
Q ss_pred Hhhccc--cceeeeecCCChHHHH
Q psy18032 192 LGKFTK--LQSTCLLGGDSMDNQF 213 (333)
Q Consensus 192 l~~~~~--~~~~~l~~sAT~~~~v 213 (333)
+..+.. ...|++++|||++...
T Consensus 199 l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 199 LRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHCTTSEEEEEECSSCCHH
T ss_pred HHHHHhhCCCCeEEEEecCCCHHH
Confidence 222222 3578999999997543
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.74 E-value=5.8e-18 Score=164.84 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=74.5
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
-+|+. |+++|.-..-.+..|+ ++.+.||+|||+++.+|++-.... |..+.|++|+..||.+-.+++..+..+
T Consensus 71 ~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----G~~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 71 TLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-----GKGVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp HTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-----SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-----CCceEEEeccHHHHHhHHHHHHHHHHH
Confidence 35777 8999999999999887 999999999999999999866555 667999999999999999999999999
Q ss_pred CCceEEEEEC
Q psy18032 134 TKLQSTCLLG 143 (333)
Q Consensus 134 ~~~~~~~~~g 143 (333)
+|+++.+++.
T Consensus 143 Lglsvg~i~~ 152 (822)
T 3jux_A 143 LGLRVGVINS 152 (822)
T ss_dssp TTCCEEEEET
T ss_pred hCCEEEEEcC
Confidence 9999999997
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.74 E-value=5.5e-19 Score=181.84 Aligned_cols=155 Identities=15% Similarity=0.049 Sum_probs=109.4
Q ss_pred HHHHHHHHhCC-------CCCCcHHHHhHHHHHhc--------------CCcEEEECCCCcHHHHHHHHHHHHHhhhhcc
Q psy18032 46 FEVLKGVLKRG-------YKIPTPIQRKTIPLVLE--------------GRDVVAMARTGSGKTACFLIPMLEKLKTHAA 104 (333)
Q Consensus 46 ~~l~~~l~~~g-------~~~~~~~Q~~~i~~i~~--------------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~ 104 (333)
+.+++.+..+- ...|+|+|.+|++.++. +++.+++++||||||+++ ++++..+.. .
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--~ 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--L 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--C
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--c
Confidence 45566665542 23499999999999876 368999999999999997 666655443 1
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh-CCCCEEEECchHHHHHHHhcc--ccccC
Q psy18032 105 TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEME--LKLSS 181 (333)
Q Consensus 105 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~IlI~TP~rll~~l~~~~--~~~~~ 181 (333)
....++|||+|+++|+.|..+.++.++.. .+.++.+.......+. .+++|+|+||+++..++.... ..++.
T Consensus 328 ~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~ 401 (1038)
T 2w00_A 328 DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQ 401 (1038)
T ss_dssp TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGS
T ss_pred CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhcccc
Confidence 22469999999999999999999987542 1234555555555564 468999999999998876542 23445
Q ss_pred chhhHH----------HHHHHhhccccceeeeecCCChH
Q psy18032 182 IQYTFK----------FVKELGKFTKLQSTCLLGGDSMD 210 (333)
Q Consensus 182 l~~lV~----------~i~~l~~~~~~~~~~l~~sAT~~ 210 (333)
..++|+ +...+...++ ..+.++||||..
T Consensus 402 ~~lvIiDEAHrs~~~~~~~~I~~~~p-~a~~lgfTATP~ 439 (1038)
T 2w00_A 402 QVVFIFDECHRSQFGEAQKNLKKKFK-RYYQFGFTGTPI 439 (1038)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHHHCS-SEEEEEEESSCC
T ss_pred ccEEEEEccchhcchHHHHHHHHhCC-cccEEEEeCCcc
Confidence 555553 2334444443 468899999975
No 73
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.72 E-value=1.4e-17 Score=148.81 Aligned_cols=143 Identities=16% Similarity=0.080 Sum_probs=110.0
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.|+++|.++++.++++.+.++++|||+|||++++.++...+.. .+.++||++|+++|+.|+.+.+++++...+..+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc----CCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 6999999999999998899999999999999999888877654 234899999999999999999999877667788
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------HHHHHhhccccceeeeecCCCh
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------FVKELGKFTKLQSTCLLGGDSM 209 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------~i~~l~~~~~~~~~~l~~sAT~ 209 (333)
..+.|+..... ....+++|+|+||+.+... ....+++++++|+ .+..+...+....+.+++|||.
T Consensus 189 ~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 189 KKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp EECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEEECSSC
T ss_pred EEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCcccHHHHHHHhhcCCeEEEEeCCC
Confidence 88888765433 2234689999999877543 2234566677773 1222223333468889999998
Q ss_pred HH
Q psy18032 210 DN 211 (333)
Q Consensus 210 ~~ 211 (333)
++
T Consensus 263 ~~ 264 (282)
T 1rif_A 263 RD 264 (282)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 74
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.71 E-value=3.7e-18 Score=176.27 Aligned_cols=144 Identities=15% Similarity=0.042 Sum_probs=93.9
Q ss_pred CCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCc
Q psy18032 59 IPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 136 (333)
.|+|+|.+++..++.. .+++++++||+|||+.++..+...+... ...++|||+|+ .|+.|..+.+.+. .++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g---~~~rvLIVvP~-sLl~Qw~~E~~~~---f~l 225 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG---AAERVLIIVPE-TLQHQWLVEMLRR---FNL 225 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS---SCCCEEEECCT-TTHHHHHHHHHHH---SCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC---CCCeEEEEeCH-HHHHHHHHHHHHH---hCC
Confidence 5899999999998874 4799999999999999988877766552 23479999999 9999999988764 366
Q ss_pred eEEEEECCcchHHHHH--HhhCCCCEEEECchHHHHHHHh-ccccccCchhhHH---------------HHHHHhhcccc
Q psy18032 137 QSTCLLGGDSMDNQFA--RLHASPDIVVATPGRFLHIVVE-MELKLSSIQYTFK---------------FVKELGKFTKL 198 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~--~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~lV~---------------~i~~l~~~~~~ 198 (333)
.+..+.|+........ ......+|+|+|++.+...... ..+...++.++|+ ....+..+...
T Consensus 226 ~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 226 RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc
Confidence 6665554432221111 1122579999999887532111 1123344555553 11122222223
Q ss_pred ceeeeecCCCh
Q psy18032 199 QSTCLLGGDSM 209 (333)
Q Consensus 199 ~~~~l~~sAT~ 209 (333)
....+++|||.
T Consensus 306 ~~~~L~LTATP 316 (968)
T 3dmq_A 306 VPGVLLLTATP 316 (968)
T ss_dssp CSSEEESCSSC
T ss_pred CCcEEEEEcCC
Confidence 44578888885
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.63 E-value=1.1e-15 Score=147.32 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=76.3
Q ss_pred CCcHHHHhHHHHH----hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPLV----LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~i----~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|+|+|.++++.+ ..++++++..+||+|||+.++..+...... ....++|||+| ..|+.|..+.++++..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~---~~~~~~LIv~P-~~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE---NELTPSLVICP-LSVLKNWEEELSKFAP-- 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT---TCCSSEEEEEC-STTHHHHHHHHHHHCT--
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc---CCCCCEEEEcc-HHHHHHHHHHHHHHCC--
Confidence 5999999999876 457899999999999999876544443322 22457999999 4688999999998753
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 172 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l 172 (333)
+.++..+.|+... .....++|+|+||+.+....
T Consensus 111 ~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~ 143 (500)
T 1z63_A 111 HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDT 143 (500)
T ss_dssp TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCH
T ss_pred CceEEEEecCchh-----ccccCCcEEEeeHHHHhccc
Confidence 5666666665522 12235899999999987543
No 76
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.57 E-value=1.3e-14 Score=126.27 Aligned_cols=104 Identities=19% Similarity=0.084 Sum_probs=83.7
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCce-
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ- 137 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~- 137 (333)
.|+++|.++++.+++++++++++|||+|||.+++.++... +.+++|++|+++|+.|..+.+.++ ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~----~~~~ 160 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHhC----CCCe
Confidence 5899999999999999999999999999999998887653 457999999999999999988873 677
Q ss_pred EEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 138 STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 138 ~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
+..+.|+.. ...+|+|+||+.+....... ...+.++|
T Consensus 161 v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llI 197 (237)
T 2fz4_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLI 197 (237)
T ss_dssp EEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEE
T ss_pred EEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEE
Confidence 777766653 25789999999987655421 13355566
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.50 E-value=5.2e-14 Score=137.24 Aligned_cols=131 Identities=18% Similarity=0.083 Sum_probs=98.4
Q ss_pred CCCCCcHHHHhHHHH----HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 56 GYKIPTPIQRKTIPL----VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~----i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|| .|+|.|.+++.. +..|+|++++||||+|||++|++|++.. +++++|++||++|+.|+.+.++.+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 46 489999997775 4578999999999999999999999982 5689999999999999999999987
Q ss_pred ccCCceEEEEECCcch---------------------------------HHHH------------------HHhhCCCCE
Q psy18032 132 KFTKLQSTCLLGGDSM---------------------------------DNQF------------------ARLHASPDI 160 (333)
Q Consensus 132 ~~~~~~~~~~~g~~~~---------------------------------~~~~------------------~~l~~~~~I 160 (333)
+..++++..+.|+.+. .... +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7778888887774321 1111 223346899
Q ss_pred EEECchHHHHHHHhccccc-cCchhhHHHHHHHhhccc
Q psy18032 161 VVATPGRFLHIVVEMELKL-SSIQYTFKFVKELGKFTK 197 (333)
Q Consensus 161 lI~TP~rll~~l~~~~~~~-~~l~~lV~~i~~l~~~~~ 197 (333)
||+|+.+|++...+..+.+ .....+| +|+-+++..
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vI--iDEAHnl~d 187 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIV--IDEAHNLDK 187 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEE--ETTGGGGGG
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEE--EecccchHH
Confidence 9999999997765544332 3445555 455444443
No 78
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.40 E-value=2.5e-13 Score=134.95 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=59.7
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc--------
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------- 300 (333)
++|||++++.++.+++.|. |+++..+|| +.+.+++|++|+++|||||| +++..|++
T Consensus 442 vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~ 521 (664)
T 1c4o_A 442 TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGF 521 (664)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSG
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCC
Confidence 5899999999999999997 889999998 23566999999999999998 33444543
Q ss_pred ----cccEEEEccCC---CchhhHHH
Q psy18032 301 ----GRDVVAMARTG---SGKTACFL 319 (333)
Q Consensus 301 ----~~~~~~~grtG---~g~~~~~~ 319 (333)
..|+||+||+| .|+++.|+
T Consensus 522 p~s~~~~iQr~GRagR~~~G~~i~~~ 547 (664)
T 1c4o_A 522 LRSERSLIQTIGRAARNARGEVWLYA 547 (664)
T ss_dssp GGSHHHHHHHHGGGTTSTTCEEEEEC
T ss_pred CCCHHHHHHHHCccCcCCCCEEEEEE
Confidence 25899999999 45555444
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.38 E-value=2.4e-12 Score=130.69 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=81.0
Q ss_pred CCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.++|+|.+++..++ .+.+.++..++|+|||+.++..+...+... .....+|||+| ..|+.|..+.+.+++ .
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~--~~~~~~LIV~P-~sll~qW~~E~~~~~--p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR--RQNGPHIIVVP-LSTMPAWLDTFEKWA--P 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--SCCSCEEEECC-TTTHHHHHHHHHHHS--T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--CCCCCEEEEEC-chHHHHHHHHHHHHC--C
Confidence 57899999998666 789999999999999998776665544332 12446899999 678888999898875 4
Q ss_pred CceEEEEECCcchHHHHHHh------------hCCCCEEEECchHHHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARL------------HASPDIVVATPGRFLHI 171 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l------------~~~~~IlI~TP~rll~~ 171 (333)
++.+....|+.......... ...++|+|+|++.+...
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~ 359 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD 359 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh
Confidence 67777777776655443321 22578999999998754
No 80
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.34 E-value=8.5e-13 Score=128.27 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=58.7
Q ss_pred CCCCCCcHHHHhHHHH----HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRKTIPL----VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~----i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.|| .|+|+|.+++.. +..|++++++||||+|||++|++|++.. +++++|++||++|+.|+.+.++.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 478 699999998654 5678999999999999999999998764 568999999999999999888763
Q ss_pred hccCCceEEEEEC
Q psy18032 131 GKFTKLQSTCLLG 143 (333)
Q Consensus 131 ~~~~~~~~~~~~g 143 (333)
++++..+.|
T Consensus 75 ----~~~~~~l~g 83 (540)
T 2vl7_A 75 ----GLKTGFLIG 83 (540)
T ss_dssp ----TCCEEEC--
T ss_pred ----CCcEEEecC
Confidence 455555444
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.33 E-value=7.4e-12 Score=124.14 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=84.1
Q ss_pred CCcHHHHhHHHHHh---------cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc--cCCceEEEEcccHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVL---------EGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--TSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~---------~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
.++|+|.+++..+. .+.+.|+..++|+|||+.++..+...+...+. +...++|||+|+ .|+.|..+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 58999999999874 45679999999999999887776665544221 123469999997 7888999999
Q ss_pred HHHhccCCceEEEEECCcchHHH--HHHh-hC-----CCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 128 KELGKFTKLQSTCLLGGDSMDNQ--FARL-HA-----SPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~--~~~l-~~-----~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
.++... .+.+..+.||...... .... .. ..+|+|+|++.+..... .+......++|
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI 197 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVI 197 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEE
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEE
Confidence 987644 5667777776543221 1111 11 37899999998875432 22233444555
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.28 E-value=1e-12 Score=130.42 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=61.2
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc--------
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------- 300 (333)
++|||+++..++.+++.|. |+++..+|| +.+.+++|++|+++|||||| +++..|++
T Consensus 448 vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~ 527 (661)
T 2d7d_A 448 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGF 527 (661)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTT
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccC
Confidence 5899999999999999997 889999998 23566999999999999998 33344443
Q ss_pred ----cccEEEEccCC---CchhhHHHhh
Q psy18032 301 ----GRDVVAMARTG---SGKTACFLFY 321 (333)
Q Consensus 301 ----~~~~~~~grtG---~g~~~~~~lp 321 (333)
..|+||+|||| .|++..|+-+
T Consensus 528 p~s~~~~iQr~GRagR~~~G~~i~~~~~ 555 (661)
T 2d7d_A 528 LRSERSLIQTIGRAARNAEGRVIMYADK 555 (661)
T ss_dssp TTSHHHHHHHHHTTTTSTTCEEEEECSS
T ss_pred CCCHHHHHHHhCcccCCCCCEEEEEEeC
Confidence 34899999999 5666655543
No 83
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.21 E-value=1.7e-11 Score=120.78 Aligned_cols=84 Identities=23% Similarity=0.211 Sum_probs=73.2
Q ss_pred CCcHHHHhHHHH----HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPL----VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~----i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|+|.|.+.+.. +.+|+|++++||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.++.+....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~----~~~kvli~t~T~~l~~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE----RKLKVLYLVRTNSQEEQVIKELRSLSSTM 78 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH----HTCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh----cCCeEEEECCCHHHHHHHHHHHHHHhhcc
Confidence 389999998864 5679999999999999999999999998865 25689999999999999999999998877
Q ss_pred CceEEEEECCcc
Q psy18032 135 KLQSTCLLGGDS 146 (333)
Q Consensus 135 ~~~~~~~~g~~~ 146 (333)
+++++.+.|+.+
T Consensus 79 ~~~~~~l~gr~~ 90 (620)
T 4a15_A 79 KIRAIPMQGRVN 90 (620)
T ss_dssp CCCEEECCCHHH
T ss_pred CeEEEEEECCCc
Confidence 899998888765
No 84
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.97 E-value=2.7e-11 Score=99.89 Aligned_cols=94 Identities=15% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCceEEEEEec--chhhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCC
Q psy18032 226 TPGRFLHIVVEM--ELKLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAK 284 (333)
Q Consensus 226 t~~~i~~~~~~~--~~k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~ 284 (333)
++..+.|++... +.|...+ .+|||++++.++.++..|. |+++..+|| +.+.+++|++|+
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 556677777654 2343332 5899999999999999996 899999998 234669999999
Q ss_pred cccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHH
Q psy18032 285 KKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 285 ~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
.++||||| +++..|++ ..|+||+||+| .|.+..|+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEE
Confidence 99999998 34455554 44999999998 34444444
No 85
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.96 E-value=7.5e-11 Score=96.29 Aligned_cols=94 Identities=26% Similarity=0.414 Sum_probs=70.5
Q ss_pred CCCceEEEEEec--chhhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCC
Q psy18032 226 TPGRFLHIVVEM--ELKLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAK 284 (333)
Q Consensus 226 t~~~i~~~~~~~--~~k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~ 284 (333)
++.++.|.+... +.|...+ .+|||++++.++.+++.|. |+.+..+|| +.+.+++|++|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 455677777654 3344333 4899999999999999996 899999998 234569999999
Q ss_pred cccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHH
Q psy18032 285 KKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 285 ~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
+++||||| +++..|++ ..|+||+||+| .|+...|+
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEE
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEe
Confidence 99999998 44555664 45899999998 34444444
No 86
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.91 E-value=1.2e-10 Score=96.13 Aligned_cols=86 Identities=14% Similarity=0.332 Sum_probs=65.2
Q ss_pred CCCceEEEEEecch---hhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCC
Q psy18032 226 TPGRFLHIVVEMEL---KLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPA 283 (333)
Q Consensus 226 t~~~i~~~~~~~~~---k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g 283 (333)
++.++.|++...+. |...+ .+|||++++.++.++..|. |+.+..+|| +.+.+++|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 56678888776532 43333 5899999999999999997 889999998 23556999999
Q ss_pred Ccccccccc--------CCcccccc-------------cccEEEEccCC
Q psy18032 284 KKKYVQVTD--------DTIPLVLE-------------GRDVVAMARTG 311 (333)
Q Consensus 284 ~~~vLvaTd--------~~i~~vi~-------------~~~~~~~grtG 311 (333)
+.++||||| +++..|++ ..|+||+||+|
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~g 132 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTG 132 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC-
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccc
Confidence 999999998 33444442 24889999998
No 87
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.89 E-value=1.2e-10 Score=97.80 Aligned_cols=95 Identities=24% Similarity=0.321 Sum_probs=69.8
Q ss_pred CCCceEEEEEec--chhhhhH----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCc
Q psy18032 226 TPGRFLHIVVEM--ELKLSSI----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKK 285 (333)
Q Consensus 226 t~~~i~~~~~~~--~~k~~~l----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~ 285 (333)
++.++.|.+... +.|...+ .+|||++++.++.++..|. |+++..+|| +.+.+++|++|++
T Consensus 26 ~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~ 105 (191)
T 2p6n_A 26 ASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 105 (191)
T ss_dssp --CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSC
T ss_pred CCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 345677766543 3343333 5899999999999999996 999999998 2345699999999
Q ss_pred ccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHHh
Q psy18032 286 KYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 286 ~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~l 320 (333)
+|||||| ++++.|++ ..|+||+||+| .|.+..|+.
