RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18032
(333 letters)
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 103 bits (256), Expect = 8e-27
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF+ F L E+L+ ++ G++ P+ +Q + IP + G DV+ A++G GKTA F++ L+
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGG--DSMDNQFARLH 155
+L+ T V L++ TRELA Q K + K+ + G ++
Sbjct: 62 QLEPV--TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 119
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187
P IVV TPGR L + L L I++
Sbjct: 120 NCPHIVVGTPGRILALARNKSLNLKHIKHFIL 151
Score = 38.3 bits (88), Expect = 6e-04
Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 17/185 (9%)
Query: 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTC----LLGGDSMDNQFARLHASPDIV 161
SG R +L P A+ F +++Q C +LG D + + + + V
Sbjct: 1 SGFRDFLLKPELLRAIVDCGFEH----PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 56
Query: 162 VATPGRFLHI-----VVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGG--DSMDNQFA 214
+AT + + V+ M K + K+ + G ++
Sbjct: 57 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 116
Query: 215 RLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD--FKQDTSRIALDLVGDSTEMIHK 272
P IVV TPGR L + L L I+ + D K V + M
Sbjct: 117 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 176
Query: 273 QRQSV 277
++Q +
Sbjct: 177 EKQVM 181
Score = 31.4 bits (70), Expect = 0.11
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333
IP + G DV+ A++G GKTA F+ + + +
Sbjct: 31 CIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV 70
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 95.4 bits (236), Expect = 1e-23
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L + +L Y+ PTPIQ+ IP +LE RD++A A+TGSGKTA FLIP++
Sbjct: 23 FDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH 82
Query: 99 L-------KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
L + ++ T+ + LIL+PTRELA+Q ++ T L+S + GG +Q
Sbjct: 83 LVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI 142
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ ++VATPGR + + + ++ L +Y
Sbjct: 143 REVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 175
Score = 32.2 bits (72), Expect = 0.073
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
IP +LE RD++A A+TGSGKTA FL
Sbjct: 51 AIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVC 85
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 91.7 bits (227), Expect = 1e-22
Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 5/147 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR-DVVAMARTGSGKTACFLIPMLE 97
F L +L + +G++ PT IQ K IPL L ++VA ARTGSGKTA F IP++E
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
+ + +G+ A+IL+PTRELA+Q ++ L L+ + GG ++ Q L +
Sbjct: 66 LVNEN---NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-N 121
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQY 184
+IVV TPGR L + L L +++Y
Sbjct: 122 ANIVVGTPGRILDHINRGTLNLKNVKY 148
Score = 44.7 bits (105), Expect = 4e-06
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 12/133 (9%)
Query: 125 KFVKELG--KFTKLQSTCL---LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
++ G K T +Q + L + AR + A P L +
Sbjct: 17 NAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAI 76
Query: 180 ------SSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 233
++ L L+ + GG ++ Q L + +IVV TPGR L
Sbjct: 77 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDH 135
Query: 234 VVEMELKLSSIQL 246
+ L L +++
Sbjct: 136 INRGTLNLKNVKY 148
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 91.5 bits (226), Expect = 2e-22
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+G+ G++ P+ IQ++ I ++G DV+A A++G+GKTA F I +L++
Sbjct: 14 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 73
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLG-GDSMDNQFARLHAS 157
++ +AL+L+PTRELA Q K V LG + +G + +
Sbjct: 74 IELDL--KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 131
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQYTF 186
P I+V TPGR ++ L I+
Sbjct: 132 PHIIVGTPGRVFDMLNRRYLSPKYIKMFV 160
Score = 32.9 bits (74), Expect = 0.030
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
I ++G DV+A A++G+GKTA F + +
Sbjct: 42 AILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL 76
Score = 26.4 bits (57), Expect = 5.2
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 216 LHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTDFKQDTSRIA-LDLVGDSTEMIHKQR 274
