Query psy18034
Match_columns 251
No_of_seqs 273 out of 2341
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 20:46:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0337|consensus 100.0 1.2E-41 2.7E-46 299.4 12.1 239 1-241 263-502 (529)
2 KOG0345|consensus 100.0 1.3E-33 2.8E-38 251.6 12.6 185 1-206 257-444 (567)
3 KOG0328|consensus 100.0 2.6E-33 5.7E-38 236.4 11.7 127 1-127 268-394 (400)
4 KOG0342|consensus 100.0 1.9E-32 4.2E-37 245.3 13.7 179 1-201 332-510 (543)
5 KOG0330|consensus 100.0 9.5E-32 2.1E-36 235.1 11.9 125 2-126 303-427 (476)
6 KOG0331|consensus 100.0 1.7E-31 3.6E-36 245.1 12.4 125 1-125 343-467 (519)
7 COG0513 SrmB Superfamily II DN 100.0 1.2E-30 2.6E-35 244.9 13.0 123 1-123 275-398 (513)
8 KOG0340|consensus 100.0 4.5E-30 9.8E-35 222.4 12.2 126 2-127 257-382 (442)
9 KOG0333|consensus 100.0 2.5E-29 5.3E-34 226.8 12.3 119 1-119 519-637 (673)
10 PRK04837 ATP-dependent RNA hel 100.0 4E-29 8.7E-34 230.1 12.5 126 1-126 257-382 (423)
11 KOG0326|consensus 100.0 3.5E-29 7.7E-34 214.5 9.2 127 1-127 324-450 (459)
12 KOG0348|consensus 100.0 6.2E-28 1.3E-32 218.2 15.9 194 1-204 427-652 (708)
13 KOG0332|consensus 100.0 3.1E-28 6.8E-33 212.2 12.9 126 1-126 332-464 (477)
14 KOG0343|consensus 100.0 5.5E-28 1.2E-32 219.3 14.6 181 1-201 315-498 (758)
15 PRK11776 ATP-dependent RNA hel 100.0 8.8E-28 1.9E-32 223.4 14.8 126 1-126 244-369 (460)
16 PRK10590 ATP-dependent RNA hel 100.0 9.8E-28 2.1E-32 222.8 14.7 125 1-125 247-371 (456)
17 PRK11634 ATP-dependent RNA hel 100.0 1.9E-27 4.2E-32 227.6 16.5 129 1-129 247-375 (629)
18 PTZ00110 helicase; Provisional 99.9 1.3E-27 2.8E-32 226.1 14.2 120 1-120 379-498 (545)
19 PRK04537 ATP-dependent RNA hel 99.9 2.5E-27 5.4E-32 225.2 14.6 126 1-126 259-384 (572)
20 PRK11192 ATP-dependent RNA hel 99.9 2.7E-27 5.9E-32 218.5 14.2 124 1-124 247-370 (434)
21 PRK01297 ATP-dependent RNA hel 99.9 1E-26 2.2E-31 217.0 15.3 123 1-123 337-459 (475)
22 KOG0338|consensus 99.9 1.5E-26 3.3E-31 208.3 14.6 117 1-117 428-544 (691)
23 PLN00206 DEAD-box ATP-dependen 99.9 9.9E-27 2.2E-31 219.1 13.4 120 1-120 369-489 (518)
24 KOG0336|consensus 99.9 3.4E-27 7.4E-32 207.9 8.3 120 1-120 467-586 (629)
25 PTZ00424 helicase 45; Provisio 99.9 1.8E-26 3.9E-31 210.6 13.0 126 1-126 269-394 (401)
26 KOG0347|consensus 99.9 2E-26 4.4E-31 209.0 8.7 123 1-123 465-587 (731)
27 TIGR00614 recQ_fam ATP-depende 99.9 1.4E-25 3E-30 209.1 14.1 115 2-116 229-343 (470)
28 KOG0335|consensus 99.9 8.3E-26 1.8E-30 204.8 11.2 119 1-119 339-457 (482)
29 KOG0327|consensus 99.9 1.2E-25 2.6E-30 196.8 11.6 127 1-127 265-391 (397)
30 PRK11057 ATP-dependent DNA hel 99.9 5.9E-25 1.3E-29 210.5 14.4 114 1-114 238-351 (607)
31 KOG0341|consensus 99.9 2.4E-25 5.2E-30 195.2 10.1 118 1-118 423-541 (610)
32 PLN03137 ATP-dependent DNA hel 99.9 5.1E-25 1.1E-29 216.7 13.3 115 1-115 682-796 (1195)
33 TIGR03817 DECH_helic helicase/ 99.9 1.1E-24 2.3E-29 212.3 12.8 125 1-125 273-407 (742)
34 KOG0344|consensus 99.9 3.1E-24 6.8E-29 196.3 12.5 117 2-118 390-507 (593)
35 PRK04914 ATP-dependent helicas 99.9 1.3E-23 2.7E-28 207.3 15.9 126 1-126 495-623 (956)
36 TIGR01389 recQ ATP-dependent D 99.9 1.6E-23 3.5E-28 200.3 13.8 114 1-114 226-339 (591)
37 KOG0350|consensus 99.9 1.1E-23 2.3E-28 189.6 10.4 120 1-120 431-554 (620)
38 COG0514 RecQ Superfamily II DN 99.9 4.5E-22 9.7E-27 186.0 14.0 114 2-115 233-346 (590)
39 KOG0346|consensus 99.9 1.1E-22 2.4E-27 180.8 9.1 120 1-120 270-424 (569)
40 KOG0349|consensus 99.9 1.1E-21 2.4E-26 174.4 14.8 133 1-133 507-674 (725)
41 KOG0339|consensus 99.9 7.7E-22 1.7E-26 178.0 9.8 118 1-118 470-587 (731)
42 KOG4284|consensus 99.9 9.4E-22 2E-26 181.6 10.0 108 1-108 274-381 (980)
43 KOG0334|consensus 99.9 1.7E-21 3.6E-26 188.2 11.0 118 1-118 615-732 (997)
44 COG1111 MPH1 ERCC4-like helica 99.8 8.4E-21 1.8E-25 171.8 12.8 105 1-106 368-481 (542)
45 PF00271 Helicase_C: Helicase 99.8 4.5E-21 9.8E-26 135.6 8.5 78 17-94 1-78 (78)
46 PRK09200 preprotein translocas 99.8 1E-20 2.2E-25 183.1 11.9 105 1-107 430-542 (790)
47 PRK05298 excinuclease ABC subu 99.8 4.2E-20 9.1E-25 178.0 15.8 127 1-128 448-588 (652)
48 PRK13767 ATP-dependent helicas 99.8 2.6E-20 5.5E-25 184.8 14.5 103 1-103 286-395 (876)
49 PRK12898 secA preprotein trans 99.8 1.5E-20 3.2E-25 178.6 12.0 105 1-107 475-587 (656)
50 TIGR00580 mfd transcription-re 99.8 2.4E-20 5.2E-25 184.5 13.4 117 1-117 662-787 (926)
51 cd00079 HELICc Helicase superf 99.8 2.8E-20 6.1E-25 143.0 10.9 101 1-101 30-130 (131)
52 TIGR00631 uvrb excinuclease AB 99.8 6.3E-20 1.4E-24 176.2 14.1 116 1-117 444-564 (655)
53 PHA02653 RNA helicase NPH-II; 99.8 5.6E-20 1.2E-24 176.5 11.7 110 1-113 397-521 (675)
54 PRK10689 transcription-repair 99.8 8.5E-20 1.8E-24 184.0 12.1 117 1-117 811-936 (1147)
55 PRK09751 putative ATP-dependen 99.8 1.6E-19 3.4E-24 183.8 14.0 126 1-127 246-408 (1490)
56 PRK10917 ATP-dependent DNA hel 99.8 4.6E-19 1E-23 171.9 14.7 104 1-104 473-587 (681)
57 TIGR01587 cas3_core CRISPR-ass 99.8 2.6E-19 5.6E-24 161.3 12.1 101 1-104 224-334 (358)
58 TIGR03714 secA2 accessory Sec 99.8 2.5E-19 5.4E-24 172.3 11.8 104 1-107 426-538 (762)
59 TIGR00643 recG ATP-dependent D 99.8 6.3E-19 1.4E-23 169.7 14.6 103 1-103 450-563 (630)
60 TIGR01970 DEAH_box_HrpB ATP-de 99.8 2E-19 4.3E-24 176.2 11.3 108 1-109 211-339 (819)
61 PRK13766 Hef nuclease; Provisi 99.8 4.5E-19 9.8E-24 174.6 13.4 104 1-105 367-478 (773)
62 PRK02362 ski2-like helicase; P 99.8 1.6E-18 3.4E-23 169.8 13.6 106 1-106 245-397 (737)
63 PRK11664 ATP-dependent RNA hel 99.8 5.3E-19 1.1E-23 173.4 9.5 107 1-108 214-341 (812)
64 TIGR00963 secA preprotein tran 99.8 2.2E-18 4.8E-23 165.0 12.5 105 1-107 407-518 (745)
65 TIGR02621 cas3_GSU0051 CRISPR- 99.8 3.1E-18 6.7E-23 166.3 11.1 100 1-105 274-390 (844)
66 smart00490 HELICc helicase sup 99.8 5.7E-18 1.2E-22 119.5 9.0 81 14-94 2-82 (82)
67 PHA02558 uvsW UvsW helicase; P 99.7 7.9E-18 1.7E-22 158.2 12.1 99 1-99 346-445 (501)
68 KOG0354|consensus 99.7 1.3E-17 2.9E-22 158.3 12.9 111 1-113 415-536 (746)
69 PRK12906 secA preprotein trans 99.7 9.6E-18 2.1E-22 161.8 11.4 105 1-107 442-554 (796)
70 TIGR00603 rad25 DNA repair hel 99.7 2.4E-17 5.3E-22 158.4 13.2 104 1-109 498-610 (732)
71 PRK00254 ski2-like helicase; P 99.7 2.9E-17 6.4E-22 160.5 12.7 107 1-107 240-389 (720)
72 KOG0351|consensus 99.7 1.5E-17 3.3E-22 163.4 10.3 114 2-115 488-601 (941)
73 PRK01172 ski2-like helicase; P 99.7 9.9E-17 2.1E-21 155.8 13.2 106 1-107 238-379 (674)
74 PRK12900 secA preprotein trans 99.7 4.5E-17 9.7E-22 158.7 10.5 106 1-108 600-713 (1025)
75 PRK11131 ATP-dependent RNA hel 99.7 3.9E-17 8.4E-22 164.3 10.0 105 1-108 288-413 (1294)
76 KOG0352|consensus 99.7 1.9E-16 4.1E-21 141.0 9.2 111 2-112 258-368 (641)
77 COG1201 Lhr Lhr-like helicases 99.7 2.2E-15 4.8E-20 145.9 15.5 105 1-105 255-361 (814)
78 TIGR01967 DEAH_box_HrpA ATP-de 99.6 4.9E-16 1.1E-20 156.7 10.3 105 1-108 281-406 (1283)
79 TIGR03158 cas3_cyano CRISPR-as 99.6 7.6E-16 1.7E-20 139.0 8.8 82 1-91 274-357 (357)
80 PLN03142 Probable chromatin-re 99.6 2.8E-14 6.1E-19 142.1 12.3 106 1-106 489-599 (1033)
81 TIGR01054 rgy reverse gyrase. 99.5 2.2E-14 4.7E-19 145.6 10.7 74 1-78 328-409 (1171)
82 PRK09401 reverse gyrase; Revie 99.5 1.3E-14 2.9E-19 147.0 8.0 87 1-92 330-430 (1176)
83 PRK14701 reverse gyrase; Provi 99.5 1.2E-14 2.6E-19 150.6 6.8 107 1-112 332-462 (1638)
84 COG1202 Superfamily II helicas 99.5 3.7E-14 7.9E-19 130.5 7.5 106 1-106 442-553 (830)
85 PRK09694 helicase Cas3; Provis 99.5 2.1E-13 4.6E-18 134.4 10.9 92 1-95 562-664 (878)
86 COG1061 SSL2 DNA or RNA helica 99.5 6.2E-13 1.3E-17 123.2 12.3 92 1-93 285-376 (442)
87 KOG0353|consensus 99.4 1.7E-13 3.6E-18 121.0 6.0 111 2-112 320-473 (695)
88 TIGR00595 priA primosomal prot 99.4 1.1E-12 2.4E-17 123.3 10.8 93 12-104 271-379 (505)
89 PRK12904 preprotein translocas 99.4 2.9E-12 6.3E-17 124.7 12.0 105 1-107 432-574 (830)
90 PRK11448 hsdR type I restricti 99.4 3.8E-12 8.3E-17 128.7 12.1 92 1-94 700-801 (1123)
91 KOG0329|consensus 99.4 2.2E-13 4.8E-18 114.6 2.5 74 53-126 302-376 (387)
92 PRK05580 primosome assembly pr 99.4 3.7E-12 8E-17 123.7 10.8 99 9-107 436-550 (679)
93 COG0556 UvrB Helicase subunit 99.4 8.5E-12 1.9E-16 114.3 12.1 113 1-114 448-565 (663)
94 COG1200 RecG RecG-like helicas 99.3 1E-11 2.2E-16 117.1 11.7 98 10-107 492-592 (677)
95 KOG0953|consensus 99.3 1.2E-11 2.7E-16 113.6 11.2 148 6-158 363-526 (700)
96 PRK13104 secA preprotein trans 99.3 1.1E-11 2.5E-16 121.0 11.4 104 2-107 447-588 (896)
97 PRK13107 preprotein translocas 99.3 2.1E-11 4.4E-16 119.0 12.7 105 1-107 451-592 (908)
98 COG1204 Superfamily II helicas 99.2 3.5E-11 7.6E-16 117.6 9.6 111 1-111 255-414 (766)
99 COG1197 Mfd Transcription-repa 99.2 1.5E-10 3.2E-15 114.9 11.4 115 2-116 806-929 (1139)
100 COG1205 Distinct helicase fami 99.2 5.5E-11 1.2E-15 117.6 8.1 119 1-119 308-437 (851)
101 KOG4150|consensus 99.2 4.7E-11 1E-15 110.2 6.8 124 1-124 527-660 (1034)
102 COG4098 comFA Superfamily II D 99.1 8.5E-10 1.8E-14 96.6 12.4 100 2-103 308-413 (441)
103 KOG0950|consensus 99.1 5.2E-10 1.1E-14 108.4 10.0 114 1-114 462-619 (1008)
104 KOG0390|consensus 99.0 5E-09 1.1E-13 101.2 11.2 104 2-105 598-706 (776)
105 COG1203 CRISPR-associated heli 98.9 4.8E-09 1E-13 103.0 11.1 106 1-109 442-553 (733)
106 COG1643 HrpA HrpA-like helicas 98.9 2E-09 4.2E-14 105.6 7.9 104 2-106 262-387 (845)
107 KOG0384|consensus 98.9 1.2E-08 2.6E-13 101.1 11.7 106 1-106 701-811 (1373)
108 KOG0922|consensus 98.8 7.2E-09 1.6E-13 97.5 7.5 106 2-108 261-392 (674)
109 KOG0947|consensus 98.8 3.8E-08 8.2E-13 95.7 12.4 115 2-117 570-733 (1248)
110 KOG0385|consensus 98.8 2E-08 4.3E-13 95.7 10.2 107 1-107 489-600 (971)
111 KOG0387|consensus 98.8 2.6E-08 5.7E-13 95.2 9.6 115 1-115 548-670 (923)
112 KOG0951|consensus 98.8 2.8E-08 6E-13 98.8 9.8 115 1-115 548-711 (1674)
113 KOG0392|consensus 98.7 4.7E-08 1E-12 97.0 10.0 107 1-107 1342-1455(1549)
114 PRK12903 secA preprotein trans 98.7 1E-07 2.2E-12 93.0 10.9 103 2-107 429-540 (925)
115 KOG0923|consensus 98.7 4E-08 8.7E-13 92.4 7.1 103 2-105 476-605 (902)
116 KOG0952|consensus 98.7 1.1E-07 2.4E-12 93.4 9.8 115 1-115 351-500 (1230)
117 COG0553 HepA Superfamily II DN 98.6 2.9E-07 6.3E-12 91.7 11.7 106 1-106 713-822 (866)
118 KOG0924|consensus 98.6 8.2E-08 1.8E-12 90.7 5.5 103 2-105 566-696 (1042)
119 COG1110 Reverse gyrase [DNA re 98.5 4.9E-07 1.1E-11 88.9 10.0 71 2-77 338-416 (1187)
120 KOG0920|consensus 98.5 1.8E-07 3.9E-12 92.1 6.7 104 2-106 416-544 (924)
121 KOG0948|consensus 98.5 1.3E-07 2.8E-12 90.1 5.4 105 2-106 386-539 (1041)
122 PRK12326 preprotein translocas 98.5 9.2E-07 2E-11 85.2 11.0 103 2-107 430-548 (764)
123 COG4096 HsdR Type I site-speci 98.4 9.7E-07 2.1E-11 85.3 8.2 91 1-93 428-525 (875)
124 PRK12899 secA preprotein trans 98.4 3E-06 6.5E-11 83.7 11.2 103 2-107 571-682 (970)
125 KOG1002|consensus 98.4 1.8E-06 3.8E-11 79.3 8.6 107 1-107 640-750 (791)
126 TIGR01407 dinG_rel DnaQ family 98.3 3.8E-06 8.3E-11 84.1 11.6 74 1-77 676-755 (850)
127 COG1198 PriA Primosomal protei 98.3 3.3E-06 7.1E-11 82.1 10.0 100 12-111 493-608 (730)
128 KOG1000|consensus 98.3 3.7E-06 8.1E-11 77.2 9.3 118 1-118 494-617 (689)
129 KOG0388|consensus 98.3 4.3E-06 9.3E-11 79.6 9.4 104 1-104 1046-1152(1185)
130 TIGR00348 hsdR type I site-spe 98.3 1.3E-05 2.8E-10 78.3 12.9 103 1-104 516-649 (667)
131 COG4581 Superfamily II RNA hel 98.2 1.7E-05 3.8E-10 79.2 12.8 83 26-108 447-539 (1041)
132 PRK12901 secA preprotein trans 98.2 5.5E-06 1.2E-10 82.3 9.0 104 2-107 631-742 (1112)
133 KOG0389|consensus 98.2 1.1E-05 2.5E-10 77.5 10.3 109 1-109 779-891 (941)
134 KOG0391|consensus 98.2 1.5E-05 3.2E-10 79.5 11.0 106 1-106 1278-1387(1958)
135 PF13307 Helicase_C_2: Helicas 98.1 8.2E-06 1.8E-10 65.9 7.4 74 1-78 11-92 (167)
136 PRK13103 secA preprotein trans 98.1 9.1E-06 2E-10 80.2 8.8 103 2-107 452-592 (913)
137 KOG1123|consensus 98.1 2.6E-05 5.6E-10 72.0 10.0 106 1-111 545-658 (776)
138 KOG0949|consensus 98.1 1.2E-05 2.6E-10 79.0 8.1 80 26-105 965-1047(1330)
139 KOG0926|consensus 98.0 2.3E-06 5E-11 82.4 2.2 80 25-105 606-703 (1172)
140 CHL00122 secA preprotein trans 97.9 9.6E-05 2.1E-09 72.8 10.9 63 2-66 427-491 (870)
141 KOG0386|consensus 97.9 5.2E-05 1.1E-09 74.7 8.7 103 1-103 728-833 (1157)
142 PF06862 DUF1253: Protein of u 97.8 0.00037 7.9E-09 64.4 13.1 112 1-112 302-421 (442)
143 COG4889 Predicted helicase [Ge 97.8 2.6E-05 5.6E-10 76.1 4.9 101 3-103 464-585 (1518)
144 KOG1015|consensus 97.7 0.00016 3.5E-09 71.2 9.1 101 1-101 1144-1270(1567)
145 PRK08074 bifunctional ATP-depe 97.7 0.00029 6.2E-09 71.4 11.2 78 1-78 754-835 (928)
146 KOG4439|consensus 97.6 0.0004 8.6E-09 66.5 9.5 88 13-100 760-850 (901)
147 COG1199 DinG Rad3-related DNA 97.6 0.00081 1.8E-08 65.6 11.9 101 1-104 481-615 (654)
148 PF13871 Helicase_C_4: Helicas 97.5 0.00027 5.7E-09 61.5 7.0 77 40-116 52-140 (278)
149 PRK07246 bifunctional ATP-depe 97.5 0.0014 3E-08 65.6 12.6 74 1-77 649-724 (820)
150 PRK11747 dinG ATP-dependent DN 97.4 0.0016 3.5E-08 64.1 11.9 73 1-77 536-615 (697)
151 PRK12902 secA preprotein trans 97.4 0.0012 2.6E-08 65.4 10.1 63 2-66 442-506 (939)
152 TIGR00596 rad1 DNA repair prot 97.2 0.00074 1.6E-08 67.1 6.8 48 54-104 431-512 (814)
153 smart00492 HELICc3 helicase su 97.2 0.0075 1.6E-07 47.4 10.7 67 12-78 4-79 (141)
154 KOG0925|consensus 97.2 0.00095 2.1E-08 61.7 6.3 99 2-105 256-386 (699)
155 TIGR00604 rad3 DNA repair heli 97.0 0.0084 1.8E-07 59.1 11.6 76 2-78 525-615 (705)
156 smart00491 HELICc2 helicase su 96.9 0.01 2.2E-07 46.7 9.7 66 12-78 4-80 (142)
157 PRK10917 ATP-dependent DNA hel 96.6 0.0077 1.7E-07 59.2 8.3 73 1-73 312-389 (681)
158 KOG1016|consensus 96.5 0.01 2.3E-07 57.8 8.1 102 1-102 721-843 (1387)
159 TIGR02562 cas3_yersinia CRISPR 96.5 0.014 3.1E-07 58.9 9.4 91 3-96 760-882 (1110)
160 TIGR03117 cas_csf4 CRISPR-asso 96.5 0.032 6.9E-07 54.2 11.3 78 1-80 472-563 (636)
161 TIGR00643 recG ATP-dependent D 96.2 0.017 3.7E-07 56.2 8.0 73 1-73 286-363 (630)
162 PRK05580 primosome assembly pr 96.2 0.024 5.2E-07 55.7 8.7 74 1-75 192-266 (679)
163 COG0653 SecA Preprotein transl 96.2 0.0076 1.7E-07 59.4 5.1 102 2-105 432-544 (822)
164 PF13959 DUF4217: Domain of un 96.0 0.0042 9.2E-08 42.1 1.9 47 154-203 5-52 (65)
165 TIGR00580 mfd transcription-re 95.9 0.029 6.3E-07 56.9 8.2 73 1-73 502-579 (926)
166 TIGR00595 priA primosomal prot 95.8 0.038 8.2E-07 52.4 8.2 72 1-73 27-99 (505)
167 KOG1001|consensus 95.8 0.0019 4.2E-08 62.9 -0.6 99 1-99 541-641 (674)
168 KOG0701|consensus 95.7 0.0065 1.4E-07 63.7 2.7 93 2-94 295-399 (1606)
169 PRK10689 transcription-repair 95.3 0.062 1.4E-06 55.7 8.1 73 1-73 651-728 (1147)
170 COG0513 SrmB Superfamily II DN 95.2 0.064 1.4E-06 51.0 7.5 68 2-73 102-180 (513)
171 KOG1513|consensus 95.0 0.043 9.3E-07 53.9 5.4 64 41-104 849-921 (1300)
172 KOG0339|consensus 95.0 0.27 5.9E-06 46.2 10.4 67 2-72 299-375 (731)
173 COG1110 Reverse gyrase [DNA re 94.8 0.076 1.6E-06 53.5 6.8 59 1-59 127-191 (1187)
174 KOG2340|consensus 94.7 0.18 3.8E-06 47.6 8.4 110 2-111 555-673 (698)
175 PRK14873 primosome assembly pr 94.6 0.21 4.6E-06 48.9 9.2 82 12-106 440-539 (665)
176 KOG0331|consensus 94.6 0.19 4.2E-06 47.4 8.5 104 1-111 167-288 (519)
177 PRK14701 reverse gyrase; Provi 94.4 0.12 2.7E-06 55.3 7.6 58 1-58 124-187 (1638)
178 COG1200 RecG RecG-like helicas 94.3 0.19 4.1E-06 48.7 7.9 73 1-73 313-390 (677)
179 PF10593 Z1: Z1 domain; Inter 94.1 0.3 6.5E-06 41.8 8.1 96 13-114 101-201 (239)
180 PRK14873 primosome assembly pr 93.7 0.23 4.9E-06 48.8 7.5 74 1-75 190-265 (665)
181 PRK11776 ATP-dependent RNA hel 93.7 0.18 4E-06 47.0 6.7 69 1-73 74-153 (460)
182 KOG0951|consensus 93.6 0.48 1E-05 49.0 9.5 109 1-113 1361-1501(1674)
183 TIGR01054 rgy reverse gyrase. 93.4 0.22 4.7E-06 52.0 7.1 58 1-58 123-187 (1171)
184 KOG0347|consensus 93.4 0.19 4.1E-06 47.6 6.0 52 2-57 266-321 (731)
185 TIGR00614 recQ_fam ATP-depende 92.9 0.42 9.1E-06 44.9 7.8 58 1-58 53-110 (470)
186 cd00268 DEADc DEAD-box helicas 92.7 0.59 1.3E-05 38.1 7.5 68 1-72 71-148 (203)
187 PF02399 Herpes_ori_bp: Origin 92.6 0.72 1.6E-05 45.8 9.0 89 2-96 285-379 (824)
188 PRK11634 ATP-dependent RNA hel 92.4 0.4 8.6E-06 46.9 7.0 68 1-72 76-154 (629)
189 PRK10590 ATP-dependent RNA hel 91.9 0.67 1.5E-05 43.3 7.8 69 1-73 77-155 (456)
190 PRK04537 ATP-dependent RNA hel 91.7 0.49 1.1E-05 45.6 6.8 68 1-72 86-164 (572)
191 TIGR01389 recQ ATP-dependent D 91.6 0.82 1.8E-05 44.2 8.1 57 1-57 55-111 (591)
192 PRK11192 ATP-dependent RNA hel 91.5 0.73 1.6E-05 42.6 7.5 69 1-73 75-153 (434)
193 COG1198 PriA Primosomal protei 91.3 0.32 6.9E-06 48.0 5.0 71 1-72 247-318 (730)
194 PRK04837 ATP-dependent RNA hel 90.1 1.2 2.6E-05 41.1 7.6 69 1-73 85-163 (423)
195 PTZ00110 helicase; Provisional 89.9 1 2.2E-05 43.2 7.1 68 2-73 206-283 (545)
196 COG1197 Mfd Transcription-repa 89.2 1.7 3.6E-05 44.9 8.1 72 1-72 645-721 (1139)
197 KOG0921|consensus 88.5 0.43 9.3E-06 47.7 3.4 102 2-104 646-772 (1282)
198 PRK11057 ATP-dependent DNA hel 88.5 2 4.3E-05 41.8 8.0 57 1-57 67-123 (607)
199 PRK01297 ATP-dependent RNA hel 88.0 2.3 4.9E-05 39.9 7.9 70 1-73 164-243 (475)
200 PRK09401 reverse gyrase; Revie 87.4 1.4 3.1E-05 46.1 6.6 57 1-57 125-187 (1176)
201 PLN03137 ATP-dependent DNA hel 87.1 2.4 5.2E-05 44.0 7.8 56 2-57 503-560 (1195)
202 KOG0334|consensus 84.9 2 4.3E-05 43.6 5.9 58 2-65 441-502 (997)
203 PF00270 DEAD: DEAD/DEAH box h 83.9 4.9 0.00011 31.3 6.9 69 1-73 46-125 (169)
204 KOG0335|consensus 83.4 2.7 5.8E-05 39.5 5.7 68 1-72 154-231 (482)
205 COG1111 MPH1 ERCC4-like helica 83.4 28 0.0006 33.1 12.2 122 1-127 60-195 (542)
206 KOG0298|consensus 83.2 1.5 3.2E-05 45.5 4.2 93 1-98 1223-1316(1394)
207 cd01524 RHOD_Pyr_redox Member 82.8 2.1 4.6E-05 30.1 3.9 34 1-34 53-86 (90)
208 KOG0330|consensus 81.0 5.1 0.00011 36.7 6.3 82 2-87 132-232 (476)
209 PLN00206 DEAD-box ATP-dependen 79.0 6.6 0.00014 37.4 6.9 69 1-73 198-276 (518)
210 PRK13766 Hef nuclease; Provisi 78.9 7.4 0.00016 38.9 7.5 69 1-74 60-138 (773)
211 KOG0329|consensus 78.4 5 0.00011 34.8 5.2 67 2-72 113-190 (387)
212 COG0514 RecQ Superfamily II DN 78.3 6.6 0.00014 38.0 6.6 56 2-57 60-115 (590)
213 TIGR00963 secA preprotein tran 78.2 7.2 0.00016 38.8 7.0 52 1-58 99-154 (745)
214 KOG0338|consensus 78.1 6.1 0.00013 37.5 6.1 53 1-57 254-310 (691)
215 cd01523 RHOD_Lact_B Member of 77.2 3.1 6.6E-05 29.8 3.3 33 2-34 64-96 (100)
216 KOG0350|consensus 77.1 7.2 0.00016 36.9 6.2 73 1-73 217-301 (620)
217 TIGR03817 DECH_helic helicase/ 76.3 6.7 0.00015 39.2 6.4 68 1-73 83-163 (742)
218 smart00450 RHOD Rhodanese Homo 75.7 3.6 7.7E-05 28.6 3.3 34 1-34 58-92 (100)
219 PRK12898 secA preprotein trans 74.4 9.1 0.0002 37.6 6.5 58 1-65 146-207 (656)
220 cd01529 4RHOD_Repeats Member o 73.4 7.1 0.00015 27.7 4.4 34 1-34 58-92 (96)
221 KOG0345|consensus 72.4 10 0.00022 35.6 6.0 69 2-73 82-163 (567)
222 PRK09751 putative ATP-dependen 72.1 10 0.00022 40.8 6.7 69 1-73 39-130 (1490)
223 PRK13104 secA preprotein trans 72.0 13 0.00028 37.8 7.0 52 1-58 125-180 (896)
224 KOG0343|consensus 71.8 9 0.00019 36.8 5.5 51 2-57 144-198 (758)
225 cd01534 4RHOD_Repeat_3 Member 71.0 5.5 0.00012 28.2 3.3 34 1-34 58-91 (95)
226 KOG0340|consensus 71.0 7.3 0.00016 35.3 4.6 52 2-57 78-133 (442)
227 KOG0342|consensus 70.9 11 0.00024 35.6 5.8 53 1-57 156-213 (543)
228 smart00115 CASc Caspase, inter 70.3 50 0.0011 28.0 9.6 80 2-87 11-106 (241)
229 PF01751 Toprim: Toprim domain 70.3 4.9 0.00011 29.1 2.9 64 2-65 1-76 (100)
230 cd00046 DEXDc DEAD-like helica 67.6 26 0.00056 25.4 6.6 54 1-58 32-88 (144)
231 PRK13767 ATP-dependent helicas 66.8 14 0.0003 37.7 6.2 69 1-73 86-178 (876)
232 cd01526 RHOD_ThiF Member of th 66.4 6.1 0.00013 29.6 2.8 35 1-35 74-110 (122)
233 KOG1133|consensus 66.2 66 0.0014 32.0 10.1 74 2-78 632-720 (821)
234 smart00493 TOPRIM topoisomeras 66.0 32 0.00069 23.0 6.2 60 1-62 1-60 (76)
235 cd03418 GRX_GRXb_1_3_like Glut 65.6 36 0.00079 22.5 7.5 54 1-54 1-56 (75)
236 cd01518 RHOD_YceA Member of th 65.3 7.4 0.00016 27.9 3.0 33 2-34 64-97 (101)
237 cd01533 4RHOD_Repeat_2 Member 64.8 8.8 0.00019 27.9 3.4 34 2-35 69-104 (109)
238 PRK02362 ski2-like helicase; P 64.6 9.7 0.00021 38.0 4.6 66 1-73 69-143 (737)
239 PRK12899 secA preprotein trans 64.4 20 0.00043 36.7 6.6 50 2-57 138-191 (970)
240 cd01525 RHOD_Kc Member of the 63.8 9.2 0.0002 27.4 3.3 33 2-34 68-101 (105)
241 KOG0348|consensus 63.4 13 0.00027 35.7 4.7 87 2-89 214-317 (708)
242 PF12683 DUF3798: Protein of u 63.1 4.1 8.9E-05 35.4 1.4 75 1-81 64-144 (275)
243 cd01527 RHOD_YgaP Member of th 62.9 11 0.00024 26.8 3.5 34 1-34 56-90 (99)
244 PTZ00424 helicase 45; Provisio 62.5 38 0.00083 30.6 7.8 69 1-73 98-176 (401)
245 cd01519 RHOD_HSP67B2 Member of 60.4 11 0.00023 27.1 3.1 32 2-33 69-101 (106)
246 cd01528 RHOD_2 Member of the R 60.2 11 0.00025 26.9 3.2 34 1-34 60-94 (101)
247 cd00032 CASc Caspase, interleu 59.8 1.1E+02 0.0023 25.9 9.9 74 9-88 31-108 (243)
248 cd01521 RHOD_PspE2 Member of t 59.4 13 0.00027 27.2 3.4 34 1-34 66-101 (110)
249 cd01447 Polysulfide_ST Polysul 59.4 8.2 0.00018 27.5 2.3 34 1-34 63-97 (103)
250 PRK09200 preprotein translocas 58.4 25 0.00055 35.4 6.1 51 1-57 121-176 (790)
251 TIGR02621 cas3_GSU0051 CRISPR- 58.3 19 0.00041 36.5 5.3 52 1-56 63-142 (844)
252 cd01532 4RHOD_Repeat_1 Member 57.9 16 0.00034 25.8 3.6 33 2-34 53-88 (92)
253 TIGR02196 GlrX_YruB Glutaredox 57.7 29 0.00064 22.4 4.8 54 2-55 2-56 (74)
254 cd01444 GlpE_ST GlpE sulfurtra 56.8 15 0.00032 25.7 3.3 33 1-33 58-91 (96)
255 KOG0351|consensus 56.6 31 0.00067 35.5 6.5 56 2-57 307-364 (941)
256 PRK10329 glutaredoxin-like pro 54.9 68 0.0015 22.2 7.1 56 1-57 2-58 (81)
257 PRK00254 ski2-like helicase; P 53.9 25 0.00054 35.0 5.4 66 1-73 70-144 (720)
258 PRK10287 thiosulfate:cyanide s 53.2 22 0.00048 26.1 3.8 33 2-34 63-95 (104)
259 TIGR02981 phageshock_pspE phag 51.9 24 0.00051 25.7 3.7 32 2-33 61-92 (101)
260 COG0610 Type I site-specific r 51.6 57 0.0012 33.8 7.6 65 39-104 581-651 (962)
261 PLN02160 thiosulfate sulfurtra 49.4 22 0.00047 27.4 3.4 34 1-34 83-117 (136)
262 smart00487 DEXDc DEAD-like hel 49.4 1.2E+02 0.0026 23.3 10.0 68 1-72 56-134 (201)
263 PRK12904 preprotein translocas 49.2 47 0.001 33.7 6.4 50 2-57 125-178 (830)
264 COG3587 Restriction endonuclea 49.1 38 0.00083 34.3 5.6 70 49-118 483-565 (985)
265 COG1205 Distinct helicase fami 49.0 49 0.0011 33.7 6.6 120 1-124 117-259 (851)
266 cd01522 RHOD_1 Member of the R 48.5 22 0.00047 26.4 3.1 33 2-34 67-100 (117)
267 cd03031 GRX_GRX_like Glutaredo 48.1 77 0.0017 24.9 6.3 45 1-45 1-52 (147)
268 KOG0389|consensus 47.1 60 0.0013 32.7 6.5 83 3-89 452-550 (941)
269 COG1204 Superfamily II helicas 46.3 41 0.00089 33.9 5.5 111 1-123 78-205 (766)
270 PF02142 MGS: MGS-like domain 46.1 13 0.00027 26.7 1.5 48 6-57 17-68 (95)
271 PRK13103 secA preprotein trans 45.3 61 0.0013 33.2 6.4 51 2-58 126-180 (913)
272 PRK01172 ski2-like helicase; P 44.9 43 0.00094 33.0 5.4 66 1-73 67-141 (674)
273 cd00158 RHOD Rhodanese Homolog 43.7 39 0.00085 22.7 3.7 34 1-34 52-86 (89)
274 PRK05320 rhodanese superfamily 43.4 31 0.00067 29.8 3.7 35 1-35 177-212 (257)
275 cd01535 4RHOD_Repeat_4 Member 43.0 38 0.00083 26.3 3.9 33 2-34 52-85 (145)
276 PRK15483 type III restriction- 41.9 31 0.00066 35.6 3.9 70 49-118 501-580 (986)
277 KOG0352|consensus 41.1 54 0.0012 30.8 5.0 56 2-57 64-121 (641)
278 PRK10310 PTS system galactitol 40.8 1.3E+02 0.0029 21.4 6.7 60 1-67 4-69 (94)
279 smart00851 MGS MGS-like domain 40.7 44 0.00096 23.4 3.6 40 17-57 24-63 (90)
280 TIGR00696 wecB_tagA_cpsF bacte 40.7 1.7E+02 0.0036 23.7 7.4 51 4-54 53-105 (177)
281 PF00581 Rhodanese: Rhodanese- 40.2 21 0.00046 25.4 1.9 33 2-34 70-108 (113)
282 PRK01415 hypothetical protein; 40.0 34 0.00074 29.4 3.4 35 1-35 173-208 (247)
283 PRK00162 glpE thiosulfate sulf 38.5 39 0.00084 24.4 3.1 33 2-34 61-94 (108)
284 PRK06827 phosphoribosylpyropho 37.9 79 0.0017 29.0 5.6 53 6-59 274-329 (382)
285 PHA02653 RNA helicase NPH-II; 37.4 91 0.002 31.0 6.3 67 1-73 224-297 (675)
286 KOG0346|consensus 37.3 50 0.0011 31.0 4.1 53 2-58 96-154 (569)
287 PF14617 CMS1: U3-containing 9 36.1 92 0.002 26.9 5.4 83 2-87 129-233 (252)
288 TIGR03714 secA2 accessory Sec 35.9 97 0.0021 31.2 6.2 50 2-57 114-172 (762)
289 cd03027 GRX_DEP Glutaredoxin ( 32.6 1.5E+02 0.0032 19.5 6.9 55 2-56 3-58 (73)
290 COG0607 PspE Rhodanese-related 32.4 34 0.00073 24.4 1.9 33 2-34 64-97 (110)
291 KOG1180|consensus 32.2 2.1E+02 0.0046 27.9 7.5 73 1-76 117-194 (678)
292 PHA03371 circ protein; Provisi 32.0 42 0.0009 28.4 2.5 46 58-103 29-88 (240)
293 PF13380 CoA_binding_2: CoA bi 31.4 1.7E+02 0.0037 21.7 5.7 48 3-53 59-106 (116)
294 PF11823 DUF3343: Protein of u 31.4 1.2E+02 0.0025 20.5 4.4 28 2-29 4-31 (73)
295 TIGR00365 monothiol glutaredox 31.2 2E+02 0.0043 20.5 7.1 43 1-43 13-61 (97)
296 cd06533 Glyco_transf_WecG_TagA 31.0 2.6E+02 0.0056 22.2 7.1 51 4-54 51-104 (171)
297 KOG0336|consensus 30.9 1.4E+02 0.0031 27.9 5.9 52 2-57 297-351 (629)
298 KOG1132|consensus 30.0 4.1E+02 0.0089 27.4 9.3 75 2-77 564-655 (945)
299 PHA02558 uvsW UvsW helicase; P 29.9 97 0.0021 29.4 5.0 61 1-72 160-227 (501)
300 KOG4284|consensus 29.6 1.2E+02 0.0026 30.2 5.4 67 1-72 95-172 (980)
301 PF03808 Glyco_tran_WecB: Glyc 29.6 2.6E+02 0.0057 22.2 6.9 52 4-55 53-107 (172)
302 cd02131 PA_hNAALADL2_like PA_h 29.5 1.6E+02 0.0035 23.4 5.3 58 3-62 19-78 (153)
303 TIGR00631 uvrb excinuclease AB 29.1 3.7E+02 0.0081 26.6 9.0 89 1-89 56-175 (655)
304 cd01422 MGS Methylglyoxal synt 29.0 94 0.002 23.1 3.9 38 19-57 40-78 (115)
305 PRK00142 putative rhodanese-re 28.7 64 0.0014 28.7 3.4 35 1-35 173-208 (314)
306 PF09413 DUF2007: Domain of un 27.5 99 0.0022 20.2 3.5 32 1-32 1-32 (67)