T Consensus 106 ~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~ 159 (191)
T 2p6n_A 106 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN 159 (191)
T ss_dssp SEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEEC
T ss_pred EEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEc
Confidence 9999998 45555664 44999999999 344544443
No 88
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.85 E-value=2.3e-10 Score=95.46 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=65.8
Q ss_pred CCCceEEEEEec--chhhhhH------------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCC
Q psy18032 226 TPGRFLHIVVEM--ELKLSSI------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPA 283 (333)
Q Consensus 226 t~~~i~~~~~~~--~~k~~~l------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g 283 (333)
++.++.|.+... ..|...+ .+|||++++.++.++..|. |+.+..+|| +.+.+++|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 566787777654 2333322 5899999999999999996 899999998 33567999999
Q ss_pred Ccccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 284 KKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 284 ~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
+++|||||| +++..|++ ..|+||+||+|
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~ 138 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 138 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBC
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccC
Confidence 999999998 45555554 45899999998
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.34 E-value=3.5e-10 Score=92.95 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=57.2
Q ss_pred HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------
Q psy18032 244 IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE------- 300 (333)
Q Consensus 244 l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~------- 300 (333)
-.+|||++++.++.+++.|. |+.+..+|| +.+.+++|++|+.++||||| +++..|++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~ 111 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSG 111 (170)
Confidence 46899999999999999997 889999998 23566999999999999998 34555554
Q ss_pred cccEEEEccCC
Q psy18032 301 GRDVVAMARTG 311 (333)
Q Consensus 301 ~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 112 ~~~~qr~GR~~ 122 (170)
T 2yjt_D 112 DTYLHRIGRTA 122 (170)
Confidence 45999999998
No 90
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.83 E-value=4e-10 Score=92.10 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=56.4
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------c
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------G 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~ 301 (333)
.+|||++++.++.++..|. |+.+..+|| +.+.++.|++|+.++||||| +++..|++ .
T Consensus 33 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~ 112 (165)
T 1fuk_A 33 AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKE 112 (165)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGG
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHH
Confidence 4899999999999999997 889999998 23456999999999999998 34555554 4
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.|+||+||+|
T Consensus 113 ~~~qr~GR~g 122 (165)
T 1fuk_A 113 NYIHRIGRGG 122 (165)
T ss_dssp GGGGSSCSCC
T ss_pred HHHHHhcccc
Confidence 5999999999
No 91
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.79 E-value=2.7e-10 Score=97.12 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=57.3
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------c
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------G 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~ 301 (333)
.+|||++++.++.++..|. |+.+..+|| +.+.++.|++|+.+|||||| +++..|++ .
T Consensus 34 ~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~ 113 (212)
T 3eaq_A 34 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAE 113 (212)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHH
Confidence 5899999999999999996 999999998 33456999999999999998 45666665 4
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.|+||+||+|
T Consensus 114 ~~~qr~GR~g 123 (212)
T 3eaq_A 114 AYQHRSGRTG 123 (212)
T ss_dssp HHHHHHTTBC
T ss_pred HHHHHhcccC
Confidence 5899999998
No 92
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.70 E-value=7.2e-10 Score=99.38 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=57.4
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------c
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------G 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~ 301 (333)
.+|||++++.++.++..|. |+.+..+|| +.+.++.|++|+.+|||||| +++..||+ .
T Consensus 31 ~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~ 110 (300)
T 3i32_A 31 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAE 110 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTT
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHH
Confidence 5899999999999999995 889999998 33456999999999999999 55666665 5
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.|+||+||||
T Consensus 111 ~y~Qr~GRag 120 (300)
T 3i32_A 111 AYQHRSGRTG 120 (300)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHccCcC
Confidence 5899999999
No 93
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.38 E-value=2.8e-07 Score=90.61 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=61.5
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHH--HHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCc
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKT--ACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT--~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 136 (333)
++.|..+++.++.+++++++|++||||| ++++++.+..+.. ..+.++++++||...|.++.+.+...+...++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999 7788888876532 23568999999999999999888876555443
No 94
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.60 E-value=0.00016 Score=71.51 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=53.9
Q ss_pred CCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.+++-|.+|+..++..++ .+++||+|||||....-.+.+.+.. +.++|+++||..=+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEcCchHHHHHHHHHHHh
Confidence 468899999999988776 7999999999997655444444433 56899999999999999888876
No 95
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=97.41 E-value=4.6e-05 Score=67.04 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=45.9
Q ss_pred HHHhhcchhhHHHHHHHhc---CCCcccccc-----ch-HHHhhhCCC-Ccc-cccccc--------CCcccccc-----
Q psy18032 245 QLSLTDFKQDTSRIALDLV---GDSTEMIHK-----QR-QSVRKWDPA-KKK-YVQVTD--------DTIPLVLE----- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~---g~~~~~lh~-----~r-~~l~~f~~g-~~~-vLvaTd--------~~i~~vi~----- 300 (333)
++||++++..++.+...|. |+++..+|| +| +.+++|+++ +.+ +|++|+ ...+.||+
T Consensus 115 vlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~w 194 (271)
T 1z5z_A 115 IAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWW 194 (271)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCS
T ss_pred EEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCC
Confidence 4789999999999999884 899999998 34 456999998 787 688887 34444553
Q ss_pred --cccEEEEccCC-Cchh
Q psy18032 301 --GRDVVAMARTG-SGKT 315 (333)
Q Consensus 301 --~~~~~~~grtG-~g~~ 315 (333)
..|.|++||++ -|.+
T Consensus 195 np~~~~Q~~gR~~R~Gq~ 212 (271)
T 1z5z_A 195 NPAVEDQATDRVYRIGQT 212 (271)
T ss_dssp CTTTC-------------
T ss_pred ChhHHHHHHHhccccCCC
Confidence 55999999998 3433
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.21 E-value=0.001 Score=65.42 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
..+++.|.+++..++.+.-.+++||+|||||....- ++..+.. ..+.++++++||..-+.++.+.+...
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~---~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR---QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHT---SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHH---cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 357899999999998877799999999999976543 3333332 13568999999999999998888753
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0012 Score=66.68 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=54.2
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
..+++.|.+++..++.+.-++++||+|||||....--+ ..+... .+.++++++||..-+.++.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~---~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI---HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH---HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC---CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45689999999999887779999999999997654333 333221 2458999999999999999988874
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.98 E-value=0.0018 Score=61.20 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=51.5
Q ss_pred HhCCCCCCcHHHHhHHHHHhcC----C-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 53 LKRGYKIPTPIQRKTIPLVLEG----R-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 53 ~~~g~~~~~~~Q~~~i~~i~~g----~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
.-+.|..+++-|.+++..++.. . .+++.|+.|||||... ..++..+... ....+++++||..-+..+.+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---TCCCEEEEESSHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---CCceEEEecCcHHHHHHHHhhh
Confidence 4467889999999999987643 3 8999999999999544 3444444431 1236999999999888776544
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.92 E-value=0.0028 Score=64.01 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=53.1
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.+++.|.+++..++.+.-.+++||+|||||.... .++..+... .+.++++++||..-+.++.+.+..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT---CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4689999999999887779999999999997544 333333321 356899999999999999888775
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.79 E-value=0.0035 Score=60.94 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=49.5
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
+++.|.+++..++.+..+++.||+|||||... ..++..+.. .+.++++++||...+..+.+.
T Consensus 190 L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 190 LSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES----LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH----TTCCEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh----cCCeEEEecCcHHHHHHhHhh
Confidence 79999999999999999999999999999643 233333333 366899999999999887653
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.76 E-value=0.003 Score=62.14 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=55.3
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
..+++-|.+++.. ....++|.|+.|||||.+..--+...+.... ....+.|++++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 5689999999973 3567999999999999877655555554321 123479999999999999999998864
No 102
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.45 E-value=0.0052 Score=60.93 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=55.2
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
.+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... ....+.|+++.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999975 3568999999999999877665555554421 1234799999999999999999988643
No 103
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.10 E-value=0.0096 Score=63.12 Aligned_cols=69 Identities=28% Similarity=0.293 Sum_probs=56.1
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.+|+-|.++|..- +.+++|.|..|||||.+.+--++..+.... +-...+.+++++|++.+.++.+.+..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 3899999999754 789999999999999887776776666532 11234899999999999999998887
No 104
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.08 E-value=0.015 Score=58.16 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... ....+.|+++.|+..|.++.+.+..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 5689999999875 3568999999999999877666665555321 123479999999999999999988763
No 105
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.79 E-value=0.0044 Score=55.07 Aligned_cols=37 Identities=30% Similarity=0.635 Sum_probs=29.5
Q ss_pred ccccccc--ccEEEEccCCCchhhHHHhhhhhhccCCCC
Q psy18032 295 IPLVLEG--RDVVAMARTGSGKTACFLFYFFFRFDRGNF 331 (333)
Q Consensus 295 i~~vi~~--~~~~~~grtG~g~~~~~~lp~~~~~~~~~~ 331 (333)
+|.++++ .++.-++.||+|||.+|++|+++++.....
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~ 161 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 161 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCC
Confidence 3444443 678889999999999999999999976543
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.39 E-value=0.061 Score=52.40 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=56.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
.|+|+|...+..+-..+-+++..+-|+|||.+...-++..+... .+..+++++|+.+.|.++++.++.+.+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---SSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---CCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 37999999998875567799999999999987765555554442 255899999999999999998887654
No 107
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.29 E-value=0.066 Score=49.14 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=57.4
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|+++-|..+++.++.+.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 4899999999877555679999999999998776666554433 23568999999999999999888877543
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.98 E-value=0.059 Score=43.46 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=34.4
Q ss_pred cHHHHhHHHHHh---------cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 61 TPIQRKTIPLVL---------EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 61 ~~~Q~~~i~~i~---------~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
++.|.+++..+. .|+.+++.||+|+|||.... .+...+... .+..+ +..+..++..+....+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~-~i~~~~~~~---~g~~~-~~~~~~~~~~~~~~~~ 86 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV-ATLKAIYEK---KGIRG-YFFDTKDLIFRLKHLM 86 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH-HHHHHHHHH---SCCCC-CEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH-HHHHHHHHH---cCCeE-EEEEHHHHHHHHHHHh
Confidence 345555555443 37889999999999996443 233333211 23233 3345556655554433
No 109
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.84 E-value=0.22 Score=40.73 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=52.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+..++...+. ...+|||+| +....+ +++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~G-ldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKG-LDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTT-CCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcC-CCcccC
Confidence 457999999999999999988873 788999999987766554442 258999999 444443 566666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 124 ~~VI 127 (191)
T 2p6n_A 124 QHVI 127 (191)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6665
No 110
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.81 E-value=0.022 Score=47.88 Aligned_cols=33 Identities=39% Similarity=0.787 Sum_probs=26.4
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-++.||+|||.+|++|+++++..
T Consensus 52 ~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~ 84 (228)
T 3iuy_A 52 PIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDS 84 (228)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-
T ss_pred HHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 444455677888999999999999999988753
No 111
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.78 E-value=0.02 Score=48.79 Aligned_cols=34 Identities=38% Similarity=0.644 Sum_probs=28.5
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-++.||+|||.+|++|+++++..
T Consensus 60 i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 60 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp HHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 4555566788888999999999999999998764
No 112
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.72 E-value=0.025 Score=48.19 Aligned_cols=33 Identities=39% Similarity=0.720 Sum_probs=26.8
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-.+.||+|||.+|++|+++++..
T Consensus 61 ~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 93 (245)
T 3dkp_A 61 PVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ 93 (245)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS
T ss_pred HHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 444455577788999999999999999998864
No 113
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.71 E-value=0.022 Score=53.21 Aligned_cols=35 Identities=46% Similarity=0.748 Sum_probs=29.3
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.+|.++++.++.-++.||+|||++|++|+++++..
T Consensus 86 ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 86 SIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 34556667788999999999999999999998754
No 114
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.59 E-value=0.036 Score=45.65 Aligned_cols=33 Identities=39% Similarity=0.794 Sum_probs=26.9
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-.+.||+|||.+|++|+++++..
T Consensus 35 ~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~ 67 (206)
T 1vec_A 35 PIALSGRDILARAKNGTGKSGAYLIPLLERLDL 67 (206)
T ss_dssp HHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT
T ss_pred HHHccCCCEEEECCCCCchHHHHHHHHHHHhcc
Confidence 334445577888999999999999999998865
No 115
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.53 E-value=0.016 Score=50.14 Aligned_cols=34 Identities=47% Similarity=0.597 Sum_probs=27.6
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-++.||+|||.+|++|+++.+.+
T Consensus 85 i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 85 IRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp HHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 3445556677788999999999999999998764
No 116
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.52 E-value=0.032 Score=52.04 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=39.6
Q ss_pred ccccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+.++..+|++.+--++..+.|.+. .+..|.-++...++ -.+.+|+.||+|+|||+.+
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 3456778999999888888887653 23334333332221 2478999999999999744
No 117
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.45 E-value=0.039 Score=46.56 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=27.1
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-.+.||+|||.+|++|+++++..
T Consensus 56 ~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 88 (230)
T 2oxc_A 56 PLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL 88 (230)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT
T ss_pred HHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 344555677888999999999999999998864
No 118
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.40 E-value=0.041 Score=46.02 Aligned_cols=34 Identities=38% Similarity=0.594 Sum_probs=27.5
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
+.+.++.++.-.+.||+|||.+|++|+++++...
T Consensus 46 ~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~ 79 (224)
T 1qde_A 46 MPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS 79 (224)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT
T ss_pred HHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc
Confidence 3444556778889999999999999999988653
No 119
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.26 E-value=0.033 Score=46.58 Aligned_cols=34 Identities=32% Similarity=0.578 Sum_probs=27.7
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-.+.||+|||.+|++|+++++..
T Consensus 35 i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~ 68 (219)
T 1q0u_A 35 IPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP 68 (219)
T ss_dssp HHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 3444555677788999999999999999999865
No 120
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.22 E-value=0.029 Score=47.45 Aligned_cols=34 Identities=47% Similarity=0.674 Sum_probs=28.1
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-.+.||+|||.+|++|+++.+.+
T Consensus 56 i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 56 IGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 4555566678889999999999999999998743
No 121
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.08 E-value=0.035 Score=47.64 Aligned_cols=34 Identities=44% Similarity=0.752 Sum_probs=27.5
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-.+.||+|||.+|++|+++++..
T Consensus 74 i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 74 IPLALQGRDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 3444555677888999999999999999998754
No 122
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.03 E-value=0.034 Score=47.59 Aligned_cols=35 Identities=49% Similarity=0.682 Sum_probs=28.8
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.++.++++.++.-++.||+|||.+|++|+++++..
T Consensus 53 ~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~ 87 (253)
T 1wrb_A 53 AIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVC 87 (253)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 34555666788889999999999999999998754
No 123
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=92.92 E-value=0.035 Score=47.10 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=26.7
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.++++.++.-.+.||+|||.+|++|+++++..
T Consensus 62 ~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~ 94 (237)
T 3bor_A 62 IPCIKGYDVIAQAQSGTGKTATFAISILQQLEI 94 (237)
T ss_dssp HHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT
T ss_pred HHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 334445567788999999999999999999864
No 124
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.80 E-value=0.5 Score=37.72 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=51.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++..+..+.+.+.. .++.+..++|+.+..++...+. + ..+|||+|. .+.. .+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~-Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCAR-GIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCT-TTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhc-CCCcccC
Confidence 45899999999999999888876 4788999999988766654442 2 589999993 3322 3455555
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 104 ~~Vi 107 (175)
T 2rb4_A 104 TIVV 107 (175)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 5555
No 125
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=92.61 E-value=0.49 Score=37.32 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=51.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+.+.+.. .++.+..++|+.+..++...+. + ..+|||+| +.+.. .+++.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAAR-GIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTT-TCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCchhcC
Confidence 45799999999999999998887 4788999999987766544432 2 47899999 33333 3566666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 105 ~~Vi 108 (163)
T 2hjv_A 105 SLVI 108 (163)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6655
No 126
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.27 E-value=0.068 Score=50.33 Aligned_cols=29 Identities=28% Similarity=0.627 Sum_probs=25.6
Q ss_pred ccEEEEccCCCchhhHHHhhhhhhccCCC
Q psy18032 302 RDVVAMARTGSGKTACFLFYFFFRFDRGN 330 (333)
Q Consensus 302 ~~~~~~grtG~g~~~~~~lp~~~~~~~~~ 330 (333)
.++.-.|.||+|||.+|++|+++++....
T Consensus 132 ~~~l~~a~TGsGKT~~~~l~il~~l~~~~ 160 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPAN 160 (479)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHTTCCTTS
T ss_pred CcEEEEcCCCCchhHHHHHHHHHHHhhcC
Confidence 57778999999999999999999987654
No 127
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=91.97 E-value=0.66 Score=36.60 Aligned_cols=70 Identities=11% Similarity=0.223 Sum_probs=51.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.+++++-+..+.+.++. .++.+..++|+.+..++...+. + ..+|||+| +.+.. .+++.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLAR-GIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGTT-TCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhhc-CCCcccC
Confidence 45899999999999999998887 4778899999987766544432 2 48999999 33333 3456666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 100 ~~Vi 103 (165)
T 1fuk_A 100 SLVI 103 (165)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6655
No 128
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.77 E-value=0.067 Score=43.97 Aligned_cols=33 Identities=45% Similarity=0.727 Sum_probs=26.5
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-.+.||+|||.+|++|+++.+..
T Consensus 33 ~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~ 65 (207)
T 2gxq_A 33 PLALEGKDLIGQARTGTGKTLAFALPIAERLAP 65 (207)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCEEEECCCCChHHHHHHHHHHHHHhh
Confidence 334445577788999999999999999998853
No 129
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.73 E-value=0.83 Score=36.41 Aligned_cols=70 Identities=13% Similarity=0.262 Sum_probs=51.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+.+.+.. .++.+..++|+.+..++...+. + ..+|||+|. .+.. .+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGR-GMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCST-TCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chhc-CcchhhC
Confidence 45899999999999999998887 4788999999987766544432 2 589999994 2222 3556666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 101 ~~Vi 104 (172)
T 1t5i_A 101 NIAF 104 (172)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6655
No 130
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=91.64 E-value=0.68 Score=42.21 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=53.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.+++++-+..+++.++. .++.+..++|+.+..++...+. ...+|||+| +.+..+ +++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~G-idip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAARG-LDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHTT-SCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----ChhhcC-CCcccC
Confidence 56899999999999999998887 4788999999988766554442 258999999 555544 566667
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 346 ~~Vi 349 (417)
T 2i4i_A 346 KHVI 349 (417)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6666
No 131
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.62 E-value=0.095 Score=43.61 Aligned_cols=33 Identities=33% Similarity=0.586 Sum_probs=26.8
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.++++.++.-.+.||+|||.+|++|+++.+..