+P I+V TPGR ++ L I++ + D + D + D + ++
Sbjct: 128 QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 187
Query: 275 QSV 277
Q V
Sbjct: 188 QVV 190
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 90.6 bits (224), Expect = 3e-22
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+GV G++ P+ IQ++ I ++EG DV+A A++G+GKT F I L++
Sbjct: 12 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 71
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+ T +AL+L+PTRELALQ K V L ++ +GG S L
Sbjct: 72 IDTSV--KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DA 128
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
IVV TPGR + + I+
Sbjct: 129 QIVVGTPGRVFDNIQRRRFRTDKIKM 154
Score = 30.6 bits (68), Expect = 0.21
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333
I ++EG DV+A A++G+GKT F R D
Sbjct: 40 AIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP 79
Score = 28.2 bits (62), Expect = 1.1
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 202 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ-LSLTDFKQDTSRIAL 260
G + + A IVV TPGR + + I+ L + + S
Sbjct: 110 HACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFK 169
Query: 261 DLVGDSTEMIHKQRQSV 277
+ + ++ Q V
Sbjct: 170 EQIYQIFTLLPPTTQVV 186
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 90.7 bits (224), Expect = 4e-22
Identities = 47/132 (35%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL ++L+G+ G++ P+ IQ++ I +++GRDV+A +++G+GKTA F I +L+
Sbjct: 19 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 78
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L +ALIL+PTRELA+Q K + LG + +Q +GG ++ +L
Sbjct: 79 LDIQ--VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 136
Query: 159 DIVVATPGRFLH 170
+V TPGR
Sbjct: 137 HVVAGTPGRVFD 148
Score = 30.6 bits (68), Expect = 0.19
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333
I +++GRDV+A +++G+GKTA F D
Sbjct: 47 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRET 86
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 89.6 bits (221), Expect = 7e-22
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPM 95
G F+ + L E+L G+ + G++ P+PIQ ++IP+ L GRD++A A+ G+GK+ +LIP+
Sbjct: 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPL 61
Query: 96 LEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR-L 154
LE+L ++A+++ PTRELALQ + ++ K G + L
Sbjct: 62 LERLDLKK--DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL 119
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ +V+ATPGR L ++ + K+ +Q
Sbjct: 120 DDTVHVVIATPGRILDLIKKGVAKVDHVQM 149
Score = 34.6 bits (78), Expect = 0.009
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFN 332
+IP+ L GRD++A A+ G+GK+ +L R D N
Sbjct: 33 SIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDN 71
Score = 29.2 bits (64), Expect = 0.51
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 13/166 (7%)
Query: 125 KFVKELG--KFTKLQSTC----LLGGDSMDNQFAR-----LHASPDIVVATPGRFLHIVV 173
+ E+G K + +Q L G D + + P + + +
Sbjct: 16 MGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAM 75
Query: 174 EMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR-LHASPDIVVATPGRFLH 232
+ + ++ K G + L + +V+ATPGR L
Sbjct: 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILD 135
Query: 233 IVVEMELKLSSIQ-LSLTDFKQDTSRIALDLVGDSTEMIHKQRQSV 277
++ + K+ +Q + L + + S+ + ++ D + K RQ +
Sbjct: 136 LIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL 181
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 84.3 bits (207), Expect = 6e-20
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L E+L G+ + G++ P+PIQ + IP+ + GRD++A A+ G+GKTA F+IP LE
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE- 61
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
K + ++ALI+ PTRELALQT + V+ LGK + GG ++ + RL+ +
Sbjct: 62 -KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETV 120
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
I+V TPGR L + LS
Sbjct: 121 HILVGTPGRVLDLASRKVADLSDCSL 146
Score = 30.3 bits (67), Expect = 0.20
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
IP+ + GRD++A A+ G+GKTA F+ +
Sbjct: 31 AIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP 65
Score = 28.0 bits (61), Expect = 1.2
Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 12/165 (7%)
Query: 125 KFVKELG--KFTKLQSTC----LLGGDSMDNQFARLHAS-----PDIVVATPGRFLHIVV 173
+ E G K + +Q + G D + + P + P +