307 PRK10638 glutaredoxin 3; Provi 27.4 2E+02 0.0044 19.5 6.9 53 2-54 4-57 (83)
308 KOG0337|consensus 27.3 1.5E+02 0.0033 27.8 5.5 69 1-73 92-170 (529)
309 PRK05298 excinuclease ABC subu 27.3 4.3E+02 0.0094 26.1 9.1 90 1-90 59-179 (652)
310 cd03028 GRX_PICOT_like Glutare 27.2 2.2E+02 0.0048 19.8 7.1 42 1-42 9-56 (90)
311 TIGR03590 PseG pseudaminic aci 27.1 4.1E+02 0.0088 22.9 8.2 34 48-84 102-135 (279)
312 KOG0341|consensus 26.7 95 0.0021 28.8 4.0 52 2-57 249-310 (610)
313 KOG0326|consensus 26.2 69 0.0015 28.9 3.0 53 1-57 155-211 (459)
314 TIGR00096 probable S-adenosylm 26.0 1.4E+02 0.0031 26.0 5.0 64 3-68 28-91 (276)
315 PF04364 DNA_pol3_chi: DNA pol 25.5 1.4E+02 0.003 22.9 4.4 66 1-77 31-96 (137)
316 PRK11784 tRNA 2-selenouridine 25.3 2E+02 0.0043 26.0 6.0 45 1-46 90-135 (345)
317 COG1201 Lhr Lhr-like helicases 25.3 1.2E+02 0.0026 30.9 4.8 78 13-94 91-188 (814)
318 COG1168 MalY Bifunctional PLP- 25.2 1.2E+02 0.0026 27.8 4.4 94 1-94 160-266 (388)
319 PF01113 DapB_N: Dihydrodipico 24.8 3E+02 0.0064 20.5 6.4 54 2-57 70-123 (124)
320 COG4087 Soluble P-type ATPase 24.8 2.2E+02 0.0048 22.2 5.2 53 4-56 48-101 (152)
321 cd01423 MGS_CPS_I_III Methylgl 24.4 1.1E+02 0.0024 22.5 3.5 20 9-28 12-31 (116)
322 KOG0383|consensus 24.2 38 0.00082 33.6 1.2 61 1-62 633-696 (696)
323 TIGR00290 MJ0570_dom MJ0570-re 23.9 1.7E+02 0.0036 24.8 4.9 93 9-105 71-188 (223)
324 cd01027 TOPRIM_RNase_M5_like T 23.9 2.5E+02 0.0055 19.4 5.7 52 2-58 3-54 (81)
325 PF10657 RC-P840_PscD: Photosy 23.8 1.3E+02 0.0028 22.9 3.7 37 39-75 64-106 (144)
326 PF11496 HDA2-3: Class II hist 23.8 4.3E+02 0.0092 23.3 7.6 110 1-110 119-249 (297)
327 KOG0385|consensus 23.1 2.8E+02 0.0061 28.2 6.7 55 3-60 221-279 (971)
328 COG0074 SucD Succinyl-CoA synt 23.0 4.3E+02 0.0093 23.4 7.2 49 2-50 69-117 (293)
329 cd02976 NrdH NrdH-redoxin (Nrd 22.9 2.1E+02 0.0045 18.0 7.3 54 2-55 2-56 (73)
330 TIGR00036 dapB dihydrodipicoli 21.9 5.1E+02 0.011 22.2 8.2 48 8-55 77-124 (266)
331 TIGR03167 tRNA_sel_U_synt tRNA 21.8 1.2E+02 0.0026 27.0 3.8 34 2-35 77-111 (311)
332 PRK01221 putative deoxyhypusin 21.4 2.2E+02 0.0048 25.4 5.3 48 11-58 43-91 (312)
333 cd03363 TOPRIM_TopoIA_TopoI TO 21.3 3.6E+02 0.0078 20.2 6.8 61 1-62 1-86 (123)
334 PRK05234 mgsA methylglyoxal sy 21.3 1.6E+02 0.0035 22.9 4.0 17 40-56 66-82 (142)
335 cd00133 PTS_IIB PTS_IIB: subun 21.2 2.5E+02 0.0054 18.3 6.2 52 1-60 1-57 (84)
336 TIGR03158 cas3_cyano CRISPR-as 21.1 3.4E+02 0.0074 24.3 6.7 35 1-35 41-83 (357)
337 cd01542 PBP1_TreR_like Ligand- 21.0 3.8E+02 0.0083 21.8 6.7 46 11-56 17-62 (259)
338 COG1335 PncA Amidases related 21.0 2.5E+02 0.0054 22.6 5.4 47 14-60 123-169 (205)
339 KOG0327|consensus 20.2 2.3E+02 0.005 26.1 5.2 64 42-106 115-178 (397)
340 COG0553 HepA Superfamily II DN 20.1 11 0.00023 37.7 -3.6 40 54-95 484-523 (866)
341 KOG0952|consensus 20.0 2.1E+02 0.0046 30.0 5.4 113 1-121 166-298 (1230)
No 1
>KOG0337|consensus
Probab=100.00 E-value=1.2e-41 Score=299.37 Aligned_cols=239 Identities=45% Similarity=0.689 Sum_probs=220.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
+++|||+|+++|+++...|+..|+.+..++|.|+++.|...+.+|+.++..+||.||+++||+|+|..+.|||||+|.++
T Consensus 263 ~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~ 342 (529)
T KOG0337|consen 263 QTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDD 342 (529)
T ss_pred ceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccCCccccccccccccccCCCcchhhHHHHHHHHHH
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADDSMKGKIRHQDGMFGKIPQGLMEDQISEIMNWVE 160 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
..|+||+||++|+|+.|++|+++.+.+.+++.++..++|+++.....+..-.. ....+++..|+...+...+...++++
T Consensus 343 klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~-~~t~vigr~P~~~v~~~~~~~q~~~~ 421 (529)
T KOG0337|consen 343 KLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDC-DDTTVIGRSPQSLVSLESEGHQSILE 421 (529)
T ss_pred ceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccchhhhcc-ccceeeccCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987765433222 22247899999999999999999999
Q ss_pred hhHhhHHHHHHhHHHHHHHHhcCCCCchhhhhhhhccccccccccccccccCc-cHHHHHHHHHHhcCCCCCCceeeeec
Q psy18034 161 LDADMEGIQKTCNNAYKKYVKSRPGASVESVKKVKELELATMQVHPLFRNIGS-AEQEKFNLLTKMSEYRPPSTVLEFGK 239 (251)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~i~r~k~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~tv~e~~~ 239 (251)
.+.+++.+.+.+.++.+.|.+++|+++++|++|+|+++..+ +.|+.+..-.+ +|.++.+++.++++||+.+||||+++
T Consensus 422 ~~~el~~l~~~a~ka~~~y~rtr~~~s~es~kR~ke~~~~~-g~~~~~~~~~e~~e~e~~~~~~kik~~r~~~tiFe~~~ 500 (529)
T KOG0337|consen 422 SNRELQVLARTADKAEMLYTRTRPSPSPESLKRAKEMISSK-GLHPRFKSFGENEEKEKLDILYKIKNYRSRETIFEINK 500 (529)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHhhhccc-CCCcccccccchhhHHhhHHHHHHhhcccchhhhhhhh
Confidence 99999999999999999999999999999999999997776 77888876443 57888999999999999999999997
Q ss_pred cc
Q psy18034 240 AR 241 (251)
Q Consensus 240 ~~ 241 (251)
+.
T Consensus 501 ~~ 502 (529)
T KOG0337|consen 501 SD 502 (529)
T ss_pred hH
Confidence 64
No 2
>KOG0345|consensus
Probab=100.00 E-value=1.3e-33 Score=251.63 Aligned_cols=185 Identities=28% Similarity=0.349 Sum_probs=153.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~ 78 (251)
|+|||++||..+++++..|... ...+..+||.|.+.+|..++++|++....+|+|||+++||||+|++++||+||+|.
T Consensus 257 K~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~ 336 (567)
T KOG0345|consen 257 KCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPK 336 (567)
T ss_pred cEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCC
Confidence 6899999999999999999877 67899999999999999999999998999999999999999999999999999999
Q ss_pred ChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhC-CCCeeccCCccccccccccccccCCCcchhhHHHHHHH
Q psy18034 79 KAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLG-RKPVLADDSMKGKIRHQDGMFGKIPQGLMEDQISEIMN 157 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (251)
+++.|+||+|||||+|+.|.+++|+.+.|..|+.-+ +.-+ ..+.... .+.. .+.....+.+
T Consensus 337 ~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl-~i~~~v~le~~~----------------~e~~-~~~~~~~ir~ 398 (567)
T KOG0345|consen 337 DPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL-RIKGKVELERID----------------TEKA-SLSVYQDIRS 398 (567)
T ss_pred ChhHHHhhcchhhhccCccceEEEecccHHHHHHHH-HhcCccchhhhc----------------cccc-chhHHHHHHH
Confidence 999999999999999999999999999888777433 2222 1111111 0111 0113444555
Q ss_pred HHHhhHhhHHHHHHhHHHHHHHHhcCCCCchhhhhhhhccccccccccc
Q psy18034 158 WVELDADMEGIQKTCNNAYKKYVKSRPGASVESVKKVKELELATMQVHP 206 (251)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~i~r~k~l~~~~~~~~~ 206 (251)
|..++ ++.++...+|+++|.|+|.+|.+.+|++.|+||+.+++...
T Consensus 399 ~~~~D---R~~~dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~lA~~Y 444 (567)
T KOG0345|consen 399 IISKD---RAVLDKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGKLATLY 444 (567)
T ss_pred Hhccc---HHHHhhhHHHHHHHHHHHhhcceeEEEeecCCcHHHHHHHH
Confidence 55444 46888999999999999999999999999999999886443
No 3
>KOG0328|consensus
Probab=100.00 E-value=2.6e-33 Score=236.36 Aligned_cols=127 Identities=34% Similarity=0.562 Sum_probs=124.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|++|||||+..+++|.+.++..++.+.++||+|++++|..++.+||.|+.+||++||+.+||+|+|.|+.|||||+|.+.
T Consensus 268 QavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nr 347 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNR 347 (400)
T ss_pred eEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~ 127 (251)
+.|+||+||.||.|++|.++.|+..+++..+.+++++++..+.++|.
T Consensus 348 e~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 348 ELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred HHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999988874
No 4
>KOG0342|consensus
Probab=100.00 E-value=1.9e-32 Score=245.28 Aligned_cols=179 Identities=29% Similarity=0.419 Sum_probs=153.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+|+..+.+++++|+...++|..+||+++|..|..+..+|++.+..|||||||+|||+|+|+|+|||+||+|.++
T Consensus 332 KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~ 411 (543)
T KOG0342|consen 332 KIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDP 411 (543)
T ss_pred eEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccCCccccccccccccccCCCcchhhHHHHHHHHHH
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADDSMKGKIRHQDGMFGKIPQGLMEDQISEIMNWVE 160 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
..|+||+|||||.|..|.+++++.+.|++++..+. ..++..++ +|..-.++-.....++..
T Consensus 412 ~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e----------------~~~~~~~~v~~~~~~li~ 472 (543)
T KOG0342|consen 412 EQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFE----------------FPPLKPEDVQSQLEKLIS 472 (543)
T ss_pred HHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccC----------------CCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887 34444443 222323333444445554
Q ss_pred hhHhhHHHHHHhHHHHHHHHhcCCCCchhhhhhhhcccccc
Q psy18034 161 LDADMEGIQKTCNNAYKKYVKSRPGASVESVKKVKELELAT 201 (251)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~i~r~k~l~~~~ 201 (251)
++. ...+.+-.+|++|...|.+++...++.+..+++..
T Consensus 473 ~~y---~~~~aak~ay~syl~~y~s~slk~~~~~~~l~La~ 510 (543)
T KOG0342|consen 473 KNY---SLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLELAA 510 (543)
T ss_pred HHh---hHHHHHHHHHHhhhhhccchhhhcccccchhhHHH
Confidence 443 35677889999999999999999988876666653
No 5
>KOG0330|consensus
Probab=99.97 E-value=9.5e-32 Score=235.12 Aligned_cols=125 Identities=35% Similarity=0.544 Sum_probs=122.0
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCChh
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAK 81 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~ 81 (251)
+||||+|+.+++.++-.|+..|+.+..+||.|++..|...+++|++|..+||||||+++||+|+|.|++|||||+|.+..
T Consensus 303 ~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~sk 382 (476)
T KOG0330|consen 303 VIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSK 382 (476)
T ss_pred EEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 82 LFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 82 ~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
.|+||+||+||+|++|.++++++..|+..+..|+..++.+....+
T Consensus 383 DYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~ 427 (476)
T KOG0330|consen 383 DYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYK 427 (476)
T ss_pred HHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccC
Confidence 999999999999999999999999999999999999999886654
No 6
>KOG0331|consensus
Probab=99.97 E-value=1.7e-31 Score=245.08 Aligned_cols=125 Identities=35% Similarity=0.544 Sum_probs=117.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+|+..|+.|...|+..++++.++||+.+|.+|..+++.|++|++.||||||+|+||||+|+|++|||||+|.++
T Consensus 343 KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~v 422 (519)
T KOG0331|consen 343 KVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNV 422 (519)
T ss_pred cEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeec
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLA 125 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~ 125 (251)
+.|+||+|||||+|+.|.+++|++..+......+...+...-+..
T Consensus 423 EdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v 467 (519)
T KOG0331|consen 423 EDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTV 467 (519)
T ss_pred HHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999888888777765444333
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-30 Score=244.89 Aligned_cols=123 Identities=41% Similarity=0.602 Sum_probs=119.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+..|+.|+..|...|+.+..+||+|+|.+|.+.++.|++|+.+||||||+++||||+|++++|||||+|.++
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~ 354 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDP 354 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCc-cHHHHHHHHHHhCCCCe
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSD-ELCYYLDLLLFLGRKPV 123 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~i~~~l~~~~~ 123 (251)
+.|+||+|||||+|+.|.+++|+++. |...+..++..++..++
T Consensus 355 e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 355 EDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred HHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999986 99999999999877754
No 8
>KOG0340|consensus
Probab=99.97 E-value=4.5e-30 Score=222.42 Aligned_cols=126 Identities=29% Similarity=0.499 Sum_probs=123.1
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCChh
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAK 81 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~ 81 (251)
++||++|+.+|+.|+..|+..++.+.++||.|+|.+|...+.+|+.+..+|||||||++||+|||.|+.|||||+|.+|.
T Consensus 257 imIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~ 336 (442)
T KOG0340|consen 257 IMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPK 336 (442)
T ss_pred EEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccC
Q psy18034 82 LFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 82 ~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~ 127 (251)
.|+||+||++|+|+.|.+++++++.+...+..|+...|.++.+.+.
T Consensus 337 ~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 337 DYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred HHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999987763
No 9
>KOG0333|consensus
Probab=99.96 E-value=2.5e-29 Score=226.84 Aligned_cols=119 Identities=36% Similarity=0.546 Sum_probs=113.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
.+|||+|++..|+.|++.|.+.|+.|..+||+-+|++|+..++.|+.|..+||||||+++||||+|+|++|||||++.+.
T Consensus 519 piIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksi 598 (673)
T KOG0333|consen 519 PIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSI 598 (673)
T ss_pred CEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLG 119 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~ 119 (251)
..|.||+|||||+|+.|.+++|+++.+-.-+.+|...+.
T Consensus 599 eDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 599 EDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred HHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHH
Confidence 999999999999999999999999998776666666554
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=4e-29 Score=230.08 Aligned_cols=126 Identities=30% Similarity=0.493 Sum_probs=120.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+|+..|+.+++.|...|+.+..+||+|++.+|..++++|++|+++||||||+++||+|+|++++|||||+|.++
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~ 336 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDC 336 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
..|+||+||+||+|+.|.+++|+++++...+..++.+++..++..+
T Consensus 337 ~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~ 382 (423)
T PRK04837 337 EDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSK 382 (423)
T ss_pred hheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCcc
Confidence 9999999999999999999999999999999999999888775443
No 11
>KOG0326|consensus
Probab=99.96 E-value=3.5e-29 Score=214.49 Aligned_cols=127 Identities=31% Similarity=0.505 Sum_probs=124.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+|||||+...+|.+++.+.+.|+.|.++|+.|.|+.|..++..|++|.++.|||||.+.||+|++.+++|||||+|.++
T Consensus 324 QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~a 403 (459)
T KOG0326|consen 324 QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNA 403 (459)
T ss_pred ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~ 127 (251)
++|+||+||+||.|..|.++.+++-++...+..++..+|..+.++|+
T Consensus 404 EtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 404 ETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred HHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 99999999999999999999999999999999999999999998874
No 12
>KOG0348|consensus
Probab=99.95 E-value=6.2e-28 Score=218.24 Aligned_cols=194 Identities=22% Similarity=0.297 Sum_probs=150.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----------------------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----------------------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----------------------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
|+|||+++++.|++-+..|... +.+...+||+|+|++|..++..|+...-.||+||||
T Consensus 427 k~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDV 506 (708)
T KOG0348|consen 427 KMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDV 506 (708)
T ss_pred eeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhh
Confidence 6899999999999999988653 345778999999999999999999999999999999
Q ss_pred cccccccccccEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccCCcccccccccc
Q psy18034 59 AARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADDSMKGKIRHQDG 138 (251)
Q Consensus 59 ~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 138 (251)
++||+|+|+|++||+||+|.++..|+||+|||+|+|.+|.+++|+.|.|..|+..+...... +...+. ..
T Consensus 507 AaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~-l~q~~~---------~~ 576 (708)
T KOG0348|consen 507 AARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIM-LLQFDM---------EI 576 (708)
T ss_pred hhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcch-hhccch---------hh
Confidence 99999999999999999999999999999999999999999999999999988776655333 222221 11
Q ss_pred ccccCC----CcchhhHHHHHHHHHHh----hHhhHHHHHHhHHHHHHHHhcCCCCc--hhhhhhhhccccccccc
Q psy18034 139 MFGKIP----QGLMEDQISEIMNWVEL----DADMEGIQKTCNNAYKKYVKSRPGAS--VESVKKVKELELATMQV 204 (251)
Q Consensus 139 ~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~y~~~r~~~~--~~~i~r~k~l~~~~~~~ 204 (251)
++..++ +....++.+....|..+ -.+.+.+...+.+++.+|++.|..+. .++||.++.+.++.++-
T Consensus 577 ~l~~~~~~~~k~~~~e~~~~at~~q~~~e~~~~~~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~AK 652 (708)
T KOG0348|consen 577 LLPAFKPRKDKAKTKEWQERATTLQLNLERLVVGDEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVAK 652 (708)
T ss_pred hhhhcCcccccccchhhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHHH
Confidence 111111 11112233333333222 12335678889999999999999885 67799998887776643
No 13
>KOG0332|consensus
Probab=99.95 E-value=3.1e-28 Score=212.18 Aligned_cols=126 Identities=29% Similarity=0.498 Sum_probs=117.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC---
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP--- 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P--- 77 (251)
++||||.|++++.+|+..|.+.|..+.++||+|.-.+|..+++.|+.|+.+|||+|++++||+|++.|+.|||||+|
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~ 411 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKY 411 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCcccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CChhhHHHHhhhcccCCCCceEEEEecC-ccHHHHHHHHHHhCCCCeecc
Q psy18034 78 ---CKAKLFVHRVGRCARAGRSGVAYSLVSS-DELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 78 ---~~~~~y~qr~GR~gR~g~~g~~i~l~~~-~e~~~~~~i~~~l~~~~~~~~ 126 (251)
.++++|+||+||+||+|+.|.++.|+.. +....+..|+.+.+.++....
T Consensus 412 ~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 412 TGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred CCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecC
Confidence 5799999999999999999999999975 456677789999887776655
No 14
>KOG0343|consensus
Probab=99.95 E-value=5.5e-28 Score=219.26 Aligned_cols=181 Identities=23% Similarity=0.299 Sum_probs=145.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~ 78 (251)
|+|||++||..|.++++.++.. |+++.++||.|.|..|.+++.+|-..+..||.|||+++||+|+|.|+|||++|+|.
T Consensus 315 K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe 394 (758)
T KOG0343|consen 315 KSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE 394 (758)
T ss_pred ceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch
Confidence 6899999999999999999988 89999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHhhhcccCCCCceEEEEecCccHHH-HHHHHHHhCCCCeeccCCccccccccccccccCCCcchhhHHHHHHH
Q psy18034 79 KAKLFVHRVGRCARAGRSGVAYSLVSSDELCY-YLDLLLFLGRKPVLADDSMKGKIRHQDGMFGKIPQGLMEDQISEIMN 157 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (251)
++++|+||+||++|.+..|.++++++|.|..+ +..++.. ++++.... +.+..+.+....+..
T Consensus 395 dv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~----------------i~~~k~~~i~~~l~~ 457 (758)
T KOG0343|consen 395 DVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIK----------------IDPEKLTSIRNKLEA 457 (758)
T ss_pred hHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc-CCCHHhhc----------------cCHHHhhhHHHHHHH
Confidence 99999999999999999999999999998554 4444443 35444332 112223333445566
Q ss_pred HHHhhHhhHHHHHHhHHHHHHHHhcCCCCchhhhhhhhcccccc
Q psy18034 158 WVELDADMEGIQKTCNNAYKKYVKSRPGASVESVKKVKELELAT 201 (251)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~i~r~k~l~~~~ 201 (251)
++.++.+ +...+.+++.+|.|+.-....+.++.+..+++..
T Consensus 458 ll~~~~e---Lk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~a 498 (758)
T KOG0343|consen 458 LLAKDPE---LKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEA 498 (758)
T ss_pred HHhhCHH---HHHHHHHHHHHHHHHHHhhccchhhcchhccHHH
Confidence 6666655 4455678888998887766666677665555443
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=8.8e-28 Score=223.35 Aligned_cols=126 Identities=39% Similarity=0.545 Sum_probs=121.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+||||||+++||+|+|++++|||||+|.++
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~ 323 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDP 323 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
..|+||+||+||+|+.|.+++|+.+.|...+..++..++..+...+
T Consensus 324 ~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~ 369 (460)
T PRK11776 324 EVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEP 369 (460)
T ss_pred hHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999999999999999999998776544
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=9.8e-28 Score=222.82 Aligned_cols=125 Identities=39% Similarity=0.528 Sum_probs=120.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+..++.+++.|...|+.+..+||+|++.+|..++++|++|+++||||||+++||+|+|++++|||||+|.++
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~ 326 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVP 326 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeec
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLA 125 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~ 125 (251)
..|+||+||+||+|..|.+++|++.+|...+..++..++.+++..
T Consensus 327 ~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 327 EDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred HHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999998877433
No 17
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=1.9e-27 Score=227.59 Aligned_cols=129 Identities=28% Similarity=0.465 Sum_probs=123.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+.+++.|++.|...|+.+..+||+|++.+|..++++|++|+.+||||||++++|+|+|++++|||||+|.++
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~ 326 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDS 326 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccCCc
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADDSM 129 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~~~ 129 (251)
..|+||+|||||+|+.|.+++|+.+.|...+..++..++..++..+.+.
T Consensus 327 e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~ 375 (629)
T PRK11634 327 ESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN 375 (629)
T ss_pred HHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCc
Confidence 9999999999999999999999999999999999999999887766543
No 18
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=1.3e-27 Score=226.09 Aligned_cols=120 Identities=33% Similarity=0.589 Sum_probs=115.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+..|+.++..|+..|+.+..+||+|++.+|..++++|++|+.+||||||+++||+|+|+|++|||||+|.++
T Consensus 379 k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~ 458 (545)
T PTZ00110 379 KILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQI 458 (545)
T ss_pred eEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGR 120 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~ 120 (251)
..|+||+||+||+|+.|.+++|+++++.....++...+..
T Consensus 459 ~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 459 EDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred HHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888777554
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=2.5e-27 Score=225.17 Aligned_cols=126 Identities=34% Similarity=0.496 Sum_probs=121.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+||||||++++|||+|++++|||||+|+++
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~ 338 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDA 338 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
..|+||+||+||.|..|.+++|+++.+...+.+++.+++.++...+
T Consensus 339 ~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~ 384 (572)
T PRK04537 339 EDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEP 384 (572)
T ss_pred HHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccc
Confidence 9999999999999999999999999999999999999988775443
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.95 E-value=2.7e-27 Score=218.52 Aligned_cols=124 Identities=34% Similarity=0.546 Sum_probs=119.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+++++.+++.|+..|+.+..+||+|++.+|..+++.|++|+++||||||++++|+|+|++++|||||+|.+.