T Consensus 46 ~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~ 78 (220)
T 1t6n_A 46 PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP 78 (220)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC
T ss_pred HHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc
Confidence 444455567788899999999999999998765
No 132
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.58 E-value=0.15 Score=39.59 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=17.6
Q ss_pred hcCCcEEEECCCCcHHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456789999999999997554
No 133
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.44 E-value=0.13 Score=39.90 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=16.8
Q ss_pred HhcCCcEEEECCCCcHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~ 90 (333)
...+.++++.||+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44567899999999999964
No 134
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.20 E-value=0.067 Score=49.26 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=36.7
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.-+|++.|=-++..+.|++. .+..|--++..-+ .-.+.+|+.||+|+|||+.+-
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHHH
Confidence 35667999998777777777653 1223322222211 124789999999999997443
No 135
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.85 E-value=0.2 Score=46.75 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=32.7
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.++.|+.|+|||.... +.+.. ...+|++||++++.++.+.+..
T Consensus 164 ~~I~G~aGsGKTt~I~----~~~~~------~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL----SRVNF------EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHHH----HHCCT------TTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHH----HHhcc------CCeEEEeCCHHHHHHHHHHhhh
Confidence 7899999999997443 22211 2469999999999998887754
No 136
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.54 E-value=0.096 Score=45.51 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=35.9
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH--HhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL--VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+..+|+++.-.+...+.+.+.= ..|. ...+.+.. +..++.+++.||+|+|||...-
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVV-ELPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHT-HHHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHH-HHHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 355678999988888877776531 1010 01112222 2345789999999999996443
No 137
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.54 E-value=1.3 Score=42.37 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=57.0
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
.+.++||.++++.-+..+++.++.... .++.+..++|+.+..++...+. ...+|||+| +.+.. .+++.+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~~-GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhhc-CCCccc
Confidence 356899999999999999999987532 3788899999988766554443 358999999 34443 477888
Q ss_pred chhhHH
Q psy18032 182 IQYTFK 187 (333)
Q Consensus 182 l~~lV~ 187 (333)
+.++|.
T Consensus 411 v~~VI~ 416 (563)
T 3i5x_A 411 VHEVLQ 416 (563)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 138
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=90.52 E-value=0.81 Score=37.88 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=53.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..++...+. + ..+|+|+| +.... .+++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAAR-GLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTC-SSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhhc-CCCCccC
Confidence 458999999999999999988873 788999999988776654443 3 48899999 33333 4667777
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 101 ~~Vi 104 (212)
T 3eaq_A 101 DLVV 104 (212)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7766
No 139
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.26 E-value=0.11 Score=48.21 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=36.4
Q ss_pred cccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+..+|++.|--++..+.+.+. .+..|--++..- +.-.+.+|+.||+|+|||+.+-
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHHH
Confidence 456678999998777777766552 122222222211 1123679999999999997443
No 140
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.07 E-value=0.67 Score=37.53 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---h-CCCC
Q psy18032 84 GSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---H-ASPD 159 (333)
Q Consensus 84 GsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~-~~~~ 159 (333)
.+.|-. +++-++.... .+.++||.++++.-+..+.+.++. .++.+..++|+.+..++...+ . ...+
T Consensus 29 ~~~K~~-~L~~ll~~~~-----~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 98 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNATG-----KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSP 98 (185)
T ss_dssp GGGHHH-HHHHHHHHC------CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSSS
T ss_pred cHHHHH-HHHHHHHhcC-----CCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 456643 3444444321 256899999999999999998887 478899999987655543333 2 2588
Q ss_pred EEEECchHHHHHHHhccccccCchhhH
Q psy18032 160 IVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 160 IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
|||+| +.+..+ +++..+.++|
T Consensus 99 vLvaT-----~~~~~G-ldi~~~~~VI 119 (185)
T 2jgn_A 99 ILVAT-----AVAARG-LDISNVKHVI 119 (185)
T ss_dssp EEEEE-----C-------CCCSBSEEE
T ss_pred EEEEc-----ChhhcC-CCcccCCEEE
Confidence 99999 333333 4555565555
No 141
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.94 E-value=0.71 Score=37.55 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.4
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+++++.||+|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 689999999999997543
No 142
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=89.89 E-value=0.11 Score=50.81 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=31.2
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+++.+.++.++.-++.||+|||.+|++|+++++..
T Consensus 179 ~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~ 213 (618)
T 2whx_A 179 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK 213 (618)
T ss_dssp CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 47888889999999999999999999999988653
No 143
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.84 E-value=0.32 Score=43.32 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=33.9
Q ss_pred cCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|++++-.+...+.|.+. ....|...+. .....+.+++.||+|+|||..+-
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~----~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG----KRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT----TCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC----CCCCCceEEEECCCCccHHHHHH
Confidence 4567899998888887777653 0111111100 01123679999999999996443
No 144
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=89.53 E-value=2.4 Score=39.99 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=38.1
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.|....+.+-||||||+... .+.. . .+..+|||+|+...|.+.++.++.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a--~l~~--~----~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA--EIAE--R----HAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH--HHHH--H----SSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHH--HHHH--H----hCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 35568899999999996432 2211 1 12358999999999999999999874
No 145
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.46 E-value=0.16 Score=43.38 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=31.7
Q ss_pred CCcccccCCCHHHHHHHHhC--CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 36 GGGFQSFGLGFEVLKGVLKR--GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+|+++.-.+...+.+.+. .+..|..+.... +...+.+++.||+|+|||...-
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHHH
Confidence 45788888777777777553 111121111110 1234679999999999996543
No 146
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.41 E-value=0.2 Score=46.47 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=38.0
Q ss_pred ccccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+.-+|++.|=-++..+.|++. .+..|--++..-+ --.+.+|+.||+|+|||+.+-
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHH
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHH
Confidence 3456778999998666666666653 2333433332221 123789999999999997443
No 147
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.38 E-value=0.39 Score=44.58 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=32.1
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
...++++.|+||||||... .+++..+.. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~----~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL----RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH----TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH----CCCcEEEEeCCCchhH
Confidence 3568999999999999864 334444333 2567888999988864
No 148
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=89.33 E-value=1.7 Score=41.85 Aligned_cols=83 Identities=14% Similarity=0.281 Sum_probs=61.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++|+.-+..+++.++.... .++.+..++|+.+..++.+.+. ...+|||+| +.+.. .+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~~-GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhhc-CCCcccC
Confidence 56899999999999999999987532 3788899999988766544443 358999999 34443 4778888
Q ss_pred hhhHH---------HHHHHhhcc
Q psy18032 183 QYTFK---------FVKELGKFT 196 (333)
Q Consensus 183 ~~lV~---------~i~~l~~~~ 196 (333)
.++|. ++..+++..
T Consensus 361 ~~VI~~~~p~s~~~y~Qr~GRag 383 (579)
T 3sqw_A 361 HEVLQIGVPSELANYIHRIGRTA 383 (579)
T ss_dssp CEEEEESCCSSTTHHHHHHTTSS
T ss_pred CEEEEcCCCCCHHHhhhhccccc
Confidence 88775 666666543
No 149
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.33 E-value=0.16 Score=44.81 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=34.3
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|++++-.+...+.+.+. ...|.......... +..++.+++.||+|+|||..+-
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~-v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQEL-VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHH-HHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHH-HHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 4557899998777777777653 00010000000111 2345789999999999997543
No 150
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.30 E-value=0.2 Score=46.87 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=37.3
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.-+|++.+--++..+.|++. .+..|-.++..- +.--+.+|+.||+|+|||+.+-
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHHH
Confidence 46678999999888888888763 122222222111 1224789999999999997443
No 151
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.14 E-value=0.17 Score=47.16 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=36.2
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+..+|++.+--++..+.|.+. .+..|.-++..- +.-.+.+|+.||+|+|||+.+-
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHHH
Confidence 46678999998777777666653 122222222211 1123789999999999997543
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.04 E-value=0.43 Score=40.09 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=30.6
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.|.-+++.||+|+|||....--+...... +..++++.-. ....++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-----~~~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM-----GEPGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT-----TCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEcc-CCHHHHHHHHHH
Confidence 46779999999999997543333332222 4467777643 334555555543
No 153
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.70 E-value=1.6 Score=40.64 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=46.3
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHH----
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN---- 149 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---- 149 (333)
-+++++++|+|||....--+ ..+.. .|.+++++. |.+.-+. ++++.++...++.+.....+.+...
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~----~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~~~~~dp~~i~~~ 173 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK----RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGNPQEKDAIKLAKE 173 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT----TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECCTTCCCHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH----CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEecCCCCCHHHHHHH
Confidence 48899999999996544222 22222 255676666 4555443 3445555566776654433333221
Q ss_pred HHHHhh-CCCCEE-EECchHH
Q psy18032 150 QFARLH-ASPDIV-VATPGRF 168 (333)
Q Consensus 150 ~~~~l~-~~~~Il-I~TP~rl 168 (333)
...... ++++++ |=||+++
T Consensus 174 al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 174 GVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHhCCCCEEEEECCCcc
Confidence 122222 346655 6688864
No 154
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.61 E-value=0.89 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCcHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~ 90 (333)
.|+.+.+.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688899999999999953
No 155
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=88.46 E-value=0.7 Score=41.94 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=52.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+++.++. .+..+..++|+.+..++...+ .+ ..+|||+| +.+.. .+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSK----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCAR-GIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTS-SCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Ccccc-CCCccCC
Confidence 46899999999999999999987 377888999998876665444 22 48899999 34433 3566666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 336 ~~Vi 339 (412)
T 3fht_A 336 SVVI 339 (412)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6665
No 156
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.40 E-value=0.74 Score=40.67 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=16.2
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
++++++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999996544
No 157
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.38 E-value=0.48 Score=39.87 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=27.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
|.=+++.|++|+|||...+-. +.++.. .+.+++++.|...
T Consensus 12 G~i~litG~mGsGKTT~ll~~-~~r~~~----~g~kVli~~~~~d 51 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRR-LHRLEY----ADVKYLVFKPKID 51 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHH-HHHHHH----TTCCEEEEEECCC
T ss_pred cEEEEEECCCCCcHHHHHHHH-HHHHHh----cCCEEEEEEeccC
Confidence 455888999999999755433 333332 2567888877653
No 158
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.80 E-value=1.3 Score=41.18 Aligned_cols=85 Identities=21% Similarity=0.165 Sum_probs=43.9
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchH----H
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD----N 149 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~ 149 (333)
-++++||+|+|||....--+. .+.. .+.+++++. +.+.-+.+ .+..++...++.+.....+.+.. .
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~----~G~kVllv~~D~~r~~a~e---qL~~~~~~~gv~~~~~~~~~dp~~i~~~ 170 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKK----RGYKVGLVAADVYRPAAYD---QLLQLGNQIGVQVYGEPNNQNPIEIAKK 170 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHH----TTCCEEEEEECCSCHHHHH---HHHHHHHTTTCCEECCTTCSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH----cCCeEEEEecCccchhHHH---HHHHHHHhcCCceeeccccCCHHHHHHH
Confidence 488899999999964442222 2222 255666665 44444433 34444445566554433333321 1
Q ss_pred HHHHhh-CCCCE-EEECchHH
Q psy18032 150 QFARLH-ASPDI-VVATPGRF 168 (333)
Q Consensus 150 ~~~~l~-~~~~I-lI~TP~rl 168 (333)
...... +++++ +|-||+++
T Consensus 171 al~~a~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRH 191 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCS
T ss_pred HHHHHHhcCCCEEEEECCCCc
Confidence 222222 34555 57788863
No 159
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.64 E-value=0.65 Score=37.64 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=26.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTR 117 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~ 117 (333)
|+=.++.||.|+|||...+-- +.+... .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~-~~~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSF-VEIYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHH-HHHHHH----TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHH-HHHHHH----CCCeEEEEeecc
Confidence 555789999999999765433 333222 255788888884
No 160
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.62 E-value=0.15 Score=43.53 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=32.6
Q ss_pred cCCCcccccCCCHHHHHHHHhC-C-CCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKR-G-YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~-g-~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|+++.-.+...+.+.+. . +..|...+... ....+.+++.||+|+|||...-
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHH
Confidence 3456899998888777766542 0 11111111100 1113579999999999996443
No 161
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.43 E-value=0.74 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=16.6
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+.++++.||+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999997544
No 162
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.39 E-value=0.12 Score=46.08 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=34.5
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHh-----cCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL-----EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-----~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|+++.-.+...+.|.+.= . .|. ..|.+. ..+.+++.||+|+|||..+-
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i-~--~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAV-I--LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHT-H--HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHH-H--HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 55678999988888888876631 0 011 011111 13579999999999997543
No 163
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=87.31 E-value=0.63 Score=38.06 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=26.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTR 117 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~ 117 (333)
|+=.++.||.|||||...+-- +.+... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~-a~r~~~----~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRR-IRRAKI----AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHH-HHHHHH----TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHH-HHHHHH----CCCEEEEEEecc
Confidence 444788999999999765533 333332 367899998884
No 164
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=87.00 E-value=0.27 Score=44.88 Aligned_cols=31 Identities=35% Similarity=0.618 Sum_probs=25.2
Q ss_pred ccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 298 VLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 298 vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++++.++.-.+.||+|||.+|++|+++.+..
T Consensus 74 ~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~ 104 (414)
T 3eiq_A 74 CIKGYDVIAQAQSGTGKTATFAISILQQIEL 104 (414)
T ss_dssp HHTTCCEEECCCSCSSSHHHHHHHHHHHCCT
T ss_pred HhCCCCEEEECCCCCcccHHHHHHHHHHHhh
Confidence 3444566777899999999999999998864
No 165
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.27 E-value=1.2 Score=38.57 Aligned_cols=55 Identities=9% Similarity=0.006 Sum_probs=33.0
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHH-HhHHHHH-hcCCcEEEECCCCcHHHHHHH
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQ-RKTIPLV-LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~i-~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+|+++.-.+...+.+.+.= . .+.. .+.+..+ ..++.+++.||+|+|||..+-
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i-~--~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV-I--LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT-H--HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH-H--hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 4568999887787777776531 0 0000 0000011 135789999999999997543
No 166
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=86.21 E-value=0.24 Score=41.75 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=27.4
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-+|.||+|||.+|.+++++....
T Consensus 70 i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~ 103 (235)
T 3llm_A 70 LEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQ 103 (235)
T ss_dssp HHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhh
Confidence 3445567788899999999999999999887643
No 167
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=86.16 E-value=0.14 Score=40.83 Aligned_cols=71 Identities=14% Similarity=0.300 Sum_probs=50.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC----CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA----SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+.+.++. .++.+..++|+.+..++...+.. ..+|||+| +.+..+ +++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~G-id~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLRE----AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAARG-IDIPDV 99 (170)
Confidence 45899999999999999888876 37788888888776555444322 47899999 333333 556666
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
.++|.
T Consensus 100 ~~Vi~ 104 (170)
T 2yjt_D 100 SHVFN 104 (170)
Confidence 66663
No 168
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=85.78 E-value=2.2 Score=37.45 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=53.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.+++++-+..+.+.+.. .++.+..++|+.+..++...+. ...+|+|+| +.... .+++.++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-Cccccce
Confidence 45899999999999998888775 4788999999988766655443 258999999 33333 4677777
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
.++|.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 77774
No 169
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.70 E-value=0.62 Score=39.13 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=29.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
|.-+++.|++|+|||...+--+.+.... .+..+++++-. +-..++.+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~----~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE----YGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH----HCCCEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh----cCCCceeeccc-CCHHHHHHHHHH
Confidence 4669999999999995443323332222 13346666533 335555555544
No 170
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.47 E-value=0.96 Score=43.03 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=25.5
Q ss_pred HHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHH
Q psy18032 50 KGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 50 ~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~ 89 (333)
..|.+.|. +++.+..-+.. +..|..++++||||||||.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTT 275 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 34555553 23444444443 5678899999999999995
No 171
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.45 E-value=0.55 Score=41.67 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=21.1
Q ss_pred HhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 65 RKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 65 ~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+...+..+.++++.||+|+|||...-
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 3444456668899999999999996443
No 172
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=85.38 E-value=0.29 Score=44.28 Aligned_cols=33 Identities=39% Similarity=0.608 Sum_probs=26.2
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-.+.||+|||.+|++|+++.+..
T Consensus 53 ~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~ 85 (394)
T 1fuu_A 53 MPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT 85 (394)
T ss_dssp HHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT
T ss_pred HHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc
Confidence 334444567778899999999999999998865
No 173
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.34 E-value=0.39 Score=42.77 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=19.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
+.++++.||+|+|||++.-. ++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 35799999999999975543 344444
No 174
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.22 E-value=1.1 Score=42.51 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 48 VLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 48 l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
+.+.+.+ .+-.-...=..+...+..+.++++.||+|+|||..+
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3444443 333334444556666778899999999999999643
No 175
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.17 E-value=0.21 Score=42.64 Aligned_cols=53 Identities=15% Similarity=0.012 Sum_probs=33.1
Q ss_pred cCCCcccccCCCHHHHHHHHhCC--CCCCcHHHHhHHHHHh--cCCcEEEECCCCcHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRG--YKIPTPIQRKTIPLVL--EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~--~g~d~l~~a~TGsGKT~~~ 91 (333)
.+..+|+++.-.+.....+++.- |.. ...+..+- -.+.+++.||+|+|||...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 45678999987777776666531 111 12222211 1245999999999999643
No 176
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.10 E-value=0.15 Score=44.40 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=28.3
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHH-HhHHHHH--hcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQ-RKTIPLV--LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~i--~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|++++-.+++.+.|.+.= . .|.. .+++..+ .-.+.+++.||+|+|||...-
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i-~--~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAI-L--APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp --------CCHHHHHHHHHHHHH-T--HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 35678999998788887776531 1 1111 1222221 112459999999999996433
No 177
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.04 E-value=0.75 Score=36.45 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.2
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
..+++.||+|+|||....