Sbjct: 14 MGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQAL 73
Query: 174 EMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 233
M T + V+ LGK + GG ++ + RL+ + I+V TPGR L +
Sbjct: 74 IMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDL 133
Query: 234 VVEMELKLSSIQ-LSLTDFKQDTSRIALDLVGDSTEMIHKQRQSV 277
LS + + + SR ++ + QS+
Sbjct: 134 ASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSL 178
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 80.7 bits (198), Expect = 2e-18
Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 11/128 (8%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
+ ++ P IQ+ +L A A TG GKT+ L L
Sbjct: 31 KEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGK--- 87
Query: 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL------HASPDI 160
R ++ PT L +Q + +++ + + + L+G + I
Sbjct: 88 --RCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKI 145
Query: 161 VVATPGRF 168
V+ T
Sbjct: 146 VITTTQFL 153
Score = 40.3 bits (93), Expect = 1e-04
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFR 325
+L A A TG GKT+ L F
Sbjct: 51 WAKRILRKESFAATAPTGVGKTSFGLAMSLFL 82
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 72.4 bits (176), Expect = 1e-15
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 10/140 (7%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
+VL+ GY+ P Q + I VL GRD + + TG GK+ C+ IP L
Sbjct: 15 QVLQETF--GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNG------ 66
Query: 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPG 166
+++SP L ++ G ++ ++ ++ P
Sbjct: 67 --LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPE 124
Query: 167 RFLHIVVEMELKLSSIQYTF 186
R + L +
Sbjct: 125 RLMLDNFLEHLAHWNPVLLA 144
Score = 41.9 bits (97), Expect = 3e-05
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
I VL GRD + + TG GK+ C+
Sbjct: 33 IIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGL 67
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 72.3 bits (176), Expect = 5e-15
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 70 LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129
+ + R + G+GKT +L ++ A G+R LIL+PTR +A + + ++
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVR----EAIKRGLRTLILAPTRVVAAEMEEALRG 60
Query: 130 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 172
L + A + + F +
Sbjct: 61 LPIRYQ-----------TPAIRAEHTGREIVDLMCHATFTMRL 92
Score = 36.1 bits (82), Expect = 0.004
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 297 LVLEGRDVVAMARTGSGKTACFLFYFFFR 325
+ + R + G+GKT +L
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVRE 33
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 70.8 bits (172), Expect = 5e-15
Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 9/140 (6%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
+ + + G + P Q + + V G++++ T +GKT + M+ + +
Sbjct: 13 YAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSL 72
Query: 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPG 166
+ P R LA + ++ K+ K +S D I+V T
Sbjct: 73 -----YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCD----IIVTTSE 123
Query: 167 RFLHIVVEMELKLSSIQYTF 186
+ ++ + ++
Sbjct: 124 KADSLIRNRASWIKAVSCLV 143
Score = 36.1 bits (82), Expect = 0.003
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ + V G++++ T +GKT
Sbjct: 32 EAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREA 65
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 70.5 bits (171), Expect = 6e-15
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F F +++ + + PT IQ + IP L G +V ++TG+GKT +L+P++EK
Sbjct: 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
+K + + A ++ +T K K K + + CL+GG +L+
Sbjct: 63 IKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNV 122
Query: 157 SPDIVVATPGRFLHIVVEM 175
P IV+ TPGR + E
Sbjct: 123 QPHIVIGTPGRINDFIREQ 141
Score = 32.0 bits (71), Expect = 0.063
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
IP L G +V ++TG+GKT +L +
Sbjct: 31 IIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP 65
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 48.2 bits (113), Expect = 2e-07
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 52 VLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111
VL+R P Q E + + + TG GKT ++ +L + G + L
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMMIAEYRLTKY----GGKVL 56
Query: 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L+PT+ L LQ + + L + L G S + +