T Consensus 247 ~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~ 326 (434)
T PRK11192 247 RSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSA 326 (434)
T ss_pred eEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCee
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVL 124 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~ 124 (251)
..|+||+||+||+|..|.+++++...+...+..+++++..++..
T Consensus 327 ~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 327 DTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred HHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999988876643
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1e-26 Score=217.04 Aligned_cols=123 Identities=37% Similarity=0.560 Sum_probs=119.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+++.+++.+++.|...|+.+..+||+|++++|.++++.|++|++++|||||++++|+|+|++++||+||+|.++
T Consensus 337 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~ 416 (475)
T PRK01297 337 RVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDP 416 (475)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCe
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPV 123 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~ 123 (251)
..|+||+||+||.|+.|.+++|+..+|..++..++..++.++.
T Consensus 417 ~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 417 DDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred HHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999998874
No 22
>KOG0338|consensus
Probab=99.94 E-value=1.5e-26 Score=208.31 Aligned_cols=117 Identities=36% Similarity=0.578 Sum_probs=113.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++|||+.|+..|..+.-+|--.|+.+.-+||+++|.+|.+.++.|+++++++|||||+++||+||++|..||||++|.+.
T Consensus 428 ~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~ 507 (691)
T KOG0338|consen 428 RTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTI 507 (691)
T ss_pred ceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhH
Confidence 58999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHH
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLF 117 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~ 117 (251)
+.|+||+|||+|+|+.|.+++|+...+...++.+-..
T Consensus 508 e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 508 EHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999887654
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.94 E-value=9.9e-27 Score=219.10 Aligned_cols=120 Identities=24% Similarity=0.491 Sum_probs=113.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHh-CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGL-AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCK 79 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~-~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~ 79 (251)
++||||+|+..++.++..|.. .|+.+..+||+|++.+|..++++|++|+.+||||||+++||+|+|++++|||||+|.+
T Consensus 369 ~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s 448 (518)
T PLN00206 369 PAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNT 448 (518)
T ss_pred CEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCC
Confidence 589999999999999999975 5899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCC
Q psy18034 80 AKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGR 120 (251)
Q Consensus 80 ~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~ 120 (251)
+..|+||+||+||.|..|.+++|+++++...+.++...+..
T Consensus 449 ~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 449 IKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKS 489 (518)
T ss_pred HHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888776654
No 24
>KOG0336|consensus
Probab=99.94 E-value=3.4e-27 Score=207.92 Aligned_cols=120 Identities=33% Similarity=0.647 Sum_probs=114.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||..+..++.|+.-|.-.|+.+-++||+-+|.+|+..++.|+.|+++|||+||+++||+|+|+++||+|||+|.++
T Consensus 467 KvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nI 546 (629)
T KOG0336|consen 467 KVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNI 546 (629)
T ss_pred eEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGR 120 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~ 120 (251)
+.|+||+||+||+|+.|.+++|++-++.....++...|.+
T Consensus 547 eeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 547 EEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILER 586 (629)
T ss_pred HHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888877766544
No 25
>PTZ00424 helicase 45; Provisional
Probab=99.94 E-value=1.8e-26 Score=210.62 Aligned_cols=126 Identities=29% Similarity=0.553 Sum_probs=121.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+.+++.+++.|...++.+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||+||+|.+.
T Consensus 269 ~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~ 348 (401)
T PTZ00424 269 QAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASP 348 (401)
T ss_pred eEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
..|+||+||+||.|+.|.|++++++++...+..++..++..++..+
T Consensus 349 ~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 349 ENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred HHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999999999999999999999999988777655
No 26
>KOG0347|consensus
Probab=99.93 E-value=2e-26 Score=209.03 Aligned_cols=123 Identities=33% Similarity=0.457 Sum_probs=118.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++|||||+.+.+..|+-+|...+++...+|+.|.|.+|...+++|++....||||||||+||+|||+|.|||||.+|.+.
T Consensus 465 rTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrts 544 (731)
T KOG0347|consen 465 RTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTS 544 (731)
T ss_pred ceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCe
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPV 123 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~ 123 (251)
+.|+||.|||+|++..|..+.++.|.|...+..+...+.+...
T Consensus 545 eiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 545 EIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred ceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999988876543
No 27
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.4e-25 Score=209.13 Aligned_cols=115 Identities=24% Similarity=0.363 Sum_probs=110.5
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCChh
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAK 81 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~ 81 (251)
+||||+|+++++.+++.|+..|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++|||||+|.++.
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~ 308 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSME 308 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcccCCCCceEEEEecCccHHHHHHHHH
Q psy18034 82 LFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLL 116 (251)
Q Consensus 82 ~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~ 116 (251)
.|+||+||+||.|..|.+++++++.+...+..+..
T Consensus 309 ~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 309 SYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred HHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999998887766543
No 28
>KOG0335|consensus
Probab=99.93 E-value=8.3e-26 Score=204.78 Aligned_cols=119 Identities=35% Similarity=0.528 Sum_probs=112.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
+++|||.|+..++.|...|...++++..+||.-++.+|.+.++.|+.|+..+||||++++||+|+|+|++|||||+|.+.
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~ 418 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADI 418 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLG 119 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~ 119 (251)
..|+||+|||||.|+.|.+++|++.........+.+.+.
T Consensus 419 d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ 457 (482)
T KOG0335|consen 419 DDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILT 457 (482)
T ss_pred hhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHH
Confidence 999999999999999999999999776666666665543
No 29
>KOG0327|consensus
Probab=99.93 E-value=1.2e-25 Score=196.79 Aligned_cols=127 Identities=30% Similarity=0.545 Sum_probs=124.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
+.+|||||+..++.+...|...++.+.++||.|++.+|..++..|+.|..++||+||.++||+|+..++.|||||+|.+.
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~ 344 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARK 344 (397)
T ss_pred cceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~ 127 (251)
+.|+||+||+||.|++|.++.+++.++...+.+++++++.++.++|.
T Consensus 345 ~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 345 ENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred hhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 99999999999999999999999999999999999999999998884
No 30
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=5.9e-25 Score=210.51 Aligned_cols=114 Identities=20% Similarity=0.349 Sum_probs=108.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+++++.+++.|+..|+.+..+||+|++++|..+++.|+.|+.+|||||+++++|+|+|+|++|||||+|.+.
T Consensus 238 ~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~ 317 (607)
T PRK11057 238 SGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (607)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHH
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDL 114 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i 114 (251)
+.|+||+||+||.|..|.+++|+++.+...+..+
T Consensus 318 ~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 318 ESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred HHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 9999999999999999999999998887665543
No 31
>KOG0341|consensus
Probab=99.92 E-value=2.4e-25 Score=195.20 Aligned_cols=118 Identities=36% Similarity=0.636 Sum_probs=109.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
.++|||..+..++.++++|--.|+.++.+||+-+|++|...++.|+.|+.+||||||+++.|+|+|++.+|||||+|..+
T Consensus 423 pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eI 502 (610)
T KOG0341|consen 423 PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEI 502 (610)
T ss_pred ceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCc-cHHHHHHHHHHh
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSD-ELCYYLDLLLFL 118 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~i~~~l 118 (251)
+.|+||+||+||.|+.|.+.+|+++. +...+.++...+
T Consensus 503 ENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL 541 (610)
T KOG0341|consen 503 ENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLL 541 (610)
T ss_pred HHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHH
Confidence 99999999999999999999999864 445555554443
No 32
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.92 E-value=5.1e-25 Score=216.69 Aligned_cols=115 Identities=17% Similarity=0.320 Sum_probs=109.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||.|+..++.+++.|+..|+.+..+||+|++.+|..++++|+.|+++|||||+++++|||+|+|++|||||+|.++
T Consensus 682 sgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSi 761 (1195)
T PLN03137 682 CGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 761 (1195)
T ss_pred CceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHH
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLL 115 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~ 115 (251)
+.|+||+|||||.|..|.|++|++..+...+..+.
T Consensus 762 EsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 762 EGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred HHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999887766555443
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.92 E-value=1.1e-24 Score=212.34 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=114.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI 72 (251)
|+||||+|+..++.++..|+.. +..+..+||+|++++|..+.++|++|++++|||||++++|||+|++++||
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI 352 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVV 352 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEE
Confidence 6899999999999999998764 56788999999999999999999999999999999999999999999999
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEec--CccHHHHHHHHHHhCCCCeec
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVS--SDELCYYLDLLLFLGRKPVLA 125 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~--~~e~~~~~~i~~~l~~~~~~~ 125 (251)
|||+|.+..+|+||+||+||.|+.|.+++++. +.+..++..++.+++.+++..
T Consensus 353 ~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 353 IAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred EeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 99999999999999999999999999999986 456667777888888776543
No 34
>KOG0344|consensus
Probab=99.91 E-value=3.1e-24 Score=196.32 Aligned_cols=117 Identities=31% Similarity=0.524 Sum_probs=111.4
Q ss_pred EEEEcCcHHHHHHHHHHH-HhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 2 TVVFTATKYHVEYVHKIL-GLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L-~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||+.+.+.+.+|+..| .-.++.+.++||+.++.+|...+++||.|++++|||||+++||+|+.+++.|||||+|.+.
T Consensus 390 ~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~ 469 (593)
T KOG0344|consen 390 VLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSD 469 (593)
T ss_pred eEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchh
Confidence 689999999999999999 5668999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHh
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFL 118 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l 118 (251)
-+|+||+||+||+|+.|.||+|++..+.+++..+...+
T Consensus 470 ~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 470 LSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred HHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 99999999999999999999999999988887766543
No 35
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.91 E-value=1.3e-23 Score=207.28 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=112.0
Q ss_pred CEEEEcCcHHHHHHHHHHHH-hCCCcEEEEcCCCCHHHHHHHHHHHhcC--CceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILG-LAGISSTYIYSDLDPTARKINAAKFQTG--KIRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~-~~~~~~~~i~g~~~~~~r~~~~~~F~~g--~~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
|+||||+++.+++.+.+.|+ ..|+.+..+||+|++.+|.++++.|+++ ..+|||||+++++|+|++.+++|||||+|
T Consensus 495 KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP 574 (956)
T PRK04914 495 KVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLP 574 (956)
T ss_pred eEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCC
Confidence 68999999999999999994 5699999999999999999999999985 69999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
|||..|+||+||+||.|+++.+..++...+-.....+...+..++..++
T Consensus 575 ~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife 623 (956)
T PRK04914 575 FNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFE 623 (956)
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCcee
Confidence 9999999999999999999987777665555556667777777665444
No 36
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.90 E-value=1.6e-23 Score=200.33 Aligned_cols=114 Identities=25% Similarity=0.395 Sum_probs=108.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+..++.+++.|...|+.+..+||+|++++|..+++.|+.|+.+|||||+++++|+|+|++++||+||+|.+.
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHH
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDL 114 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i 114 (251)
+.|.||+||+||.|..|.+++++.+.+...+..+
T Consensus 306 ~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 306 ESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred HHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999988776655443
No 37
>KOG0350|consensus
Probab=99.90 E-value=1.1e-23 Score=189.56 Aligned_cols=120 Identities=33% Similarity=0.484 Sum_probs=112.2
Q ss_pred CEEEEcCcHHHHHHHHHHHH----hCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecC
Q psy18034 1 MTVVFTATKYHVEYVHKILG----LAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNF 76 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~----~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~ 76 (251)
++|+|+++...+..++..|+ ..++.+.++.|++....|...+++|+.|++++|||||+++||+|+-++++|||||+
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~ 510 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP 510 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC
Confidence 58999999999999999987 23677888999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCC
Q psy18034 77 PCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGR 120 (251)
Q Consensus 77 P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~ 120 (251)
|.+..+|+||+|||||+|+.|.|++++..++...+.++....+.
T Consensus 511 P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 511 PASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred CchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999999999999999988888776654
No 38
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=4.5e-22 Score=185.99 Aligned_cols=114 Identities=26% Similarity=0.415 Sum_probs=108.9
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCChh
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAK 81 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~ 81 (251)
.||||.|+..++.+++.|...|+.+..+||+|+.++|..+.++|..++..|+|||.++++|||-|+|++|||||+|.|.+
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcccCCCCceEEEEecCccHHHHHHHH
Q psy18034 82 LFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLL 115 (251)
Q Consensus 82 ~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~ 115 (251)
.|.|-+||+||.|.+..|++|+.+.+......+.
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i 346 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLI 346 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHHH
Confidence 9999999999999999999999998866554443
No 39
>KOG0346|consensus
Probab=99.88 E-value=1.1e-22 Score=180.78 Aligned_cols=120 Identities=30% Similarity=0.434 Sum_probs=112.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc----------------------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV---------------------- 58 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~---------------------- 58 (251)
|+|||+||.+.+..|.-.|+..|++.+.+.|.||...|..++++|..|..+++||||.
T Consensus 270 KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kn 349 (569)
T KOG0346|consen 270 KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKN 349 (569)
T ss_pred ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCC
Confidence 6899999999999999999999999999999999999999999999999999999992
Q ss_pred -------------cccccccccccEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCC
Q psy18034 59 -------------AARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGR 120 (251)
Q Consensus 59 -------------~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~ 120 (251)
.+||||+.+|.+|+|||+|.++..|+||+|||||+|++|.+++|+.+.|..-...++..+.-
T Consensus 350 dkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 350 DKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred ccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhh
Confidence 34999999999999999999999999999999999999999999999988866777766544
No 40
>KOG0349|consensus
Probab=99.88 E-value=1.1e-21 Score=174.40 Aligned_cols=133 Identities=32% Similarity=0.490 Sum_probs=122.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC---CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG---ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~---~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
|+||||.|+..|+.|.+.++..| +.|.++||+..+.+|.+.++.|+.+.++.|||||+++||+|+..+..+||..+|
T Consensus 507 kaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlp 586 (725)
T KOG0349|consen 507 KAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLP 586 (725)
T ss_pred ceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecC
Confidence 68999999999999999999884 689999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCceEEEEecC--------------------------------ccHHHHHHHHHHhCCCCeec
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVAYSLVSS--------------------------------DELCYYLDLLLFLGRKPVLA 125 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~i~l~~~--------------------------------~e~~~~~~i~~~l~~~~~~~ 125 (251)
.+...|+||+||+||+.+.|.+|+++.. +|-..+.+++..++..++..
T Consensus 587 d~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv 666 (725)
T KOG0349|consen 587 DDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQV 666 (725)
T ss_pred cccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeee
Confidence 9999999999999999999999999852 45667889999999999888
Q ss_pred cCCccccc
Q psy18034 126 DDSMKGKI 133 (251)
Q Consensus 126 ~~~~~~~~ 133 (251)
++.+...+
T Consensus 667 ~~~~~vpv 674 (725)
T KOG0349|consen 667 DKTMDVPV 674 (725)
T ss_pred CCCCCCcc
Confidence 76655443
No 41
>KOG0339|consensus
Probab=99.86 E-value=7.7e-22 Score=178.02 Aligned_cols=118 Identities=37% Similarity=0.584 Sum_probs=112.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++|||+.-+..++.++..|...|+.|..+||+|+|.+|.+++.+|+.+...|||+||+++||+|+|++..|||||+-.++
T Consensus 470 kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardI 549 (731)
T KOG0339|consen 470 KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDI 549 (731)
T ss_pred cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHh
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFL 118 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l 118 (251)
+.|.||+||+||+|.+|.+++++++.+..+.-.|...|
T Consensus 550 dththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnL 587 (731)
T KOG0339|consen 550 DTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNL 587 (731)
T ss_pred HHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHH
Confidence 99999999999999999999999998887766665544
No 42
>KOG4284|consensus
Probab=99.86 E-value=9.4e-22 Score=181.59 Aligned_cols=108 Identities=28% Similarity=0.511 Sum_probs=104.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+....|+-++.+|...|++|.++.|.|.|.+|..+++++++-.++|||+||+.+||||-|+++.|||.|.|.+-
T Consensus 274 QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~ 353 (980)
T KOG4284|consen 274 QALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADE 353 (980)
T ss_pred HHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccH
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDEL 108 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 108 (251)
.+|.||+||+||+|..|.+++++...+.
T Consensus 354 eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 354 ETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999876543
No 43
>KOG0334|consensus
Probab=99.86 E-value=1.7e-21 Score=188.16 Aligned_cols=118 Identities=35% Similarity=0.567 Sum_probs=115.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||..+..|+.+.+.|.+.|+.|..+||+-++.+|..+++.|+++.+++||||++++||+|++.+..|||||+|...
T Consensus 615 ~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~ 694 (997)
T KOG0334|consen 615 KTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHY 694 (997)
T ss_pred CEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHh
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFL 118 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l 118 (251)
..|+||+|||||+|++|.|++|+.+++..+.-+|..++
T Consensus 695 edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 695 EDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred HHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999998888
No 44
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.85 E-value=8.4e-21 Score=171.77 Aligned_cols=105 Identities=30% Similarity=0.418 Sum_probs=97.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEE-EEc--------CCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISST-YIY--------SDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAV 71 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~-~i~--------g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~V 71 (251)
++|||++++++++.+...|...|..+. .+- .||+|.++.+++++|++|.+++||||+++.+|+|+|+++.|
T Consensus 368 RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlV 447 (542)
T COG1111 368 RVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLV 447 (542)
T ss_pred eEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEE
Confidence 589999999999999999999987774 333 37999999999999999999999999999999999999999
Q ss_pred EEecCCCChhhHHHHhhhcccCCCCceEEEEecCc
Q psy18034 72 INYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSD 106 (251)
Q Consensus 72 I~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 106 (251)
|.|++-.|+..++||.|||||. +.|.++++++.+
T Consensus 448 ifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 448 IFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred EEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999999999995 899999999865
No 45
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.85 E-value=4.5e-21 Score=135.58 Aligned_cols=78 Identities=37% Similarity=0.658 Sum_probs=75.6
Q ss_pred HHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCChhhHHHHhhhcccCC
Q psy18034 17 KILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAG 94 (251)
Q Consensus 17 ~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~g 94 (251)
+.|+..|+.+..+||+|++.+|..+++.|+.+...|||||+++++|+|+|.+++||++++||++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999986
No 46
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1e-20 Score=183.05 Aligned_cols=105 Identities=27% Similarity=0.315 Sum_probs=98.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccccccccc---cccc-----EEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDI---PSLD-----AVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi---~~v~-----~VI 72 (251)
++||||+|+..++.++..|...|+++..+||.+++.++..+..+++.| +|+||||+++||+|+ |.|. +||
T Consensus 430 pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI 507 (790)
T PRK09200 430 PVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVI 507 (790)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEE
Confidence 489999999999999999999999999999999998888888887766 799999999999999 7998 999
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
|||+|.+.+.|.||+|||||.|.+|.+++|++.+|
T Consensus 508 ~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 508 GTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred eccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 99999999999999999999999999999998755
No 47
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=4.2e-20 Score=178.05 Aligned_cols=127 Identities=23% Similarity=0.294 Sum_probs=116.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecC----
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNF---- 76 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~---- 76 (251)
++||||+|+..++.+++.|...|+++..+||+|++.+|..+++.|+.|++.|||||+++++|+|+|++++||++|.
T Consensus 448 ~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG 527 (652)
T PRK05298 448 RVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEG 527 (652)
T ss_pred EEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred -CCChhhHHHHhhhcccCCCCceEEEEecC---------ccHHHHHHHHHHhCCCCeeccCC
Q psy18034 77 -PCKAKLFVHRVGRCARAGRSGVAYSLVSS---------DELCYYLDLLLFLGRKPVLADDS 128 (251)
Q Consensus 77 -P~~~~~y~qr~GR~gR~g~~g~~i~l~~~---------~e~~~~~~i~~~l~~~~~~~~~~ 128 (251)
|.+...|+||+||+||. ..|.++++++. .|....++++..++.+....|..
T Consensus 528 ~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 588 (652)
T PRK05298 528 FLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKT 588 (652)
T ss_pred cCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChh
Confidence 78999999999999995 78999999984 56777788888888877766643
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.84 E-value=2.6e-20 Score=184.83 Aligned_cols=103 Identities=25% Similarity=0.296 Sum_probs=93.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEe
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINY 74 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~ 74 (251)
++||||+|+..|+.++..|+.. +..+.++||+|++++|..+.+.|++|+.++||||+++++|+|+|++++||+|
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~ 365 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLL 365 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEe
Confidence 5899999999999999999873 4679999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHhhhcccC-CCCceEEEEe
Q psy18034 75 NFPCKAKLFVHRVGRCARA-GRSGVAYSLV 103 (251)
Q Consensus 75 d~P~~~~~y~qr~GR~gR~-g~~g~~i~l~ 103 (251)
+.|.++..|+||+||+||. |..+.++.+.
T Consensus 366 ~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 366 GSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999999999986 4334444443
No 49
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.5e-20 Score=178.64 Aligned_cols=105 Identities=25% Similarity=0.302 Sum_probs=94.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc---ccc-----EEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIP---SLD-----AVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~---~v~-----~VI 72 (251)
.+||||+|+..++.++..|...|+++..+||.++ +|+..+..|+.++..|+||||+++||+||+ +|. +||
T Consensus 475 pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI 552 (656)
T PRK12898 475 PVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVI 552 (656)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEE
Confidence 3799999999999999999999999999999865 455556666666778999999999999999 666 999
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
|||+|.+...|.||+|||||.|.+|.+++|++.+|
T Consensus 553 ~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 553 LTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 99999999999999999999999999999999755
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.83 E-value=2.4e-20 Score=184.49 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=105.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~ 78 (251)
|++|||+++++++.+++.|+.. ++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~ 741 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK 741 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC
Confidence 5899999999999999999985 78999999999999999999999999999999999999999999999999999874
Q ss_pred -ChhhHHHHhhhcccCCCCceEEEEecCc------cHHHHHHHHHH
Q psy18034 79 -KAKLFVHRVGRCARAGRSGVAYSLVSSD------ELCYYLDLLLF 117 (251)
Q Consensus 79 -~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~i~~~ 117 (251)
+...|.||+||+||.|+.|.|++++.+. ....+..++.+
T Consensus 742 ~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 742 FGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 6778999999999999999999998643 34455555554
No 51
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.83 E-value=2.8e-20 Score=142.96 Aligned_cols=101 Identities=35% Similarity=0.601 Sum_probs=97.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||++...++.+++.|...+..+..+||++++.+|..+++.|+++...+|++|.++++|+|+|.+++||.++.||+.
T Consensus 30 ~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~ 109 (131)
T cd00079 30 KVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSP 109 (131)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCH
Confidence 58999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEE
Q psy18034 81 KLFVHRVGRCARAGRSGVAYS 101 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~ 101 (251)
..+.|++||++|.|+.|.++.
T Consensus 110 ~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 110 SSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred HHheecccccccCCCCceEEe
Confidence 999999999999999888765
No 52
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.83 E-value=6.3e-20 Score=176.24 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=109.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEec-----
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYN----- 75 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d----- 75 (251)
++||||+|+..++.+++.|...|+.+..+||+|++.+|.++++.|+.|++.|||||+++++|+|+|++++|+++|
T Consensus 444 ~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG 523 (655)
T TIGR00631 444 RVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEG 523 (655)
T ss_pred EEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCccccc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHH
Q psy18034 76 FPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLF 117 (251)
Q Consensus 76 ~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~ 117 (251)
+|.+..+|+||+||+||. ..|.+++++...+......+...
T Consensus 524 ~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 524 FLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 899999999999999997 68999999998777776666655
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.82 E-value=5.6e-20 Score=176.48 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=97.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHH-hcCCceEEEeccccccccccccccEEEEec--
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKF-QTGKIRVLVVTDVAARGIDIPSLDAVINYN-- 75 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F-~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d-- 75 (251)
++||||+++..++.+++.|+.. ++.+..+||+|++. ++.+++| ++|+.+||||||+++||+|+|+|++||++|
T Consensus 397 ~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~ 474 (675)
T PHA02653 397 SGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRV 474 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCc
Confidence 4899999999999999999987 78999999999975 5667887 789999999999999999999999999999
Q ss_pred -CCC---------ChhhHHHHhhhcccCCCCceEEEEecCccHHHHHH
Q psy18034 76 -FPC---------KAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLD 113 (251)
Q Consensus 76 -~P~---------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~ 113 (251)
.|. |..+|+||+||+||. ++|.|+.|+++++...+..
T Consensus 475 k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~r 521 (675)
T PHA02653 475 YVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKR 521 (675)
T ss_pred cCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHH
Confidence 565 788999999999999 7999999999876543333
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.81 E-value=8.5e-20 Score=184.02 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=100.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC-
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP- 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P- 77 (251)
|++|||+++..++.+++.|... +..+.++||+|++.+|.+++.+|++|+.+|||||+++++|+|+|++++||..+.+
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~ 890 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCC
Confidence 5899999999999999999987 7899999999999999999999999999999999999999999999999944332
Q ss_pred CChhhHHHHhhhcccCCCCceEEEEecCc------cHHHHHHHHHH
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVAYSLVSSD------ELCYYLDLLLF 117 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~i~~~ 117 (251)
.+...|+||+||+||.|+.|.|++++.+. ....+..++.+
T Consensus 891 fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred CCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 34557999999999999999999987542 23444555544
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.81 E-value=1.6e-19 Score=183.85 Aligned_cols=126 Identities=18% Similarity=0.204 Sum_probs=101.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC---------------------------------CcEEEEcCCCCHHHHHHHHHHHhc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG---------------------------------ISSTYIYSDLDPTARKINAAKFQT 47 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~---------------------------------~~~~~i~g~~~~~~r~~~~~~F~~ 47 (251)
++||||||+..|+.++..|+... ..+.++||+|++++|..+.+.|++
T Consensus 246 stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~ 325 (1490)
T PRK09751 246 STIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKS 325 (1490)
T ss_pred CEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHh
Confidence 58999999999999999997641 125688999999999999999999
Q ss_pred CCceEEEeccccccccccccccEEEEecCCCChhhHHHHhhhcccC-CCCceEEEEecCccHHHH---HHHHHHhCCCCe
Q psy18034 48 GKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARA-GRSGVAYSLVSSDELCYY---LDLLLFLGRKPV 123 (251)
Q Consensus 48 g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~-g~~g~~i~l~~~~e~~~~---~~i~~~l~~~~~ 123 (251)
|++++||||+.+++|||++++++||||+.|.+..+|+||+||+||. |..+.++.+.. +....+ .-++.++...++
T Consensus 326 G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~-~r~dlle~~~~ve~~l~g~iE 404 (1490)
T PRK09751 326 GELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR-TRRDLVDSAVIVECMFAGRLE 404 (1490)
T ss_pred CCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC-cHHHHHhhHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999996 33344443322 222222 236667777766
Q ss_pred eccC
Q psy18034 124 LADD 127 (251)
Q Consensus 124 ~~~~ 127 (251)
....
T Consensus 405 ~~~~ 408 (1490)
T PRK09751 405 NLTP 408 (1490)
T ss_pred ccCC
Confidence 5543
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.80 E-value=4.6e-19 Score=171.89 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=94.6
Q ss_pred CEEEEcCc--------HHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccE
Q psy18034 1 MTVVFTAT--------KYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t--------~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~ 70 (251)
|++|||++ ...++.+++.|... ++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~ 552 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATV 552 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcE
Confidence 58999985 44567778888766 578999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-ChhhHHHHhhhcccCCCCceEEEEec
Q psy18034 71 VINYNFPC-KAKLFVHRVGRCARAGRSGVAYSLVS 104 (251)
Q Consensus 71 VI~~d~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~ 104 (251)
||++|.|. ....|.||+||+||.|..|.|+++..
T Consensus 553 VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 553 MVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999996 57888999999999999999999995
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.80 E-value=2.6e-19 Score=161.27 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=88.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCC--cEEEEcCCCCHHHHHH----HHHHHhcCCceEEEeccccccccccccccEEEEe
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGI--SSTYIYSDLDPTARKI----NAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINY 74 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~--~~~~i~g~~~~~~r~~----~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~ 74 (251)
++||||+|+++++.+++.|+..+. .+..+||+|++.+|.. +++.|++|+..+||||+++++|+|++ +++||++
T Consensus 224 ~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~ 302 (358)
T TIGR01587 224 KIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITE 302 (358)
T ss_pred eEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEc
Confidence 589999999999999999988765 4899999999999976 48999999999999999999999996 8899999
Q ss_pred cCCCChhhHHHHhhhcccCCCCc----eEEEEec
Q psy18034 75 NFPCKAKLFVHRVGRCARAGRSG----VAYSLVS 104 (251)
Q Consensus 75 d~P~~~~~y~qr~GR~gR~g~~g----~~i~l~~ 104 (251)
+.| +++|+||+||+||.|+.+ ..+++..
T Consensus 303 ~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 303 LAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred CCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 877 789999999999998643 4555543
No 58
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.80 E-value=2.5e-19 Score=172.27 Aligned_cols=104 Identities=24% Similarity=0.269 Sum_probs=96.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc---------cccEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIP---------SLDAV 71 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~---------~v~~V 71 (251)
++||||+|+..++.++..|...|+++..+||.+++.++..+.++|+.| .|+||||+++||+|+| ++.+|
T Consensus 426 pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vI 503 (762)
T TIGR03714 426 PVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVI 503 (762)
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEE
Confidence 489999999999999999999999999999999999988877777666 7999999999999999 99999
Q ss_pred EEecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 72 INYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 72 I~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
++|++|..... .||+|||||.|.+|.+++|++.+|
T Consensus 504 it~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 504 GTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred EecCCCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 99999988766 999999999999999999998765
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.80 E-value=6.3e-19 Score=169.73 Aligned_cols=103 Identities=16% Similarity=0.207 Sum_probs=94.1
Q ss_pred CEEEEcCcH--------HHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccE
Q psy18034 1 MTVVFTATK--------YHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~--------~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~ 70 (251)
+++|||++. ..++.+++.|... ++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++
T Consensus 450 q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~ 529 (630)
T TIGR00643 450 QAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATV 529 (630)
T ss_pred cEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcE
Confidence 578999865 4567778888764 778999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-ChhhHHHHhhhcccCCCCceEEEEe
Q psy18034 71 VINYNFPC-KAKLFVHRVGRCARAGRSGVAYSLV 103 (251)
Q Consensus 71 VI~~d~P~-~~~~y~qr~GR~gR~g~~g~~i~l~ 103 (251)
||++|.|. +...|.||+||+||.|+.|.|+++.
T Consensus 530 VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 530 MVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred EEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999986 6788899999999999999999998
No 60
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.80 E-value=2e-19 Score=176.22 Aligned_cols=108 Identities=21% Similarity=0.329 Sum_probs=98.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHh---CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGL---AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~---~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
++||||+++..++.+++.|+. .++.+..+||+|++++|..+++.|++|+.+||||||++++|||+|+|++|||+++|
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~ 290 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLA 290 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcc
Confidence 489999999999999999987 37889999999999999999999999999999999999999999999999999998
Q ss_pred CC------------------hhhHHHHhhhcccCCCCceEEEEecCccHH
Q psy18034 78 CK------------------AKLFVHRVGRCARAGRSGVAYSLVSSDELC 109 (251)
Q Consensus 78 ~~------------------~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 109 (251)
.. ..+|.||+||+||. ++|.||.+++..+..
T Consensus 291 r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 291 RVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred cccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 53 34589999999998 799999999876543
No 61
>PRK13766 Hef nuclease; Provisional
Probab=99.80 E-value=4.5e-19 Score=174.60 Aligned_cols=104 Identities=30% Similarity=0.417 Sum_probs=98.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCC--------CCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSD--------LDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~--------~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI 72 (251)
|+||||++++++++|++.|...|+.+..+||. |++.+|..++++|++|+.++||+|+++++|+|+|.+++||
T Consensus 367 kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI 446 (773)
T PRK13766 367 RIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVI 446 (773)
T ss_pred eEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEE
Confidence 68999999999999999999999999999986 9999999999999999999999999999999999999999
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEecC
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSS 105 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 105 (251)
+||+||++..|+||+||+||.|. |.++.++..
T Consensus 447 ~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~ 478 (773)
T PRK13766 447 FYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAK 478 (773)
T ss_pred EeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeC
Confidence 99999999999999999999864 888888864
No 62
>PRK02362 ski2-like helicase; Provisional
Probab=99.78 E-value=1.6e-18 Score=169.82 Aligned_cols=106 Identities=24% Similarity=0.358 Sum_probs=96.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC------------------------------------CCcEEEEcCCCCHHHHHHHHHH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA------------------------------------GISSTYIYSDLDPTARKINAAK 44 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~------------------------------------~~~~~~i~g~~~~~~r~~~~~~ 44 (251)
++||||+|+..++.++..|... ..++.++||+|++.+|..+.+.