T Consensus 44 ~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CceEEECCCCCCHHHHHH
Confidence 579999999999996543
No 178
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.03 E-value=3.1 Score=38.51 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=42.9
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchH----H
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD----N 149 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~ 149 (333)
-+.+.+++|+|||.....-+.. +.. .+.+++++. +.+..+.++...+. ...++.+.....+.+.. +
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~-l~~----~g~~Vllvd~D~~r~aa~~qL~~~~---~~~gv~v~~~~~~~~p~~i~~~ 171 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALY-YKG----KGRRPLLVAADTQRPAAREQLRLLG---EKVGVPVLEVMDGESPESIRRR 171 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HHT----TTCCEEEEECCSSCHHHHHHHHHHH---HHHTCCEEECCTTCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH----cCCeEEEeeccccCchhHHHHHHhc---ccCCccEEecCCCCCHHHHHHH
Confidence 4778899999999644422221 111 244566554 44454544333332 23455554332222221 2
Q ss_pred HHHHh-hCCCC-EEEECchHH
Q psy18032 150 QFARL-HASPD-IVVATPGRF 168 (333)
Q Consensus 150 ~~~~l-~~~~~-IlI~TP~rl 168 (333)
....+ .++++ |||=||+++
T Consensus 172 ~l~~~~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 172 VEEKARLEARDLILVDTAGRL 192 (425)
T ss_dssp HHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHHCCCCEEEEcCCCcc
Confidence 22333 24565 678899875
No 179
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.92 E-value=0.77 Score=41.90 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=29.4
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
.+.++++.||||||||...-.-+.+.. . .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~----~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-M----QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-T----TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-H----CCCEEEEEeCCcCH
Confidence 457899999999999965544333332 2 25678888887663
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.74 E-value=1 Score=37.30 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=16.4
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+++.||+|+|||....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999996443
No 181
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.74 E-value=1 Score=37.36 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=33.2
Q ss_pred HHHHHHHhCCCCCCcHHHHhHHHHHhcC----CcEEEECCCCcHHHHHHHHHHHHHh
Q psy18032 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEG----RDVVAMARTGSGKTACFLIPMLEKL 99 (333)
Q Consensus 47 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~g----~d~l~~a~TGsGKT~~~~l~~l~~l 99 (333)
.|.+.|+-.|++ |... ...+..++++ +.+++.||+|+|||..+ ..++..+
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 566666655555 5555 5666666665 24999999999999643 4455544
No 182
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=84.68 E-value=1.7 Score=49.50 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=35.2
Q ss_pred CCHHHHHHHHhCCCCCCcHHH-Hh---HHHHHhcCCcEEEECCCCcHHHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQ-RK---TIPLVLEGRDVVAMARTGSGKTACFLI 93 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q-~~---~i~~i~~g~d~l~~a~TGsGKT~~~~l 93 (333)
+.+.+.+.+.+.|+. +++.+ .+ ....+.....++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 455677788888887 56654 22 333445567899999999999988764
No 183
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=84.51 E-value=0.6 Score=42.25 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=20.9
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..+..++.|.| +++-|+||||||...
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 34566788988 888999999999654
No 184
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.18 E-value=1.5 Score=38.78 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=28.5
Q ss_pred cccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHH
Q psy18032 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~ 92 (333)
+|+++--.+...+.+... +.... ...++++.||+|+|||..+.
T Consensus 27 ~~~~iiG~~~~~~~l~~~------------l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVF------------IAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp SGGGCCSCHHHHHHHHHH------------HHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhCChHHHHHHHHHH------------HHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 788887677666655431 11111 22579999999999997544
No 185
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=84.14 E-value=0.72 Score=41.15 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445678888 889999999999754
No 186
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.13 E-value=2 Score=37.24 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.1
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+.++++.||+|+|||...-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999996544
No 187
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=84.05 E-value=0.34 Score=44.46 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred ccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 300 EGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 300 ~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.++.-++.||+|||.+|++|+++...+
T Consensus 35 ~~~~~lv~apTGsGKT~~~l~~~~~~~~~ 63 (414)
T 3oiy_A 35 QGKSFTMVAPTGVGKTTFGMMTALWLARK 63 (414)
T ss_dssp TTCCEECCSCSSSSHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 33455567789999999999999886643
No 188
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.98 E-value=1.9 Score=37.23 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCCCcHHHH-hHHHHHhcCC-----cEEEECCCCcHHHHHHH
Q psy18032 47 EVLKGVLKRGYKIPTPIQR-KTIPLVLEGR-----DVVAMARTGSGKTACFL 92 (333)
Q Consensus 47 ~l~~~l~~~g~~~~~~~Q~-~~i~~i~~g~-----d~l~~a~TGsGKT~~~~ 92 (333)
.+.+.|+-.||. +++. .++...++|+ .+++.||+|+|||..+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 678888888877 4443 3355677664 39999999999997555
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.81 E-value=0.59 Score=37.00 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=15.6
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
..++++.||+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4579999999999996443
No 190
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.75 E-value=0.83 Score=39.04 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.1
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.+.++++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999644
No 191
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=83.55 E-value=0.6 Score=44.32 Aligned_cols=35 Identities=34% Similarity=0.717 Sum_probs=28.2
Q ss_pred ccccccc--ccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 295 IPLVLEG--RDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 295 i~~vi~~--~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
++.+.++ .++.-.+.||+|||.+|++|+++++...
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~ 186 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS 186 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC
Confidence 3444444 6777889999999999999999998764
No 192
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=83.42 E-value=0.71 Score=41.54 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 68 IPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 68 i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+..++.|.| +++-|+||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 444567888 789999999999764
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.39 E-value=0.77 Score=41.24 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=29.4
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhc----CCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE----GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT~~~~ 92 (333)
..+..+|+++--.+...+.+.. ....+.. ++.+++.||+|+|||....
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~------------l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGV------------VLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHH------------HHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred cCcCcchhhccChHHHHHHHHH------------HHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 3445557777656655554332 1122222 3579999999999997544
No 194
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=83.36 E-value=2.9 Score=36.91 Aligned_cols=71 Identities=10% Similarity=0.199 Sum_probs=51.7
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
.+.++||.+++++-+..+++.++. .+..+..++|+.+..++...+ .+ ..+|+|+|. .+..+ +++.+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-id~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRD----IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG-IDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH-CCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh----cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC-CCccc
Confidence 356899999999999999998887 477888999988776654443 22 578999993 33333 45556
Q ss_pred chhhH
Q psy18032 182 IQYTF 186 (333)
Q Consensus 182 l~~lV 186 (333)
+.++|
T Consensus 307 ~~~Vi 311 (367)
T 1hv8_A 307 LNCVI 311 (367)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 66555
No 195
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.19 E-value=3.2 Score=37.17 Aligned_cols=70 Identities=13% Similarity=0.252 Sum_probs=51.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.+++++-+..+++.++. .++.+..++|+.+..++...+. + ..+|||+|. .+. ..+++..+
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gidi~~~ 319 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG-RGMDIERV 319 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCS-SCBCCTTE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhh-cCCCcccC
Confidence 56899999999999999998887 4778889999987666544432 2 589999993 232 23566666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 320 ~~Vi 323 (391)
T 1xti_A 320 NIAF 323 (391)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6665
No 196
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.13 E-value=1.9 Score=39.81 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=18.2
Q ss_pred HHhHHHHHhc--CCcEEEECCCCcHHHH
Q psy18032 64 QRKTIPLVLE--GRDVVAMARTGSGKTA 89 (333)
Q Consensus 64 Q~~~i~~i~~--g~d~l~~a~TGsGKT~ 89 (333)
+..++..++. |.-+++.||||||||.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTT 182 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKST 182 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 4444544443 3458999999999995
No 197
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.06 E-value=0.22 Score=42.97 Aligned_cols=18 Identities=33% Similarity=0.200 Sum_probs=15.2
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
..+++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997554
No 198
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=82.90 E-value=0.86 Score=40.99 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445667888 788999999999754
No 199
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=82.83 E-value=1.4 Score=36.31 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.6
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.|.-+++.||+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4677999999999999543
No 200
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=82.80 E-value=0.87 Score=41.05 Aligned_cols=24 Identities=46% Similarity=0.641 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 68 IPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 68 i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+..++.|.| +++-|+||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345678887 888999999999754
No 201
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=82.75 E-value=0.89 Score=40.64 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=21.7
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..+..++.|.| +++-|+||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 46677889988 888999999999654
No 202
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=82.74 E-value=0.87 Score=41.29 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 68 IPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 68 i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+..++.|.| +++-|+||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 445667887 888999999999754
No 203
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.71 E-value=1.4 Score=41.06 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=32.5
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHH
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~ 92 (333)
...+...|+++.-.++..+.+... +..+. .++++++.||+|+|||..+.
T Consensus 29 ~~~~~~~~~~iiG~~~~~~~l~~~------------~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 29 SGLAKQAASGLVGQENAREACGVI------------VELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TSCBCSEETTEESCHHHHHHHHHH------------HHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred ccChhhchhhccCHHHHHHHHHHH------------HHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 345556788887777776655431 11222 24689999999999996554
No 204
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.67 E-value=0.19 Score=43.18 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=29.5
Q ss_pred CCCcccccCCCHHHHHHHHhC-C-CCCCcHHHHhHHHHH--hcCCcEEEECCCCcHHHHHHH
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKR-G-YKIPTPIQRKTIPLV--LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~-g-~~~~~~~Q~~~i~~i--~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+|+++.-.+...+.+.+. . +..| +.+..+ ...+.+++.||+|+|||...-
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYP-----ERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCH-----HHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCh-----HHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 345788876555555555432 0 1111 111111 124579999999999996544
No 205
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=82.51 E-value=0.85 Score=41.19 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 68 IPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 68 i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+..++.|.| +++-|+||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345677887 888999999999654
No 206
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=82.47 E-value=0.9 Score=41.22 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++.|+||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4455678988 888999999999654
No 207
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=82.38 E-value=0.94 Score=41.69 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=21.8
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++-|+||||||....
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 6777889988 7889999999997653
No 208
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=82.36 E-value=0.83 Score=41.52 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445678888 888999999999654
No 209
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=82.28 E-value=0.9 Score=41.06 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3445667888 889999999999754
No 210
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.28 E-value=0.51 Score=44.08 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=33.3
Q ss_pred cCCCcccccCCCHHHHHHHHhCC---CCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRG---YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|++++-.+...+.|.+.- ...|..++. .....+.+++.||+|+|||..+-
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~----~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG----KRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG----GGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc----cCCCCceEEEECCCCCCHHHHHH
Confidence 44568999887777777776531 011111110 01223679999999999996543
No 211
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.16 E-value=2.2 Score=37.49 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.6
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+++.||+|+|||...-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999996443
No 212
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=82.04 E-value=2.3 Score=39.39 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=43.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh-CCCCEEEECchHHHHHHHhc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEM 175 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~IlI~TP~rll~~l~~~ 175 (333)
+.++||++|+++-+..+++.++.. +.++..++|+... +..+... ...+|||+| +.+..+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~-~~~~~f~~g~~~vLVaT-----~v~e~G 230 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFE-SEYPKCKSEKWDFVITT-----DISEMG 230 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHH-HHTTHHHHSCCSEEEEC-----GGGGTS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHH-HHHHhhcCCCCeEEEEC-----chHHcC
Confidence 458999999999999999998874 7888888887432 2223333 358999999 555554
No 213
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=81.99 E-value=0.9 Score=40.93 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=21.7
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++-|+||||||....
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 6777888988 7889999999997653
No 214
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=81.99 E-value=0.89 Score=41.06 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556778988 788999999999764
No 215
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.90 E-value=2.3 Score=48.98 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=34.7
Q ss_pred CCHHHHHHHHhCCCCCCcHHH-HhHHHH---HhcCCcEEEECCCCcHHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQ-RKTIPL---VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q-~~~i~~---i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
|.+.+.+.+.+.|+. |++.+ .++++. +.....++++||||||||.|+-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 456777888889998 55544 344433 3345679999999999999876
No 216
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=81.85 E-value=1.2 Score=40.20 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.5
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.+.-++++||||||||.
T Consensus 122 ~~g~i~I~GptGSGKTT 138 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKST 138 (356)
T ss_dssp SSEEEEEECSTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 44579999999999995
No 217
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.83 E-value=0.85 Score=40.06 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=15.0
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
|+-+.+.||+|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999996444
No 218
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=81.82 E-value=0.9 Score=40.94 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455678888 888999999999754
No 219
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=81.80 E-value=3.3 Score=37.02 Aligned_cols=70 Identities=10% Similarity=0.180 Sum_probs=52.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+++.++. .+..+..++|+.+..++.+.+ .+ ..+|||+|. .+.. .+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKS----EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLAR-GIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSS-SCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhc-CCCcccC
Confidence 46899999999999999998887 477888999998776654444 23 478999993 3333 3666677
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 313 ~~Vi 316 (395)
T 3pey_A 313 SMVV 316 (395)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6666
No 220
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=81.77 E-value=0.9 Score=41.07 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=20.4
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..+..++.|.| +++-|+||||||...
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34556678988 788899999999654
No 221
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=81.61 E-value=0.95 Score=41.67 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=20.1
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++-|+||||||....
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3445677887 8889999999997643
No 222
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.52 E-value=0.72 Score=41.74 Aligned_cols=19 Identities=47% Similarity=0.545 Sum_probs=17.1
Q ss_pred HhcCCcEEEECCCCcHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~ 89 (333)
+..|+.+.++||||||||.
T Consensus 172 i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH
T ss_pred HhcCCEEEEECCCCCCHHH
Confidence 5678999999999999996
No 223
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=81.39 E-value=7.3 Score=37.61 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=55.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+.++++.++. .++.+..++|+.+..++.+.+. ...+|||+|. .+ ...++..++
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~-~~GID~p~V 336 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQN----LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AF-GMGIDKPDV 336 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TS-CTTCCCSCE
T ss_pred CCCeEEEeCcHHHHHHHHHHHHH----CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hcCCCcccc
Confidence 56899999999999999999987 4788999999988766644432 3589999993 33 234678888
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 337 ~~VI~ 341 (591)
T 2v1x_A 337 RFVIH 341 (591)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88885
No 224
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=81.37 E-value=0.89 Score=41.14 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455678888 888999999999654
No 225
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=81.27 E-value=0.95 Score=41.75 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=21.9
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..+..++.|.| +++.|+||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 46778889998 788999999999754
No 226
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=81.26 E-value=2.2 Score=39.56 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=45.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhh
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYT 185 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~l 185 (333)
+.++||++|+++-+.++++.++.. ++++..++|+... ...+...+ ..+|||+|. .+..+ +++. +.++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~-~~~~~F~~g~~~vLVaT~-----v~e~G-iDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE-REYPTIKQKKPDFILATD-----IAEMG-ANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS-----STTCC-TTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH-HHHhhhcCCCceEEEECC-----hhhee-eccC-ceEE
Confidence 568999999999999999998873 7788888885433 22333443 489999993 44433 4555 6655
Q ss_pred H
Q psy18032 186 F 186 (333)
Q Consensus 186 V 186 (333)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 4
No 227
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=81.26 E-value=0.62 Score=40.72 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.2
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.++++.||+|+|||...-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999996554
No 228
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.23 E-value=0.35 Score=41.84 Aligned_cols=52 Identities=15% Similarity=0.015 Sum_probs=33.3
Q ss_pred CCCcccccCCCHHHHHHHHhCC--CCCCcHHHHhHHHHHh--cCCcEEEECCCCcHHHHHH
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRG--YKIPTPIQRKTIPLVL--EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~--~g~d~l~~a~TGsGKT~~~ 91 (333)
+..+|+++.-.++..+.+++.- |.. ...+..+- -.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 5678999988888877776541 111 11222211 1245999999999999643
No 229
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=81.21 E-value=0.94 Score=40.79 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=21.1
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++-|+||||||....
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 5666778988 8889999999997653
No 230
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=81.21 E-value=1 Score=41.16 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++-|+||||||....
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 3445678887 8889999999997643
No 231
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=81.10 E-value=0.95 Score=41.18 Aligned_cols=25 Identities=44% Similarity=0.609 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445677888 888999999999654
No 232
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=81.08 E-value=2.1 Score=41.95 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=45.9
Q ss_pred CCcHHHHhHHHHHhcCC--cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGR--DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~--d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
.+|.-|++++..+..-. -.++.|+-|.|||.+..+.+-.. .. .++|.+|+.+=+....+..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~~-------~~~vtAP~~~a~~~l~~~~ 237 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-AG-------RAIVTAPAKASTDVLAQFA 237 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-SS-------CEEEECSSCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-Hh-------CcEEECCCHHHHHHHHHHh
Confidence 57999999999988732 37999999999997666655443 21 4699999999777655543
No 233
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=81.05 E-value=0.84 Score=41.46 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=20.8
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++.|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667788988 788899999999754
No 234
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=81.02 E-value=0.72 Score=36.98 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.7
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.|+=+.++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999643
No 235
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=80.98 E-value=1.1 Score=37.02 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=27.3
Q ss_pred CCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 57 YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
+..-+.-|..++..+..|.-+.+.||+|||||...
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34335567778888888999999999999999643
No 236
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=80.90 E-value=1.5 Score=39.06 Aligned_cols=19 Identities=42% Similarity=0.704 Sum_probs=17.0
Q ss_pred HhcCCcEEEECCCCcHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~ 89 (333)
+..|+.+.++||||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4568999999999999996
No 237
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=80.83 E-value=0.96 Score=41.33 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=23.5
Q ss_pred CcHHHHhHHH--------HHhcCCc--EEEECCCCcHHHHHH
Q psy18032 60 PTPIQRKTIP--------LVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 60 ~~~~Q~~~i~--------~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+..-|.+++. .++.|.| +++-|+||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4445666554 4667887 888999999999654
No 238
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=80.62 E-value=0.8 Score=37.31 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=16.8
Q ss_pred hcCCcEEEECCCCcHHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..++.++++|++|||||...-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 356789999999999996544
No 239
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=80.35 E-value=0.67 Score=40.71 Aligned_cols=25 Identities=44% Similarity=0.627 Sum_probs=21.0
Q ss_pred cccEEEEccCCCchhhHHHhhhhhh
Q psy18032 301 GRDVVAMARTGSGKTACFLFYFFFR 325 (333)
Q Consensus 301 ~~~~~~~grtG~g~~~~~~lp~~~~ 325 (333)
+.++.-.+.||+|||.+|++|+++.