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA 100
Score = 34.8 bits (78), Expect = 0.007
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 299 LEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333
+ + + + TG GKT + +R + +
Sbjct: 21 CKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKV 55
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14)
subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 32.8 bits (75), Expect = 0.015
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 183 QYTFKFVKELGKFTKLQSTC-LLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 241
Q+ K V +G+ K+ T + + + + + + +V + K
Sbjct: 17 QFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEE-ISGIVEVVGRVTAKA 75
Query: 242 SSIQLSLTDFKQDTSRIALDLVGDSTEMIHKQRQ 275
+ + S FK+D+ L L ++ ++IH Q
Sbjct: 76 TILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQ 109
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 32.9 bits (74), Expect = 0.017
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 69 PLVLEGRDVVAM-ARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127
P V + V + A TGSGK+ + G + L+L+P+ L ++
Sbjct: 2 PAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------GYKVLVLNPSVAATLGFGAYM 53
Query: 128 KEL 130
+
Sbjct: 54 SKA 56
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 31.2 bits (69), Expect = 0.089
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 70 LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTH 102
++ +G V G+GKT FL +L +
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR 35
Score = 30.8 bits (68), Expect = 0.096
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 297 LVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333
++ +G V G+GKT FL R
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRT 39
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 31.0 bits (69), Expect = 0.19
Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101
G ++ + ++ ++ + +P E R ++ TG+GK+ +L +L
Sbjct: 20 IVSGGKLKRMTREKAKQVT--VAGVPMPRDAEPRHLLVNGATGTGKSV-----LLRELAY 72
Query: 102 HAATSGVRALILSPTRELALQTFK 125
G R +I+ P ++ + +
Sbjct: 73 TGLLRGDRMVIVDPNGDMLSKFGR 96
Score = 27.2 bits (59), Expect = 3.0
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 277 VRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACF 318
+++ K K V V +P E R ++ TG+GK+
Sbjct: 26 LKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLL 67
>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H
nitroreductase {Escherichia coli, minor form, NfnB
[TaxId: 562]}
Length = 216
Score = 28.4 bits (62), Expect = 0.96
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 272 KQRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNF 331
+R S + +D +KK +T + + + + S + + + G
Sbjct: 7 LKRHSTKAFDASKK----LTPEQAEQIKT-----LLQYSPSSTNSQPWHFIVASTEEGKA 57
Query: 332 NI 333
+
Sbjct: 58 RV 59
>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase)
{Vibrio fischeri [TaxId: 668]}
Length = 217
Score = 28.4 bits (62), Expect = 1.1
Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 272 KQRQSVRKWDPAKKKYVQVTDDTIPLVLE 300
+ R + +K+DP+KK V+ + + ++LE
Sbjct: 9 ENRYTSKKYDPSKK----VSQEDLAVLLE 33
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
{Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Length = 690
Score = 26.8 bits (59), Expect = 4.2
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGK 87
+ K F SF + + + + G K+P + IPL + + + RT
Sbjct: 123 SAFDLKSTPIEFHSF----QDVHDLYEGGIKLPRDVISTIIPLPV----IKELYRTDGQH 174
Query: 88 TACFLIP-MLEKLKTH 102
F P +++ ++
Sbjct: 175 ILKFPQPHVVQVSQSA 190
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain
containing protein METT10D {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 25.9 bits (56), Expect = 6.1
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 42 FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94
FGL ++ L IPT R +E D++ + +
Sbjct: 23 FGLSIDIPLERL-----IPTVPLRLNYIHWVE--DLIGHQDSDKSTLRRGIDI 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.397
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,214,011
Number of extensions: 55316
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 44
Length of query: 333
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,226,816
Effective search space: 303023552
Effective search space used: 303023552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)