T Consensus 245 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~ 324 (737)
T PRK02362 245 QCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDA 324 (737)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHH
Confidence 6899999999999998887643 1368899999999999999999
Q ss_pred HhcCCceEEEeccccccccccccccEEEE----ec-----CCCChhhHHHHhhhcccCCCC--ceEEEEecCc
Q psy18034 45 FQTGKIRVLVVTDVAARGIDIPSLDAVIN----YN-----FPCKAKLFVHRVGRCARAGRS--GVAYSLVSSD 106 (251)
Q Consensus 45 F~~g~~~iLv~Td~~~~Gldi~~v~~VI~----~d-----~P~~~~~y~qr~GR~gR~g~~--g~~i~l~~~~ 106 (251)
|++|.++|||||+.+++|+|+|.+++||+ || .|.++..|.||+|||||.|.. |.+++++...
T Consensus 325 Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 325 FRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 99999999999999999999999999997 77 689999999999999999875 8899988664
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.78 E-value=5.3e-19 Score=173.42 Aligned_cols=107 Identities=17% Similarity=0.300 Sum_probs=98.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHh---CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGL---AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~---~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
++||||+++..++.+++.|+. .++.+..+||+|++.+|..+++.|++|+.+||||||++++|+|+|+|++|||+++|
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~ 293 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLE 293 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCc
Confidence 489999999999999999987 57889999999999999999999999999999999999999999999999998877
Q ss_pred CC------------------hhhHHHHhhhcccCCCCceEEEEecCccH
Q psy18034 78 CK------------------AKLFVHRVGRCARAGRSGVAYSLVSSDEL 108 (251)
Q Consensus 78 ~~------------------~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 108 (251)
.. ..+|.||+||+||. ++|.||.+++..+.
T Consensus 294 r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 294 RVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred ccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 53 35799999999998 69999999986543
No 64
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.77 E-value=2.2e-18 Score=165.01 Aligned_cols=105 Identities=22% Similarity=0.208 Sum_probs=100.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccccccccccc-------ccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPS-------LDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~-------v~~VI~ 73 (251)
.+||||+|...++.++..|...|+++..+||. +.+|+..+.+|+.+...|+||||+++||+||+. .-+||+
T Consensus 407 pvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~ 484 (745)
T TIGR00963 407 PVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIG 484 (745)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEe
Confidence 37999999999999999999999999999998 889999999999999999999999999999998 459999
Q ss_pred ecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 74 YNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 74 ~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
+++|.|...|.||.||+||.|.+|.+..+++.++
T Consensus 485 t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 485 TERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred cCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 9999999999999999999999999999998765
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.76 E-value=3.1e-18 Score=166.30 Aligned_cols=100 Identities=24% Similarity=0.292 Sum_probs=88.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHH-----HHHHHHhc----CC-------ceEEEeccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARK-----INAAKFQT----GK-------IRVLVVTDVAARGID 64 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~-----~~~~~F~~----g~-------~~iLv~Td~~~~Gld 64 (251)
++||||||++.++.+++.|+..++ ..+||+|++.+|. .++++|+. |+ ..|||||+++++|+|
T Consensus 274 ~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLD 351 (844)
T TIGR02621 274 AILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVN 351 (844)
T ss_pred cEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhccc
Confidence 589999999999999999998886 8999999999999 78999987 44 689999999999999
Q ss_pred cccccEEEEecCCCChhhHHHHhhhcccCCCC-ceEEEEecC
Q psy18034 65 IPSLDAVINYNFPCKAKLFVHRVGRCARAGRS-GVAYSLVSS 105 (251)
Q Consensus 65 i~~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~-g~~i~l~~~ 105 (251)
++. ++||++..| .+.|+||+||+||.|+. +.+++++..
T Consensus 352 Id~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 352 ISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred CCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 986 899998877 58999999999999986 444666643
No 66
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.75 E-value=5.7e-18 Score=119.50 Aligned_cols=81 Identities=40% Similarity=0.680 Sum_probs=77.6
Q ss_pred HHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCChhhHHHHhhhcccC
Q psy18034 14 YVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARA 93 (251)
Q Consensus 14 ~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~ 93 (251)
.+++.|+..++.+..+||+|++.+|..+++.|+.+...+|++|+++++|+|+|.+++||.+++|+++..|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy18034 94 G 94 (251)
Q Consensus 94 g 94 (251)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.75 E-value=7.9e-18 Score=158.20 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=92.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEec-cccccccccccccEEEEecCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVT-DVAARGIDIPSLDAVINYNFPCK 79 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~T-d~~~~Gldi~~v~~VI~~d~P~~ 79 (251)
+++|||.+.++++.+++.|+..|.++..+||+|++++|..+++.|+.|+..+|||| +++++|+|+|++++||++++|.+
T Consensus 346 ~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s 425 (501)
T PHA02558 346 NTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKS 425 (501)
T ss_pred CEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcc
Confidence 47899999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred hhhHHHHhhhcccCCCCceE
Q psy18034 80 AKLFVHRVGRCARAGRSGVA 99 (251)
Q Consensus 80 ~~~y~qr~GR~gR~g~~g~~ 99 (251)
...|+||+||++|.+..+..
T Consensus 426 ~~~~~QriGR~~R~~~~K~~ 445 (501)
T PHA02558 426 KIIVLQSIGRVLRKHGSKSI 445 (501)
T ss_pred hhhhhhhhhccccCCCCCce
Confidence 99999999999998765433
No 68
>KOG0354|consensus
Probab=99.74 E-value=1.3e-17 Score=158.25 Aligned_cols=111 Identities=30% Similarity=0.428 Sum_probs=96.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC---CCcEEEEcC--------CCCHHHHHHHHHHHhcCCceEEEecccccccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA---GISSTYIYS--------DLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~---~~~~~~i~g--------~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~ 69 (251)
++||||.++..|+.|..+|... |+....+-| +|++.++.+++++|++|++++||||+++++|+|++.|+
T Consensus 415 R~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~ 494 (746)
T KOG0354|consen 415 RTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECN 494 (746)
T ss_pred cEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCccccc
Confidence 6899999999999999999832 445555544 79999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHH
Q psy18034 70 AVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLD 113 (251)
Q Consensus 70 ~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~ 113 (251)
.||-||.-.++...+||.|| ||+ +.|.++++.+..+...++.
T Consensus 495 lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~~E~ 536 (746)
T KOG0354|consen 495 LVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIEFER 536 (746)
T ss_pred EEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHHHHH
Confidence 99999999999999999999 996 4688888887655544443
No 69
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=9.6e-18 Score=161.82 Aligned_cols=105 Identities=25% Similarity=0.275 Sum_probs=97.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc---ccc-----EEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIP---SLD-----AVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~---~v~-----~VI 72 (251)
.+||||+|+..++.++..|...|+++..+||.+.+.++..+.++++.|. |+|||++++||+||+ .|. +||
T Consensus 442 pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI 519 (796)
T PRK12906 442 PVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVI 519 (796)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEE
Confidence 4799999999999999999999999999999999888887777777776 999999999999994 888 999
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
+++.|.+.+.|.|+.||+||.|.+|.+..+++.++
T Consensus 520 ~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 520 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred eeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 99999999999999999999999999999998764
No 70
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=2.4e-17 Score=158.44 Aligned_cols=104 Identities=26% Similarity=0.406 Sum_probs=93.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC-CceEEEeccccccccccccccEEEEecCCC-
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG-KIRVLVVTDVAARGIDIPSLDAVINYNFPC- 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g-~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~- 78 (251)
|+||||.+..+++.++..| + +..+||++++.+|..++++|+.| .+++||+|+++++|+|+|++++||+++.|.
T Consensus 498 kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~g 572 (732)
T TIGR00603 498 KIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYG 572 (732)
T ss_pred eEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCC
Confidence 6899999999999998887 2 56799999999999999999975 889999999999999999999999999984
Q ss_pred ChhhHHHHhhhcccCCCCceE-------EEEecCccHH
Q psy18034 79 KAKLFVHRVGRCARAGRSGVA-------YSLVSSDELC 109 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~g~~-------i~l~~~~e~~ 109 (251)
|...|+||+||++|.+..|.+ |+|++.+...
T Consensus 573 S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 573 SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred CHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 999999999999999876654 8898875433
No 71
>PRK00254 ski2-like helicase; Provisional
Probab=99.73 E-value=2.9e-17 Score=160.52 Aligned_cols=107 Identities=21% Similarity=0.329 Sum_probs=92.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC---------------------------------CCcEEEEcCCCCHHHHHHHHHHHhc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA---------------------------------GISSTYIYSDLDPTARKINAAKFQT 47 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~---------------------------------~~~~~~i~g~~~~~~r~~~~~~F~~ 47 (251)
++||||+|+..++.++..|... ..++.++||+|++++|..+.+.|++
T Consensus 240 ~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~ 319 (720)
T PRK00254 240 GALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFRE 319 (720)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHC
Confidence 5899999999998877666321 2358999999999999999999999
Q ss_pred CCceEEEeccccccccccccccEEEE-------ecCCC-ChhhHHHHhhhcccCC--CCceEEEEecCcc
Q psy18034 48 GKIRVLVVTDVAARGIDIPSLDAVIN-------YNFPC-KAKLFVHRVGRCARAG--RSGVAYSLVSSDE 107 (251)
Q Consensus 48 g~~~iLv~Td~~~~Gldi~~v~~VI~-------~d~P~-~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e 107 (251)
|.++|||||+.+++|+|+|.+++||. ++.|. +...|.||+||+||.| ..|.+++++...+
T Consensus 320 G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 320 GLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999999999994 56554 4678999999999975 5699999987655
No 72
>KOG0351|consensus
Probab=99.72 E-value=1.5e-17 Score=163.41 Aligned_cols=114 Identities=25% Similarity=0.405 Sum_probs=109.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCChh
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAK 81 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~ 81 (251)
+||||.++..|+.++..|+..|..+..+|++|++.+|..+..+|..++++|+|||=++++|||.|+|+.||||.+|.+.+
T Consensus 488 ~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E 567 (941)
T KOG0351|consen 488 GIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFE 567 (941)
T ss_pred eEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcccCCCCceEEEEecCccHHHHHHHH
Q psy18034 82 LFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLL 115 (251)
Q Consensus 82 ~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~ 115 (251)
.|.|-+||+||.|....|++|+...+...+..+.
T Consensus 568 ~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 568 GYYQEAGRAGRDGLPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred HHHHhccccCcCCCcceeEEecchhHHHHHHHHH
Confidence 9999999999999999999999988777665543
No 73
>PRK01172 ski2-like helicase; Provisional
Probab=99.70 E-value=9.9e-17 Score=155.84 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=89.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-------------------------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEe
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-------------------------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVV 55 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-------------------------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~ 55 (251)
++||||+|+..++.++..|... ..++.++||+|++++|..+.+.|++|.++||||
T Consensus 238 ~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLva 317 (674)
T PRK01172 238 QVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVA 317 (674)
T ss_pred cEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 5899999999999999888653 124788999999999999999999999999999
Q ss_pred ccccccccccccccEEEEecC---------CCChhhHHHHhhhcccCCC--CceEEEEecCcc
Q psy18034 56 TDVAARGIDIPSLDAVINYNF---------PCKAKLFVHRVGRCARAGR--SGVAYSLVSSDE 107 (251)
Q Consensus 56 Td~~~~Gldi~~v~~VI~~d~---------P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~e 107 (251)
|+++++|+|+|...+|| +|. |.++..|.||+|||||.|. .|.++.++...+
T Consensus 318 T~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 318 TPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred cchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 99999999999875554 443 5688899999999999985 577777765443
No 74
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=4.5e-17 Score=158.68 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=98.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc---ccc-----EEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIP---SLD-----AVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~---~v~-----~VI 72 (251)
.+||||+|+..++.|+..|...|+++..+|+ .+.+|+..+.+|+.+...|+|||++|+||+||+ .|. +||
T Consensus 600 pVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VI 677 (1025)
T PRK12900 600 PVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFIL 677 (1025)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceee
Confidence 4899999999999999999999999999997 688999999999999999999999999999999 554 459
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEecCccH
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDEL 108 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 108 (251)
+++.|.+...|.||.|||||.|.+|.++.|++.++.
T Consensus 678 gterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 678 GSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999999999999999999999999999999987653
No 75
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.70 E-value=3.9e-17 Score=164.25 Aligned_cols=105 Identities=20% Similarity=0.367 Sum_probs=93.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc---EEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEec--
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS---STYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYN-- 75 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~---~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d-- 75 (251)
++||||+++..++.+++.|+..+++ +..+||+|++.+|..+++. .|..+||||||++++|+|+|+|++|||++
T Consensus 288 dILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~ 365 (1294)
T PRK11131 288 DILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTA 365 (1294)
T ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCc
Confidence 4899999999999999999988765 6789999999999999886 47889999999999999999999999986
Q ss_pred -------------CC---CChhhHHHHhhhcccCCCCceEEEEecCccH
Q psy18034 76 -------------FP---CKAKLFVHRVGRCARAGRSGVAYSLVSSDEL 108 (251)
Q Consensus 76 -------------~P---~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 108 (251)
+| .|..+|.||+|||||. ++|.||.+++..+.
T Consensus 366 k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 366 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred cccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 34 4557899999999998 69999999997553
No 76
>KOG0352|consensus
Probab=99.67 E-value=1.9e-16 Score=141.04 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=105.7
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCChh
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAK 81 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~ 81 (251)
.||||.|++.|+.++-.|...|+++..+|.++...+|.++.++|.+++..|+++|..+++|+|-|+|+.|||+|+|.|..
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~A 337 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLA 337 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcccCCCCceEEEEecCccHHHHH
Q psy18034 82 LFVHRVGRCARAGRSGVAYSLVSSDELCYYL 112 (251)
Q Consensus 82 ~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~ 112 (251)
.|.|-.||+||.|...+|-+.++.++...+.
T Consensus 338 gYYQESGRAGRDGk~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 338 GYYQESGRAGRDGKRSYCRLYYSRQDKNALN 368 (641)
T ss_pred HHHHhccccccCCCccceeeeecccchHHHH
Confidence 9999999999999999999998877655443
No 77
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.65 E-value=2.2e-15 Score=145.90 Aligned_cols=105 Identities=24% Similarity=0.326 Sum_probs=97.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC-CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG-ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCK 79 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~-~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~ 79 (251)
.++||+||+..++.++..|+..+ ..+..+||+++.+.|..+-++|++|+.+++|||.-++.|||+.+++.||+|..|.+
T Consensus 255 ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~s 334 (814)
T COG1201 255 TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKS 334 (814)
T ss_pred cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHH
Confidence 48999999999999999999986 88999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhccc-CCCCceEEEEecC
Q psy18034 80 AKLFVHRVGRCAR-AGRSGVAYSLVSS 105 (251)
Q Consensus 80 ~~~y~qr~GR~gR-~g~~g~~i~l~~~ 105 (251)
...++||+||+|+ .|....++.+...
T Consensus 335 V~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 335 VNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999996 4655677666655
No 78
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.65 E-value=4.9e-16 Score=156.75 Aligned_cols=105 Identities=19% Similarity=0.328 Sum_probs=91.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC---CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG---ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~---~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
++|||++++.+++.+++.|+..+ +.+..+||+|++++|..+++.+ +..+|+|||+++++|+|+|+|++||++++|
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~ 358 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTA 358 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCc
Confidence 48999999999999999999874 4588999999999999986654 246899999999999999999999999854
Q ss_pred ------------------CChhhHHHHhhhcccCCCCceEEEEecCccH
Q psy18034 78 ------------------CKAKLFVHRVGRCARAGRSGVAYSLVSSDEL 108 (251)
Q Consensus 78 ------------------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 108 (251)
.|..+|.||+||+||.| +|.||.+++..+.
T Consensus 359 r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 359 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 35679999999999997 9999999986543
No 79
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.63 E-value=7.6e-16 Score=139.01 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=72.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC--CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG--ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~--~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~ 78 (251)
|+||||+|+..++.++..|+..+ +.+..+||.|++.+|.+. ++.+||||||+++||+|+|.+ +|| ++ |.
T Consensus 274 k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~ 344 (357)
T TIGR03158 274 RGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-AR 344 (357)
T ss_pred eEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CC
Confidence 58999999999999999999864 578889999999988753 478999999999999999987 666 56 89
Q ss_pred ChhhHHHHhhhcc
Q psy18034 79 KAKLFVHRVGRCA 91 (251)
Q Consensus 79 ~~~~y~qr~GR~g 91 (251)
+.+.|+||+||+|
T Consensus 345 ~~~~yiqR~GR~g 357 (357)
T TIGR03158 345 DAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHhhhcccCC
Confidence 9999999999987
No 80
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.55 E-value=2.8e-14 Score=142.07 Aligned_cols=106 Identities=17% Similarity=0.266 Sum_probs=96.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC---CceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG---KIRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g---~~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
|+|||+......+.|...|...|+....++|+++..+|...++.|+.. ..-+|++|.+++.|||++.+++||+||+|
T Consensus 489 KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~d 568 (1033)
T PLN03142 489 RVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSD 568 (1033)
T ss_pred eEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCC
Confidence 689999999999999999999999999999999999999999999764 34578999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCceE--EEEecCc
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVA--YSLVSSD 106 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~--i~l~~~~ 106 (251)
|||....|++||+.|.|+...+ +.|++.+
T Consensus 569 WNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 569 WNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred CChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999997644 5556654
No 81
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.54 E-value=2.2e-14 Score=145.57 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=69.1
Q ss_pred CEEEEcCcH---HHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEe----cccccccccccc-ccEEE
Q psy18034 1 MTVVFTATK---YHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVV----TDVAARGIDIPS-LDAVI 72 (251)
Q Consensus 1 k~iIF~~t~---~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~----Td~~~~Gldi~~-v~~VI 72 (251)
++||||+|+ +.|+.+++.|+..|+++..+||+|++ ..+++|++|+++|||| ||+++||||+|+ +++||
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI 403 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAV 403 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEE
Confidence 479999999 99999999999999999999999974 6899999999999999 599999999999 89999
Q ss_pred EecCCC
Q psy18034 73 NYNFPC 78 (251)
Q Consensus 73 ~~d~P~ 78 (251)
|||+|.
T Consensus 404 ~~~~P~ 409 (1171)
T TIGR01054 404 FLGVPK 409 (1171)
T ss_pred EECCCC
Confidence 999883
No 82
>PRK09401 reverse gyrase; Reviewed
Probab=99.53 E-value=1.3e-14 Score=147.02 Aligned_cols=87 Identities=25% Similarity=0.322 Sum_probs=79.8
Q ss_pred CEEEEcCcHHH---HHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEe----cccccccccccc-ccEEE
Q psy18034 1 MTVVFTATKYH---VEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVV----TDVAARGIDIPS-LDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~---~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~----Td~~~~Gldi~~-v~~VI 72 (251)
++||||+|+.. ++.+++.|+..|+.+..+||+| ...+++|++|+++|||| ||+++||||+|+ +++||
T Consensus 330 ~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI 404 (1176)
T PRK09401 330 GGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAI 404 (1176)
T ss_pred CEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEE
Confidence 47999999777 9999999999999999999999 23459999999999999 699999999999 89999
Q ss_pred EecCCC------ChhhHHHHhhhccc
Q psy18034 73 NYNFPC------KAKLFVHRVGRCAR 92 (251)
Q Consensus 73 ~~d~P~------~~~~y~qr~GR~gR 92 (251)
|||+|. ....+.||+||+..
T Consensus 405 ~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 405 FYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EeCCCCEEEeccccccCHHHHHHHHh
Confidence 999998 77889999999964
No 83
>PRK14701 reverse gyrase; Provisional
Probab=99.52 E-value=1.2e-14 Score=150.57 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=90.8
Q ss_pred CEEEEcCcHHH---HHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEec----ccccccccccc-ccEEE
Q psy18034 1 MTVVFTATKYH---VEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVT----DVAARGIDIPS-LDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~---~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~T----d~~~~Gldi~~-v~~VI 72 (251)
++||||+|+.. |+.+++.|...|+.+..+||+ |...+++|++|+++||||| |+++||||+|+ |++||
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi 406 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAV 406 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEE
Confidence 47999999876 489999999999999999995 8899999999999999999 59999999998 99999
Q ss_pred EecCCC---ChhhHHHHh-------------hhcccCCCCceEEEEecCccHHHHH
Q psy18034 73 NYNFPC---KAKLFVHRV-------------GRCARAGRSGVAYSLVSSDELCYYL 112 (251)
Q Consensus 73 ~~d~P~---~~~~y~qr~-------------GR~gR~g~~g~~i~l~~~~e~~~~~ 112 (251)
|||+|. +.+.|.|-. ||+||.|..+.++..........++
T Consensus 407 ~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 407 FYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLR 462 (1638)
T ss_pred EeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHH
Confidence 999999 888776655 9999998877776444444444333
No 84
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.50 E-value=3.7e-14 Score=130.51 Aligned_cols=106 Identities=23% Similarity=0.349 Sum_probs=94.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEE---ecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN---YNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~---~d~P 77 (251)
|||||++|+..|.+++..|...|+++..+|++|+..+|..+-.+|.++++.++|+|-+++-|+|+|.-.+|+. .+.-
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~ 521 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIE 521 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999997665542 2222
Q ss_pred -CChhhHHHHhhhcccCCC--CceEEEEecCc
Q psy18034 78 -CKAKLFVHRVGRCARAGR--SGVAYSLVSSD 106 (251)
Q Consensus 78 -~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~ 106 (251)
-++..|.|++||+||.+- .|.+|+++.+.
T Consensus 522 WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 522 WLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 479999999999999875 58999998753
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.47 E-value=2.1e-13 Score=134.44 Aligned_cols=92 Identities=22% Similarity=0.318 Sum_probs=81.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC---CcEEEEcCCCCHHHH----HHHHHHH-hcCC---ceEEEecccccccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG---ISSTYIYSDLDPTAR----KINAAKF-QTGK---IRVLVVTDVAARGIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~---~~~~~i~g~~~~~~r----~~~~~~F-~~g~---~~iLv~Td~~~~Gldi~~v~ 69 (251)
+++|||||++.+..+++.|+..+ ..+..+||.+++.+| .++++.| ++|+ ..|||||+++++|+|+ +++
T Consensus 562 ~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~D 640 (878)
T PRK09694 562 QVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFD 640 (878)
T ss_pred EEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCC
Confidence 47999999999999999999764 679999999999998 4678889 6665 4799999999999999 589
Q ss_pred EEEEecCCCChhhHHHHhhhcccCCC
Q psy18034 70 AVINYNFPCKAKLFVHRVGRCARAGR 95 (251)
Q Consensus 70 ~VI~~d~P~~~~~y~qr~GR~gR~g~ 95 (251)
++|....| .+.++||+||++|.++
T Consensus 641 vlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 641 WLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eEEECCCC--HHHHHHHHhccCCCCC
Confidence 99998888 6899999999999875
No 86
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.46 E-value=6.2e-13 Score=123.24 Aligned_cols=92 Identities=30% Similarity=0.476 Sum_probs=88.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
+++|||.+..+++.++..+...|+ +..++|..++.+|..+++.|+.|+.++||++.++.+|+|+|+++++|....+.|+
T Consensus 285 ~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~ 363 (442)
T COG1061 285 KTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSR 363 (442)
T ss_pred cEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcH
Confidence 589999999999999999998887 8899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccC
Q psy18034 81 KLFVHRVGRCARA 93 (251)
Q Consensus 81 ~~y~qr~GR~gR~ 93 (251)
..|.||+||.-|.
T Consensus 364 ~~~~Q~lGR~LR~ 376 (442)
T COG1061 364 RLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHhhhhccC
Confidence 9999999999993
No 87
>KOG0353|consensus
Probab=99.43 E-value=1.7e-13 Score=120.96 Aligned_cols=111 Identities=21% Similarity=0.294 Sum_probs=104.0
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCChh
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAK 81 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~ 81 (251)
.||||-++..++.++..|+..|+.+..+|..|.+++|...-+.|..|+++|+|+|-++++|+|-|+|+.||+..+|.+.+
T Consensus 320 giiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksie 399 (695)
T KOG0353|consen 320 GIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIE 399 (695)
T ss_pred ceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHH-------------------------------------------HhhhcccCCCCceEEEEecCccHHHHH
Q psy18034 82 LFVH-------------------------------------------RVGRCARAGRSGVAYSLVSSDELCYYL 112 (251)
Q Consensus 82 ~y~q-------------------------------------------r~GR~gR~g~~g~~i~l~~~~e~~~~~ 112 (251)
.|.| -.||+||.+.+..|++.+.-.++....
T Consensus 400 nyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~s 473 (695)
T KOG0353|consen 400 NYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKIS 473 (695)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHH
Confidence 9999 679999999999999998766554443
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=1.1e-12 Score=123.32 Aligned_cols=93 Identities=25% Similarity=0.296 Sum_probs=79.0
Q ss_pred HHHHHHHHHhC--CCcEEEEcCCCCHHHH--HHHHHHHhcCCceEEEeccccccccccccccEEE--EecC----CC---
Q psy18034 12 VEYVHKILGLA--GISSTYIYSDLDPTAR--KINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI--NYNF----PC--- 78 (251)
Q Consensus 12 ~~~l~~~L~~~--~~~~~~i~g~~~~~~r--~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI--~~d~----P~--- 78 (251)
++.+.+.|... +.++..+|+++++..+ ..++++|++|+.+|||+|+++++|+|+|+++.|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 57778888776 7889999999987665 8999999999999999999999999999999874 6765 32
Q ss_pred ---ChhhHHHHhhhcccCCCCceEEEEec
Q psy18034 79 ---KAKLFVHRVGRCARAGRSGVAYSLVS 104 (251)
Q Consensus 79 ---~~~~y~qr~GR~gR~g~~g~~i~l~~ 104 (251)
....|+|++||+||.+..|.++....
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 24678999999999999999886543
No 89
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=2.9e-12 Score=124.71 Aligned_cols=105 Identities=23% Similarity=0.210 Sum_probs=96.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccc------------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSL------------ 68 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v------------ 68 (251)
.+||||+|+..++.++..|...|+++..+||. +.+|+..+.+|+.+...|+||||+|+||+||+--
T Consensus 432 pVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~ 509 (830)
T PRK12904 432 PVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLE 509 (830)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhh
Confidence 48999999999999999999999999999995 8899999999999999999999999999999743
Q ss_pred --------------------------cEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 69 --------------------------DAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 69 --------------------------~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
=+||-...|.|..---|-.||+||-|.+|.+-.+++-++
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 510 EETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred hhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 178888899999999999999999999999988887554
No 90
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.37 E-value=3.8e-12 Score=128.73 Aligned_cols=92 Identities=24% Similarity=0.377 Sum_probs=81.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC------C---CcEEEEcCCCCHHHHHHHHHHHhcCCc-eEEEeccccccccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA------G---ISSTYIYSDLDPTARKINAAKFQTGKI-RVLVVTDVAARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~------~---~~~~~i~g~~~~~~r~~~~~~F~~g~~-~iLv~Td~~~~Gldi~~v~~ 70 (251)
|+||||.++.|++.+.+.|... + ..+..+||+++ ++..++++|+++.. .|+|++|++.+|+|+|.|.+
T Consensus 700 KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~ 777 (1123)
T PRK11448 700 KTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICN 777 (1123)
T ss_pred cEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccE
Confidence 7999999999999999887753 2 24567899986 46789999999987 69999999999999999999
Q ss_pred EEEecCCCChhhHHHHhhhcccCC
Q psy18034 71 VINYNFPCKAKLFVHRVGRCARAG 94 (251)
Q Consensus 71 VI~~d~P~~~~~y~qr~GR~gR~g 94 (251)
||.+++|.|...|+|++||+.|..
T Consensus 778 vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 778 LVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred EEEecCCCCHHHHHHHHhhhccCC
Confidence 999999999999999999999964
No 91
>KOG0329|consensus
Probab=99.36 E-value=2.2e-13 Score=114.56 Aligned_cols=74 Identities=30% Similarity=0.451 Sum_probs=63.0
Q ss_pred EEeccccccccccccccEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCcc-HHHHHHHHHHhCCCCeecc
Q psy18034 53 LVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE-LCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 53 Lv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~i~~~l~~~~~~~~ 126 (251)
+|+|++++||+|+..++.|+|||+|.++++|.||+||+||.|.+|.+++|++..+ ...+..+.......+..+|
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLp 376 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELP 376 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcC
Confidence 8999999999999999999999999999999999999999999999999998654 4455556655555555444
No 92
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.36 E-value=3.7e-12 Score=123.72 Aligned_cols=99 Identities=22% Similarity=0.223 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhC--CCcEEEEcCCCCH--HHHHHHHHHHhcCCceEEEeccccccccccccccEEE--EecCCCC---
Q psy18034 9 KYHVEYVHKILGLA--GISSTYIYSDLDP--TARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI--NYNFPCK--- 79 (251)
Q Consensus 9 ~~~~~~l~~~L~~~--~~~~~~i~g~~~~--~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI--~~d~P~~--- 79 (251)
...++.+.+.|+.. +.++..+|+++.+ .+++.++++|++|+.+|||+|+++++|+|+|+++.|+ +.|.+-+
T Consensus 436 g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pd 515 (679)
T PRK05580 436 GPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPD 515 (679)
T ss_pred eccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCc
Confidence 34677888888876 7899999999874 6789999999999999999999999999999999985 5555533
Q ss_pred -------hhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 80 -------AKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 80 -------~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
...|+|++||+||.+..|.++......+
T Consensus 516 fra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 2679999999999999999987765444
No 93
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.35 E-value=8.5e-12 Score=114.31 Aligned_cols=113 Identities=24% Similarity=0.316 Sum_probs=100.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEec-----
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYN----- 75 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d----- 75 (251)
+++|-+-|++.++.|.++|...|+++.++|++.+.-+|.+++.+.|.|.++|||.-+++-+|+|+|.|+.|--+|
T Consensus 448 RvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeG 527 (663)
T COG0556 448 RVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEG 527 (663)
T ss_pred eEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccc
Confidence 578889999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHH
Q psy18034 76 FPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDL 114 (251)
Q Consensus 76 ~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i 114 (251)
+..|..+++|-+|||+| +-.|.++.....-...+-..+
T Consensus 528 FLRse~SLIQtIGRAAR-N~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 528 FLRSERSLIQTIGRAAR-NVNGKVILYADKITDSMQKAI 565 (663)
T ss_pred cccccchHHHHHHHHhh-ccCCeEEEEchhhhHHHHHHH
Confidence 56899999999999999 568999988765433333333
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.33 E-value=1e-11 Score=117.11 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC-CChhhHHHH
Q psy18034 10 YHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP-CKAKLFVHR 86 (251)
Q Consensus 10 ~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P-~~~~~y~qr 86 (251)
..++.+++.|+.. +..+..+||.|+..++.+++++|++|+++|||||.|.+-|+|+|+.+++|-.|.- ...+++.|-
T Consensus 492 ~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQL 571 (677)
T COG1200 492 QAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQL 571 (677)
T ss_pred hhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHh
Confidence 3567788888755 5679999999999999999999999999999999999999999999999988754 567889999
Q ss_pred hhhcccCCCCceEEEEecCcc
Q psy18034 87 VGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 87 ~GR~gR~g~~g~~i~l~~~~e 107 (251)
.||+||.+..+.|+++..+..
T Consensus 572 RGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 572 RGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred ccccCCCCcceEEEEEeCCCC
Confidence 999999999999999998765
No 95
>KOG0953|consensus
Probab=99.32 E-value=1.2e-11 Score=113.58 Aligned_cols=148 Identities=21% Similarity=0.275 Sum_probs=103.7
Q ss_pred cCcHHHHHHHHHHHHhCCCc-EEEEcCCCCHHHHHHHHHHHhc--CCceEEEeccccccccccccccEEEEecC------
Q psy18034 6 TATKYHVEYVHKILGLAGIS-STYIYSDLDPTARKINAAKFQT--GKIRVLVVTDVAARGIDIPSLDAVINYNF------ 76 (251)
Q Consensus 6 ~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~~~~r~~~~~~F~~--g~~~iLv~Td~~~~Gldi~~v~~VI~~d~------ 76 (251)
|-|++..-.+...+...|.. ++++||++|++.|.+....|.+ ++++||||||+.++|+|+ +++.||.|++
T Consensus 363 ~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~ 441 (700)
T KOG0953|consen 363 AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGR 441 (700)
T ss_pred EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcc
Confidence 44567788888888888665 9999999999999999999998 799999999999999999 7788888775
Q ss_pred ---CCChhhHHHHhhhcccCCCC---ceEEEEecCccHHHHHHHHHHhCCCCeeccCCc-cccccccccccccCCCcchh
Q psy18034 77 ---PCKAKLFVHRVGRCARAGRS---GVAYSLVSSDELCYYLDLLLFLGRKPVLADDSM-KGKIRHQDGMFGKIPQGLME 149 (251)
Q Consensus 77 ---P~~~~~y~qr~GR~gR~g~~---g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 149 (251)
|-+..+..|-+||+||.|.. |.+.++ ..+++..+ .+.+..+.+.+.... -......+.+...+|+....