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~~ 55 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILEL 55 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 3456677899999999999999875
No 240
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=80.15 E-value=3.8 Score=36.91 Aligned_cols=70 Identities=7% Similarity=0.073 Sum_probs=51.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.+++++-+..+++.++.. ++.+..++|+.+..++...+ .+ ..+|||+|. .+.. .+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTR-GIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSS-SCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc-CCCccCC
Confidence 458999999999999999998874 67888899998776654443 23 478999993 3333 3566666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 328 ~~Vi 331 (400)
T 1s2m_A 328 NVVI 331 (400)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6665
No 241
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=80.06 E-value=1.1 Score=36.89 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=16.1
Q ss_pred cEEEECCCCcHHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLE 97 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~ 97 (333)
-.+++|+.|||||.....-++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999865443333
No 242
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=79.97 E-value=2.9 Score=36.88 Aligned_cols=50 Identities=20% Similarity=-0.006 Sum_probs=30.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
|.=+++.|++|+|||...+--+.+.... +..+++++-- .-..|+..++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~-----g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT-----TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-----CCeEEEEECC-CCHHHHHHHHHH
Confidence 4559999999999996444333333222 3467777644 445555555554
No 243
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=79.88 E-value=0.63 Score=37.16 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.2
Q ss_pred hcCCcEEEECCCCcHHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..++.+++.|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999997544
No 244
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=79.83 E-value=1.2 Score=41.38 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=19.7
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445578888 888999999999654
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=79.70 E-value=4.2 Score=36.61 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=26.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
|.-+++.+|+|+|||.. ++.++..+.. .+..++++.....+
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~----~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQK----MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHH----TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh----cCCeEEEEeccccc
Confidence 45699999999999963 3333333332 25578888765544
No 246
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=79.49 E-value=4.3 Score=38.57 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=54.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---h-CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---H-ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~-~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+..+||.++|+.-+.++++.++. .++.+..++|+.+..++...+ . +..+|||+|. .+ ...+++.++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~-~~GiD~p~v 305 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQS----KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AF-GMGINKPNV 305 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TS-CTTTCCTTC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH----CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hCCCCccCc
Confidence 55799999999999999999987 478899999998876654433 2 2589999994 23 234677888
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 306 ~~VI~ 310 (523)
T 1oyw_A 306 RFVVH 310 (523)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88875
No 247
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=79.43 E-value=1.3 Score=39.04 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.5
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+.++++.|++|+|||..+-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 35689999999999997543
No 248
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.42 E-value=0.68 Score=39.89 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=16.5
Q ss_pred HhcCCcEEEECCCCcHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~ 90 (333)
+..|.-+.++||||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44677799999999999953
No 249
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.33 E-value=7 Score=34.33 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=13.4
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
-+.+.+|+|+|||....
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 37899999999995433
No 250
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=79.32 E-value=1 Score=42.46 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=33.4
Q ss_pred cCCCcccccCCCHHHHHHHHhC--CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKR--GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|+++.-.++..+.+++. .+..|..++.-. +.-.+.+++.||+|+|||...-
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHHH
Confidence 4457899998777776666553 122221111100 0112569999999999997553
No 251
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=79.00 E-value=0.94 Score=36.19 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.8
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
++.++++|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999996544
No 252
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=78.99 E-value=4.5 Score=36.58 Aligned_cols=70 Identities=10% Similarity=0.183 Sum_probs=52.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
..++||.++++.-+..+.+.++. .++.+..++|+.+..++...+. ...+|||+|. .+.. .+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWAR-GLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSS-SCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHh----CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhC-cCCcccC
Confidence 34899999999999999988887 4778889999988766544442 2588999994 3333 3666677
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 346 ~~Vi 349 (410)
T 2j0s_A 346 SLII 349 (410)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6666
No 253
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=78.98 E-value=1.1 Score=40.77 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4566778888 888999999999654
No 254
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=78.78 E-value=2.4 Score=35.25 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=25.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
+=.+++|+-|||||...+--+...... +.+++++-|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~-----g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA-----KQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT-----TCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-----CCEEEEEEeccC
Confidence 335688999999997555444433333 668999998875
No 255
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=78.78 E-value=3.8 Score=41.05 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=55.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHh-------ccCCceEEEEECCcchHHHHHHhhC---------CCCEEEECchHHHH
Q psy18032 107 GVRALILSPTRELALQTFKFVKELG-------KFTKLQSTCLLGGDSMDNQFARLHA---------SPDIVVATPGRFLH 170 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~l~~---------~~~IlI~TP~rll~ 170 (333)
+..+||.+|++.-+..+.+.++... ...++.+..++|+.+..++.+.+.. ...|||+| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 5689999999999999999888632 2357889999999988777655432 36899999 4
Q ss_pred HHHhccccccCchhhHH
Q psy18032 171 IVVEMELKLSSIQYTFK 187 (333)
Q Consensus 171 ~l~~~~~~~~~l~~lV~ 187 (333)
....+ +++.++.++|.
T Consensus 378 iae~G-idIp~v~~VId 393 (773)
T 2xau_A 378 IAETS-LTIDGIVYVVD 393 (773)
T ss_dssp HHHHT-CCCTTEEEEEE
T ss_pred HHHhC-cCcCCeEEEEe
Confidence 44443 56667776663
No 256
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=78.64 E-value=0.95 Score=40.17 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=13.7
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
=+++.||||||||....
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 47889999999996443
No 257
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.59 E-value=5 Score=44.40 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=34.4
Q ss_pred HHHHhc------CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 68 IPLVLE------GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 68 i~~i~~------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
+..++. |+++++.+|+|+|||..+.--+.+... .|.+++++.....+...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-----~G~~v~Fi~~e~~~~~l 1470 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAEHALDPI 1470 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEECTTSCCCHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEcccccCHH
Confidence 555555 689999999999999766544444332 36688888876544333
No 258
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.58 E-value=0.95 Score=40.06 Aligned_cols=16 Identities=44% Similarity=0.517 Sum_probs=13.3
Q ss_pred EEEECCCCcHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL 92 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~ 92 (333)
++++||||||||....
T Consensus 13 i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 13 IFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 7889999999996443
No 259
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=78.39 E-value=0.77 Score=45.21 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=25.9
Q ss_pred ccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 298 VLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 298 vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
++++.++.-++.||+|||++|++|+++.+...
T Consensus 25 ~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~ 56 (696)
T 2ykg_A 25 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKF 56 (696)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred HHcCCCEEEEcCCCchHHHHHHHHHHHHHHhC
Confidence 33455777889999999999999999887543
No 260
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=78.38 E-value=0.88 Score=40.78 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.8
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+-++++||||||||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999996444
No 261
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=78.24 E-value=1.8 Score=35.02 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.4
Q ss_pred CcEEEECCCCcHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACF 91 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~ 91 (333)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999644
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=78.24 E-value=1.1 Score=36.68 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=15.1
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.|+-+.++||+|+|||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46779999999999996443
No 263
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.07 E-value=19 Score=31.22 Aligned_cols=71 Identities=8% Similarity=0.023 Sum_probs=37.9
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCC--c-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR--D-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~--d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
.+|+++--++...+.+.+. +..++ + +++.+|+|+|||..... +...+ +...+.+
T Consensus 23 ~~~~~ivg~~~~~~~l~~~---------------l~~~~~~~~~L~~G~~G~GKT~la~~-la~~l-------~~~~~~i 79 (324)
T 3u61_B 23 STIDECILPAFDKETFKSI---------------TSKGKIPHIILHSPSPGTGKTTVAKA-LCHDV-------NADMMFV 79 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHH---------------HHTTCCCSEEEECSSTTSSHHHHHHH-HHHHT-------TEEEEEE
T ss_pred CCHHHHhCcHHHHHHHHHH---------------HHcCCCCeEEEeeCcCCCCHHHHHHH-HHHHh-------CCCEEEE
Confidence 4677777676666555431 12332 3 56677799999975443 22322 2345555
Q ss_pred cccHHHHHHHHHHHHHH
Q psy18032 114 SPTRELALQTFKFVKEL 130 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~ 130 (333)
.++..-...+.+.+..+
T Consensus 80 ~~~~~~~~~i~~~~~~~ 96 (324)
T 3u61_B 80 NGSDCKIDFVRGPLTNF 96 (324)
T ss_dssp ETTTCCHHHHHTHHHHH
T ss_pred cccccCHHHHHHHHHHH
Confidence 55433344444444443
No 264
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=78.03 E-value=1 Score=35.65 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=15.4
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
++-++++|++|||||...-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999996543
No 265
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=77.79 E-value=0.55 Score=38.42 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=23.1
Q ss_pred ccccEEEEccCCCchhhHHHhhhhhhcc
Q psy18032 300 EGRDVVAMARTGSGKTACFLFYFFFRFD 327 (333)
Q Consensus 300 ~~~~~~~~grtG~g~~~~~~lp~~~~~~ 327 (333)
++.++.-.+.||+|||.++++|+++.+.
T Consensus 47 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 74 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTRVAVYIAKDHLD 74 (216)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3456777899999999999999987654
No 266
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=77.42 E-value=3.1 Score=39.43 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=19.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKL 99 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l 99 (333)
++.++++.|+||||||.+.-.-+++.+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999976544444333
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=77.40 E-value=1.1 Score=35.11 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.7
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
-++++|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997443
No 268
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=76.96 E-value=2.2 Score=34.90 Aligned_cols=20 Identities=30% Similarity=0.202 Sum_probs=15.9
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.|.-+++.||+|+|||....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35669999999999996444
No 269
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=76.95 E-value=11 Score=34.30 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=55.7
Q ss_pred CCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEEC--------CcchHHHHHHh
Q psy18032 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLG--------GDSMDNQFARL 154 (333)
Q Consensus 83 TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~l 154 (333)
..++|.. .+.-++...... ..+.++||.++++.-+..+.+.++.. ++.+..++| +.+..++.+.+
T Consensus 340 ~~~~k~~-~l~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~ 412 (494)
T 1wp9_A 340 LDHPKMD-KLKEIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLIL 412 (494)
T ss_dssp CSCHHHH-HHHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHH
T ss_pred CCChHHH-HHHHHHHHHhcc--CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHH
Confidence 4456653 233334333211 23568999999999999999988873 788888998 65554443333
Q ss_pred ---hC-CCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 155 ---HA-SPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 155 ---~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
.+ .++|||+|. .... .+++..+.++|
T Consensus 413 ~~F~~~~~~vLv~T~-----~~~~-Gldl~~~~~Vi 442 (494)
T 1wp9_A 413 DEFARGEFNVLVATS-----VGEE-GLDVPEVDLVV 442 (494)
T ss_dssp HHHHHTSCSEEEECG-----GGGG-GGGSTTCCEEE
T ss_pred HHHhcCCceEEEECC-----cccc-CCCchhCCEEE
Confidence 22 478999993 3333 35555555555
No 270
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=76.74 E-value=0.97 Score=37.30 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.9
Q ss_pred CCcEEEECCCCcHHHH
Q psy18032 74 GRDVVAMARTGSGKTA 89 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~ 89 (333)
|+-+++.||||+|||.
T Consensus 34 g~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSE 49 (205)
T ss_dssp TEEEEEECCCTTTTHH
T ss_pred CEEEEEECCCCCCHHH
Confidence 4569999999999985
No 271
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=76.69 E-value=1.9 Score=35.39 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.9
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999644
No 272
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=76.68 E-value=1.3 Score=34.77 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.1
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
++.+.+.||+|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999643
No 273
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=76.55 E-value=1.1 Score=36.28 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.3
Q ss_pred hcCCcEEEECCCCcHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~ 91 (333)
..|+-+.+.||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777899999999999643
No 274
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=76.55 E-value=1.1 Score=38.19 Aligned_cols=17 Identities=29% Similarity=0.173 Sum_probs=13.5
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
-++++||+|||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36899999999996443
No 275
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=76.50 E-value=1.3 Score=35.64 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=16.4
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..++++|++|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999996543
No 276
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=76.41 E-value=1.3 Score=36.45 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=15.4
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.|+=+.++||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3566899999999999643
No 277
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.40 E-value=0.99 Score=39.44 Aligned_cols=18 Identities=17% Similarity=0.004 Sum_probs=14.8
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+.+++.||+|+|||...-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999996443
No 278
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.07 E-value=5 Score=36.10 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=15.9
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999996554
No 279
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=75.90 E-value=2.8 Score=34.34 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=26.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
|+=.++.||.|||||.-.+-.+-+.... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-----~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA-----QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-----TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc-----CCeEEEEccc
Confidence 4558899999999995444333333222 5689999888
No 280
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=75.89 E-value=2.9 Score=37.73 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=25.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTR 117 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~ 117 (333)
|+-+++.+++|+|||...+--+.+.... +..++++....
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~-----g~~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAEH 101 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEeCCC
Confidence 4679999999999997554333333222 45688887643
No 281
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=75.78 E-value=1.5 Score=35.83 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=17.1
Q ss_pred HhcCCcEEEECCCCcHHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~ 91 (333)
+..|+-++++||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 446778999999999999643
No 282
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=75.73 E-value=3.2 Score=34.57 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=17.6
Q ss_pred HhcCCcEEEECCCCcHHHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+-.|.-+.+.||+|+|||....
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 3457789999999999996444
No 283
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=75.71 E-value=2.6 Score=37.83 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=25.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTR 117 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~ 117 (333)
|+-+++.||+|+|||...+--+...... +..++++.-..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~-----g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA-----GGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEECCC
Confidence 4669999999999996544333333222 45677777543
No 284
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=75.67 E-value=14 Score=36.18 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=52.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++|+..+..+.+.+.. .++++..++|+.+..++.+.+ .+ ..+|+|+| +.+.. .+++.++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~~-GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLRE-GLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCCT-TCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHh----cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chhhc-CccCCCC
Confidence 56999999999999999998887 477888888887766655443 33 48999999 34433 3566667
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 509 ~lVI~ 513 (664)
T 1c4o_A 509 SLVAI 513 (664)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 76663
No 285
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=75.21 E-value=1.1 Score=36.04 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.3
Q ss_pred HhcCCcEEEECCCCcHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~ 90 (333)
+..|+-+.+.||+|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34567799999999999963
No 286
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.20 E-value=1.5 Score=38.17 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.7
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
.+++.||+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 69999999999996554
No 287
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.01 E-value=4.3 Score=38.47 Aligned_cols=57 Identities=14% Similarity=-0.074 Sum_probs=32.9
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhC----------CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKR----------GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~----------g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+..+ .+|+++--.+...+.+.+. ||..+..- ..-..+.+++.||+|+|||....
T Consensus 29 W~ekyrP-~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~------~~~~~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 29 WTVKYAP-TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKD------GSGVFRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp HHHHTCC-SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTT------STTSCSEEEEECSTTSSHHHHHH
T ss_pred cccccCC-CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCcc------CCCCCcEEEEECCCCCCHHHHHH
Confidence 3334444 3788887777766655432 22221100 00013579999999999997554
No 288
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=74.99 E-value=1 Score=45.23 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=26.6
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.++++.++.-++.||+|||++|++|+++.+..
T Consensus 258 ~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~ 290 (797)
T 4a2q_A 258 QPAINGKNALICAPTGSGKTFVSILICEHHFQN 290 (797)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHh
Confidence 334445567788999999999999999998765
No 289
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.93 E-value=1.4 Score=39.62 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=31.1
Q ss_pred cCCCcccccCCCHHHHHHHHhCC---CCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRG---YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|++++-.+...+.|.+.= ...|...+. .....+.+++.||+|+|||..+-
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG----NRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS----SCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc----CCCCCceEEEECCCCCcHHHHHH
Confidence 34568999876666666665420 011111100 01123579999999999997544
No 290
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.90 E-value=3.2 Score=36.67 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=30.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhh-cccCCceEEEEcccHHH-HHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTH-AATSGVRALILSPTREL-ALQTFKFVKE 129 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~~lil~Pt~~L-~~q~~~~~~~ 129 (333)
|.-+++.||+|+|||....--+.+..... ....+..++++.-...+ ..++.+.++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999964443333322110 00114478888765432 3444444444
No 291
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=74.80 E-value=2.6 Score=36.73 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.6
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
++++.||+|+|||....
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999996543
No 292
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=74.75 E-value=1.1 Score=46.78 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=28.7
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
++.+.++.++.-+|.||+|||.+|.+|+++.+...
T Consensus 193 I~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g 227 (1108)
T 3l9o_A 193 ISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK 227 (1108)
T ss_dssp HHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 44555677888999999999999999999887543
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=74.39 E-value=1.4 Score=34.70 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.3
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
-++++|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999643
No 294
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.30 E-value=14 Score=36.08 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=53.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---h-CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---H-ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~-~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++|+..+..+.+.++. .|+++..++|+.+..++.+.+ . ...+|+|+|- .+.. .+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~-GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKE----IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLRE-GLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCST-TCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHh----cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhC-CcccCCC
Confidence 56999999999999999998887 478888889887766655443 2 2489999993 3333 3566677
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 515 ~lVi~ 519 (661)
T 2d7d_A 515 SLVAI 519 (661)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 76664
No 295
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=74.23 E-value=1.4 Score=39.50 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=15.8
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+++.||+|+|||....