T Consensus 442 e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl-~~eDL~~L---~~~l~~p~epi~~agl~pt~eqie~fa~~~Pd~t~s 517 (700)
T KOG0953|consen 442 ETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL-HSEDLKLL---KRILKRPVEPIKNAGLWPTDEQIELFAYHLPDATPS 517 (700)
T ss_pred cceeccHHHHHHHhhcccccccCCcCceEEEe-eHhhHHHH---HHHHhCCchHHHhccCCccHHHHHHHHHhCCCccHH
Confidence 45678889999999998742 554444 34445544 445555554432110 01111234455567776655
Q ss_pred hHHHHHHHH
Q psy18034 150 DQISEIMNW 158 (251)
Q Consensus 150 ~~~~~~~~~ 158 (251)
..++.+.+.
T Consensus 518 nLld~f~~~ 526 (700)
T KOG0953|consen 518 NLLDIFVKL 526 (700)
T ss_pred HHHHHHHHH
Confidence 544444433
No 96
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=1.1e-11 Score=120.95 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=95.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccc-------------
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSL------------- 68 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v------------- 68 (251)
+||||+|.+.++.++..|...|+++..+|+.+++.++..+.++|+.|. |+|||++|+||+||.--
T Consensus 447 VLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~ 524 (896)
T PRK13104 447 VLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPAD 524 (896)
T ss_pred EEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccc
Confidence 799999999999999999999999999999999999999999999995 99999999999998621
Q ss_pred -------------------------cEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 69 -------------------------DAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 69 -------------------------~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
=+||--..+.|..-=-|-.||+||-|.+|.+-.|++-++
T Consensus 525 ~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 525 ASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred hhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 178888889999989999999999999999988887544
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=2.1e-11 Score=118.97 Aligned_cols=105 Identities=20% Similarity=0.220 Sum_probs=96.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccc------------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSL------------ 68 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v------------ 68 (251)
.+||||+|...++.++..|...|+++..+|+.+++.++..+.++|+.|. |+|||++++||+||.--
T Consensus 451 pVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~ 528 (908)
T PRK13107 451 PVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALEN 528 (908)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcc
Confidence 4899999999999999999999999999999999999999999999998 99999999999998621
Q ss_pred -------------------------cEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 69 -------------------------DAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 69 -------------------------~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
=+||-...|.|..-=-|-.||+||-|.+|.+-.|++-++
T Consensus 529 ~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 529 PTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred hhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 178888899999999999999999999999998888655
No 98
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.22 E-value=3.5e-11 Score=117.59 Aligned_cols=111 Identities=29% Similarity=0.423 Sum_probs=93.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-------------------------------------CCcEEEEcCCCCHHHHHHHHH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-------------------------------------GISSTYIYSDLDPTARKINAA 43 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-------------------------------------~~~~~~i~g~~~~~~r~~~~~ 43 (251)
|++|||+|+..+...++.|+.. -..++++|++|+.+.|..+-+
T Consensus 255 qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~ 334 (766)
T COG1204 255 QVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVED 334 (766)
T ss_pred eEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHH
Confidence 6899999999999999988731 024678999999999999999
Q ss_pred HHhcCCceEEEeccccccccccccccEEE----Eec-----CCCChhhHHHHhhhcccCCC--CceEEEEe-cCccHHHH
Q psy18034 44 KFQTGKIRVLVVTDVAARGIDIPSLDAVI----NYN-----FPCKAKLFVHRVGRCARAGR--SGVAYSLV-SSDELCYY 111 (251)
Q Consensus 44 ~F~~g~~~iLv~Td~~~~Gldi~~v~~VI----~~d-----~P~~~~~y~qr~GR~gR~g~--~g~~i~l~-~~~e~~~~ 111 (251)
.|+.|+++||+||+.++.|+|+|.-.+|| -|| .+-++-.+.|+.|||||.|- .|.++.+. +..+..++
T Consensus 335 ~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~ 414 (766)
T COG1204 335 AFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYL 414 (766)
T ss_pred HHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHH
Confidence 99999999999999999999999888877 477 66789999999999999875 46777777 34444444
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.18 E-value=1.5e-10 Score=114.87 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=96.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC-C
Q psy18034 2 TVVFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP-C 78 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P-~ 78 (251)
+-.-+|..++.+.+++.|+.. ...+++.||.|+..+-+.++.+|-+|+.+|||||.+.+-|||+|+++.+|--+.- .
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKF 885 (1139)
T ss_pred EEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccc
Confidence 334467788888888888877 5678999999999999999999999999999999999999999999988854432 4
Q ss_pred ChhhHHHHhhhcccCCCCceEEEEecCc------cHHHHHHHHH
Q psy18034 79 KAKLFVHRVGRCARAGRSGVAYSLVSSD------ELCYYLDLLL 116 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~i~~ 116 (251)
..+++.|-.||+||.++.+.||.++.+. -...+..|..
T Consensus 886 GLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 886 GLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred cHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 5788999999999999999999999753 2445555554
No 100
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.17 E-value=5.5e-11 Score=117.59 Aligned_cols=119 Identities=29% Similarity=0.431 Sum_probs=100.6
Q ss_pred CEEEEcCcHHHHHHHH----HHHHhCC----CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEE
Q psy18034 1 MTVVFTATKYHVEYVH----KILGLAG----ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~----~~L~~~~----~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI 72 (251)
|+|+|+.++..++.++ +.+...+ ..+...+|+|...+|..+..+|+.|+..++++|.++.-|+|+.+++.||
T Consensus 308 ~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi 387 (851)
T COG1205 308 QTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVI 387 (851)
T ss_pred eEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHh
Confidence 6899999999999997 4444445 5688899999999999999999999999999999999999999999999
Q ss_pred EecCCC-ChhhHHHHhhhcccCCCCceEEEEecCc--cHHHHHHHHHHhC
Q psy18034 73 NYNFPC-KAKLFVHRVGRCARAGRSGVAYSLVSSD--ELCYYLDLLLFLG 119 (251)
Q Consensus 73 ~~d~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~--e~~~~~~i~~~l~ 119 (251)
.+..|. +..+++||.||+||.++.+..+.+...+ +..+...-+.+..
T Consensus 388 ~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 388 AYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999 8999999999999999777777766533 3334444444444
No 101
>KOG4150|consensus
Probab=99.17 E-value=4.7e-11 Score=110.18 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=100.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----C----CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----G----ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~----~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI 72 (251)
+||-||.++..|+.+....+.. + -.+..+.|+...++|..+-...-.|+..-+|+|+++..|||+..++.|+
T Consensus 527 R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl 606 (1034)
T KOG4150|consen 527 RCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVL 606 (1034)
T ss_pred cEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEE
Confidence 5899999999999876655543 2 1245677999999999998888899999999999999999999999999
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEec--CccHHHHHHHHHHhCCCCee
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVS--SDELCYYLDLLLFLGRKPVL 124 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~--~~e~~~~~~i~~~l~~~~~~ 124 (251)
+.++|.|...+.|+.||+||.+++..++.++. |-+..|+..-...++.+-.+
T Consensus 607 ~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~E 660 (1034)
T KOG4150|consen 607 HLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEE 660 (1034)
T ss_pred EccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcce
Confidence 99999999999999999999999888766654 55666665555555544433
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.13 E-value=8.5e-10 Score=96.60 Aligned_cols=100 Identities=22% Similarity=0.323 Sum_probs=81.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhC-C-CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEE-ecCC-
Q psy18034 2 TVVFTATKYHVEYVHKILGLA-G-ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN-YNFP- 77 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~-~-~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~-~d~P- 77 (251)
++||+++....+.+++.|+.. + ..++++|+. ...|.+.+++||+|+..+||+|.+++||+.+|+|++.+- -.-+
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 689999999999999999544 3 345788887 357899999999999999999999999999999997653 3322
Q ss_pred CChhhHHHHhhhcccCCC--CceEEEEe
Q psy18034 78 CKAKLFVHRVGRCARAGR--SGVAYSLV 103 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~--~g~~i~l~ 103 (251)
.+.+.++|.+||+||.-. .|..+.|-
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 678999999999999643 46655553
No 103
>KOG0950|consensus
Probab=99.08 E-value=5.2e-10 Score=108.44 Aligned_cols=114 Identities=26% Similarity=0.371 Sum_probs=96.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--------------------------------------CCcEEEEcCCCCHHHHHHHH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--------------------------------------GISSTYIYSDLDPTARKINA 42 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--------------------------------------~~~~~~i~g~~~~~~r~~~~ 42 (251)
++||||+++..|+.++..+... ...++++|.+++.++|+.+-
T Consensus 462 ~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE 541 (1008)
T KOG0950|consen 462 SVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIE 541 (1008)
T ss_pred eEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHH
Confidence 4899999999999888655321 14688999999999999999
Q ss_pred HHHhcCCceEEEeccccccccccccccEEEEecC----CCChhhHHHHhhhcccCCC--CceEEEEecCccHHHHHHH
Q psy18034 43 AKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNF----PCKAKLFVHRVGRCARAGR--SGVAYSLVSSDELCYYLDL 114 (251)
Q Consensus 43 ~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~----P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~e~~~~~~i 114 (251)
..|+.|.+.|++||+.++-|+|+|...+++-.-. +-+.-.|.|++|||||+|- .|.+++++.+.|...+.++
T Consensus 542 ~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 542 AAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred HHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 9999999999999999999999999998886432 3567889999999999975 5899999999988777643
No 104
>KOG0390|consensus
Probab=98.95 E-value=5e-09 Score=101.22 Aligned_cols=104 Identities=12% Similarity=0.214 Sum_probs=90.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCce---EEEeccccccccccccccEEEEecCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIR---VLVVTDVAARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~---iLv~Td~~~~Gldi~~v~~VI~~d~P~ 78 (251)
+++..+.+.+.+.+...++..|..+..+||.|+..+|..+++.|.+.... .|.+|-+++.||++-+.+.||.||.+|
T Consensus 598 ~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dW 677 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDW 677 (776)
T ss_pred EEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCC
Confidence 44555777777778888888899999999999999999999999986433 678889999999999999999999999
Q ss_pred ChhhHHHHhhhcccCCCCceE--EEEecC
Q psy18034 79 KAKLFVHRVGRCARAGRSGVA--YSLVSS 105 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~g~~--i~l~~~ 105 (251)
||..-.|.++|+.|.||+-.| |-|++.
T Consensus 678 NPa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 678 NPAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred CchhHHHHHHHhccCCCcceEEEEEeecC
Confidence 999999999999999998765 556653
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.95 E-value=4.8e-09 Score=103.00 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=88.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHH----hcCCceEEEeccccccccccccccEEEEecC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKF----QTGKIRVLVVTDVAARGIDIPSLDAVINYNF 76 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F----~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~ 76 (251)
|++|-|||...|..+++.|+..+..+..+||.+....|.+..+.. +.+...|+|+|.+.+-|+|+. .+++|-=
T Consensus 442 kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe-- 518 (733)
T COG1203 442 KVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE-- 518 (733)
T ss_pred cEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--
Confidence 589999999999999999999987799999999999998877754 456788999999999999994 7766643
Q ss_pred CCChhhHHHHhhhcccCC--CCceEEEEecCccHH
Q psy18034 77 PCKAKLFVHRVGRCARAG--RSGVAYSLVSSDELC 109 (251)
Q Consensus 77 P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~ 109 (251)
+...++.+||+||++|-| ..|..+.+......+
T Consensus 519 ~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 519 LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred CCCHHHHHHHHHHHhhcccccCCceeEeecccCCC
Confidence 455889999999999999 567777776654433
No 106
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.94 E-value=2e-09 Score=105.62 Aligned_cols=104 Identities=24% Similarity=0.394 Sum_probs=92.2
Q ss_pred EEEEcCcHHHHHHHHHHHHh----CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecC-
Q psy18034 2 TVVFTATKYHVEYVHKILGL----AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNF- 76 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~- 76 (251)
++||.+.....+...+.|+. ....+..+||.|+.+++.++++.-..|+.+|+++|++++.+|.+|++.+||.-++
T Consensus 262 ILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~a 341 (845)
T COG1643 262 ILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLA 341 (845)
T ss_pred EEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcc
Confidence 68999999999999999998 3578999999999999999888887787779999999999999999999996443
Q ss_pred -----------------CCChhhHHHHhhhcccCCCCceEEEEecCc
Q psy18034 77 -----------------PCKAKLFVHRVGRCARAGRSGVAYSLVSSD 106 (251)
Q Consensus 77 -----------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 106 (251)
|-|-.+..||.||+||-+ +|.||-+++.+
T Consensus 342 k~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~ 387 (845)
T COG1643 342 KEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEE 387 (845)
T ss_pred cccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHH
Confidence 567788899999999965 89999999853
No 107
>KOG0384|consensus
Probab=98.90 E-value=1.2e-08 Score=101.13 Aligned_cols=106 Identities=18% Similarity=0.296 Sum_probs=99.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC---CceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG---KIRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g---~~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
|+|||..-....+-|+++|..++++---+-|.+..+-|.+.++.|... ..-+|+||-+.+.|||+-.++.||-||--
T Consensus 701 rVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSD 780 (1373)
T KOG0384|consen 701 RVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSD 780 (1373)
T ss_pred eEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCC
Confidence 689999999999999999999999999999999999999999999876 45699999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCc--eEEEEecCc
Q psy18034 78 CKAKLFVHRVGRCARAGRSG--VAYSLVSSD 106 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g--~~i~l~~~~ 106 (251)
|||..=+|...||.|.||+. .+|-|++.+
T Consensus 781 WNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 781 WNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred CCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 99999999999999999976 458888865
No 108
>KOG0922|consensus
Probab=98.84 E-value=7.2e-09 Score=97.48 Aligned_cols=106 Identities=22% Similarity=0.338 Sum_probs=92.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhC----C--C--cEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLA----G--I--SSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN 73 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~----~--~--~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~ 73 (251)
++||-...+.++.+++.|.+. + . -+..+||+|+.+++.++++.-..|..+|+++|++++.-+.||++.+||.
T Consensus 261 ILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVD 340 (674)
T KOG0922|consen 261 ILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVD 340 (674)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEc
Confidence 689999999999999999876 1 1 2467999999999999999988899999999999999999999999996
Q ss_pred ecC------------------CCChhhHHHHhhhcccCCCCceEEEEecCccH
Q psy18034 74 YNF------------------PCKAKLFVHRVGRCARAGRSGVAYSLVSSDEL 108 (251)
Q Consensus 74 ~d~------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 108 (251)
-++ |-|..+-.||.||+||.| +|.|+-+++..+.
T Consensus 341 sG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 341 SGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred CCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 332 567888899999999965 8999999987654
No 109
>KOG0947|consensus
Probab=98.83 E-value=3.8e-08 Score=95.71 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=89.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhCC---------------------------------------CcEEEEcCCCCHHHHHHHH
Q psy18034 2 TVVFTATKYHVEYVHKILGLAG---------------------------------------ISSTYIYSDLDPTARKINA 42 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~---------------------------------------~~~~~i~g~~~~~~r~~~~ 42 (251)
+||||-++..|++.++.|...+ -+++++||++-+--++-+-
T Consensus 570 ~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE 649 (1248)
T KOG0947|consen 570 VVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVE 649 (1248)
T ss_pred eEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHH
Confidence 6899999999999999996442 2367789999888888777
Q ss_pred HHHhcCCceEEEeccccccccccccccEEEEe----c----CCCChhhHHHHhhhcccCCC--CceEEEEecCccHHHHH
Q psy18034 43 AKFQTGKIRVLVVTDVAARGIDIPSLDAVINY----N----FPCKAKLFVHRVGRCARAGR--SGVAYSLVSSDELCYYL 112 (251)
Q Consensus 43 ~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~----d----~P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~e~~~~~ 112 (251)
--|..|-++||.||..+++|+|.|.-++|+.- | ---.|-.|.|++|||||.|- .|.++.+... ..+-..
T Consensus 650 ~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~-~vp~~a 728 (1248)
T KOG0947|consen 650 LLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD-SVPSAA 728 (1248)
T ss_pred HHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC-CCCCHH
Confidence 88999999999999999999999988888741 1 11357899999999999985 4666665543 344444
Q ss_pred HHHHH
Q psy18034 113 DLLLF 117 (251)
Q Consensus 113 ~i~~~ 117 (251)
.+...
T Consensus 729 ~l~~l 733 (1248)
T KOG0947|consen 729 TLKRL 733 (1248)
T ss_pred HHhhH
Confidence 55443
No 110
>KOG0385|consensus
Probab=98.83 E-value=2e-08 Score=95.75 Aligned_cols=107 Identities=17% Similarity=0.286 Sum_probs=97.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCC---ceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGK---IRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~---~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
|++||..-....+-|-.++.-+|+..+.+.|+++.++|...++.|.... .=.|++|-+.+-|||+...+.||.||--
T Consensus 489 RVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSD 568 (971)
T KOG0385|consen 489 RVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSD 568 (971)
T ss_pred eEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCC
Confidence 6899999999999999999999999999999999999999999998875 3488999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCce--EEEEecCcc
Q psy18034 78 CKAKLFVHRVGRCARAGRSGV--AYSLVSSDE 107 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~--~i~l~~~~e 107 (251)
|||..=.|.+-||.|.|+... ++-|++.+.
T Consensus 569 WNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 569 WNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred CCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 999999999999999999764 456676553
No 111
>KOG0387|consensus
Probab=98.79 E-value=2.6e-08 Score=95.17 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=99.2
Q ss_pred CEEEEcCcHHHHHHHHHHHH-hCCCcEEEEcCCCCHHHHHHHHHHHhcCCc--eEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILG-LAGISSTYIYSDLDPTARKINAAKFQTGKI--RVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~-~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~--~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
++++|..|+...+.+-..|. ..|+....+.|..+...|...+++|.++.. -.|++|-|.+.|+|+-.++.||-||+-
T Consensus 548 rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPd 627 (923)
T KOG0387|consen 548 RVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPD 627 (923)
T ss_pred EEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCC
Confidence 58999999999999999998 579999999999999999999999998854 378999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCce--EEEEecC---ccHHHHHHHH
Q psy18034 78 CKAKLFVHRVGRCARAGRSGV--AYSLVSS---DELCYYLDLL 115 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~--~i~l~~~---~e~~~~~~i~ 115 (251)
|||++=.|..-|+.|.|++.. +|-|++. +|.-|.+++.
T Consensus 628 WNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~ 670 (923)
T KOG0387|consen 628 WNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIF 670 (923)
T ss_pred CCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHH
Confidence 999999999999999999754 3556654 3444444443
No 112
>KOG0951|consensus
Probab=98.78 E-value=2.8e-08 Score=98.83 Aligned_cols=115 Identities=23% Similarity=0.370 Sum_probs=95.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-------------------------------------CCcEEEEcCCCCHHHHHHHHH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-------------------------------------GISSTYIYSDLDPTARKINAA 43 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-------------------------------------~~~~~~i~g~~~~~~r~~~~~ 43 (251)
|+|||+.+++.+...++.++.. .++.+..|.||+..+|..+-+
T Consensus 548 qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 548 QVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred cEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 6899999998888777777621 145778999999999999999
Q ss_pred HHhcCCceEEEeccccccccccccccEEEE----ecC------CCChhhHHHHhhhcccCC--CCceEEEEecCccHHHH
Q psy18034 44 KFQTGKIRVLVVTDVAARGIDIPSLDAVIN----YNF------PCKAKLFVHRVGRCARAG--RSGVAYSLVSSDELCYY 111 (251)
Q Consensus 44 ~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~----~d~------P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~ 111 (251)
-|++|.+++||+|-.++.|+|+|.-+++|- ||+ +-+|..-.||.||+||.+ +.|..+.+....|+.++
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyy 707 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYY 707 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhh
Confidence 999999999999999999999999988883 664 467899999999999975 45777777777777776
Q ss_pred HHHH
Q psy18034 112 LDLL 115 (251)
Q Consensus 112 ~~i~ 115 (251)
..++
T Consensus 708 ls~m 711 (1674)
T KOG0951|consen 708 LSLM 711 (1674)
T ss_pred HHhh
Confidence 5543
No 113
>KOG0392|consensus
Probab=98.74 E-value=4.7e-08 Score=96.98 Aligned_cols=107 Identities=22% Similarity=0.321 Sum_probs=92.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCC-cEE--EEcCCCCHHHHHHHHHHHhcC-CceEE-EeccccccccccccccEEEEec
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGI-SST--YIYSDLDPTARKINAAKFQTG-KIRVL-VVTDVAARGIDIPSLDAVINYN 75 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~-~~~--~i~g~~~~~~r~~~~~~F~~g-~~~iL-v~Td~~~~Gldi~~v~~VI~~d 75 (251)
|++|||.-+...+.+.+-|.+... .+. .+.|+.++.+|.+++++|.++ .+++| ++|-|.+-|+|+-+.+.||.++
T Consensus 1342 RiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvE 1421 (1549)
T KOG0392|consen 1342 RILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVE 1421 (1549)
T ss_pred eeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEe
Confidence 689999999999999887766533 343 678999999999999999999 77766 6778999999999999999999
Q ss_pred CCCChhhHHHHhhhcccCCCCce--EEEEecCcc
Q psy18034 76 FPCKAKLFVHRVGRCARAGRSGV--AYSLVSSDE 107 (251)
Q Consensus 76 ~P~~~~~y~qr~GR~gR~g~~g~--~i~l~~~~e 107 (251)
--|||..=+|.+.||.|.|++.. ++-+++..-
T Consensus 1422 HDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1422 HDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred cCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 99999999999999999999864 466666543
No 114
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.70 E-value=1e-07 Score=93.02 Aligned_cols=103 Identities=25% Similarity=0.298 Sum_probs=86.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC-CceEEEecccccccccccccc--------EEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG-KIRVLVVTDVAARGIDIPSLD--------AVI 72 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g-~~~iLv~Td~~~~Gldi~~v~--------~VI 72 (251)
+||.|.|....+.|+..|...|++...++..- .+++..+-+ ..| .-.|.|||++|+||.||.--. +||
T Consensus 429 VLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~--~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVI 505 (925)
T PRK12903 429 ILIGTAQVEDSETLHELLLEANIPHTVLNAKQ--NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVL 505 (925)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCceeecccc--hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEE
Confidence 79999999999999999999999999998863 344444433 455 456999999999999996332 899
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
....|.|..---|-.||+||.|.+|.+-.+++-++
T Consensus 506 gTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 506 GTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred ecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 99999999999999999999999999888877543
No 115
>KOG0923|consensus
Probab=98.68 E-value=4e-08 Score=92.41 Aligned_cols=103 Identities=23% Similarity=0.358 Sum_probs=88.0
Q ss_pred EEEEcCcHHHHHHHHHHHHhC---------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLA---------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI 72 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~---------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI 72 (251)
+|||....+..+...+.|... .+-++.+|+.+|.+.+..+++.--.|..+|++||++|...+.|+++.+||
T Consensus 476 ILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yVi 555 (902)
T KOG0923|consen 476 ILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVI 555 (902)
T ss_pred EEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEe
Confidence 588888888777776666544 24578899999999999999999999999999999999999999999999
Q ss_pred EecC------------------CCChhhHHHHhhhcccCCCCceEEEEecC
Q psy18034 73 NYNF------------------PCKAKLFVHRVGRCARAGRSGVAYSLVSS 105 (251)
Q Consensus 73 ~~d~------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 105 (251)
.-++ |.|..+-.||+||+||.| +|.|+-+++.
T Consensus 556 DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 556 DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 6433 667788899999999987 8999999984
No 116
>KOG0952|consensus
Probab=98.66 E-value=1.1e-07 Score=93.36 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=92.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----C-------------------CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----G-------------------ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~-------------------~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
+++|||.++..+-..++.|.+. | ......|.||...+|..+-+.|..|-++||+||.
T Consensus 351 qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTa 430 (1230)
T KOG0952|consen 351 QVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTA 430 (1230)
T ss_pred eEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecc
Confidence 5899999998888888877544 1 2356789999999999999999999999999999
Q ss_pred ccccccccccccEEEE----ecCCC------ChhhHHHHhhhcccC--CCCceEEEEecCccHHHHHHHH
Q psy18034 58 VAARGIDIPSLDAVIN----YNFPC------KAKLFVHRVGRCARA--GRSGVAYSLVSSDELCYYLDLL 115 (251)
Q Consensus 58 ~~~~Gldi~~v~~VI~----~d~P~------~~~~y~qr~GR~gR~--g~~g~~i~l~~~~e~~~~~~i~ 115 (251)
.++-|+|+|.--++|- ||.-. +.-..+|..|||||. +..|.++.+.+.+-+..+..+.
T Consensus 431 TLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 431 TLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred eeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 9999999998766663 44322 345678999999996 5679999998887777766543
No 117
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.62 E-value=2.9e-07 Score=91.66 Aligned_cols=106 Identities=15% Similarity=0.262 Sum_probs=95.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC--CceEEEeccccccccccccccEEEEecCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG--KIRVLVVTDVAARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g--~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~ 78 (251)
|++||++.....+-+...|+..++....++|+++...|...++.|.++ ..-++++|.+++.|+|+...++||.||..|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 689999999999999999999998899999999999999999999996 445777788999999999999999999999
Q ss_pred ChhhHHHHhhhcccCCCCceE--EEEecCc
Q psy18034 79 KAKLFVHRVGRCARAGRSGVA--YSLVSSD 106 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~g~~--i~l~~~~ 106 (251)
++....|...|+.|.|+...+ +-+++.+
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 999999999999999987654 4555544
No 118
>KOG0924|consensus
Probab=98.56 E-value=8.2e-08 Score=90.66 Aligned_cols=103 Identities=24% Similarity=0.411 Sum_probs=84.5
Q ss_pred EEEEcCcHHHHHHHHHHHH----hC------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEE
Q psy18034 2 TVVFTATKYHVEYVHKILG----LA------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAV 71 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~----~~------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~V 71 (251)
++||....+.++..+..+. .. ++.+..+|+.|++.-+.++++.--.|..+++|||++|...+.+|++.+|
T Consensus 566 ilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yV 645 (1042)
T KOG0924|consen 566 ILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYV 645 (1042)
T ss_pred EEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEE
Confidence 5788877665555444443 32 5788999999999999888888888889999999999999999999999
Q ss_pred EEecC------------------CCChhhHHHHhhhcccCCCCceEEEEecC
Q psy18034 72 INYNF------------------PCKAKLFVHRVGRCARAGRSGVAYSLVSS 105 (251)
Q Consensus 72 I~~d~------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 105 (251)
|..++ |-|...-.||.||+||.| +|.||-+++.
T Consensus 646 ID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 646 IDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred EecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 97543 667777789999999976 8999999885
No 119
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.52 E-value=4.9e-07 Score=88.85 Aligned_cols=71 Identities=25% Similarity=0.500 Sum_probs=64.2
Q ss_pred EEEEcCc---HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEec----cccccccccc-cccEEEE
Q psy18034 2 TVVFTAT---KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVT----DVAARGIDIP-SLDAVIN 73 (251)
Q Consensus 2 ~iIF~~t---~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~T----d~~~~Gldi~-~v~~VI~ 73 (251)
.|||++. ++.++++++.|+..|+.+..+|+. ....++.|..|++++||.. .++-||+|+| .+.++|.
T Consensus 338 gLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF 412 (1187)
T COG1110 338 GLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVF 412 (1187)
T ss_pred eEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEE
Confidence 5899999 999999999999999999999984 2677999999999999874 5899999999 6789999
Q ss_pred ecCC
Q psy18034 74 YNFP 77 (251)
Q Consensus 74 ~d~P 77 (251)
|+.|
T Consensus 413 ~GvP 416 (1187)
T COG1110 413 YGVP 416 (1187)
T ss_pred ecCC
Confidence 9998
No 120
>KOG0920|consensus
Probab=98.51 E-value=1.8e-07 Score=92.08 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=89.7
Q ss_pred EEEEcCcHHHHHHHHHHHHhC-------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEE-
Q psy18034 2 TVVFTATKYHVEYVHKILGLA-------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN- 73 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~-------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~- 73 (251)
+|||-+....+..+.+.|... .+-+..+|+.|+..++..++..--.|..+|+++|++|+-.|.|++|-+||.
T Consensus 416 ILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDs 495 (924)
T KOG0920|consen 416 ILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDS 495 (924)
T ss_pred EEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEec
Confidence 689999999999999999753 256788999999999999999999999999999999999999999999996
Q ss_pred -------ecCCC----------ChhhHHHHhhhcccCCCCceEEEEecCc
Q psy18034 74 -------YNFPC----------KAKLFVHRVGRCARAGRSGVAYSLVSSD 106 (251)
Q Consensus 74 -------~d~P~----------~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 106 (251)
||.-. +...-.||.||+||. +.|.||.+++..
T Consensus 496 G~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 496 GLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred CeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 55432 344457999999996 689999999853
No 121
>KOG0948|consensus
Probab=98.51 E-value=1.3e-07 Score=90.10 Aligned_cols=105 Identities=20% Similarity=0.333 Sum_probs=86.1
Q ss_pred EEEEcCcHHHHHHHHHHHHhCC---------------------------------------CcEEEEcCCCCHHHHHHHH
Q psy18034 2 TVVFTATKYHVEYVHKILGLAG---------------------------------------ISSTYIYSDLDPTARKINA 42 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~---------------------------------------~~~~~i~g~~~~~~r~~~~ 42 (251)
+|||+-+++.|+.++-.+.... -++...|||+-+--++-+-
T Consensus 386 VIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IE 465 (1041)
T KOG0948|consen 386 VIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIE 465 (1041)
T ss_pred eEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHH
Confidence 7999999999999998886441 1356789999888877777
Q ss_pred HHHhcCCceEEEeccccccccccccccEEEE----ecCC----CChhhHHHHhhhcccCCC--CceEEEEecCc
Q psy18034 43 AKFQTGKIRVLVVTDVAARGIDIPSLDAVIN----YNFP----CKAKLFVHRVGRCARAGR--SGVAYSLVSSD 106 (251)
Q Consensus 43 ~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~----~d~P----~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~ 106 (251)
--|..|-+++|.||..++.|+|.|.-++|+- ||-- -+.-.|+|+.|||||.|- .|.+|+++...
T Consensus 466 ILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 466 ILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 7899999999999999999999998887773 3321 356789999999999986 58888888753
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.50 E-value=9.2e-07 Score=85.24 Aligned_cols=103 Identities=26% Similarity=0.221 Sum_probs=84.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC-CceEEEeccccccccccccc------------
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG-KIRVLVVTDVAARGIDIPSL------------ 68 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g-~~~iLv~Td~~~~Gldi~~v------------ 68 (251)
+||.|.|....+.++..|.+.|+++..++..-...+- +++.+ .| .-.|-|||++|+||.||.--
T Consensus 430 VLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA-~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~ 506 (764)
T PRK12326 430 VLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEA-RIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAE 506 (764)
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHH-HHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHH
Confidence 7899999999999999999999999999887443332 22222 34 34689999999999998622
Q ss_pred ---cEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 69 ---DAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 69 ---~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
=+||-...|.|...--|-.||+||-|.+|.+-.|++-++
T Consensus 507 ~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 507 LGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred cCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 179999999999999999999999999999988887554
No 123
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.39 E-value=9.7e-07 Score=85.30 Aligned_cols=91 Identities=22% Similarity=0.294 Sum_probs=76.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcC--CceEEEeccccccccccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTG--KIRVLVVTDVAARGIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g--~~~iLv~Td~~~~Gldi~~v~~VI~ 73 (251)
||||||.+..||+.+.+.|... |--+..|+|+-.+. ...++.|... --+|.|+.|++..|+|+|.|.+++.
T Consensus 428 KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF 505 (875)
T COG4096 428 KTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF 505 (875)
T ss_pred ceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee
Confidence 7999999999999999999876 34467788875543 4446666653 3468888899999999999999999
Q ss_pred ecCCCChhhHHHHhhhcccC
Q psy18034 74 YNFPCKAKLFVHRVGRCARA 93 (251)
Q Consensus 74 ~d~P~~~~~y~qr~GR~gR~ 93 (251)
+-.-.|...|.|++||.-|.
T Consensus 506 ~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 506 DRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhhhhHHHHHHHhcCcccc
Confidence 99999999999999998885
No 124
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.37 E-value=3e-06 Score=83.69 Aligned_cols=103 Identities=26% Similarity=0.269 Sum_probs=84.4
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC-CceEEEecccccccccccc---cc-----EEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG-KIRVLVVTDVAARGIDIPS---LD-----AVI 72 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g-~~~iLv~Td~~~~Gldi~~---v~-----~VI 72 (251)
+||-|.|....+.++..|...|++...++..-. +++..+-+ ..| .-.|.|||++++||.||.- |. +||
T Consensus 571 vLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia-~AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVI 647 (970)
T PRK12899 571 ILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIA-GAGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVI 647 (970)
T ss_pred EEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHH-hcCCCCcEEEeeccccCCcccccCchHHhcCCcEEE
Confidence 789999999999999999999999988888633 33322222 234 3468999999999999852 22 789
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
-...|.|...--|-.||+||-|.+|.+-.|++-++
T Consensus 648 gTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 648 GTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred eeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 99999999999999999999999999998888654
No 125
>KOG1002|consensus
Probab=98.35 E-value=1.8e-06 Score=79.31 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=93.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC-CceEE-EeccccccccccccccEEEEecCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG-KIRVL-VVTDVAARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g-~~~iL-v~Td~~~~Gldi~~v~~VI~~d~P~ 78 (251)
|.|||.......+.+...|.+.|+.|+.+-|+|++.+|...++.|++. .++|+ ++-.+.+-.+|+-..++|+..|+-|
T Consensus 640 KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWW 719 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWW 719 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccc
Confidence 578999999999999999999999999999999999999999999987 66655 5557777789999999999999999
Q ss_pred ChhhHHHHhhhcccCCCC--ceEEEEecCcc
Q psy18034 79 KAKLFVHRVGRCARAGRS--GVAYSLVSSDE 107 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~--g~~i~l~~~~e 107 (251)
+|.--.|...|..|.|+. -.++.|+..+.
T Consensus 720 NpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 720 NPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred cHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 999999999999999974 45667765543
No 126
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.34 E-value=3.8e-06 Score=84.11 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=59.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccccccccccccc--EEEEe
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLD--AVINY 74 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~--~VI~~ 74 (251)
+++|||+|....+.++..|... ++.+ +..+.. ..|..++++|+.++..||++|+.+.||+|+|+.. +||-.
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~ 752 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIP 752 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEe
Confidence 5899999999999999999752 3333 333333 5788999999999999999999999999999665 56656
Q ss_pred cCC
Q psy18034 75 NFP 77 (251)
Q Consensus 75 d~P 77 (251)
.+|
T Consensus 753 ~LP 755 (850)
T TIGR01407 753 RLP 755 (850)
T ss_pred CCC
Confidence 655
No 127
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.31 E-value=3.3e-06 Score=82.13 Aligned_cols=100 Identities=24% Similarity=0.282 Sum_probs=75.7
Q ss_pred HHHHHHHHHhC--CCcEEEEcCCCCH--HHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecC------C----
Q psy18034 12 VEYVHKILGLA--GISSTYIYSDLDP--TARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNF------P---- 77 (251)
Q Consensus 12 ~~~l~~~L~~~--~~~~~~i~g~~~~--~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~------P---- 77 (251)
++.+.+.|... +.++..+.++.+. ..-...++.|.+|+.+|||.|.+++.|.|+|+++.|.-.|. |
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA 572 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA 572 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcch
Confidence 45556666555 6788888888654 33567899999999999999999999999999997664432 2
Q ss_pred --CChhhHHHHhhhcccCCCCceEEEEecCccHHHH
Q psy18034 78 --CKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYY 111 (251)
Q Consensus 78 --~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~ 111 (251)
.....+.|-.||+||.+.+|.++.-....+.+.+
T Consensus 573 ~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i 608 (730)
T COG1198 573 SERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAI 608 (730)
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHH
Confidence 2355678999999999999998876655443333
No 128
>KOG1000|consensus
Probab=98.30 E-value=3.7e-06 Score=77.20 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=96.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCC-ceE-EEeccccccccccccccEEEEecCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGK-IRV-LVVTDVAARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~-~~i-Lv~Td~~~~Gldi~~v~~VI~~d~P~ 78 (251)
|.+|||.-....+.+...+...+++...|.|..+..+|....+.|+..+ +.| +++-.+++.|+++...+.|+...+||
T Consensus 494 KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w 573 (689)
T KOG1000|consen 494 KFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW 573 (689)
T ss_pred eEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC
Confidence 6799999999999999999999999999999999999999999998773 333 34456889999999999999999999
Q ss_pred ChhhHHHHhhhcccCCCCceE--EEEecC--ccHHHHHHHHHHh
Q psy18034 79 KAKLFVHRVGRCARAGRSGVA--YSLVSS--DELCYYLDLLLFL 118 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~g~~--i~l~~~--~e~~~~~~i~~~l 118 (251)
+|.-++|.-.|+.|.|++..+ +.|+.+ .+...+..+...+
T Consensus 574 nPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 574 NPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred CCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 999999999999999997644 233333 3344444555444
No 129
>KOG0388|consensus
Probab=98.27 E-value=4.3e-06 Score=79.63 Aligned_cols=104 Identities=17% Similarity=0.280 Sum_probs=93.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCc-eEEEeccccccccccccccEEEEecCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKI-RVLVVTDVAARGIDIPSLDAVINYNFPCK 79 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~-~iLv~Td~~~~Gldi~~v~~VI~~d~P~~ 79 (251)
++++|+.-....+.+-++|...|+.-..+.|+....+|..++..|+..++ -.|++|.+.+.|||+...+.||.||-.|+
T Consensus 1046 RvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWN 1125 (1185)
T KOG0388|consen 1046 RVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWN 1125 (1185)
T ss_pred eEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCC
Confidence 47899999999999999999999999999999999999999999998755 47899999999999999999999999999
Q ss_pred hhhHHHHhhhcccCCCCce--EEEEec
Q psy18034 80 AKLFVHRVGRCARAGRSGV--AYSLVS 104 (251)
Q Consensus 80 ~~~y~qr~GR~gR~g~~g~--~i~l~~ 104 (251)
|..-.|.+.|+.|.|+... +|-+++
T Consensus 1126 PT~D~QAMDRAHRLGQTrdvtvyrl~~ 1152 (1185)
T KOG0388|consen 1126 PTADQQAMDRAHRLGQTRDVTVYRLIT 1152 (1185)
T ss_pred cchhhHHHHHHHhccCccceeeeeecc
Confidence 9999999999999998654 455544
No 130
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.26 E-value=1.3e-05 Score=78.29 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=77.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHH---------------------HHHHHHHHHhc-CCceEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPT---------------------ARKINAAKFQT-GKIRVL 53 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~---------------------~r~~~~~~F~~-g~~~iL 53 (251)
|++|||.++.+|..+++.|... +.....++++.+.. .....+++|++ +..+||
T Consensus 516 kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~il 595 (667)
T TIGR00348 516 KAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLL 595 (667)
T ss_pred ceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEE
Confidence 6899999999999999988665 23455666654332 22468889977 578999
Q ss_pred EeccccccccccccccEEEEecCCCChhhHHHHhhhcccC-C--C-CceEEEEec
Q psy18034 54 VVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARA-G--R-SGVAYSLVS 104 (251)
Q Consensus 54 v~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~-g--~-~g~~i~l~~ 104 (251)
|++|.+..|.|.|.+++++-.-+-.+ ..++|.+||+.|. + + .|..+-++.
T Consensus 596 IVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 596 IVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred EEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 99999999999999998887664454 4689999999994 3 2 244444444
No 131
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.21 E-value=1.7e-05 Score=79.25 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=69.5
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEE----Eec----CCCChhhHHHHhhhcccCCCC-
Q psy18034 26 STYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI----NYN----FPCKAKLFVHRVGRCARAGRS- 96 (251)
Q Consensus 26 ~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI----~~d----~P~~~~~y~qr~GR~gR~g~~- 96 (251)
+...|++|=+..+..+-.-|..|.++|+.+|.+++.|+|.|.-++|+ .+| -+-++..|.|..||+||.|..
T Consensus 447 iavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~ 526 (1041)
T COG4581 447 IAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDV 526 (1041)
T ss_pred hhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccc
Confidence 44789999999999999999999999999999999999999877766 233 245789999999999999874
Q ss_pred -ceEEEEecCccH
Q psy18034 97 -GVAYSLVSSDEL 108 (251)
Q Consensus 97 -g~~i~l~~~~e~ 108 (251)
|.++++..+.+.
T Consensus 527 ~G~vI~~~~~~~~ 539 (1041)
T COG4581 527 LGTVIVIEPPFES 539 (1041)
T ss_pred cceEEEecCCCCC
Confidence 777777655443
No 132
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.21 E-value=5.5e-06 Score=82.33 Aligned_cols=104 Identities=23% Similarity=0.249 Sum_probs=84.4
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc---cc-----cEEEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIP---SL-----DAVIN 73 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~---~v-----~~VI~ 73 (251)
+||-|.|.+..+.|++.|...|++.-.++......+-..+-++= ..-.|-|||++|+||.||. .| =+||-
T Consensus 631 VLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG--~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIg 708 (1112)
T PRK12901 631 VLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAG--QPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIG 708 (1112)
T ss_pred EEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcC--CCCcEEEeccCcCCCcCcccchhhHHcCCCEEEE
Confidence 68999999999999999999999988888775544433333332 2345889999999999996 22 27888
Q ss_pred ecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 74 YNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 74 ~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
-..|.|..---|-.||+||-|.+|.+-.|++-++
T Consensus 709 TerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 709 TERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred ccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9999999999999999999999999988887544
No 133
>KOG0389|consensus
Probab=98.19 E-value=1.1e-05 Score=77.55 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=97.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCC--ceEEEeccccccccccccccEEEEecCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGK--IRVLVVTDVAARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~--~~iLv~Td~~~~Gldi~~v~~VI~~d~P~ 78 (251)
|++||.......+-|-..|...++.-..+-|...-..|+.++++|...+ .-+|++|-+.+-|||+-..++||-+|+..
T Consensus 779 RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dF 858 (941)
T KOG0389|consen 779 RVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDF 858 (941)
T ss_pred EEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCC
Confidence 5899999999999999999999999999999999999999999998774 34789999999999999999999999999
Q ss_pred ChhhHHHHhhhcccCCCCc--eEEEEecCccHH
Q psy18034 79 KAKLFVHRVGRCARAGRSG--VAYSLVSSDELC 109 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~g--~~i~l~~~~e~~ 109 (251)
+|-.=.|.-.||.|.|+.. .++.|++..-+.
T Consensus 859 NP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 859 NPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred CCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 9999999999999999865 456778776543
No 134
>KOG0391|consensus
Probab=98.17 E-value=1.5e-05 Score=79.53 Aligned_cols=106 Identities=18% Similarity=0.341 Sum_probs=93.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCC--ceEEEeccccccccccccccEEEEecCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGK--IRVLVVTDVAARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~--~~iLv~Td~~~~Gldi~~v~~VI~~d~P~ 78 (251)
+++||+.-....+-|-..|..+|+.-..+.|...-++|...++.|+... ...+++|-..+-|||+-+.+.||.||--|
T Consensus 1278 RvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDw 1357 (1958)
T KOG0391|consen 1278 RVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDW 1357 (1958)
T ss_pred eEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCC
Confidence 5899999999999999999999999999999999999999999998874 35778899999999999999999999999
Q ss_pred ChhhHHHHhhhcccCCCCc--eEEEEecCc
Q psy18034 79 KAKLFVHRVGRCARAGRSG--VAYSLVSSD 106 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~g--~~i~l~~~~ 106 (251)
|+.---|.-.|+.|.|+.. ..|-|++..
T Consensus 1358 NPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1358 NPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9988888888888888754 446777654
No 135
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.14 E-value=8.2e-06 Score=65.94 Aligned_cols=74 Identities=26% Similarity=0.341 Sum_probs=55.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC----CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc--cccccccccc--ccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG----ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD--VAARGIDIPS--LDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~----~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td--~~~~Gldi~~--v~~VI 72 (251)
.++||++|....+.+.+.++..+ +.+ ... +..++...++.|+.+.-.||+++. .+.+|+|+|+ ++.||
T Consensus 11 ~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v-~~q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 11 GVLVFFPSYRRLEKVYERLKERLEEKGIPV-FVQ---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp EEEEEESSHHHHHHHHTT-TSS-E-ETSCE-EES---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhhccccccee-eec---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 37999999999999999998763 322 222 245778899999999999999998 9999999994 77899
Q ss_pred EecCCC
Q psy18034 73 NYNFPC 78 (251)
Q Consensus 73 ~~d~P~ 78 (251)
-..+|.
T Consensus 87 i~glPf 92 (167)
T PF13307_consen 87 IVGLPF 92 (167)
T ss_dssp EES---
T ss_pred ecCCCC
Confidence 888873
No 136
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.13 E-value=9.1e-06 Score=80.16 Aligned_cols=103 Identities=23% Similarity=0.267 Sum_probs=83.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC-CceEEEeccccccccccc--------------
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG-KIRVLVVTDVAARGIDIP-------------- 66 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g-~~~iLv~Td~~~~Gldi~-------------- 66 (251)
+||-|.|....+.|+..|...|++.-.++.... +++..+-+ +.| .-.|-|||++|+||.||.
T Consensus 452 VLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~ 528 (913)
T PRK13103 452 VLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALEN 528 (913)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhh
Confidence 789999999999999999999999887877644 33333333 345 446899999999999994
Q ss_pred ------------------cc-----cEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 67 ------------------SL-----DAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 67 ------------------~v-----~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
.| =+||--..|.|..-=-|-.||+||-|.+|.+-.|++-++
T Consensus 529 ~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 529 PTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 11 178888899999999999999999999999988887644
No 137
>KOG1123|consensus
Probab=98.08 E-value=2.6e-05 Score=71.97 Aligned_cols=106 Identities=25% Similarity=0.401 Sum_probs=83.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC-CceEEEeccccccccccccccEEEEecCC-C
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG-KIRVLVVTDVAARGIDIPSLDAVINYNFP-C 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g-~~~iLv~Td~~~~Gldi~~v~~VI~~d~P-~ 78 (251)
|+|||..........+-.| .-.+++|..+|.+|.++++.|+-. .++-+..+.|+...+|+|..+++|+..-- .
T Consensus 545 KiIVFsDnvfALk~YAikl-----~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G 619 (776)
T KOG1123|consen 545 KIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG 619 (776)
T ss_pred eEEEEeccHHHHHHHHHHc-----CCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc
Confidence 6899987766555555544 345899999999999999999976 67888888899999999999999997754 5
Q ss_pred ChhhHHHHhhhcccCCCC------ceEEEEecCccHHHH
Q psy18034 79 KAKLFVHRVGRCARAGRS------GVAYSLVSSDELCYY 111 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~------g~~i~l~~~~e~~~~ 111 (251)
|...-.||.||.-|+.+. ...|++++.+...++
T Consensus 620 SRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 620 SRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred chHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 677788999999997432 356888887654433
No 138
>KOG0949|consensus
Probab=98.07 E-value=1.2e-05 Score=78.95 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=68.2
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEec-CCCChhhHHHHhhhcccCCC--CceEEEE
Q psy18034 26 STYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYN-FPCKAKLFVHRVGRCARAGR--SGVAYSL 102 (251)
Q Consensus 26 ~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d-~P~~~~~y~qr~GR~gR~g~--~g~~i~l 102 (251)
+.+.|++|....|..+---||.|...||++|..++.|||.|.-++|+--| +--+|-.|-|++|||||.|- .|.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 45689999999999999999999999999999999999999888888766 45678999999999999885 4666554
Q ss_pred ecC
Q psy18034 103 VSS 105 (251)
Q Consensus 103 ~~~ 105 (251)
--|
T Consensus 1045 giP 1047 (1330)
T KOG0949|consen 1045 GIP 1047 (1330)
T ss_pred eCc
Confidence 333
No 139
>KOG0926|consensus
Probab=98.02 E-value=2.3e-06 Score=82.36 Aligned_cols=80 Identities=28% Similarity=0.380 Sum_probs=68.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEE--------ecCCCC----------hhhHHHH
Q psy18034 25 SSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN--------YNFPCK----------AKLFVHR 86 (251)
Q Consensus 25 ~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~--------~d~P~~----------~~~y~qr 86 (251)
-|..+|+-++.+++.++++.--.|..-++|+|+||...+.||++.+||. ||--.. ..+--||
T Consensus 606 yvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQR 685 (1172)
T KOG0926|consen 606 YVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQR 685 (1172)
T ss_pred EEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchh
Confidence 3778899999999999999999999999999999999999999999996 443332 3334599
Q ss_pred hhhcccCCCCceEEEEecC
Q psy18034 87 VGRCARAGRSGVAYSLVSS 105 (251)
Q Consensus 87 ~GR~gR~g~~g~~i~l~~~ 105 (251)
+||+||.| .|.||-+++.
T Consensus 686 AGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 686 AGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred ccccCCCC-CCceeehhhh
Confidence 99999987 8999999874
No 140
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.89 E-value=9.6e-05 Score=72.80 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=49.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHH-HHHHHHhcC-CceEEEeccccccccccc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARK-INAAKFQTG-KIRVLVVTDVAARGIDIP 66 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~-~~~~~F~~g-~~~iLv~Td~~~~Gldi~ 66 (251)
+||-|.|....+.++..|...|++...++..-...+++ +++.+ .| .-.|-|||++|+||.||.
T Consensus 427 VLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 427 ILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred EEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 78999999999999999999999999999863222233 23333 34 446899999999999984
No 141
>KOG0386|consensus
Probab=97.88 E-value=5.2e-05 Score=74.73 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=91.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCc---eEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKI---RVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~---~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
+++.||.-..-.+-+-.+|.-.++.-..+-|....++|-..++.|..-.. -+|..|.+.+.|+|++..+.||-||.-
T Consensus 728 RVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsd 807 (1157)
T KOG0386|consen 728 RVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSD 807 (1157)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCC
Confidence 46788888888888888998889999999999999999999999998754 478999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCceEEEEe
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVAYSLV 103 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~i~l~ 103 (251)
|+|....|+--|+.|.|+...+-++.
T Consensus 808 wnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 808 WNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred CCchhHHHHHHHHHHhhchhheeeee
Confidence 99999999999999999976654443
No 142
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.84 E-value=0.00037 Score=64.41 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=94.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc--cccccccccccEEEEecCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV--AARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~--~~~Gldi~~v~~VI~~d~P~ 78 (251)
++|||++|--+--.|..+|+..++..+.+|--.++.+..+.-..|..|+.++|+.|.= .=+-..+.++.+||.|.+|.
T Consensus 302 ~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~ 381 (442)
T PF06862_consen 302 GTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPE 381 (442)
T ss_pred cEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCC
Confidence 5899999999999999999999999999999999999999999999999999999963 23456678899999999999
Q ss_pred ChhhHHHHhhhcccCCC------CceEEEEecCccHHHHH
Q psy18034 79 KAKLFVHRVGRCARAGR------SGVAYSLVSSDELCYYL 112 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~------~g~~i~l~~~~e~~~~~ 112 (251)
.|.-|...++-.+.... ...+.++++.-+.-.++
T Consensus 382 ~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LE 421 (442)
T PF06862_consen 382 NPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLE 421 (442)
T ss_pred ChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHH
Confidence 99999988876655433 46778888876655443
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=97.79 E-value=2.6e-05 Score=76.07 Aligned_cols=101 Identities=18% Similarity=0.312 Sum_probs=74.2
Q ss_pred EEEcCcHHHHHHHHHHHHh-----------C--CCcEEE--EcCCCCHHHHHHHHH---HHhcCCceEEEeccccccccc
Q psy18034 3 VVFTATKYHVEYVHKILGL-----------A--GISSTY--IYSDLDPTARKINAA---KFQTGKIRVLVVTDVAARGID 64 (251)
Q Consensus 3 iIF~~t~~~~~~l~~~L~~-----------~--~~~~~~--i~g~~~~~~r~~~~~---~F~~g~~~iLv~Td~~~~Gld 64 (251)
|-||.+.++...+++.+.. . ++.+.+ +.|.|...+|...+. .|...+++||---.++++|+|
T Consensus 464 IaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVD 543 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVD 543 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCC
Confidence 4567666665555554432 1 444544 558899988855443 356678999999999999999
Q ss_pred cccccEEEEecCCCChhhHHHHhhhcccC--CC-CceEEEEe
Q psy18034 65 IPSLDAVINYNFPCKAKLFVHRVGRCARA--GR-SGVAYSLV 103 (251)
Q Consensus 65 i~~v~~VI~~d~P~~~~~y~qr~GR~gR~--g~-~g~~i~l~ 103 (251)
+|.++.||.+|+-.+.-..+|.+||+-|- |+ .|..|+-+
T Consensus 544 VPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 544 VPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred ccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999994 32 35555443
No 144
>KOG1015|consensus
Probab=97.72 E-value=0.00016 Score=71.18 Aligned_cols=101 Identities=19% Similarity=0.264 Sum_probs=86.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----------------------CCcEEEEcCCCCHHHHHHHHHHHhcCC----ceEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----------------------GISSTYIYSDLDPTARKINAAKFQTGK----IRVLV 54 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----------------------~~~~~~i~g~~~~~~r~~~~~~F~~g~----~~iLv 54 (251)
|.|||..+....+.+-..|... |..-..+.|.....+|....+.|.+-. .-.||
T Consensus 1144 KlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LI 1223 (1567)
T KOG1015|consen 1144 KLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLI 1223 (1567)
T ss_pred eeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEE
Confidence 6899999999998888888643 344566788999999999999998753 23889
Q ss_pred eccccccccccccccEEEEecCCCChhhHHHHhhhcccCCCCceEEE
Q psy18034 55 VTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYS 101 (251)
Q Consensus 55 ~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~ 101 (251)
+|-+.+.|+|+-..+.||-||..|+|.--.|-+=|+-|+|+..-+|.
T Consensus 1224 STRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1224 STRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred eeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 99999999999999999999999999999999999999999765543
No 145
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.70 E-value=0.00029 Score=71.36 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=60.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCC--cEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccccccccccc--ccEEEEecC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGI--SSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPS--LDAVINYNF 76 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~--~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~--v~~VI~~d~ 76 (251)
+++||++|....+.+++.|..... ....+.-+++...|..++++|+.++-.||++|+.+.+|+|+|+ +.+||-..+
T Consensus 754 ~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kL 833 (928)
T PRK08074 754 RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRL 833 (928)
T ss_pred CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecC
Confidence 489999999999999999976422 1222222444456788999999998899999999999999995 578887766
Q ss_pred CC
Q psy18034 77 PC 78 (251)
Q Consensus 77 P~ 78 (251)
|.
T Consensus 834 PF 835 (928)
T PRK08074 834 PF 835 (928)
T ss_pred CC
Confidence 63
No 146
>KOG4439|consensus
Probab=97.59 E-value=0.0004 Score=66.52 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=74.9
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC--CceEEE-eccccccccccccccEEEEecCCCChhhHHHHhhh
Q psy18034 13 EYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG--KIRVLV-VTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGR 89 (251)
Q Consensus 13 ~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g--~~~iLv-~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR 89 (251)
.-+...|...|..-..+||....++|..+++.|... ..+|++ .=.+.+-|+|+-+.+|+|..|+-|+|..--|.+.|
T Consensus 760 niv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDR 839 (901)
T KOG4439|consen 760 NIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDR 839 (901)
T ss_pred HHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHH
Confidence 444567777788999999999999999999999864 355554 44677889999999999999999999999999999
Q ss_pred cccCCCCceEE
Q psy18034 90 CARAGRSGVAY 100 (251)
Q Consensus 90 ~gR~g~~g~~i 100 (251)
.-|.|++..++
T Consensus 840 IYR~GQkK~V~ 850 (901)
T KOG4439|consen 840 IYRMGQKKDVF 850 (901)
T ss_pred HHHhcccCceE
Confidence 99999976553
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.58 E-value=0.00081 Score=65.58 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=74.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCCHHHHHHHHHHHhcCCc-eEEEeccccccccccc--cccEEEEecC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLDPTARKINAAKFQTGKI-RVLVVTDVAARGIDIP--SLDAVINYNF 76 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~~~~r~~~~~~F~~g~~-~iLv~Td~~~~Gldi~--~v~~VI~~d~ 76 (251)
+++|||+|....+.+++.+...... ....+|. ..+...+++|+.+.- .++|+|..+++|+|+| .+..||-..+
T Consensus 481 ~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~l 557 (654)
T COG1199 481 GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGL 557 (654)
T ss_pred CEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEec
Confidence 4899999999999999999877542 3344444 344588899988766 8999999999999999 4467887776
Q ss_pred CC------------------------------ChhhHHHHhhhcccCCCCceEEEEec
Q psy18034 77 PC------------------------------KAKLFVHRVGRCARAGRSGVAYSLVS 104 (251)
Q Consensus 77 P~------------------------------~~~~y~qr~GR~gR~g~~g~~i~l~~ 104 (251)
|. -.....|.+||+=|.....-++.++.
T Consensus 558 Pfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 558 PFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 63 24456788999888544433334443
No 148
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.53 E-value=0.00027 Score=61.53 Aligned_cols=77 Identities=18% Similarity=0.349 Sum_probs=58.6
Q ss_pred HHHHHHhcCCceEEEecccccccccccc--------ccEEEEecCCCChhhHHHHhhhcccCCCC-ceEEEEecC---cc
Q psy18034 40 INAAKFQTGKIRVLVVTDVAARGIDIPS--------LDAVINYNFPCKAKLFVHRVGRCARAGRS-GVAYSLVSS---DE 107 (251)
Q Consensus 40 ~~~~~F~~g~~~iLv~Td~~~~Gldi~~--------v~~VI~~d~P~~~~~y~qr~GR~gR~g~~-g~~i~l~~~---~e 107 (251)
...+.|.+|+..|+|.|++++.|+-+.. -++-|-..+||+....+|..||+.|.|+. .-.|.++.. .|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5677899999999999999999998862 23667789999999999999999999985 444544432 34
Q ss_pred HHHHHHHHH
Q psy18034 108 LCYYLDLLL 116 (251)
Q Consensus 108 ~~~~~~i~~ 116 (251)
..+...+.+
T Consensus 132 ~Rfas~va~ 140 (278)
T PF13871_consen 132 RRFASTVAR 140 (278)
T ss_pred HHHHHHHHH
Confidence 444444333
No 149
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.51 E-value=0.0014 Score=65.62 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=56.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc--cccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIP--SLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~--~v~~VI~~d~P 77 (251)
+++|+++|.+..+.+++.|......+ ...|... .+..++++|+.++..||++|+.+.+|+|+| ....||-..+|
T Consensus 649 ~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 649 PILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred CEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCC
Confidence 58999999999999999997665555 4444222 245689999999899999999999999997 34555555555
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.44 E-value=0.0016 Score=64.05 Aligned_cols=73 Identities=25% Similarity=0.329 Sum_probs=56.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CCcEEEEcCCCCHHHHHHHHHHHhc----CCceEEEecccccccccccc--ccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GISSTYIYSDLDPTARKINAAKFQT----GKIRVLVVTDVAARGIDIPS--LDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~~~~~i~g~~~~~~r~~~~~~F~~----g~~~iLv~Td~~~~Gldi~~--v~~VI~ 73 (251)
.++||++|....+.++..|... +.. ...+|.. .+..+++.|++ ++..||++|..+.+|+|+|+ +++||-
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII 611 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVII 611 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEE
Confidence 3799999999999999998753 333 3456643 46677777764 67789999999999999995 788888
Q ss_pred ecCC
Q psy18034 74 YNFP 77 (251)
Q Consensus 74 ~d~P 77 (251)
..+|
T Consensus 612 ~kLP 615 (697)
T PRK11747 612 TKIP 615 (697)
T ss_pred EcCC
Confidence 7766
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.38 E-value=0.0012 Score=65.43 Aligned_cols=63 Identities=27% Similarity=0.341 Sum_probs=49.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHH-HHHHHhcC-CceEEEeccccccccccc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKI-NAAKFQTG-KIRVLVVTDVAARGIDIP 66 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~-~~~~F~~g-~~~iLv~Td~~~~Gldi~ 66 (251)
+||-|.|.+..+.++..|...|++...++..-...+++. ++.+ .| .-.|-|||++|+||.||.
T Consensus 442 VLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 442 VLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred EEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 789999999999999999999999999998632223333 3333 44 346899999999999985
No 152
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.22 E-value=0.00074 Score=67.07 Aligned_cols=48 Identities=23% Similarity=0.087 Sum_probs=36.8
Q ss_pred Eecccccccccccc----------------------c----------cEEEEecCCCChhhHHH--HhhhcccCCCCceE
Q psy18034 54 VVTDVAARGIDIPS----------------------L----------DAVINYNFPCKAKLFVH--RVGRCARAGRSGVA 99 (251)
Q Consensus 54 v~Td~~~~Gldi~~----------------------v----------~~VI~~d~P~~~~~y~q--r~GR~gR~g~~g~~ 99 (251)
++|.+...|+|+|. + ++||.|++-.+...-+| |.||+|| ++.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r---~~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLR---PLRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCC---CcEE
Confidence 67888889999997 5 89999997666666666 7776666 4677
Q ss_pred EEEec
Q psy18034 100 YSLVS 104 (251)
Q Consensus 100 i~l~~ 104 (251)
|.++.
T Consensus 508 yfL~y 512 (814)
T TIGR00596 508 YFLYY 512 (814)
T ss_pred EEEEE
Confidence 77765
No 153
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.15 E-value=0.0075 Score=47.35 Aligned_cols=67 Identities=22% Similarity=0.251 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCC------cEEEEcCCCCHHHHHHHHHHHhcCC-ceEEEecccccccccccc--ccEEEEecCCC
Q psy18034 12 VEYVHKILGLAGI------SSTYIYSDLDPTARKINAAKFQTGK-IRVLVVTDVAARGIDIPS--LDAVINYNFPC 78 (251)
Q Consensus 12 ~~~l~~~L~~~~~------~~~~i~g~~~~~~r~~~~~~F~~g~-~~iLv~Td~~~~Gldi~~--v~~VI~~d~P~ 78 (251)
.+.++..+...+. .-..+.-+.+..+...++++|+... ..||++|.-.++|+|+|+ +++||-..+|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3455556655543 1223333455556788999999765 379999988999999995 56888888773
No 154
>KOG0925|consensus
Probab=97.15 E-value=0.00095 Score=61.70 Aligned_cols=99 Identities=22% Similarity=0.362 Sum_probs=73.4
Q ss_pred EEEEcCcHHHHHHHHHHHHhC---------CCcEEEEcCCCCHHHHHHHHHHHh---cC--CceEEEecccccccccccc
Q psy18034 2 TVVFTATKYHVEYVHKILGLA---------GISSTYIYSDLDPTARKINAAKFQ---TG--KIRVLVVTDVAARGIDIPS 67 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~---------~~~~~~i~g~~~~~~r~~~~~~F~---~g--~~~iLv~Td~~~~Gldi~~ 67 (251)
++||....+..+...+.+... ...|..+| +.+...+++.-. +| ..+|+|+|.++...+.+++
T Consensus 256 ilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidg 331 (699)
T KOG0925|consen 256 ILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDG 331 (699)
T ss_pred EEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeecc
Confidence 689999988888877777643 24677777 333333333221 12 4579999999999999999
Q ss_pred ccEEEEecC------------------CCChhhHHHHhhhcccCCCCceEEEEecC
Q psy18034 68 LDAVINYNF------------------PCKAKLFVHRVGRCARAGRSGVAYSLVSS 105 (251)
Q Consensus 68 v~~VI~~d~------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 105 (251)
+.+||.-++ |-|..+-.||.||+||. ++|.|+-++++
T Consensus 332 iv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 332 IVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred EEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 999997443 67788888999999984 68999999874
No 155
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.97 E-value=0.0084 Score=59.14 Aligned_cols=76 Identities=22% Similarity=0.294 Sum_probs=57.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCC-------cEEEEcCCCCHHHHHHHHHHHhc----CCceEEEec--ccccccccccc-
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGI-------SSTYIYSDLDPTARKINAAKFQT----GKIRVLVVT--DVAARGIDIPS- 67 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~-------~~~~i~g~~~~~~r~~~~~~F~~----g~~~iLv~T--d~~~~Gldi~~- 67 (251)
++||++|....+.+++.+...|. ....+-+. ...++..++++|+. |.-.||.++ ..+++|||+++
T Consensus 525 ~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~ 603 (705)
T TIGR00604 525 IVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDD 603 (705)
T ss_pred EEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCC
Confidence 79999999999999988876532 12222222 12577889999965 455699998 88999999995
Q ss_pred -ccEEEEecCCC
Q psy18034 68 -LDAVINYNFPC 78 (251)
Q Consensus 68 -v~~VI~~d~P~ 78 (251)
+++||-..+|.