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999996543
No 296
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=74.01 E-value=6 Score=39.83 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.4
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.++.++++||+|+|||..+-
T Consensus 237 ~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 46789999999999996443
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=73.96 E-value=1.6 Score=34.85 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.0
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
+.-+++.|++|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999643
No 298
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=73.92 E-value=1.5 Score=35.63 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=13.5
Q ss_pred CcEEEECCCCcHHHHH
Q psy18032 75 RDVVAMARTGSGKTAC 90 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~ 90 (333)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999963
No 299
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=73.87 E-value=1.3 Score=41.99 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=30.5
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHH--hcCCcEEEECCCCcHHHHHHH
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLV--LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+|++++-.+...+.+.+. +..|.. ..+.+..+ .....+++.||+|+|||..+-
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~-i~~~l~-~~~~~~~~g~~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEM-VELPLR-HPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHH-THHHHH-CHHHHHHHTCCCCCEEEEECSTTSSHHHHHH
T ss_pred CCCHHHcCCHHHHHHHHHHH-HHHHhh-CHHHHHhcCCCCCCcEEEECcCCCCHHHHHH
Confidence 45788876555555555542 110100 01122221 234679999999999997543
No 300
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=73.72 E-value=1.6 Score=35.27 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.7
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.|+=+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5667889999999999643
No 301
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=73.62 E-value=4.8 Score=39.63 Aligned_cols=68 Identities=9% Similarity=0.110 Sum_probs=47.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhh
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYT 185 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~l 185 (333)
+.++||++|+++-+.++++.++. .++++..++|+. .....+...+ ..+|||+| +.+..+ +++. +.++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~----~g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaT-----dv~e~G-IDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQR----AGKRVIQLNRKS-YDTEYPKCKNGDWDFVITT-----DISEMG-ANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECSSS-HHHHGGGGGTCCCSEEEEC-----GGGGTT-CCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCeEEEeChHH-HHHHHHHHHCCCceEEEEC-----chhhcc-eeeC-CcEE
Confidence 56899999999999998888876 378888888853 2222333333 48999999 455444 4455 5554
Q ss_pred H
Q psy18032 186 F 186 (333)
Q Consensus 186 V 186 (333)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 4
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=73.42 E-value=1.7 Score=35.34 Aligned_cols=20 Identities=45% Similarity=0.519 Sum_probs=16.2
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.|+-+.+.||+|||||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46779999999999996433
No 303
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.29 E-value=1.5 Score=39.42 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.9
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997544
No 304
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=73.20 E-value=5.2 Score=37.14 Aligned_cols=68 Identities=10% Similarity=0.070 Sum_probs=47.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhh
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYT 185 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~l 185 (333)
+.++||.+|++.-+.++++.++. .++.+..++|+... ...+...+ ..+|||+| +.+..+ +++.. .++
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~----~g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~~G-iDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISEMG-ANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGGSS-CCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHH----cCCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHHhC-cCCCC-CEE
Confidence 45899999999999999988876 47788888876653 22334443 48999999 455444 45555 444
Q ss_pred H
Q psy18032 186 F 186 (333)
Q Consensus 186 V 186 (333)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 4
No 305
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=73.18 E-value=1.8 Score=35.83 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=16.1
Q ss_pred HhcCCcEEEECCCCcHHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~ 91 (333)
+..|+=+.++||+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345778999999999999633
No 306
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=73.14 E-value=1.6 Score=34.20 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=13.8
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
-+++.|+.|||||...-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996443
No 307
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.11 E-value=1.3 Score=44.51 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=35.7
Q ss_pred cCCCcccccCCCHHHHHHHHhC-CC--CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKR-GY--KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~-g~--~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+..+|++++.-++..+.|++. -| ..|..++..- +...+.+|+.||+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 3456899999889998888775 22 2222221110 112357999999999999644
No 308
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=73.05 E-value=1.7 Score=35.74 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=16.3
Q ss_pred hcCCcEEEECCCCcHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~ 91 (333)
..|+=++++||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 35677999999999999633
No 309
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=73.00 E-value=1.3 Score=40.20 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=16.2
Q ss_pred HhcCCcEEEECCCCcHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~ 90 (333)
+..|..++++||||||||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34567799999999999953
No 310
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=72.94 E-value=1.4 Score=34.76 Aligned_cols=19 Identities=37% Similarity=0.333 Sum_probs=15.4
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
|+-+.++|+.|||||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5568999999999996443
No 311
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=72.91 E-value=3.8 Score=34.37 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=16.3
Q ss_pred cEEEECCCCcHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPML 96 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l 96 (333)
++++.++.|+|||...+--+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 599999999999976553333
No 312
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.81 E-value=2.3 Score=37.67 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.9
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.++++.||+|+|||...-
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999996443
No 313
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.81 E-value=5.1 Score=35.43 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=29.3
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+|+++--++.+.+.+++.=+.. -...++++.||+|+|||...-
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHHH
Confidence 35777777777777776642111 122349999999999996543
No 314
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=72.57 E-value=2.5 Score=38.21 Aligned_cols=20 Identities=45% Similarity=0.554 Sum_probs=16.3
Q ss_pred cCCc--EEEECCCCcHHHHHHH
Q psy18032 73 EGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.|.| +++-|+||||||....
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4777 6999999999996543
No 315
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=72.55 E-value=1.6 Score=39.74 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.1
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
.+++++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999997544
No 316
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=72.51 E-value=4.6 Score=35.53 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=31.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhh-------cccCC----ceEEEEcccHHH-HHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTH-------AATSG----VRALILSPTREL-ALQTFKFVKEL 130 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~-------~~~~~----~~~lil~Pt~~L-~~q~~~~~~~~ 130 (333)
.-+++.|++|+|||...+--+.+..... .-..+ ..++++.-...+ ..++.+.++.+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 4699999999999965443333322110 00112 578888765443 45555555554
No 317
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=72.47 E-value=5.7 Score=36.81 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=27.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
+..+++.||+|+|||.... .+.+.+... ..+..++++.. ..+..+....+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~~--~~~~~v~~v~~-~~~~~~~~~~~ 179 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQN--EPDLRVMYITS-EKFLNDLVDSM 179 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHHH--CCSSCEEEEEH-HHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHh--CCCCeEEEeeH-HHHHHHHHHHH
Confidence 3579999999999996443 233333321 11334555443 34455544433
No 318
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.46 E-value=1.7 Score=38.65 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.1
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
-++++||||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999996443
No 319
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=72.36 E-value=1.5 Score=44.95 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=26.1
Q ss_pred ccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 298 VLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 298 vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
++++.++.-.+.||+|||++|++|+++.+...
T Consensus 260 il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~ 291 (936)
T 4a2w_A 260 AINGKNALICAPTGSGKTFVSILICEHHFQNM 291 (936)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC
T ss_pred HHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc
Confidence 34455677788999999999999999988763
No 320
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=72.13 E-value=3.6 Score=37.20 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
|.-+++.+++|+|||...+ .++..+.. .+..++++..-..
T Consensus 74 G~li~I~G~pGsGKTtlal-~la~~~~~----~g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLAL-AIVAQAQK----AGGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHHH-HHHHHHHH----TTCCEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHHH-HHHHHHHH----CCCeEEEEECCCC
Confidence 4569999999999996443 33333332 2446777775543
No 321
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=72.09 E-value=1.3 Score=35.30 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=15.9
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.|..+++.|+.|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678999999999996443
No 322
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=72.05 E-value=2.4 Score=37.67 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=24.4
Q ss_pred CcHHHHhHHHHHh----cCC---cEEEECCCCcHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVL----EGR---DVVAMARTGSGKTACFLI 93 (333)
Q Consensus 60 ~~~~Q~~~i~~i~----~g~---d~l~~a~TGsGKT~~~~l 93 (333)
..|+|.+++..+. +|+ .+++.||.|+|||.....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 3577777766654 343 389999999999965553
No 323
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=72.04 E-value=1.5 Score=45.88 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=28.5
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.++.++++.++.-++.||+|||.+|++|+++.+..
T Consensus 86 ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~ 120 (1104)
T 4ddu_A 86 WAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK 120 (1104)
T ss_dssp HHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc
Confidence 45666667788899999999999999998887644
No 324
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=72.04 E-value=1.6 Score=34.64 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.|+=+.++||+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45568899999999997554
No 325
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=71.86 E-value=2.2 Score=36.40 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=18.1
Q ss_pred HhcCCcEEEECCCCcHHHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+.|+.+.+.|++|||||...-
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHH
Confidence 3458999999999999996544
No 326
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=71.84 E-value=1.9 Score=35.26 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=16.5
Q ss_pred HHhcCCcEEEECCCCcHHHHHH
Q psy18032 70 LVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 70 ~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+..|+=+.+.||+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5677888999999999999643
No 327
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=71.35 E-value=3.3 Score=43.52 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=30.1
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
-+|.|..|||||.+.+--+...+... ..+.+.|+|||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~--~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA--PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC--TTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC--CCCCcEEEEecCcc
Confidence 37899999999987776666666552 23468999999874
No 328
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=71.29 E-value=3.4 Score=38.41 Aligned_cols=49 Identities=20% Similarity=0.007 Sum_probs=28.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
|.=+++.|++|+|||...+--+.+.... +..+++++-- .-..|+..++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~-----g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT-----TCEEEEECSS-SCTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc-----CCEEEEEECC-CCHHHHHHHHH
Confidence 4459999999999996444333333222 4467776543 33444444443
No 329
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=71.23 E-value=5.4 Score=34.48 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=28.8
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+|+++--++...+.+.+. +.. -...++++.||+|+|||....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHHH
Confidence 4677777677777777653 111 012359999999999996443
No 330
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=71.20 E-value=1.3 Score=38.79 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.9
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
...+++.||+|+|||....
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3689999999999996544
No 331
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=71.15 E-value=1.9 Score=38.67 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=13.9
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
-++++||||||||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999996443
No 332
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=70.86 E-value=5.2 Score=38.42 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=19.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
-++++.|.||||||.+.-.-+++.+..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 479999999999997665555554433
No 333
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=70.80 E-value=9.2 Score=30.91 Aligned_cols=63 Identities=10% Similarity=0.139 Sum_probs=47.7
Q ss_pred CcHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
..+.|..++..++...+ .+++++-|++|+...+-.++..... .|.++.+|+|+..-.....+.
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~----~Gr~V~vLAp~~~s~~~l~~~ 99 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE----QGREVQIIAADRRSQMNMKQD 99 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH----TTCCEEEECSTTHHHHHHSCT
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh----cCeEEEEEcCchHHHHHHHhh
Confidence 34689999999877654 8889999999998765555554443 478999999999876655443
No 334
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=70.47 E-value=2.3 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=13.5
Q ss_pred CcEEEECCCCcHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACF 91 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~ 91 (333)
+=+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34678999999999643
No 335
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=70.37 E-value=4.5 Score=33.52 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=18.1
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPML 96 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l 96 (333)
.|.-+.+.||+|+|||.....-+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456799999999999965544333
No 336
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.33 E-value=3.2 Score=37.21 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=16.3
Q ss_pred ccccc-CCCHHHHHHHHhCCCCC
Q psy18032 38 GFQSF-GLGFEVLKGVLKRGYKI 59 (333)
Q Consensus 38 ~f~~~-~l~~~l~~~l~~~g~~~ 59 (333)
..+++ |+.+...+.|++.||.+
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t 58 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDT 58 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCS
T ss_pred cHHHcCCCCHHHHHHHHHcCCCc
Confidence 34554 58888888888888874
No 337
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=69.79 E-value=3 Score=41.39 Aligned_cols=26 Identities=42% Similarity=0.602 Sum_probs=21.8
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..+..++.|.| +++-|+||||||...
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 36788899998 788899999999654
No 338
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=69.41 E-value=2.4 Score=35.36 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=16.6
Q ss_pred HhcCCcEEEECCCCcHHHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+-.|+=+.++||+|+|||...-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 4567789999999999996433
No 339
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=69.32 E-value=5 Score=32.82 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=28.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
-.+++..++|.|||.+++--++..+.. |.+++|+-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~-----G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH-----GKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEE
Confidence 379999999999998888777766665 77888883
No 340
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.24 E-value=3 Score=37.19 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.9
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+++.||+|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999996543
No 341
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=69.18 E-value=4.6 Score=34.00 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=27.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
|+=.+..|+-|||||...+--+...... +.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~-----g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA-----QYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT-----TCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-----CCeEEEEeecCC
Confidence 5557888999999997555444433332 678999988764
No 342
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=69.07 E-value=2 Score=39.48 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.1
Q ss_pred EEEECCCCcHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL 92 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~ 92 (333)
+++.||||||||....
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6789999999996443
No 343
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=69.05 E-value=4.2 Score=35.20 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=16.4
Q ss_pred hcCCcEEEECCCCcHHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..|.=+++.||+|+|||....
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHH
Confidence 346679999999999996443
No 344
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=69.02 E-value=2.9 Score=37.45 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.7
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
.+++.||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999997543
No 345
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=68.60 E-value=2.4 Score=32.87 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=12.4
Q ss_pred EEEECCCCcHHHHH
Q psy18032 77 VVAMARTGSGKTAC 90 (333)
Q Consensus 77 ~l~~a~TGsGKT~~ 90 (333)
.++.||+|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999964
No 346
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=68.55 E-value=1.2 Score=46.30 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=24.8
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.++++.++.-+|.||+|||. |.+|++.++..
T Consensus 66 ~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~ 97 (1054)
T 1gku_B 66 KRILRKESFAATAPTGVGKTS-FGLAMSLFLAL 97 (1054)
T ss_dssp HHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT
T ss_pred HHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh
Confidence 444455677778999999998 99999987643
No 347
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=68.32 E-value=4.6 Score=36.07 Aligned_cols=49 Identities=22% Similarity=0.108 Sum_probs=29.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
|.=+++.|++|+|||...+ -+...+.. .+..++|++.- .-..|+..++.
T Consensus 46 G~LiiIaG~pG~GKTt~al-~ia~~~a~----~g~~Vl~fSlE-ms~~ql~~Rll 94 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMM-NMVLSALN----DDRGVAVFSLE-MSAEQLALRAL 94 (338)
T ss_dssp TCEEEEEECTTSCHHHHHH-HHHHHHHH----TTCEEEEEESS-SCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHH-HHHHHHHH----cCCeEEEEeCC-CCHHHHHHHHH
Confidence 4459999999999996444 33333332 24567777653 33455555443
No 348
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.16 E-value=4.4 Score=36.17 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=30.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcccHHH-HHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTREL-ALQTFKFVKE 129 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~Pt~~L-~~q~~~~~~~ 129 (333)
.-+++.||+|+|||....--+.+...... ...+..++++.-...+ ..++.+.++.
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999654433333222100 0124578888765432 2334443443
No 349
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=68.01 E-value=2.3 Score=34.44 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=14.9
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+-++++|+.|||||...-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999996443
No 350
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.87 E-value=2.9 Score=39.16 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=15.9
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
..++++.||+|+|||...-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3579999999999997554
No 351
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=67.78 E-value=2.2 Score=34.64 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=16.0
Q ss_pred hcCCcEEEECCCCcHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~ 91 (333)
..|.-+.+.||+|||||...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34667999999999999644
No 352
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=67.70 E-value=8.6 Score=40.46 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=42.3
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhc-------ccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHA-------ATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~-------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
..+|.|.-|||||.+-.--++..+.... .-.-.+.|+|+=|++=|.++.++++..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999888777777775321 112347999999999999998888863
No 353
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=67.68 E-value=2.7 Score=33.12 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=14.6
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+.+++.+++|||||...-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368999999999996443
No 354
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=67.64 E-value=2.5 Score=35.29 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.6
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.+..+++.|++|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567999999999999643
No 355
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=67.63 E-value=1.3 Score=39.27 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=15.7
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
..++++.||+|+|||...-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999996544
No 356
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.58 E-value=6.3 Score=34.83 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=14.2
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
++++.||+|+|||....
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38999999999996544
No 357
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=67.45 E-value=2.6 Score=32.95 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.3
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+++++.|+.|||||...-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999997544
No 358
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=67.44 E-value=6.5 Score=31.24 Aligned_cols=13 Identities=31% Similarity=0.261 Sum_probs=11.6
Q ss_pred EEEECCCCcHHHH
Q psy18032 77 VVAMARTGSGKTA 89 (333)
Q Consensus 77 ~l~~a~TGsGKT~ 89 (333)
+.+.|++|||||.
T Consensus 7 i~i~G~sGsGKTT 19 (169)
T 1xjc_A 7 WQVVGYKHSGKTT 19 (169)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6789999999995
No 359
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=67.29 E-value=2.8 Score=34.30 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=21.8
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
++.+... ..+..|.-+++.|+.|||||...-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 4454444 345567789999999999996443
No 360
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=67.28 E-value=5 Score=37.33 Aligned_cols=49 Identities=24% Similarity=0.221 Sum_probs=28.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
|.=+++.|++|+|||...+- +...+... .+..+++++.... ..|+...+
T Consensus 203 G~liiI~G~pG~GKTtl~l~-ia~~~~~~---~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALN-IAQNVATK---TNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHH-HHHHHHHH---SSCCEEEEESSSC-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH-HHHHHHHh---CCCcEEEEECCCC-HHHHHHHH
Confidence 45699999999999964443 33333221 2446777764332 23444443
No 361
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=67.21 E-value=8 Score=37.91 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=49.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
+.++||.+++++-+.++++.+++ .++.+..++|+.+..+. ..++.+|||+| +.+..+ ++++ ++++|
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCCC-CcEEE
Confidence 56899999999999999988886 47889999999876652 23456999999 455444 3443 66655
No 362
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=67.14 E-value=10 Score=41.30 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=35.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
+-+.+.+|.|||||...+-.+.+. .. .|..|+++.+-.+|.... ++.++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~-~~----~g~~~~~i~~e~~~~~~~---~~~~G 1480 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAA-QR----EGKTCAFIDAEHALDPIY---ARKLG 1480 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH-HH----TTCCEEEECTTSCCCHHH---HHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH-Hh----cCCeEEEEecCCCCCHHH---HHHcC
Confidence 569999999999997655444333 22 377899999988876654 55543
No 363
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=66.65 E-value=5.6 Score=33.12 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=26.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
|.=.++++|-|+|||...+-- +.+... .+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~----~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIY----AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH----TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHH----cCCceEEEEeccC
Confidence 445788999999999644433 344333 2567999999764
No 364
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=66.56 E-value=4.1 Score=39.44 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=20.3
Q ss_pred HHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+-..+..|..+++.||+|+|||..+-
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHH
Confidence 33446678899999999999996443
No 365
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=66.47 E-value=11 Score=37.71 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.4
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+.+|+.||+|+|||+.+-
T Consensus 239 ~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999997543
No 366
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=66.46 E-value=2.7 Score=33.64 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=14.0
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+-+.++||+|+|||...-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 346889999999996443
No 367
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=66.40 E-value=2.6 Score=40.85 Aligned_cols=15 Identities=13% Similarity=0.434 Sum_probs=13.8
Q ss_pred cEEEECCCCcHHHHH
Q psy18032 76 DVVAMARTGSGKTAC 90 (333)
Q Consensus 76 d~l~~a~TGsGKT~~ 90 (333)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999963
No 368
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=66.36 E-value=2.4 Score=33.80 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=15.1
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+.-+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999997543
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=66.36 E-value=2.8 Score=33.55 Aligned_cols=20 Identities=20% Similarity=0.234 Sum_probs=16.3
Q ss_pred hcCCcEEEECCCCcHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~ 91 (333)
..+.-+++.|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35667999999999999644
No 370
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=66.31 E-value=4.8 Score=37.32 Aligned_cols=49 Identities=29% Similarity=0.117 Sum_probs=27.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
|.=+++.|++|+|||...+--+.+.... .+..+++++.-. -..|+..++
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~----~g~~vl~~slE~-~~~~l~~R~ 248 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK----EGVGVGIYSLEM-PAAQLTLRM 248 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT----TCCCEEEEESSS-CHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEECCC-CHHHHHHHH
Confidence 3458999999999996444333333222 144577766532 234444443
No 371
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=66.25 E-value=2.8 Score=37.23 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.1
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
..+++.||+|+|||...-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999996544
No 372
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=66.17 E-value=8.9 Score=40.26 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=54.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.+++|++|+++-+..+++.++... .+.++..++|+.+..++.+.+. +..+|||+|. .+.. .+++.++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e~-GiDip~v 883 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIET-GIDIPTA 883 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGG-GSCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----ccee-eecccCC
Confidence 6789999999999999999998853 4778899999987766544432 2589999994 3333 4667777
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 884 ~~VI 887 (1151)
T 2eyq_A 884 NTII 887 (1151)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 7666
No 373
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=66.02 E-value=2.2 Score=37.12 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.1
Q ss_pred CcEEEECCCCcHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACF 91 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~ 91 (333)
.-++++||+|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34899999999999644
No 374
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=65.83 E-value=6.3 Score=36.64 Aligned_cols=54 Identities=7% Similarity=0.071 Sum_probs=40.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC-CCCEEEECc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATP 165 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP 165 (333)
+.++||.+|++.-+..+++.++. .++.+..++|..... ..+...+ ..+|||+|.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~----~g~~v~~lh~~~R~~-~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQR----AGKKVIQLNRKSYDT-EYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----TTCCEEEESTTCCCC-CGGGSSSCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHh----cCCcEEecCHHHHHH-HHhhccCCCceEEEECC
Confidence 45899999999999999999887 377888888754322 2233333 489999993
No 375
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.47 E-value=2.7 Score=37.70 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=14.7
Q ss_pred CcEEEECCCCcHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACF 91 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~ 91 (333)
..+++.||+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56999999999999654
No 376
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=65.45 E-value=2.3 Score=33.90 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=14.7
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
+.-++++|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446899999999999644
No 377
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=65.31 E-value=2.7 Score=37.92 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.4
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
-.+++||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999654
No 378
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=65.16 E-value=3.4 Score=32.76 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=14.5
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.-++++|++|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999996543
No 379
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=65.12 E-value=2.7 Score=39.15 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.2
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.++++.||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999997554
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=65.12 E-value=3.3 Score=33.20 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=16.0
Q ss_pred hcCCcEEEECCCCcHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~ 91 (333)
..+.-+++.|++|||||...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999643
No 381
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=64.93 E-value=23 Score=33.43 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=41.7
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchH----H
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMD----N 149 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~ 149 (333)
.+++++++|+|||....--+ ..+.. .|.+++++.. .+..+.++.+.. ....++.+.....+.+.. +
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~----~G~kVllVd~D~~r~aa~~qL~~~---~~~~~i~v~~~~~~~dp~~i~~~ 174 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQR----KGWKTCLICADTFRAGAFDQLKQN---ATKARIPFYGSYTEMDPVIIASE 174 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH----TTCCEEEEEECCSSSHHHHHHHHH---HHHHTCCEEECCCCSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHh----CCCeEEEEeccccchhHHHHHHHH---hhccCceEEccCCCCCHHHHHHH
Confidence 48889999999996443222 22222 2456666664 234443332222 222355544332222221 1
Q ss_pred HHHHhh-CCCC-EEEECchHH
Q psy18032 150 QFARLH-ASPD-IVVATPGRF 168 (333)
Q Consensus 150 ~~~~l~-~~~~-IlI~TP~rl 168 (333)
....+. ++++ +||=||+++
T Consensus 175 al~~~~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 175 GVEKFKNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHHHHHHTTCCEEEEEECCCC
T ss_pred HHHHHHHCCCcEEEEeCCCCc
Confidence 122222 4444 678899876
No 382
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=64.91 E-value=2.7 Score=33.29 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.1
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
=.+++||+|||||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4689999999999643
No 383
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=64.90 E-value=2.9 Score=34.17 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=13.8
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
.+++.||+|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999996443
No 384
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.72 E-value=3.1 Score=38.67 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.8
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
.+++++.||+|+|||...-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4689999999999996543
No 385
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=64.61 E-value=5.5 Score=35.34 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=28.0
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
-+++.+|+|+|||...+-.+.+.... ..+..++++..-..+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~---g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ---YPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH---CTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc---CCCceEEEEeccchhhH
Confidence 48999999999996544433333221 12457899887766643
No 386
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=64.49 E-value=3.2 Score=32.45 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=14.5
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+-+++.|+.|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999996443
No 387
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=64.16 E-value=44 Score=28.25 Aligned_cols=81 Identities=10% Similarity=0.120 Sum_probs=55.3
Q ss_pred hcCCcEEEECC-CCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 72 LEGRDVVAMAR-TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 72 ~~g~d~l~~a~-TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
|+||-++|.+. .|-|+..+-.+. . .|.++++..-..+-+.+..+.++. .+.++..+..+.+..+.
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la------~----~Ga~Vv~~~~~~~~~~~~~~~i~~----~g~~~~~~~~Dvt~~~~ 70 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFA------L----NDSIVVAVELLEDRLNQIVQELRG----MGKEVLGVKADVSKKKD 70 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHH------H----TTCEEEEEESCHHHHHHHHHHHHH----TTCCEEEEECCTTSHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH------H----cCCEEEEEECCHHHHHHHHHHHHh----cCCcEEEEEccCCCHHH
Confidence 67888899876 566776544332 2 377888888888888888888876 35567777777665555
Q ss_pred HHHhh-------CCCCEEEECch
Q psy18032 151 FARLH-------ASPDIVVATPG 166 (333)
Q Consensus 151 ~~~l~-------~~~~IlI~TP~ 166 (333)
.+.+. .+.||||-.-+
T Consensus 71 v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 71 VEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCc
Confidence 44432 36899997654
No 388
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=63.90 E-value=3.3 Score=33.17 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=12.6
Q ss_pred cEEEECCCCcHHHHH
Q psy18032 76 DVVAMARTGSGKTAC 90 (333)
Q Consensus 76 d~l~~a~TGsGKT~~ 90 (333)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999964
No 389
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=63.57 E-value=8.4 Score=34.17 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.1
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
.+++.||+|+|||....
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999996543
No 390
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=63.54 E-value=21 Score=32.96 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=42.1
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHH----
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN---- 149 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---- 149 (333)
-+++++++|+|||....--+. .+.. ..|.+++++. |.+..+.++.... ....++.+.....+.+..+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~-~l~~---~~G~kVllvd~D~~r~~a~~ql~~~---~~~~~l~v~~~~~~~dp~~i~~~ 174 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGK-FLRE---KHKKKVLVVSADVYRPAAIKQLETL---AEQVGVDFFPSDVGQKPVDIVNA 174 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHH---TSCCCEEEEECCCSSTTHHHHHHHH---HHHHTCEECCCCSSSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH---hcCCeEEEEecCCCCccHHHHHHhh---cccCCeeEEeCCCCCCHHHHHHH
Confidence 477889999999964442222 2222 1144666655 4444444443322 2234554433222222222
Q ss_pred HHHHhh-CCCC-EEEECchHH
Q psy18032 150 QFARLH-ASPD-IVVATPGRF 168 (333)
Q Consensus 150 ~~~~l~-~~~~-IlI~TP~rl 168 (333)
....+. .+++ |||=||+++
T Consensus 175 ~l~~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 175 ALKEAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHHHHTTCSEEEEECCCCC
T ss_pred HHHHHHhCCCCEEEEECCCcc
Confidence 123333 3554 567898864
No 391
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=63.54 E-value=3.3 Score=34.10 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=14.4
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.-+.+.||+|||||...-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999996443
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=63.50 E-value=3.2 Score=33.95 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=13.8
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
.+++.||.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997443
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=63.43 E-value=3.1 Score=32.93 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.3
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.|.-+.+.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566889999999999643
No 394
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=63.38 E-value=7.7 Score=33.17 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=18.9
Q ss_pred HHhcCCcEEEECCCCcHHHHHHHH
Q psy18032 70 LVLEGRDVVAMARTGSGKTACFLI 93 (333)
Q Consensus 70 ~i~~g~d~l~~a~TGsGKT~~~~l 93 (333)
-+..|.-+++.||+|+|||.....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHH
Confidence 355778899999999999965443
No 395
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=62.94 E-value=3.8 Score=32.98 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=15.8
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667999999999999644
No 396
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=62.92 E-value=3.3 Score=39.63 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.6
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.|..+++.||+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36789999999999996544
No 397
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=62.76 E-value=23 Score=32.98 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=44.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEEC--------CcchHHHHHHh---hC--CCCEEEECchHHHHHHH
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLG--------GDSMDNQFARL---HA--SPDIVVATPGRFLHIVV 173 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~l---~~--~~~IlI~TP~rll~~l~ 173 (333)
+.++||.++++.-+..+.+.++..+...++++..++| +.+..++.+.+ .+ ..+|||+|. ...
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~ 463 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VAD 463 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CTT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hhh
Confidence 4689999999999999999999865444455555554 44444443332 33 478999993 333
Q ss_pred hccccccCchhhH
Q psy18032 174 EMELKLSSIQYTF 186 (333)
Q Consensus 174 ~~~~~~~~l~~lV 186 (333)
. .+++.++.++|
T Consensus 464 ~-GlDlp~v~~VI 475 (555)
T 3tbk_A 464 E-GIDIAECNLVI 475 (555)
T ss_dssp C-CEETTSCSEEE
T ss_pred c-CCccccCCEEE
Confidence 3 36677777766
No 398
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=62.73 E-value=2.9 Score=34.74 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=12.0
Q ss_pred hcCCcEEEECCCCcHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~ 91 (333)
..|+=+.+.||+|||||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999543
No 399
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=62.60 E-value=3.9 Score=33.02 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=14.7
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
+.-+++.|+.|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999643
No 400
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=62.32 E-value=3.9 Score=33.59 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.0
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
+..+++.|+.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999643
No 401
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=62.28 E-value=3.2 Score=32.95 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=13.2
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999643
No 402
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=62.25 E-value=3.4 Score=34.20 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=15.1
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.+.-+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3467999999999999643
No 403
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=62.19 E-value=4.4 Score=40.38 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=16.0
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
..++++.||+|+|||...-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997554
No 404
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=62.11 E-value=2.7 Score=34.34 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.7
Q ss_pred CCcEEEECCCCcHHHH
Q psy18032 74 GRDVVAMARTGSGKTA 89 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~ 89 (333)
|.-+.+.||+|||||.
T Consensus 22 g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 22 RQLVALSGAPGSGKST 37 (208)
T ss_dssp CEEEEEECCTTSCTHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4568899999999995
No 405
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=61.66 E-value=3.5 Score=32.87 Aligned_cols=20 Identities=35% Similarity=0.283 Sum_probs=15.8
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.|.-+++.|+.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35568999999999996443
No 406
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=61.58 E-value=3.3 Score=32.85 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=13.6
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
-+++.|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999744
No 407
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=61.56 E-value=3.4 Score=47.06 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.8
Q ss_pred HhcCCcEEEECCCCcHHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~ 91 (333)
+..++.++++||||+|||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 445789999999999999754
No 408
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=61.53 E-value=3.1 Score=41.72 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=23.5
Q ss_pred ccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 302 RDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 302 ~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.++.-.|.||+|||.+|++|+++.++.
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~~ 416 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYEA 416 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 367788999999999999999988754
No 409
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=61.38 E-value=4.5 Score=39.69 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=50.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHH--hccCCceEEEEECC--------cchHHHHHHhh---C-CCCEEEECchHHHHHH
Q psy18032 107 GVRALILSPTRELALQTFKFVKEL--GKFTKLQSTCLLGG--------DSMDNQFARLH---A-SPDIVVATPGRFLHIV 172 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~--~~~~~~~~~~~~g~--------~~~~~~~~~l~---~-~~~IlI~TP~rll~~l 172 (333)
+.++||.++++..+..+.+.++.. ....|+++..++|+ .+..++.+.+. + ..+|||+|. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 568999999999999999998863 22237888889988 66666554443 2 478999993 33
Q ss_pred HhccccccCchhhH
Q psy18032 173 VEMELKLSSIQYTF 186 (333)
Q Consensus 173 ~~~~~~~~~l~~lV 186 (333)
.. .+++.++.++|
T Consensus 475 ~~-GIDip~v~~VI 487 (699)
T 4gl2_A 475 EE-GLDIKECNIVI 487 (699)
T ss_dssp CT-TSCCCSCCCCE
T ss_pred cc-CCccccCCEEE
Confidence 33 36777888777
No 410
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=61.06 E-value=1.8 Score=35.28 Aligned_cols=21 Identities=24% Similarity=-0.029 Sum_probs=16.1
Q ss_pred HhcCCcEEEECCCCcHHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~ 91 (333)
+..+.-+.+.|++|||||...
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 344556889999999999643
No 411
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=61.01 E-value=3.3 Score=33.51 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.3
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556899999999999643
No 412
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=60.95 E-value=8.7 Score=33.91 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=13.4
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
-+.+.+++|+|||....
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37888999999995443
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=60.91 E-value=5.2 Score=35.24 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=12.3
Q ss_pred EEEECCCCcHHHHH
Q psy18032 77 VVAMARTGSGKTAC 90 (333)
Q Consensus 77 ~l~~a~TGsGKT~~ 90 (333)
+++.|+.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 68899999999963
No 414
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=60.82 E-value=4.2 Score=34.18 Aligned_cols=17 Identities=47% Similarity=0.663 Sum_probs=14.8
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+-+.+.||+|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46678999999999995
No 415
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=60.57 E-value=6.5 Score=37.03 Aligned_cols=51 Identities=12% Similarity=0.011 Sum_probs=29.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
.|.=+++.|++|+|||...+--+.+.... .+..+++++-- .-..|+..++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~----~g~~vl~~s~E-~s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA----MGKKVGLAMLE-ESVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT----SCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh----cCCcEEEEecc-CCHHHHHHHHH
Confidence 34569999999999996444333333221 14457776543 33445555543
No 416
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=60.57 E-value=3.2 Score=33.75 Aligned_cols=18 Identities=28% Similarity=0.084 Sum_probs=14.1
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
|.-+.+.||+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445789999999999643
No 417
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=60.53 E-value=9.4 Score=33.44 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=13.9
Q ss_pred CCcEEEECCCCcHHHHH
Q psy18032 74 GRDVVAMARTGSGKTAC 90 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~ 90 (333)
|+-+.+.||+|+|||..
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 45588999999999953
No 418
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=60.44 E-value=4.2 Score=33.47 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=15.4
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999996443
No 419
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=60.41 E-value=4.1 Score=31.61 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.3
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999644
No 420
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=60.39 E-value=4 Score=32.95 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=13.6
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
-+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999644
No 421
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=60.26 E-value=3.7 Score=33.20 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=13.3
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
-+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999643
No 422
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=59.68 E-value=4.1 Score=32.99 Aligned_cols=16 Identities=38% Similarity=0.246 Sum_probs=13.0
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
-+.+.||.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999643
No 423
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=59.55 E-value=4.2 Score=34.62 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=14.9
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+.-++++|++|||||...-
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 3458999999999996443
No 424
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=59.52 E-value=8.1 Score=42.79 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=32.3
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
-.|+++++.+|+|+|||....--+.+.+.. |.+++++. ..++..+++
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~-----Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEEC-TTSCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEE-ccccHHHHH
Confidence 356899999999999997666555555443 56777775 444444544
No 425
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=59.47 E-value=4.2 Score=35.76 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=15.7
Q ss_pred hcCCcEEEECCCCcHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~ 90 (333)
-.|+-+.++||+|||||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3467799999999999953
No 426
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=59.36 E-value=4.6 Score=34.21 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.5
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.|.-+.+.||+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999644
No 427
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=59.17 E-value=9.5 Score=34.86 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=19.7
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCC
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKI 59 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~ 59 (333)
.....+..|+++..++.|++.||.+
T Consensus 82 ~~~~l~~~gi~~~~~~~L~~ag~~t 106 (400)
T 3lda_A 82 PIEKLQVNGITMADVKKLRESGLHT 106 (400)
T ss_dssp BGGGGCCTTCCHHHHHHHHHTTCCB
T ss_pred CHHHHHhCCCCHHHHHHHHHcCCCc
Confidence 3446677789999999999988875
No 428
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=58.73 E-value=3.5 Score=32.57 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=11.5
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
++.-+++.|+.|||||...-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp -CCEEEEECCC----CHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35668999999999997443
No 429
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=58.68 E-value=5.3 Score=32.30 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=14.3
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
|.-+.+.+|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 345789999999999643
No 430
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=58.66 E-value=4.4 Score=33.99 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.0
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
+.-+.+.||+|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467999999999999643
No 431
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=58.50 E-value=4.6 Score=33.00 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.1
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
=.++.||+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3688999999999643
No 432
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=58.42 E-value=3.9 Score=36.90 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=12.5
Q ss_pred EEEECCCCcHHHHH
Q psy18032 77 VVAMARTGSGKTAC 90 (333)
Q Consensus 77 ~l~~a~TGsGKT~~ 90 (333)
.+++|+||+|||..
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999964
No 433
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=58.09 E-value=4.2 Score=33.35 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=15.9
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.|.=+.+.||+|+|||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45669999999999996443
No 434
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=57.55 E-value=7 Score=38.92 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.7
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999997554
No 435
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=57.47 E-value=9.4 Score=41.61 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=27.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
|+.+++.+|+|||||...+--+.+.+.. +..++++.-...
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~-----G~~vlYI~te~~ 73 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAEHA 73 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhC-----CCceEEEEecCc
Confidence 6789999999999996555444444433 456777765543
No 436
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=57.24 E-value=5.2 Score=33.61 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=14.8
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+-+.+.||+|||||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778999999999995
No 437
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=57.12 E-value=4.8 Score=32.60 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.2
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+.-+++.|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46679999999999996443
No 438
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=57.10 E-value=4.4 Score=38.31 Aligned_cols=53 Identities=17% Similarity=0.076 Sum_probs=32.2
Q ss_pred CCCcccccCCCHHHHHHHHhCC--CCCCcHHHHhHHHHH--hcCCcEEEECCCCcHHHHHHH
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRG--YKIPTPIQRKTIPLV--LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i--~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+|+++.-.++....+++.- +..|. .+..+ .-.+.+++.||+|+|||...-
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~-----~~~~lg~~ip~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPS-----RFHEMGARIPKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGG-----GTTTTSCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchh-----hhhhccCCCCceEEEECCCCCCHHHHHH
Confidence 5678999987777766665531 11111 11110 012459999999999997544
No 439
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=57.05 E-value=4.8 Score=32.60 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.1
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+.-+++.|+.|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 45679999999999996443
No 440
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=56.85 E-value=1.7 Score=43.74 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=33.8
Q ss_pred cCCCcccccCCCHHHHHHHHhC-CC--CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKR-GY--KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~-g~--~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|++++-.+.+.+.+.+. .+ ..+...... .+..++.+++.||+|+|||..+-
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~GppGtGKT~Lak 529 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCC---CCCCCCCCCCBCCTTSSHHHHHH
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhc---CCCCCceeEEECCCCCCHHHHHH
Confidence 3445788887777777777664 22 111111000 12346789999999999997443
No 441
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=56.83 E-value=5 Score=31.87 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=12.7
Q ss_pred EEEECCCCcHHHHHH
Q psy18032 77 VVAMARTGSGKTACF 91 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~ 91 (333)
+.+.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999643
No 442
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=56.76 E-value=5.1 Score=33.67 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.9
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
+..+++.||.|||||...