T Consensus 604 ~~r~ViivGlPf 615 (705)
T TIGR00604 604 LGRAVIMVGIPY 615 (705)
T ss_pred CCcEEEEEccCC
Confidence 78899899885
No 156
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.95 E-value=0.01 Score=46.68 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCC----cEEEEcCCCCHHHHHHHHHHHhcCCc---eEEEeccc--ccccccccc--ccEEEEecCCC
Q psy18034 12 VEYVHKILGLAGI----SSTYIYSDLDPTARKINAAKFQTGKI---RVLVVTDV--AARGIDIPS--LDAVINYNFPC 78 (251)
Q Consensus 12 ~~~l~~~L~~~~~----~~~~i~g~~~~~~r~~~~~~F~~g~~---~iLv~Td~--~~~Gldi~~--v~~VI~~d~P~ 78 (251)
.+.+++.++..+. ....+-+. ...+....+++|+.... .||+++.- +++|+|+|+ +++||-..+|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGK-DSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECC-CCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4566666765543 22233232 23345788999998654 68888876 899999995 67888888773
No 157
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.62 E-value=0.0077 Score=59.19 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=62.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-cccccccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-AARGIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-~~~Gldi~~v~~VI~ 73 (251)
|++|.++|+.-+.+.++.++.. |+.+..+||+++..+|...++...+|+.+|+|+|.. +...+.+.++.+||-
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 5899999999998887776654 789999999999999999999999999999999974 444677888888774
No 158
>KOG1016|consensus
Probab=96.53 E-value=0.01 Score=57.81 Aligned_cols=102 Identities=16% Similarity=0.190 Sum_probs=85.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc------------------EEEEcCCCCHHHHHHHHHHHhcC---CceEEEecccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS------------------STYIYSDLDPTARKINAAKFQTG---KIRVLVVTDVA 59 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~------------------~~~i~g~~~~~~r~~~~~~F~~g---~~~iLv~Td~~ 59 (251)
|+|||.......+.+-+.|....++ -.-+.|..+..+|++.+++|... ..-+|++|.+.
T Consensus 721 kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag 800 (1387)
T KOG1016|consen 721 KILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAG 800 (1387)
T ss_pred eEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccc
Confidence 5799999999999999988776222 22456778889999999999875 23478889999
Q ss_pred ccccccccccEEEEecCCCChhhHHHHhhhcccCCCCceEEEE
Q psy18034 60 ARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSL 102 (251)
Q Consensus 60 ~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l 102 (251)
..|+|+-..+.++-||.-|++..-.|.+-|+-|.|+...|++.
T Consensus 801 ~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvY 843 (1387)
T KOG1016|consen 801 SLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVY 843 (1387)
T ss_pred cccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEE
Confidence 9999999999999999999999999999999999997766544
No 159
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.52 E-value=0.014 Score=58.91 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=61.8
Q ss_pred EEEcCcHHHHHHHHHHHHhC----C--CcEEEEcCCCCHHHHHHHHHH---H-------------------hc----CCc
Q psy18034 3 VVFTATKYHVEYVHKILGLA----G--ISSTYIYSDLDPTARKINAAK---F-------------------QT----GKI 50 (251)
Q Consensus 3 iIF~~t~~~~~~l~~~L~~~----~--~~~~~i~g~~~~~~r~~~~~~---F-------------------~~----g~~ 50 (251)
+|=+++...+-.++..|-.. + +.+.++|+..+...|..+-+. + ++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 44555556666666665544 3 447788998866655443222 1 12 356
Q ss_pred eEEEeccccccccccccccEEEEecCCCChhhHHHHhhhcccCCCC
Q psy18034 51 RVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRS 96 (251)
Q Consensus 51 ~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~ 96 (251)
.|+|+|.+.+-|+|+ +.+++|- -|.+..+.+||+||+.|.|..
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccccC
Confidence 799999999999998 4555543 367799999999999997753
No 160
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.49 E-value=0.032 Score=54.21 Aligned_cols=78 Identities=22% Similarity=0.186 Sum_probs=59.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC----CceEEEecccccccccc--------c--
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG----KIRVLVVTDVAARGIDI--------P-- 66 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g----~~~iLv~Td~~~~Gldi--------~-- 66 (251)
+++|.+.|....+.+++.|...---...+.|+.+ .+...+++|+.. ...||++|+.+-+|+|+ |
T Consensus 472 ~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~ 549 (636)
T TIGR03117 472 GTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDN 549 (636)
T ss_pred CEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCC
Confidence 4789999999999999999764212345556543 356678889884 78999999999999999 2
Q ss_pred cccEEEEecCCCCh
Q psy18034 67 SLDAVINYNFPCKA 80 (251)
Q Consensus 67 ~v~~VI~~d~P~~~ 80 (251)
.+++||-.-+|..+
T Consensus 550 ~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 550 LLTDLIITCAPFGL 563 (636)
T ss_pred cccEEEEEeCCCCc
Confidence 58889988877433
No 161
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.22 E-value=0.017 Score=56.25 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=61.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc-ccccccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-ARGIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~-~~Gldi~~v~~VI~ 73 (251)
+++|.++|+.-+.++++.++.. |+.+..+||+++..+|...++...+|+.+|+|+|... ...+.+.++.+||-
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 5899999999999888777654 7899999999999999999999999999999999754 34577778887773
No 162
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.16 E-value=0.024 Score=55.73 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=61.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEec
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYN 75 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d 75 (251)
++||.++++..+.++.+.|+.. |..+..+||+++..+|.+.+.+...|+.+|+|+|..+.. +.+.++..||--+
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 5899999999999999999874 788999999999999999999999999999999974322 4456777777433
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.15 E-value=0.0076 Score=59.44 Aligned_cols=102 Identities=25% Similarity=0.225 Sum_probs=74.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccccccccccccc-----------E
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLD-----------A 70 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~-----------~ 70 (251)
+||-+.+.+..+.+++.|.+.|++...+...-. +++..+-++.-..-.+-|||++|+||.||.--. +
T Consensus 432 vLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~ 509 (822)
T COG0653 432 VLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLH 509 (822)
T ss_pred EEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcE
Confidence 688889999999999999999999888877755 444444444333335779999999999985222 3
Q ss_pred EEEecCCCChhhHHHHhhhcccCCCCceEEEEecC
Q psy18034 71 VINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSS 105 (251)
Q Consensus 71 VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 105 (251)
||--.--.|..---|-.||+||.|-+|.+--+++-
T Consensus 510 VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSl 544 (822)
T COG0653 510 VIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 544 (822)
T ss_pred EEecccchhhHHHHHhhcccccCCCcchhhhhhhh
Confidence 55444444444445889999999999987666553
No 164
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=96.01 E-value=0.0042 Score=42.07 Aligned_cols=47 Identities=19% Similarity=0.409 Sum_probs=39.0
Q ss_pred HHHHHHHhhHhhHHHHHHhHHHHHHHHhcCCCC-chhhhhhhhcccccccc
Q psy18034 154 EIMNWVELDADMEGIQKTCNNAYKKYVKSRPGA-SVESVKKVKELELATMQ 203 (251)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~r~~~-~~~~i~r~k~l~~~~~~ 203 (251)
.+..++.++. .+.+.|.+|+++|.|++..+ ..+.|++++++|++.++
T Consensus 5 ~l~~~~~~d~---~l~~lA~~Af~SyvraY~~~~~~k~iF~~~~L~l~~~A 52 (65)
T PF13959_consen 5 KLEKLVAKDR---ELKELAQKAFVSYVRAYASHKELKDIFNVKKLDLGHLA 52 (65)
T ss_pred HHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHhhhhhhCCcccCCHHHHH
Confidence 3455555544 57888999999999999999 89999999999998775
No 165
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.93 E-value=0.029 Score=56.88 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=62.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-ccccccccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-VAARGIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-~~~~Gldi~~v~~VI~ 73 (251)
|++|.++|+.-+.+.++.++.. ++.+..++|..+..++...++.++.|+.+|+|+|. .+...+.+.++.+||-
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 5899999999999998877764 67788899999999999999999999999999996 4445677888887774
No 166
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.83 E-value=0.038 Score=52.45 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=60.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~ 73 (251)
++||.+++...+.++++.|+.. |..+..+||+++..+|.+.+.+...|+.+|+|+|..+.. ..++++..||-
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 5799999999999999999865 778999999999999999999999999999999975432 34567777774
No 167
>KOG1001|consensus
Probab=95.81 E-value=0.0019 Score=62.85 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=87.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCC-ce-EEEeccccccccccccccEEEEecCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGK-IR-VLVVTDVAARGIDIPSLDAVINYNFPC 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~-~~-iLv~Td~~~~Gldi~~v~~VI~~d~P~ 78 (251)
|++||+.-..-++.+...|...++....+.|.|....|...+..|..+. .. .+++.-+.+-|+++-..++|+-.|+-|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 5799999888888888888888888889999999999999999999663 23 456778899999999999999999999
Q ss_pred ChhhHHHHhhhcccCCCCceE
Q psy18034 79 KAKLFVHRVGRCARAGRSGVA 99 (251)
Q Consensus 79 ~~~~y~qr~GR~gR~g~~g~~ 99 (251)
+|..-.|.+-|+.|.|+...+
T Consensus 621 np~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred ChHHHHHHHHHHHHhccccee
Confidence 999999999999999987654
No 168
>KOG0701|consensus
Probab=95.71 E-value=0.0065 Score=63.68 Aligned_cols=93 Identities=17% Similarity=0.346 Sum_probs=76.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhCC-CcEEEEcCCCC-----------HHHHHHHHHHHhcCCceEEEecccccccccccccc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAG-ISSTYIYSDLD-----------PTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLD 69 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~-~~~~~i~g~~~-----------~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~ 69 (251)
.|+||+-...+..+.+.++... ..+..+.|.+. +..+.+++..|....+++|++|.++.+|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 4789999888888888877662 23334555433 22467889999999999999999999999999999
Q ss_pred EEEEecCCCChhhHHHHhhhcccCC
Q psy18034 70 AVINYNFPCKAKLFVHRVGRCARAG 94 (251)
Q Consensus 70 ~VI~~d~P~~~~~y~qr~GR~gR~g 94 (251)
.|+.++.|..-..|+|+.||+-+.+
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999976543
No 169
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.32 E-value=0.062 Score=55.74 Aligned_cols=73 Identities=14% Similarity=0.085 Sum_probs=61.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-ccccccccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-VAARGIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-~~~~Gldi~~v~~VI~ 73 (251)
|++|.|+|+.-+.++++.++.. ++.+..++|..+..++..+++..++|..+|+|+|. .+...+.+.++.++|-
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 5899999999999998888753 56788899999999999999999999999999996 4444567778887763
No 170
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.064 Score=51.02 Aligned_cols=68 Identities=15% Similarity=0.361 Sum_probs=54.5
Q ss_pred EEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccc-cccccccE
Q psy18034 2 TVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARG-IDIPSLDA 70 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~G-ldi~~v~~ 70 (251)
+||.++|++.|.++++.+... ++.+..++|+++...+.. +++.| .+|+|+|+ .+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~---~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIE---ALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHH---HHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 799999999999999988765 466889999998776664 44446 99999997 45556 88888888
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 774
No 171
>KOG1513|consensus
Probab=95.00 E-value=0.043 Score=53.87 Aligned_cols=64 Identities=23% Similarity=0.446 Sum_probs=52.1
Q ss_pred HHHHHhcCCceEEEeccccccccccccccEE--------EEecCCCChhhHHHHhhhcccCCCC-ceEEEEec
Q psy18034 41 NAAKFQTGKIRVLVVTDVAARGIDIPSLDAV--------INYNFPCKAKLFVHRVGRCARAGRS-GVAYSLVS 104 (251)
Q Consensus 41 ~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~V--------I~~d~P~~~~~y~qr~GR~gR~g~~-g~~i~l~~ 104 (251)
--++|-.|+..|-|.+.+++-||-++.=..| |-..+||+.+.-+|..||+.|.++- +--|+|+-
T Consensus 849 EKqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlI 921 (1300)
T KOG1513|consen 849 EKQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLI 921 (1300)
T ss_pred HHhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEe
Confidence 3567999999999999999999999855444 4478999999999999999999873 44555543
No 172
>KOG0339|consensus
Probab=94.99 E-value=0.27 Score=46.18 Aligned_cols=67 Identities=10% Similarity=0.160 Sum_probs=51.0
Q ss_pred EEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc------ccccccccccccEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD------VAARGIDIPSLDAV 71 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td------~~~~Gldi~~v~~V 71 (251)
.+|.|+|++.+.++....++. |+.+.++||+++..++...++ -...|+|||+ +--.|+|+..++++
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 478999999999887766655 889999999999877665444 3467999996 22246778777766
Q ss_pred E
Q psy18034 72 I 72 (251)
Q Consensus 72 I 72 (251)
|
T Consensus 375 V 375 (731)
T KOG0339|consen 375 V 375 (731)
T ss_pred E
Confidence 5
No 173
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.82 E-value=0.076 Score=53.46 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=50.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC-----CcEEE-EcCCCCHHHHHHHHHHHhcCCceEEEecccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG-----ISSTY-IYSDLDPTARKINAAKFQTGKIRVLVVTDVA 59 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~-----~~~~~-i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~ 59 (251)
++++.++|..-+.+.++.|.... ..+.. +||.|+.++++..+++|.+|..+|||+|...
T Consensus 127 r~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 127 RVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred eEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 57888999999999998887762 33333 8999999999999999999999999999753
No 174
>KOG2340|consensus
Probab=94.71 E-value=0.18 Score=47.60 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=81.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc--ccccccccccEEEEecCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA--ARGIDIPSLDAVINYNFPCK 79 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~--~~Gldi~~v~~VI~~d~P~~ 79 (251)
++||.++.-.--.+..+++..++.-..+|--.++..-.+.-+-|-.|..++|+-|.-+ -|-.++.+|..||.|.+|.+
T Consensus 555 ~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~ 634 (698)
T KOG2340|consen 555 ILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNN 634 (698)
T ss_pred eEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCC
Confidence 6899999998888999999887666666655555555666678999999999999753 46788899999999999999
Q ss_pred hhhHH---HHhhhcccCCC----CceEEEEecCccHHHH
Q psy18034 80 AKLFV---HRVGRCARAGR----SGVAYSLVSSDELCYY 111 (251)
Q Consensus 80 ~~~y~---qr~GR~gR~g~----~g~~i~l~~~~e~~~~ 111 (251)
|.=|. .+.||+.-.|+ .-.|..++++-+.-.+
T Consensus 635 P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~L 673 (698)
T KOG2340|consen 635 PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRL 673 (698)
T ss_pred cHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHH
Confidence 87765 45566544332 1245566666554433
No 175
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.57 E-value=0.21 Score=48.93 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=52.7
Q ss_pred HHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc----ccccccccccccEEEEecC------C--
Q psy18034 12 VEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD----VAARGIDIPSLDAVINYNF------P-- 77 (251)
Q Consensus 12 ~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td----~~~~Gldi~~v~~VI~~d~------P-- 77 (251)
++.+.+.|... +.++..+.+ ..+++.|. ++.+|||+|. +++ ++++.|+..|. |
T Consensus 440 ter~eeeL~~~FP~~~V~r~d~-------d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDf 506 (665)
T PRK14873 440 ARRTAEELGRAFPGVPVVTSGG-------DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDL 506 (665)
T ss_pred HHHHHHHHHHHCCCCCEEEECh-------HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCc
Confidence 34445555443 445554332 24788996 5999999998 555 35566654442 3
Q ss_pred ----CChhhHHHHhhhcccCCCCceEEEEecCc
Q psy18034 78 ----CKAKLFVHRVGRCARAGRSGVAYSLVSSD 106 (251)
Q Consensus 78 ----~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 106 (251)
.....+.|-.||+||.+..|.++....++
T Consensus 507 RA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 507 RAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred ChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 12455678999999988889888765443
No 176
>KOG0331|consensus
Probab=94.55 E-value=0.19 Score=47.42 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=75.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccc-cccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARG-IDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~G-ldi~~v~~ 70 (251)
.+||-++|++-+.++...+... ++.+.|++|+.+...+...+++ .+.|+|+|+ .+.+| +|+..|++
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccceeE
Confidence 3799999999999999988877 4568999999987765554432 368999995 45555 77888888
Q ss_pred EEE--------ecCCCChhhHHHHhhhcccCCCCceEEEEecCccHHHH
Q psy18034 71 VIN--------YNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYY 111 (251)
Q Consensus 71 VI~--------~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~ 111 (251)
+|- .++-.++...+++++|..| .-...+..-+.+...+
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~r---Qtlm~saTwp~~v~~l 288 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDR---QTLMFSATWPKEVRQL 288 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcc---cEEEEeeeccHHHHHH
Confidence 773 4455678888888888777 2334444446665555
No 177
>PRK14701 reverse gyrase; Provisional
Probab=94.37 E-value=0.12 Score=55.32 Aligned_cols=58 Identities=16% Similarity=0.195 Sum_probs=51.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
+++|.++|+.-+.++++.|+.. ++.+..+||+++..++...++.+++|+.+|||+|+-
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 5899999999999999988873 466788999999999999999999999999999974
No 178
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.25 E-value=0.19 Score=48.68 Aligned_cols=73 Identities=25% Similarity=0.323 Sum_probs=60.5
Q ss_pred CEEEEcCcH----HHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-cccccccccccEEEE
Q psy18034 1 MTVVFTATK----YHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-AARGIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~----~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-~~~Gldi~~v~~VI~ 73 (251)
|+...++|- .|.+.+.++|...|+.+..+.|.+...+|.+++++..+|+++++|.|-+ +...+++.++..||-
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEE
Confidence 456667774 5566667777777999999999999999999999999999999999975 455788888887774
No 179
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=94.09 E-value=0.3 Score=41.80 Aligned_cols=96 Identities=11% Similarity=0.156 Sum_probs=66.7
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCC----ceEEEeccccccccccccccEEEEecCCCChhhHHHHhh
Q psy18034 13 EYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGK----IRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVG 88 (251)
Q Consensus 13 ~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~----~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~G 88 (251)
+.|...+.. ++.+..+.|+.+... -.|..+. ..|+|.-+.++||+.++++.+.....-|.+.+++.||.=
T Consensus 101 ~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgR 174 (239)
T PF10593_consen 101 PELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGR 174 (239)
T ss_pred HHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhh
Confidence 344444444 689999998765533 3454553 789999999999999999999999999999999998864
Q ss_pred hcc-cCCCCceEEEEecCccHHHHHHH
Q psy18034 89 RCA-RAGRSGVAYSLVSSDELCYYLDL 114 (251)
Q Consensus 89 R~g-R~g~~g~~i~l~~~~e~~~~~~i 114 (251)
--| |.|-.+.|=.+.+++-...+..+
T Consensus 175 wFGYR~gY~dl~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 175 WFGYRPGYEDLCRIYMPEELYDWFRHI 201 (239)
T ss_pred cccCCcccccceEEecCHHHHHHHHHH
Confidence 444 44445566555554444444333
No 180
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.74 E-value=0.23 Score=48.77 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=60.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-C-CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEec
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-G-ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYN 75 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~-~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d 75 (251)
++||.++....+..+.+.|+.. | ..+..+|+++++.+|.+.+.+...|+.+|+|.|-.+.- .-+++...||-.+
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEEEEEc
Confidence 5799999999999999999876 4 67999999999999999999999999999999965321 2344666666544
No 181
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=93.72 E-value=0.18 Score=47.04 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=52.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc-cccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAAR-GIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~-Gldi~~v~ 69 (251)
+++|.|+|++-+.++++.++.. +..+..++|+.+...+...++ +..+|+|+|+ .+.+ .+++.+++
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l~ 149 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDALN 149 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHCC
Confidence 4799999999999999887754 578889999998766554333 5678999994 3333 47788888
Q ss_pred EEEE
Q psy18034 70 AVIN 73 (251)
Q Consensus 70 ~VI~ 73 (251)
+||-
T Consensus 150 ~lVi 153 (460)
T PRK11776 150 TLVL 153 (460)
T ss_pred EEEE
Confidence 8874
No 182
>KOG0951|consensus
Probab=93.59 E-value=0.48 Score=49.03 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=77.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----------------------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----------------------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----------------------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
.++||++++++|..++.-|-.. ..++..=|-+|+......+-.-|..|.++++|...-
T Consensus 1361 ~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1361 PAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred CeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 3789999999998877655321 112222278899888888889999999999987644
Q ss_pred cccccccccccEEE----Eec------CCCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHH
Q psy18034 59 AARGIDIPSLDAVI----NYN------FPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLD 113 (251)
Q Consensus 59 ~~~Gldi~~v~~VI----~~d------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~ 113 (251)
..|+-...--+|+ -|| .+.......|++|++.| .|.|+.+.......++++
T Consensus 1441 -~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1441 -CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred -cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH
Confidence 5555543222222 244 35668899999999988 478999988888777755
No 183
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=93.39 E-value=0.22 Score=51.98 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=49.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcE---EEEcCCCCHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISS---TYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~---~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
+++|.++|+.-+.++++.++.. |+.+ ..+||+++..++...++.+.+|..+|+|+|+-
T Consensus 123 ~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 123 RCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 5899999999999998888765 4443 35899999999999999999999999999973
No 184
>KOG0347|consensus
Probab=93.39 E-value=0.19 Score=47.63 Aligned_cols=52 Identities=19% Similarity=0.159 Sum_probs=46.4
Q ss_pred EEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
.+|+++|++-+.++...|... |+.+..+.|||....+++++.+ .-+|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 689999999999999998766 8999999999999988888877 457999996
No 185
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.93 E-value=0.42 Score=44.89 Aligned_cols=58 Identities=26% Similarity=0.305 Sum_probs=53.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
.+||.+++++-+......|...|+.+..++|+.+..++..++.....+..+++++|+-
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 3789999999999999999999999999999999999999999999999999999963
No 186
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.66 E-value=0.59 Score=38.11 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=48.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----cccc-cccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AARG-IDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~G-ldi~~v~~ 70 (251)
++||.|+++..+.+....++.. +..+..++|+.+..+....+. +..+|+|+|.- +.++ .++++++.
T Consensus 71 ~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l~~ 146 (203)
T cd00268 71 QALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKVKY 146 (203)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhCCE
Confidence 4799999999998887766555 678888999988766543332 66789999952 2222 45666666
Q ss_pred EE
Q psy18034 71 VI 72 (251)
Q Consensus 71 VI 72 (251)
+|
T Consensus 147 lI 148 (203)
T cd00268 147 LV 148 (203)
T ss_pred EE
Confidence 66
No 187
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=92.60 E-value=0.72 Score=45.85 Aligned_cols=89 Identities=18% Similarity=0.141 Sum_probs=66.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccc--cEEEEecCC--
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSL--DAVINYNFP-- 77 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v--~~VI~~d~P-- 77 (251)
+-||++|..-++.+++.....+..+..++|.-+..+. +. .++.+|++=|.+..-|+++... +-|.-|=-|
T Consensus 285 IcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~ 358 (824)
T PF02399_consen 285 ICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMS 358 (824)
T ss_pred EEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceEEEEEecCCC
Confidence 5589999999999999999888888888887655522 22 5788999999999999999743 444444222
Q ss_pred --CChhhHHHHhhhcccCCCC
Q psy18034 78 --CKAKLFVHRVGRCARAGRS 96 (251)
Q Consensus 78 --~~~~~y~qr~GR~gR~g~~ 96 (251)
.+..+..|++||+-.....
T Consensus 359 ~gpd~~s~~Q~lgRvR~l~~~ 379 (824)
T PF02399_consen 359 YGPDMVSVYQMLGRVRSLLDN 379 (824)
T ss_pred CCCcHHHHHHHHHHHHhhccC
Confidence 3445678999997665543
No 188
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.40 E-value=0.4 Score=46.85 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=50.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccc-ccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARG-IDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~G-ldi~~v~ 69 (251)
++||.|+|++-+.++++.+... ++.+..+||+.+...+...+ + ...+|+|+|+ .+.++ +++.++.
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~l~ 151 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSKLS 151 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4799999999999998877654 68889999998766544333 2 3578999994 33443 6777887
Q ss_pred EEE
Q psy18034 70 AVI 72 (251)
Q Consensus 70 ~VI 72 (251)
+||
T Consensus 152 ~lV 154 (629)
T PRK11634 152 GLV 154 (629)
T ss_pred EEE
Confidence 776
No 189
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=91.94 E-value=0.67 Score=43.30 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=51.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc------ccccccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD------VAARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td------~~~~Gldi~~v~~ 70 (251)
++||.|+|++-+.++.+.++.. ++.+..++|+.+....... + .+..+|+|+|. .....+++..+++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---L-RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---H-cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 4799999999999988877654 6778889999887654332 2 35779999995 1234567788887
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 153 lVi 155 (456)
T PRK10590 153 LVL 155 (456)
T ss_pred EEe
Confidence 774
No 190
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.72 E-value=0.49 Score=45.65 Aligned_cols=68 Identities=12% Similarity=0.197 Sum_probs=50.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc--cccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAAR--GIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~--Gldi~~v~ 69 (251)
++||.++|++.+.++++.+... ++.+..+||+.+...+...+ .+..+|+|+|. .+.+ .+++..+.
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l----~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~ 161 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL----QQGVDVIIATPGRLIDYVKQHKVVSLHACE 161 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH----hCCCCEEEECHHHHHHHHHhccccchhhee
Confidence 4799999999999998877654 67789999998876655444 34678999995 2222 35666777
Q ss_pred EEE
Q psy18034 70 AVI 72 (251)
Q Consensus 70 ~VI 72 (251)
+||
T Consensus 162 ~lV 164 (572)
T PRK04537 162 ICV 164 (572)
T ss_pred eeE
Confidence 665
No 191
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=91.57 E-value=0.82 Score=44.23 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=52.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
.++|.++++.-+..-...|+..|+.+..+||+++..++..++.....|..++|++|+
T Consensus 55 ~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 55 LTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred cEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 378899999999888889999999999999999999999999999999999999885
No 192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.53 E-value=0.73 Score=42.60 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=50.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc------cccccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV------AARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~------~~~Gldi~~v~~ 70 (251)
++||.++|++-+.++++.+... ++.+..++|+.+...+...+ .+..+|+|+|+- ....+++..+++
T Consensus 75 ~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~ 150 (434)
T PRK11192 75 RILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAVET 150 (434)
T ss_pred eEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccCCE
Confidence 4799999999998887766543 78899999998876655433 346789999961 224567778887
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||.
T Consensus 151 lVi 153 (434)
T PRK11192 151 LIL 153 (434)
T ss_pred EEE
Confidence 774
No 193
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.28 E-value=0.32 Score=48.03 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=56.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI 72 (251)
++||-++-......+...|+.. |.++..+|+++++.+|...+.+.+.|+.+|+|.|-.+- =.-++++..||
T Consensus 247 qvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 247 QVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred EEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-cCchhhccEEE
Confidence 4788888888888887777766 88999999999999999999999999999999986432 12233555555
No 194
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.14 E-value=1.2 Score=41.05 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=49.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----c-ccccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----A-ARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~-~~Gldi~~v~~ 70 (251)
++||.++|++-|.++++.+... |+.+..++|+.+.......+ .+..+|+|+|.- + ...+++..+.+
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~ 160 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL----ESGVDILIGTTGRLIDYAKQNHINLGAIQV 160 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcccccccE
Confidence 4799999999999987766543 78889999987765544332 245789999962 2 22467778887
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
+|-
T Consensus 161 lVi 163 (423)
T PRK04837 161 VVL 163 (423)
T ss_pred EEE
Confidence 774
No 195
>PTZ00110 helicase; Provisional
Probab=89.92 E-value=1 Score=43.23 Aligned_cols=68 Identities=10% Similarity=0.191 Sum_probs=50.1
Q ss_pred EEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccc-cccccccEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARG-IDIPSLDAV 71 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~G-ldi~~v~~V 71 (251)
+||.++|++-|.++.+.+... ++.+.+++|+.+....... .+. ..+|+|+|+ .+.++ +++..+++|
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~---l~~-~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA---LRR-GVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH---HHc-CCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 799999999999998888775 4678889999876554433 333 478999995 34444 567788877
Q ss_pred EE
Q psy18034 72 IN 73 (251)
Q Consensus 72 I~ 73 (251)
|-
T Consensus 282 Vi 283 (545)
T PTZ00110 282 VL 283 (545)
T ss_pred Ee
Confidence 64
No 196
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.17 E-value=1.7 Score=44.89 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=61.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEec-cccccccccccccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVT-DVAARGIDIPSLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~T-d~~~~Gldi~~v~~VI 72 (251)
|+.|.|+|.=-|++-++-++.+ .+.+..+..=-+.++..++++..++|+++|+|.| -+++.++-+.++..+|
T Consensus 645 QVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 645 QVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred eEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 6889999987777777777665 5667778777889999999999999999999999 5778888888888777
No 197
>KOG0921|consensus
Probab=88.51 E-value=0.43 Score=47.74 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=77.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhC-------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEe
Q psy18034 2 TVVFTATKYHVEYVHKILGLA-------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINY 74 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~-------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~ 74 (251)
+++|-+-....-.|...|... ...+...|+.++..+..++.+....|..++++.|..+.--+.+.++..|+.-
T Consensus 646 ilvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~ 725 (1282)
T KOG0921|consen 646 VLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDS 725 (1282)
T ss_pred eeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEee
Confidence 467777777777777666544 3567778998888888888999989999999999999888888877666643
Q ss_pred cC------------------CCChhhHHHHhhhcccCCCCceEEEEec
Q psy18034 75 NF------------------PCKAKLFVHRVGRCARAGRSGVAYSLVS 104 (251)
Q Consensus 75 d~------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~ 104 (251)
+. -.+.-..+||.||+||. ++|.|..+.+
T Consensus 726 cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 726 CKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred eeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 32 13566778999999985 5777777765
No 198
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=88.49 E-value=2 Score=41.84 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=52.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
.+||.++++.-+......|+..|+.+.++++.++..++..++...+.|+.+++++|+
T Consensus 67 ~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 67 LTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 478999999999999999999999999999999999999999999999999999884
No 199
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.05 E-value=2.3 Score=39.95 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=50.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----ccc-ccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AAR-GIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~-Gldi~~v~~ 70 (251)
++||.++|++-+.++++.++.. ++.+..++|+.+..... +.+..+..+|+|+|.- ..+ .+.+..+++
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~ 240 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEV 240 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCcccccCce
Confidence 4799999999999988877654 67888999998755433 4555677899999962 122 355666776
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 241 lVi 243 (475)
T PRK01297 241 MVL 243 (475)
T ss_pred EEe
Confidence 663
No 200
>PRK09401 reverse gyrase; Reviewed
Probab=87.45 E-value=1.4 Score=46.09 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=46.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEE--cCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYI--YSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i--~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
+++|.++|+.-+.++++.++.. ++.+..+ ||+++..++.+..+.+..|..+|+|+|.