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456999999999999644
No 443
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=56.70 E-value=4 Score=32.47 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=12.7
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
-+.+++++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999543
No 444
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=56.65 E-value=5.1 Score=32.10 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=13.1
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
.+.+.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3689999999999633
No 445
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=56.49 E-value=11 Score=32.33 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=29.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHH-HhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLE-KLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~-~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|..+++.+.+|+||| .+.+-.+. .+.. |-++++++- .+-..++.+.++.++
T Consensus 21 gs~~li~g~p~~~~~-~l~~qfl~~g~~~-----Ge~~~~~~~-~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 21 SLILIHEEDASSRGK-DILFYILSRKLKS-----DNLVGMFSI-SYPLQLIIRILSRFG 72 (260)
T ss_dssp CEEEEEECSGGGCHH-HHHHHHHHHHHHT-----TCEEEEEEC-SSCHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCccHH-HHHHHHHHHHHHC-----CCcEEEEEE-eCCHHHHHHHHHHcC
Confidence 456888877777777 33333333 3332 446777654 445666667777653
No 446
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=56.33 E-value=4.3 Score=41.95 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=26.7
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-++.||+|||.+|.+|++..+..
T Consensus 48 I~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~ 81 (997)
T 4a4z_A 48 VYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN 81 (997)
T ss_dssp HHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc
Confidence 4455566678889999999999999998765543
No 447
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=56.22 E-value=4.2 Score=42.05 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=24.0
Q ss_pred ccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 300 EGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 300 ~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++..+.-++.||+|||.+|.+|++..+..
T Consensus 100 ~g~~vLV~apTGSGKTlva~lai~~~l~~ 128 (1010)
T 2xgj_A 100 RGESVLVSAHTSAGKTVVAEYAIAQSLKN 128 (1010)
T ss_dssp HTCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEECCCCCChHHHHHHHHHHHhcc
Confidence 34567778999999999999999987754
No 448
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=56.13 E-value=6.3 Score=32.60 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=15.3
Q ss_pred hcCCcEEEECCCCcHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~ 89 (333)
..|+-+.+.||+|||||.
T Consensus 33 ~~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp ETTCCEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 356778999999999996
No 449
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=56.05 E-value=3.3 Score=35.10 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.6
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.-++++|++|||||...-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999996443
No 450
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=56.03 E-value=5.1 Score=32.87 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.7
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999643
No 451
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=55.99 E-value=11 Score=32.90 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.0
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
|.-+.+.||+|+|||...
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 334789999999999543
No 452
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=55.97 E-value=4.8 Score=32.30 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.5
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
-+.+.|++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999644
No 453
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=55.28 E-value=7.7 Score=38.58 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.7
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
++++.||+|+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 59999999999997554
No 454
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=55.26 E-value=5.3 Score=39.74 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.9
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+.++++.||+|+|||...-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4679999999999997544
No 455
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=55.12 E-value=6.1 Score=32.98 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.9
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+-+.+.||+|||||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778999999999996
No 456
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=54.87 E-value=5.1 Score=32.44 Aligned_cols=17 Identities=24% Similarity=-0.003 Sum_probs=13.8
Q ss_pred CcEEEECCCCcHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACF 91 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~ 91 (333)
.=+.+.|++|||||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999643
No 457
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=54.85 E-value=5.6 Score=31.67 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.0
Q ss_pred EEEECCCCcHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL 92 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~ 92 (333)
+.+.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999996443
No 458
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=54.78 E-value=6.7 Score=34.46 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=15.3
Q ss_pred cCCcEEEECCCCcHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~ 90 (333)
.|+-+.++||+|||||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 467799999999999963
No 459
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=54.63 E-value=46 Score=28.31 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=48.3
Q ss_pred CCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hCC-
Q psy18032 82 RTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS- 157 (333)
Q Consensus 82 ~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~~- 157 (333)
...+||-. ++.-++..+.. .+.++||.+.++..+..+.+.+... .|+.+..++|+.+..++.+.+ .++
T Consensus 92 ~~~s~K~~-~L~~ll~~~~~----~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 163 (271)
T 1z5z_A 92 VRRSGKMI-RTMEIIEEALD----EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNP 163 (271)
T ss_dssp STTCHHHH-HHHHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCT
T ss_pred cccCHHHH-HHHHHHHHHHh----CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 34577764 33344444332 2568999999999998888888762 267788889988766554443 223
Q ss_pred -CC-EEEEC
Q psy18032 158 -PD-IVVAT 164 (333)
Q Consensus 158 -~~-IlI~T 164 (333)
+. +|++|
T Consensus 164 ~~~v~L~st 172 (271)
T 1z5z_A 164 SVKFIVLSV 172 (271)
T ss_dssp TCCEEEEEC
T ss_pred CCCEEEEeh
Confidence 45 45555
No 460
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.58 E-value=9.5 Score=32.95 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.4
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
++++.||+|+|||....
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999996543
No 461
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=54.55 E-value=6.1 Score=33.43 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=15.0
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+-+.+.||+|||||.
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778999999999996
No 462
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=54.50 E-value=44 Score=30.54 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=24.1
Q ss_pred CcHHHHhHHHHHh---cCCcEEEECCCCcHHHHHHH
Q psy18032 60 PTPIQRKTIPLVL---EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 60 ~~~~Q~~~i~~i~---~g~d~l~~a~TGsGKT~~~~ 92 (333)
|-..-.++|..++ .|+-+.+.+|+|+|||....
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 4445556665544 48889999999999997554
No 463
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=54.39 E-value=5.2 Score=32.71 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=13.3
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999643
No 464
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=54.29 E-value=5.8 Score=32.76 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.2
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999643
No 465
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=54.00 E-value=5.9 Score=32.38 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=14.3
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.-+.+.|+.|||||...-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999996443
No 466
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=53.91 E-value=6.3 Score=33.63 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.4
Q ss_pred hcCCcEEEECCCCcHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~ 89 (333)
-.|+-+.+.||+|||||.
T Consensus 44 ~~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKST 61 (260)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 346779999999999996
No 467
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=53.62 E-value=5.1 Score=32.19 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=15.7
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.|+-+++.|++|+|||...
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4677999999999999543
No 468
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=53.45 E-value=6.5 Score=33.95 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=14.7
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+=+.+.||+|||||.
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46668999999999996
No 469
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=53.26 E-value=23 Score=31.19 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=31.3
Q ss_pred CCHHHHHHHHhCCCC-----CCcHHHH-hHHHHHhc----------------CCcEEEECCCCcHHHHH
Q psy18032 44 LGFEVLKGVLKRGYK-----IPTPIQR-KTIPLVLE----------------GRDVVAMARTGSGKTAC 90 (333)
Q Consensus 44 l~~~l~~~l~~~g~~-----~~~~~Q~-~~i~~i~~----------------g~d~l~~a~TGsGKT~~ 90 (333)
.++++++..++.|+. .++.--. .....+.. |+-+++.|++|+|||..
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~ 160 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSET 160 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHH
Confidence 588899999988765 2222222 22222333 77899999999999753
No 470
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=53.26 E-value=93 Score=25.49 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=52.2
Q ss_pred hcCCcEEEECCCC-cHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 72 LEGRDVVAMARTG-SGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 72 ~~g~d~l~~a~TG-sGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
++++-++|.+.+| -|+.++-.+. . .|.+++++....+-..+..+.+.. .+.++..+..+....+.
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~------~----~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~ 72 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALA------R----EGAAVVVADINAEAAEAVAKQIVA----DGGTAISVAVDVSDPES 72 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHH------H----TTCEEEEEESCHHHHHHHHHHHHH----TTCEEEEEECCTTSHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHH------H----CCCEEEEEcCCHHHHHHHHHHHHh----cCCcEEEEEccCCCHHH
Confidence 4577888888754 4776544432 2 366788888888777777777765 24456666666654444
Q ss_pred HHHhh-------CCCCEEEECchH
Q psy18032 151 FARLH-------ASPDIVVATPGR 167 (333)
Q Consensus 151 ~~~l~-------~~~~IlI~TP~r 167 (333)
.+.+. .+.+++|-..+.
T Consensus 73 ~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 73 AKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 33332 268999987653
No 471
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=53.17 E-value=6 Score=34.15 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=13.9
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
-+++.|++|||||...-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997443
No 472
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=53.14 E-value=6.1 Score=40.00 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.6
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
.+++.||||+|||..+-
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999997554
No 473
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=53.08 E-value=14 Score=32.12 Aligned_cols=18 Identities=28% Similarity=0.195 Sum_probs=13.8
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
++-+.+++++|+|||...
T Consensus 98 ~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SEEEEEECCTTTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778899999999543
No 474
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.00 E-value=6.5 Score=45.52 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=19.6
Q ss_pred HhHHHH-HhcCCcEEEECCCCcHHHHH
Q psy18032 65 RKTIPL-VLEGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 65 ~~~i~~-i~~g~d~l~~a~TGsGKT~~ 90 (333)
...+.. +..++.++++||||+|||..
T Consensus 1294 ~~ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1294 VDVLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCCHHHH
Confidence 334444 45678999999999999953
No 475
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=52.89 E-value=6.1 Score=35.10 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.7
Q ss_pred EEEECCCCcHHHHHH
Q psy18032 77 VVAMARTGSGKTACF 91 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~ 91 (333)
.+++||+|+|||...
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999653
No 476
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=52.43 E-value=6.9 Score=33.28 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.2
Q ss_pred hcCCcEEEECCCCcHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~ 89 (333)
-.|+-+.+.||+|||||.
T Consensus 31 ~~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKST 48 (257)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred eCCCEEEEECCCCCCHHH
Confidence 346678899999999996
No 477
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=52.37 E-value=7 Score=33.51 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=14.7
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+=+.+.||+|||||.
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46678899999999996
No 478
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=52.29 E-value=5.9 Score=33.37 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.7
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+-+.+.||+|||||.
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46668999999999996
No 479
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=52.19 E-value=1e+02 Score=26.33 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=51.4
Q ss_pred hcCCcEEEECCCC-cHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 72 LEGRDVVAMARTG-SGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 72 ~~g~d~l~~a~TG-sGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
++|+-++|.+.+| -|+.++-.+. . .|.+++++.-..+-..+..+.+.. .+.++..+..+....+.
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~------~----~G~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~Dv~d~~~ 94 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFA------R----RGARLVLSDVDQPALEQAVNGLRG----QGFDAHGVVCDVRHLDE 94 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHH------H----TTCEEEEEESCHHHHHHHHHHHHH----TTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH------H----CCCEEEEEECCHHHHHHHHHHHHh----cCCceEEEEccCCCHHH
Confidence 4678899998864 4776554433 2 266788887777777777666665 24556666666654444
Q ss_pred HHHhh-------CCCCEEEECch
Q psy18032 151 FARLH-------ASPDIVVATPG 166 (333)
Q Consensus 151 ~~~l~-------~~~~IlI~TP~ 166 (333)
...+. .+.++||-..+
T Consensus 95 v~~~~~~~~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 95 MVRLADEAFRLLGGVDVVFSNAG 117 (301)
T ss_dssp HHHHHHHHHHHHSSCSEEEECCC
T ss_pred HHHHHHHHHHhCCCCCEEEECCC
Confidence 33332 26899997765
No 480
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=52.14 E-value=6.7 Score=31.80 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=13.7
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
-+.++|+.|||||.+.-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37789999999996543
No 481
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=52.02 E-value=6.5 Score=32.65 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.6
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+-+.+.||+|||||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46668899999999995
No 482
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=52.01 E-value=9.9 Score=35.15 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=40.5
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEE-CCcc---h-H
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLL-GGDS---M-D 148 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~-g~~~---~-~ 148 (333)
.+++++++|+|||....--+.. +.. .|.+++++.. .+.-+.++ ++.++...++.+.... .+.+ . .
T Consensus 101 vI~ivG~~GvGKTTla~~La~~-l~~----~G~kVllv~~D~~r~~a~~q---L~~~~~~~gv~v~~~~~~~~dp~~i~~ 172 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARY-IQK----RGLKPALIAADTYRPAAYEQ---LKQLAEKIHVPIYGDETRTKSPVDIVK 172 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHH-HHH----HHCCEEEECCSCCCTTGGGS---SHHHHHHSSCCEECCSSSCCSSSTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH----cCCeEEEEeccccCchHHHH---HHHhhhccCcceEecCCCCCCHHHHHH
Confidence 6889999999999544322222 222 1345666542 22222222 2233334566554432 1111 1 2
Q ss_pred HHHHHhhCCCC-EEEECchHH
Q psy18032 149 NQFARLHASPD-IVVATPGRF 168 (333)
Q Consensus 149 ~~~~~l~~~~~-IlI~TP~rl 168 (333)
+....+ .+++ |+|=||+++
T Consensus 173 ~~l~~~-~~~D~vIIDT~G~~ 192 (432)
T 2v3c_C 173 EGMEKF-KKADVLIIDTAGRH 192 (432)
T ss_dssp HHHHTT-SSCSEEEEECCCSC
T ss_pred HHHHHh-hCCCEEEEcCCCCc
Confidence 223334 4455 567799875
No 483
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=51.95 E-value=6.5 Score=34.18 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=12.7
Q ss_pred EEEECCCCcHHHHHH
Q psy18032 77 VVAMARTGSGKTACF 91 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~ 91 (333)
+.+.|++|||||...
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999643
No 484
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=51.93 E-value=7.2 Score=32.79 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.8
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+-+.+.||+|+|||.
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999996
No 485
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=51.28 E-value=8.5 Score=34.19 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=15.8
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.|.-+++.||+|+|||....
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45568999999999996444
No 486
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=51.12 E-value=7 Score=32.08 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=12.5
Q ss_pred cEEEECCCCcHHHHH
Q psy18032 76 DVVAMARTGSGKTAC 90 (333)
Q Consensus 76 d~l~~a~TGsGKT~~ 90 (333)
.+++.||+||||+.-
T Consensus 2 ~Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368899999999853
No 487
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=51.11 E-value=7.6 Score=33.16 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=14.6
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+-+.+.||+|||||.
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46668899999999996
No 488
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=51.10 E-value=7.5 Score=32.90 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.2
Q ss_pred cCCcEEEECCCCcHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~ 90 (333)
.|+-+.+.||+|+|||..
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999963
No 489
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=51.07 E-value=92 Score=26.21 Aligned_cols=85 Identities=7% Similarity=0.018 Sum_probs=48.7
Q ss_pred HHHHhcCCcEEEECCC-CcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcc
Q psy18032 68 IPLVLEGRDVVAMART-GSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS 146 (333)
Q Consensus 68 i~~i~~g~d~l~~a~T-GsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 146 (333)
-+.++.++-++|.+.+ |-|+.++-.+. . .|.+++++.-..+-..+..+.++. .+.++..+..+..
T Consensus 18 ~~~m~~~k~~lVTGas~GIG~aia~~la------~----~G~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~Dv~ 83 (279)
T 3sju_A 18 GSHMSRPQTAFVTGVSSGIGLAVARTLA------A----RGIAVYGCARDAKNVSAAVDGLRA----AGHDVDGSSCDVT 83 (279)
T ss_dssp -------CEEEEESTTSHHHHHHHHHHH------H----TTCEEEEEESCHHHHHHHHHHHHT----TTCCEEEEECCTT
T ss_pred cccccCCCEEEEeCCCCHHHHHHHHHHH------H----CCCEEEEEeCCHHHHHHHHHHHHh----cCCcEEEEECCCC
Confidence 3446778889999875 45766544432 2 366788888777777776666654 2455666666665
Q ss_pred hHHHHHHhh-------CCCCEEEECch
Q psy18032 147 MDNQFARLH-------ASPDIVVATPG 166 (333)
Q Consensus 147 ~~~~~~~l~-------~~~~IlI~TP~ 166 (333)
..+..+.+. ...++||-..+
T Consensus 84 d~~~v~~~~~~~~~~~g~id~lv~nAg 110 (279)
T 3sju_A 84 STDEVHAAVAAAVERFGPIGILVNSAG 110 (279)
T ss_dssp CHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 444333322 26899997765
No 490
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=50.81 E-value=15 Score=32.55 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.0
Q ss_pred CCcEEEECCCCcHHHHH
Q psy18032 74 GRDVVAMARTGSGKTAC 90 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~ 90 (333)
|.-+.+.||+|+|||..
T Consensus 129 g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44588999999999953
No 491
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=50.78 E-value=7.8 Score=32.85 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.8
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+-+.+.||+|+|||.
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46678899999999996
No 492
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=50.68 E-value=7.7 Score=33.20 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.2
Q ss_pred cCCcEEEECCCCcHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~ 90 (333)
.|+-+.+.||+|+|||..
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466789999999999963
No 493
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=50.61 E-value=7 Score=32.73 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=14.6
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
|.=+-+.||.|||||...-
T Consensus 25 g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp SEEEEEECSTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4447899999999996443
No 494
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=50.46 E-value=7.7 Score=33.32 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.2
Q ss_pred hcCCcEEEECCCCcHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~ 89 (333)
-.|+-+.+.||+|||||.
T Consensus 43 ~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKST 60 (271)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 346778999999999996
No 495
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=50.46 E-value=7.9 Score=32.96 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.8
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+-+.+.||+|||||.
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46678899999999996
No 496
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=50.44 E-value=10 Score=33.13 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=15.5
Q ss_pred cCCcEEEECCCCcHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~ 90 (333)
.|..+++.||.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 367899999999999963
No 497
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=50.36 E-value=7.4 Score=32.30 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=13.6
Q ss_pred CCcEEEECCCCcHHHHH
Q psy18032 74 GRDVVAMARTGSGKTAC 90 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~ 90 (333)
.+=+++.||+||||+.-
T Consensus 29 ~kiI~llGpPGsGKgTq 45 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQ 45 (217)
T ss_dssp CEEEEEECCTTCCHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34578899999999853
No 498
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=50.23 E-value=7.9 Score=32.88 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=14.7
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.|+-+.+.||+|||||.
T Consensus 30 ~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST 46 (253)
T ss_dssp TTCEEEEECCSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46668899999999996
No 499
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=50.17 E-value=33 Score=33.62 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=51.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcc--------------------------------CCceEEEEECCcchHHHHHHh
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKF--------------------------------TKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~~l 154 (333)
+.++||.+|++.-+....+.+...... ....+...+|+.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 568999999999999999888864321 012477889998877665444
Q ss_pred h----CCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 155 H----ASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 155 ~----~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
. ...+|||+|. .+.. .+++..+.++|
T Consensus 332 ~~f~~g~~~vlvaT~-----~l~~-Gidip~~~~VI 361 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TLAA-GVNLPARTVII 361 (715)
T ss_dssp HHHHTTCSCEEEECG-----GGGG-SSCCCBSEEEE
T ss_pred HHHHcCCCeEEEECh-----HHhc-ccCCCceEEEE
Confidence 3 3589999993 4433 35566666655
No 500
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=50.07 E-value=7.2 Score=32.81 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.0
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
-+.+.|+.|||||...-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999996443
Done!