T Consensus 125 ~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 125 KSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 5899999999999999998876 3444444 4556677888888999999999999995
No 201
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=87.13 E-value=2.4 Score=44.01 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=49.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhc--CCceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQT--GKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~--g~~~iLv~Td 57 (251)
+||.++++.-+..-...|...|+.+..+.|+++..++..++..+.. |+.+||++|+
T Consensus 503 TLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 503 TLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred EEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 7999999998875556677789999999999999999999998877 8999999997
No 202
>KOG0334|consensus
Probab=84.94 E-value=2 Score=43.56 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=45.8
Q ss_pred EEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccccccccc
Q psy18034 2 TVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDI 65 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi 65 (251)
+||.|+|+..+.++.+.++.. |+.+++++|+.... +.+...+.| ..|+|||. +|-+|+
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~---~qiaelkRg-~eIvV~tp--GRmiD~ 502 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGIS---QQIAELKRG-AEIVVCTP--GRMIDI 502 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHH---HHHHHHhcC-CceEEecc--chhhhh
Confidence 689999999999998877655 89999999997654 456677788 88999985 444444
No 203
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=83.87 E-value=4.9 Score=31.27 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=47.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHH-HHHHHHHHHhcCCceEEEeccc-----cc-ccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPT-ARKINAAKFQTGKIRVLVVTDV-----AA-RGIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~-~r~~~~~~F~~g~~~iLv~Td~-----~~-~Gldi~~v~ 69 (251)
++|+.++++..++.+.+.+... +..+..+||+.+.. +....+ .+..+|+|+|.- .. ..+++..++
T Consensus 46 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 121 (169)
T PF00270_consen 46 RVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINISRLS 121 (169)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGTTES
T ss_pred eEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccccce
Confidence 4789999999999998888776 35788899998754 222222 677899999952 11 123555566
Q ss_pred EEEE
Q psy18034 70 AVIN 73 (251)
Q Consensus 70 ~VI~ 73 (251)
+||-
T Consensus 122 ~iVi 125 (169)
T PF00270_consen 122 LIVI 125 (169)
T ss_dssp EEEE
T ss_pred eecc
Confidence 5553
No 204
>KOG0335|consensus
Probab=83.41 E-value=2.7 Score=39.46 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=48.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccc-cccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARG-IDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~G-ldi~~v~~ 70 (251)
.++|..+|++-|++++..-++. ++.+...+|+.+-. ....+-...++|||||. ++.+| +.++.+.+
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~----~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~ 229 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLG----AQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKF 229 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchh----hhhhhhccCccEEEecCchhhhhhhcceeehhhCcE
Confidence 4799999999999999988766 56788889984332 23345567889999995 45555 55556654
Q ss_pred EE
Q psy18034 71 VI 72 (251)
Q Consensus 71 VI 72 (251)
++
T Consensus 230 ~v 231 (482)
T KOG0335|consen 230 LV 231 (482)
T ss_pred EE
Confidence 44
No 205
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=83.41 E-value=28 Score=33.11 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=81.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CC---cEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc------ccccccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GI---SSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD------VAARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~---~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td------~~~~Gldi~~v~~ 70 (251)
|+|+..+|+--+.+-++.+... |+ .++.++|..++++|...+.. .+|.++|+ +.+--+|+.++.+
T Consensus 60 kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv~~ 134 (542)
T COG1111 60 KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDVSL 134 (542)
T ss_pred eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHceE
Confidence 5788899998888887777665 44 57799999999999876544 57899985 3444489999998
Q ss_pred EEEecCCC--ChhhHHHHhhhcccCCCCce--EEEEecCccHHHHHHHHHHhCCCCeeccC
Q psy18034 71 VINYNFPC--KAKLFVHRVGRCARAGRSGV--AYSLVSSDELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 71 VI~~d~P~--~~~~y~qr~GR~gR~g~~g~--~i~l~~~~e~~~~~~i~~~l~~~~~~~~~ 127 (251)
+|.=..-. .--.|+.-+-.--|....-. +++--...+.....++...||..-.....
T Consensus 135 lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrT 195 (542)
T COG1111 135 LIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRT 195 (542)
T ss_pred EEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEec
Confidence 88543322 22235555544445443322 23333456788888898888876655443
No 206
>KOG0298|consensus
Probab=83.19 E-value=1.5 Score=45.52 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=69.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCce-EEEeccccccccccccccEEEEecCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIR-VLVVTDVAARGIDIPSLDAVINYNFPCK 79 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~-iLv~Td~~~~Gldi~~v~~VI~~d~P~~ 79 (251)
|+|+|+.=-...+.+...+...++....--+ .+.-...+..|+. ++ .|+-+...+-|+|+-...+|+..++--+
T Consensus 1223 kvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN 1297 (1394)
T KOG0298|consen 1223 KVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPILN 1297 (1394)
T ss_pred eEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccccC
Confidence 5788887777777777777666665433322 2234456677765 44 4566778889999999999999999999
Q ss_pred hhhHHHHhhhcccCCCCce
Q psy18034 80 AKLFVHRVGRCARAGRSGV 98 (251)
Q Consensus 80 ~~~y~qr~GR~gR~g~~g~ 98 (251)
+..-.|.+||+.|.|+.-.
T Consensus 1298 ~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1298 PGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred chHHHhhhhhhhhcccccc
Confidence 9999999999999998654
No 207
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=82.83 E-value=2.1 Score=30.14 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=28.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 53 ~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 53 EIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred cEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 4688998877788888999999988888999874
No 208
>KOG0330|consensus
Probab=80.98 E-value=5.1 Score=36.74 Aligned_cols=82 Identities=15% Similarity=0.257 Sum_probs=55.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc-------ccccccccccE
Q psy18034 2 TVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-------ARGIDIPSLDA 70 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~-------~~Gldi~~v~~ 70 (251)
++|.++|++-+.++++.+... |+.+.++-|||+.... ....+ .+.+|||||+-. ..|..+..+.+
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q--~~~L~--kkPhilVaTPGrL~dhl~~Tkgf~le~lk~ 207 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQ--ANQLS--KKPHILVATPGRLWDHLENTKGFSLEQLKF 207 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHH--HHHhh--cCCCEEEeCcHHHHHHHHhccCccHHHhHH
Confidence 789999999999999988877 6889999999975432 23333 356789999732 35666655544
Q ss_pred --------EEEecCCCChhhHHHHh
Q psy18034 71 --------VINYNFPCKAKLFVHRV 87 (251)
Q Consensus 71 --------VI~~d~P~~~~~y~qr~ 87 (251)
+++-|+-...+.++-++
T Consensus 208 LVlDEADrlLd~dF~~~ld~ILk~i 232 (476)
T KOG0330|consen 208 LVLDEADRLLDMDFEEELDYILKVI 232 (476)
T ss_pred HhhchHHhhhhhhhHHHHHHHHHhc
Confidence 44555544444444333
No 209
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=78.99 E-value=6.6 Score=37.39 Aligned_cols=69 Identities=12% Similarity=0.191 Sum_probs=47.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc-ccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAAR-GIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~-Gldi~~v~~ 70 (251)
++||.++|++-+.++.+.++.. ++.+..+.|+.+..+.. ...+. ..+|+|+|+ .+.+ ++++..+.+
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~-~~~IiV~TPgrL~~~l~~~~~~l~~v~~ 273 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ-GVELIVGTPGRLIDLLSKHDIELDNVSV 273 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC-CCCEEEECHHHHHHHHHcCCccchheeE
Confidence 4799999999998887776654 45677777776654432 23333 478999994 3333 567778887
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 274 lVi 276 (518)
T PLN00206 274 LVL 276 (518)
T ss_pred EEe
Confidence 764
No 210
>PRK13766 Hef nuclease; Provisional
Probab=78.90 E-value=7.4 Score=38.89 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=49.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CC---cEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc------cccccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GI---SSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV------AARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~---~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~------~~~Gldi~~v~~ 70 (251)
++||.|+|+..+++..+.++.. +. .+..++|+.+..+|...+. ..+|+|+|.- ...-+++..++.
T Consensus 60 ~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~~~~l 134 (773)
T PRK13766 60 KVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLEDVSL 134 (773)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 5799999999998888777764 33 7888999999888765543 3479999952 233456667777
Q ss_pred EEEe
Q psy18034 71 VINY 74 (251)
Q Consensus 71 VI~~ 74 (251)
||--
T Consensus 135 iVvD 138 (773)
T PRK13766 135 LIFD 138 (773)
T ss_pred EEEE
Confidence 7743
No 211
>KOG0329|consensus
Probab=78.41 E-value=5 Score=34.80 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=49.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc----cc--ccccccccccE
Q psy18034 2 TVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD----VA--ARGIDIPSLDA 70 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td----~~--~~Gldi~~v~~ 70 (251)
++|.|.|++-+-.+....... +.+++.++|+|+-+.-++.++. --.|+|+|+ ++ .+-+++..+.+
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vkh 188 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVKH 188 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcce
Confidence 689999999888886655443 6889999999988776666554 567999997 22 23566667766
Q ss_pred EE
Q psy18034 71 VI 72 (251)
Q Consensus 71 VI 72 (251)
-+
T Consensus 189 Fv 190 (387)
T KOG0329|consen 189 FV 190 (387)
T ss_pred ee
Confidence 55
No 212
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=78.32 E-value=6.6 Score=37.99 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=44.9
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
|||-.+-..--+.=.+.|+..|+.++++++.++.++|..++.+...|.+++|-.++
T Consensus 60 TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 60 TLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred EEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 45555554444444566778899999999999999999999999999999987654
No 213
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=78.17 E-value=7.2 Score=38.81 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=40.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHh----CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGL----AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
++.|.++|..-|...++.+.. .|+.+.++.|+++..+|.... ..+|+++|..
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y------~~dIvyGT~~ 154 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY------ACDITYGTNN 154 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc------CCCEEEECCC
Confidence 478899998777766665544 489999999999988776544 2689999975
No 214
>KOG0338|consensus
Probab=78.09 E-value=6.1 Score=37.52 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=42.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++||.|+|++-+-+++...+.. .+.++..-||++-..++.++.. .-+|+|||+
T Consensus 254 RVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATP 310 (691)
T KOG0338|consen 254 RVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATP 310 (691)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecc
Confidence 5899999999888777766554 6788888899998888877654 467999997
No 215
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=77.16 E-value=3.1 Score=29.85 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=27.7
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
++++|.+-......+..|+..|+.+..+.|++.
T Consensus 64 ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 64 VTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred EEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 688898877788888899999998888888874
No 216
>KOG0350|consensus
Probab=77.06 E-value=7.2 Score=36.90 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=51.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHH-HHHHHHHHHhcCCceEEEeccc-------cccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPT-ARKINAAKFQTGKIRVLVVTDV-------AARGIDIPSL 68 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~-~r~~~~~~F~~g~~~iLv~Td~-------~~~Gldi~~v 68 (251)
+++|.++|+.-+-+++..+... |..++...|.-+-+ +..+....-....++|||+|+. .-.|+|+.++
T Consensus 217 RavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~L 296 (620)
T KOG0350|consen 217 RAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHL 296 (620)
T ss_pred EEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhc
Confidence 5899999999999999999876 66676677755433 2233333344446799999973 2457777777
Q ss_pred cEEEE
Q psy18034 69 DAVIN 73 (251)
Q Consensus 69 ~~VI~ 73 (251)
.++|-
T Consensus 297 rfLVI 301 (620)
T KOG0350|consen 297 RFLVI 301 (620)
T ss_pred eEEEe
Confidence 77663
No 217
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=76.33 E-value=6.7 Score=39.17 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=48.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC---CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-cccccc---------cccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA---GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-VAARGI---------DIPS 67 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~---~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-~~~~Gl---------di~~ 67 (251)
++|+.++|++-+......|+.. ++.+..++|+.+..+|..+ + ...+|+|+|+ .+-.++ .+.+
T Consensus 83 ~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~-~~~~IivtTPd~L~~~~L~~~~~~~~~l~~ 157 (742)
T TIGR03817 83 TALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----R-EHARYVLTNPDMLHRGILPSHARWARFLRR 157 (742)
T ss_pred EEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----h-cCCCEEEEChHHHHHhhccchhHHHHHHhc
Confidence 4789999999999999888876 5778889999987766432 2 3368999995 332221 2557
Q ss_pred ccEEEE
Q psy18034 68 LDAVIN 73 (251)
Q Consensus 68 v~~VI~ 73 (251)
+++||-
T Consensus 158 l~~vVi 163 (742)
T TIGR03817 158 LRYVVI 163 (742)
T ss_pred CCEEEE
Confidence 777773
No 218
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=75.72 E-value=3.6 Score=28.63 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=29.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
.+||||.+...+..++..|...|+. +..+.|++.
T Consensus 58 ~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 58 PVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred eEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 3789999988889999999999987 778888874
No 219
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=74.35 E-value=9.1 Score=37.63 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=42.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHh----CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGL----AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDI 65 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi 65 (251)
+++|.++|+.-|...++.+.. .|+.+.++.|++++.+|.... .++|+++|.- .-|.|.
T Consensus 146 ~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~FDy 207 (656)
T PRK12898 146 PVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELVFDY 207 (656)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chhhhh
Confidence 478999998888766666554 489999999999987666532 4678888852 345444
No 220
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=73.37 E-value=7.1 Score=27.67 Aligned_cols=34 Identities=9% Similarity=-0.013 Sum_probs=27.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCC-cEEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGI-SSTYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~-~~~~i~g~~~ 34 (251)
++|++|++-..+...+..|+..|+ .+..+.|+|.
T Consensus 58 ~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 58 RYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 368899888888888888888888 4777888863
No 221
>KOG0345|consensus
Probab=72.38 E-value=10 Score=35.62 Aligned_cols=69 Identities=12% Similarity=0.204 Sum_probs=51.1
Q ss_pred EEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc---ccccccc
Q psy18034 2 TVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAAR---GIDIPSL 68 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~---Gldi~~v 68 (251)
++|..+|++-+.++.+.+... ++.+..+-|+++.+ +-++.|++...+|||+|+ ++.+ ++++-.+
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccccc
Confidence 589999999888877766543 67788899996654 457789999999999996 3333 4555577
Q ss_pred cEEEE
Q psy18034 69 DAVIN 73 (251)
Q Consensus 69 ~~VI~ 73 (251)
+++|.
T Consensus 159 e~LVL 163 (567)
T KOG0345|consen 159 EILVL 163 (567)
T ss_pred ceEEe
Confidence 76663
No 222
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=72.10 E-value=10 Score=40.78 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=51.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHh----------------CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----c
Q psy18034 1 MTVVFTATKYHVEYVHKILGL----------------AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----A 59 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~----------------~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~ 59 (251)
++|+.++++.-+..+.+.|+. .++.+...||+.++.+|.+.+ ....+|||+|.- +
T Consensus 39 raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll----~~ppdILVTTPEsL~~LL 114 (1490)
T PRK09751 39 RILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT----RNPPDILITTPESLYLML 114 (1490)
T ss_pred EEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh----cCCCCEEEecHHHHHHHH
Confidence 479999999999888887752 267888999999998887643 346789999963 2
Q ss_pred -ccc-cccccccEEEE
Q psy18034 60 -ARG-IDIPSLDAVIN 73 (251)
Q Consensus 60 -~~G-ldi~~v~~VI~ 73 (251)
.++ ..+.++++||-
T Consensus 115 tsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 115 TSRARETLRGVETVII 130 (1490)
T ss_pred hhhhhhhhccCCEEEE
Confidence 223 35778888884
No 223
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=71.99 E-value=13 Score=37.80 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=40.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHh----CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGL----AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
.+.|.++|..-|...++.+.. .|+.+.+++|+++..+|.... ..+|+++|+-
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 367889998877777766654 489999999999998876544 4789999963
No 224
>KOG0343|consensus
Probab=71.77 E-value=9 Score=36.82 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=40.0
Q ss_pred EEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
+||..+|++-+.+..+.|... ++.+..+-||.+-. .+.-+-...+|||||+
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTP 198 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEech
Confidence 789999999999999999876 47777788886533 2333456789999997
No 225
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=71.04 E-value=5.5 Score=28.24 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=26.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
++++||.+-..+...+..|...|+.+..+.|++.
T Consensus 58 ~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 58 RIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred eEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 3688888876677778888888888767788764
No 226
>KOG0340|consensus
Probab=71.00 E-value=7.3 Score=35.34 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=40.5
Q ss_pred EEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++||++|++-+-.+++.|... +.+++.+.|+|+.-.....+ ...-+++|+|+
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L----~~rPHvVvatP 133 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAIL----SDRPHVVVATP 133 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhc----ccCCCeEecCc
Confidence 589999999999999999877 67899999998764433222 34567888886
No 227
>KOG0342|consensus
Probab=70.92 E-value=11 Score=35.55 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=37.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
.+||.|+|++-+.+.+..+++. ++.+..+-|+.. +..-.++... .+++||||+
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~---~~~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNN---FSVEADKLVK-GCNILIATP 213 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCcc---chHHHHHhhc-cccEEEeCC
Confidence 4799999999888776666544 567777777743 2333344444 789999997
No 228
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=70.33 E-value=50 Score=28.02 Aligned_cols=80 Identities=9% Similarity=0.141 Sum_probs=58.0
Q ss_pred EEEEcCc-----------HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC----CceEEEeccccccccccc
Q psy18034 2 TVVFTAT-----------KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG----KIRVLVVTDVAARGIDIP 66 (251)
Q Consensus 2 ~iIF~~t-----------~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g----~~~iLv~Td~~~~Gldi~ 66 (251)
+||+.+. ..+++.|.+.|+..|+.+ .++-+++..+-.+.+++|... ..+++|+. .++-|.
T Consensus 11 alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG~--- 85 (241)
T smart00115 11 ALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV-HVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHGE--- 85 (241)
T ss_pred EEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCCC---
Confidence 5666664 458999999999999988 467889999999999999874 34455554 677783
Q ss_pred cccEEEEecC-CCChhhHHHHh
Q psy18034 67 SLDAVINYNF-PCKAKLFVHRV 87 (251)
Q Consensus 67 ~v~~VI~~d~-P~~~~~y~qr~ 87 (251)
.+.|+-.|- +-+........
T Consensus 86 -~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 86 -EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred -CCeEEEecCCEEEHHHHHHhc
Confidence 366666664 44555555555
No 229
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=70.32 E-value=4.9 Score=29.06 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=45.5
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHH------------HHHHHHHHHhcCCceEEEecccccccccc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPT------------ARKINAAKFQTGKIRVLVVTDVAARGIDI 65 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~------------~r~~~~~~F~~g~~~iLv~Td~~~~Gldi 65 (251)
.||.+.....+..+.+.|...+..+.+..|.+-.. .+...+.+...+.-.|++|||.=.+|-.+
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~I 76 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGELI 76 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHHHH
Confidence 47889999999999999975556777788865321 23555666656677899999987777443
No 230
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=67.64 E-value=26 Score=25.40 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=37.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC---CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG---ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~---~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
+++|+|++...++++.+.+.... ..+..+++........ ........++++|.-
T Consensus 32 ~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 32 QVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred CEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 57899999999988888776664 6777888876554433 222346677888754
No 231
>PRK13767 ATP-dependent helicase; Provisional
Probab=66.75 E-value=14 Score=37.74 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=47.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHh---------------C-CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc-c---
Q psy18034 1 MTVVFTATKYHVEYVHKILGL---------------A-GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-A--- 60 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~---------------~-~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~-~--- 60 (251)
++|+.+++++-+..+++.|.. . ++.+...||+.++.++...+. ...+|+|+|+-- .
T Consensus 86 ~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 86 YCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTPESLAILL 161 (876)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecHHHHHHHh
Confidence 378999999998877664431 1 567889999999888766443 356899999621 1
Q ss_pred -cc---cccccccEEEE
Q psy18034 61 -RG---IDIPSLDAVIN 73 (251)
Q Consensus 61 -~G---ldi~~v~~VI~ 73 (251)
.+ -.+.++++||-
T Consensus 162 ~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 162 NSPKFREKLRTVKWVIV 178 (876)
T ss_pred cChhHHHHHhcCCEEEE
Confidence 11 13567777774
No 232
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=66.36 E-value=6.1 Score=29.58 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=29.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCC--cEEEEcCCCCH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGI--SSTYIYSDLDP 35 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~--~~~~i~g~~~~ 35 (251)
.+++||++...+...+..|+..|+ .+..+.|++..
T Consensus 74 ~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 74 PIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred cEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHH
Confidence 368899998888888999999999 58889999743
No 233
>KOG1133|consensus
Probab=66.21 E-value=66 Score=31.95 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=49.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCc-------EEEEcCCCCHHHHHHHHHHHhc----CCceEEEe--ccccccccccc--
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGIS-------STYIYSDLDPTARKINAAKFQT----GKIRVLVV--TDVAARGIDIP-- 66 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~-------~~~i~g~~~~~~r~~~~~~F~~----g~~~iLv~--Td~~~~Gldi~-- 66 (251)
+++|++|.+-...+.+.+...|+- .++.-..-+ -.++++.|.. |.-.+|.+ -.-+++|||+.
T Consensus 632 vV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~ 708 (821)
T KOG1133|consen 632 VVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDD 708 (821)
T ss_pred EEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccc
Confidence 689999999888888888766532 222222222 3556666654 34345544 46788999997
Q ss_pred cccEEEEecCCC
Q psy18034 67 SLDAVINYNFPC 78 (251)
Q Consensus 67 ~v~~VI~~d~P~ 78 (251)
-+++|+-.++|.
T Consensus 709 LgRaVvvVGlPy 720 (821)
T KOG1133|consen 709 LGRAVVVVGLPY 720 (821)
T ss_pred cccEEEEeecCC
Confidence 467899888884
No 234
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=66.04 E-value=32 Score=22.99 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=39.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARG 62 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~G 62 (251)
+.++.|....++..+.+.... +..+....|.....+....+.++... ..|++++|.-..|
T Consensus 1 ~~l~ivEg~~da~~~~~~~~~-~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 1 KVLIIVEGPADAIALEKAGGF-GGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred CEEEEEcCHHHHHHHHHhcCC-CEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 468889998888888776642 23455555665555566667776554 6799999854333
No 235
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=65.58 E-value=36 Score=22.47 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=37.5
Q ss_pred CEEEEc-CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC-CceEEE
Q psy18034 1 MTVVFT-ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG-KIRVLV 54 (251)
Q Consensus 1 k~iIF~-~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g-~~~iLv 54 (251)
|+.||. +++..|..+...|+..|+....+.-..+++.+.+..+..... .+..++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 456676 568889999999999999988887777766666555444322 344444
No 236
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=65.28 E-value=7.4 Score=27.89 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=24.4
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
++|+|.+-......+..|...|+. +..+.|++.
T Consensus 64 ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 64 VLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred EEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 678888766666777788888885 666777764
No 237
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=64.81 E-value=8.8 Score=27.95 Aligned_cols=34 Identities=18% Similarity=0.028 Sum_probs=27.0
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCc--EEEEcCCCCH
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGIS--STYIYSDLDP 35 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~--~~~i~g~~~~ 35 (251)
++|||.+-......+..|+..|+. +..+.|+|+.
T Consensus 69 ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 69 IVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred EEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 688998877777778889999984 7788898743
No 238
>PRK02362 ski2-like helicase; Provisional
Probab=64.56 E-value=9.7 Score=37.95 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=47.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC---CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccc-cccccccEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA---GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARG-IDIPSLDAV 71 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~---~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~G-ldi~~v~~V 71 (251)
|+|+.+++++-+.+.++.++.. |+.+..++|+.+.... . -+..+|+|||. ++..+ ..+..+++|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~--l~~~~IiV~Tpek~~~llr~~~~~l~~v~lv 141 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----W--LGDNDIIVATSEKVDSLLRNGAPWLDDITCV 141 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----c--cCCCCEEEECHHHHHHHHhcChhhhhhcCEE
Confidence 5899999999999999888876 7889999998765431 1 24568999995 22222 234677777
Q ss_pred EE
Q psy18034 72 IN 73 (251)
Q Consensus 72 I~ 73 (251)
|-
T Consensus 142 Vi 143 (737)
T PRK02362 142 VV 143 (737)
T ss_pred EE
Confidence 74
No 239
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=64.38 E-value=20 Score=36.74 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=39.9
Q ss_pred EEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++|.++|+.-|...++.+... |+.+.++.|+++..++...+ ..+|+++|+
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTP 191 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTA 191 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 567789998888887777654 78999999999988876443 378999997
No 240
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=63.79 E-value=9.2 Score=27.42 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=24.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
++++|.+...+...+..|...|+. +..+.|++.
T Consensus 68 vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 68 IVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred EEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 677887766677777788888875 666778763
No 241
>KOG0348|consensus
Probab=63.41 E-value=13 Score=35.70 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=50.9
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEc-CC-CCHHHHHHHHHHHhcCCceEEEeccc-------cccccccccccEEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIY-SD-LDPTARKINAAKFQTGKIRVLVVTDV-------AARGIDIPSLDAVI 72 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~-g~-~~~~~r~~~~~~F~~g~~~iLv~Td~-------~~~Gldi~~v~~VI 72 (251)
++|.++|++-|.++++.++...-++.+|- |- |.-+.|..--.+.|.| ++|||+|+- -...+++..+.|||
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG-iNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG-INILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC-ceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 58999999999999999888743333322 11 1112222223344444 899999971 11245556777777
Q ss_pred E--------ecCCCChhhHHHHhhh
Q psy18034 73 N--------YNFPCKAKLFVHRVGR 89 (251)
Q Consensus 73 ~--------~d~P~~~~~y~qr~GR 89 (251)
. .++-.++...+-.++-
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHS 317 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhh
Confidence 4 3344555555555543
No 242
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=63.15 E-value=4.1 Score=35.36 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=46.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc------cccEEEEe
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIP------SLDAVINY 74 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~------~v~~VI~~ 74 (251)
|+||+|+...-.-...+.+++..-.+..+.|.+... -.++.+. .++.+.+|...||..++ ++...|||
T Consensus 64 KaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~ED--p~~i~~~----aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~ 137 (275)
T PF12683_consen 64 KAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHED--PEVISSA----ADIVVNPDEISRGYTIVWAAKKMGAKTFVHY 137 (275)
T ss_dssp EEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S---HHHHHHH----SSEEEE--HHHHHHHHHHHHHHTT-S-EEEE
T ss_pred cEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcCC--HHHHhhc----cCeEeccchhhccHHHHHHHHHcCCceEEEE
Confidence 578888877666666666666666777777765332 2233332 57888899999998887 66789999
Q ss_pred cCCCChh
Q psy18034 75 NFPCKAK 81 (251)
Q Consensus 75 d~P~~~~ 81 (251)
.+|...+
T Consensus 138 sfprhms 144 (275)
T PF12683_consen 138 SFPRHMS 144 (275)
T ss_dssp EETTGGG
T ss_pred echhhcc
Confidence 9998777
No 243
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=62.95 E-value=11 Score=26.78 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=27.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCC-cEEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGI-SSTYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~-~~~~i~g~~~ 34 (251)
+++++|++-..+...+..|.+.|+ .+..+.|++.
T Consensus 56 ~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 56 AIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred cEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 478899998778888889988887 4666888864
No 244
>PTZ00424 helicase 45; Provisional
Probab=62.50 E-value=38 Score=30.59 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=46.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc------ccccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA------ARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~------~~Gldi~~v~~ 70 (251)
++||.++|++-+.++.+.+... +..+....|+....+. ++.+..+ .+|+|+|.-. .+.+.+..+++
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~l 173 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDLKL 173 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcCC-CCEEEECcHHHHHHHHhCCcccccccE
Confidence 4799999999999888877665 3556667787664432 3444433 5899999621 12355677777
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 174 vVi 176 (401)
T PTZ00424 174 FIL 176 (401)
T ss_pred EEE
Confidence 763
No 245
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=60.43 E-value=11 Score=27.10 Aligned_cols=32 Identities=3% Similarity=0.002 Sum_probs=23.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGIS-STYIYSDL 33 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~ 33 (251)
+++||.+-..+...+..|...|+. +..+.|++
T Consensus 69 ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~ 101 (106)
T cd01519 69 LIFYCKAGVRSKAAAELARSLGYENVGNYPGSW 101 (106)
T ss_pred EEEECCCcHHHHHHHHHHHHcCCccceecCCcH
Confidence 678888877777778888888875 55566665
No 246
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=60.21 E-value=11 Score=26.86 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=25.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
++++||++...+...+..|...|+. +..+.|++.
T Consensus 60 ~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 60 DIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred eEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 3678888877777778888888875 667778764
No 247
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=59.85 E-value=1.1e+02 Score=25.94 Aligned_cols=74 Identities=9% Similarity=0.119 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhc---CCceEEEeccccccccccccccEEEEec-CCCChhhHH
Q psy18034 9 KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQT---GKIRVLVVTDVAARGIDIPSLDAVINYN-FPCKAKLFV 84 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~---g~~~iLv~Td~~~~Gldi~~v~~VI~~d-~P~~~~~y~ 84 (251)
..+++.|.+.|+..|+.+ .++.+++..+-.+.+++|.+ .....+++. .++-|.. +.++-.| -+-+.+..+
T Consensus 31 ~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG~~----~~l~~~D~~~v~l~~i~ 104 (243)
T cd00032 31 DVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHGEE----GGIYGTDGDVVPIDEIT 104 (243)
T ss_pred HHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCCCC----CEEEEecCcEEEHHHHH
Confidence 577999999999999988 56788999999999999985 233344333 5777855 6677666 566666776
Q ss_pred HHhh
Q psy18034 85 HRVG 88 (251)
Q Consensus 85 qr~G 88 (251)
+...
T Consensus 105 ~~f~ 108 (243)
T cd00032 105 SLFN 108 (243)
T ss_pred Hhhc
Confidence 6664
No 248
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=59.43 E-value=13 Score=27.21 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=26.7
Q ss_pred CEEEEcCcH--HHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 1 MTVVFTATK--YHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~--~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
.+++||++. ..+...+..|...|+.+..+.|++.
T Consensus 66 ~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 66 LFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred eEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 368888864 3677788888888998888888874
No 249
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=59.42 E-value=8.2 Score=27.45 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=26.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
.++|||.+...+...+..|...|+. +..+.|++.
T Consensus 63 ~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 63 PFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred eEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 3688898877777788888888876 777777763
No 250
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=58.38 E-value=25 Score=35.42 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=37.7
Q ss_pred CEEEEcCcHHHHHHHHHH----HHhCCCcEEEEcCCCC-HHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKI----LGLAGISSTYIYSDLD-PTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~----L~~~~~~~~~i~g~~~-~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++.|.++|..-|..-++. ++..|+.+.++.|+++ +.+|... ...+|+++|.
T Consensus 121 ~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~------y~~dIvygT~ 176 (790)
T PRK09200 121 GVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAI------YEADIIYTTN 176 (790)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHh------cCCCEEEECC
Confidence 467888988766655544 4455999999999999 7777643 2378999984
No 251
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=58.27 E-value=19 Score=36.49 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=36.0
Q ss_pred CEEEEc-CcHHHHHHHHHHHHhCC---------------------------CcEEEEcCCCCHHHHHHHHHHHhcCCceE
Q psy18034 1 MTVVFT-ATKYHVEYVHKILGLAG---------------------------ISSTYIYSDLDPTARKINAAKFQTGKIRV 52 (251)
Q Consensus 1 k~iIF~-~t~~~~~~l~~~L~~~~---------------------------~~~~~i~g~~~~~~r~~~~~~F~~g~~~i 52 (251)
+.+||+ +|+.-++++++.+...+ +.+..++|+.+..... .... ....|
T Consensus 63 ~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---~~l~-~~p~I 138 (844)
T TIGR02621 63 RRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---MLDP-HRPAV 138 (844)
T ss_pred ceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---HhcC-CCCcE
Confidence 467766 99988888777665442 6678899998754332 3332 35689
Q ss_pred EEec
Q psy18034 53 LVVT 56 (251)
Q Consensus 53 Lv~T 56 (251)
+|+|
T Consensus 139 IVgT 142 (844)
T TIGR02621 139 IVGT 142 (844)
T ss_pred EEEC
Confidence 9999
No 252
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=57.87 E-value=16 Score=25.76 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=22.4
Q ss_pred EEEEcCc--HHHHHHHHHHHHhCCC-cEEEEcCCCC
Q psy18034 2 TVVFTAT--KYHVEYVHKILGLAGI-SSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t--~~~~~~l~~~L~~~~~-~~~~i~g~~~ 34 (251)
+++||.+ +..+...+..|...|+ .+..+.|+|.
T Consensus 53 ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 53 IVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred EEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 6778887 4445666777777776 4666777763
No 253
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=57.70 E-value=29 Score=22.36 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=37.1
Q ss_pred EEEEc-CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEe
Q psy18034 2 TVVFT-ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVV 55 (251)
Q Consensus 2 ~iIF~-~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~ 55 (251)
+.+|. +.+..|..+...|...++....+.-.-.+..+.+..+.+..+.+.+++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 34454 5578888888889988888777655445555566667776667776664
No 254
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=56.84 E-value=15 Score=25.70 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=26.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDL 33 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~ 33 (251)
+++|+|++...+...+..|...|+. +..+.|++
T Consensus 58 ~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 58 PVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 3688999888888888999988875 66677775
No 255
>KOG0351|consensus
Probab=56.64 E-value=31 Score=35.48 Aligned_cols=56 Identities=25% Similarity=0.255 Sum_probs=47.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC--CceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG--KIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g--~~~iLv~Td 57 (251)
+||..+-..-.+.....|...++.+.+++|+++..+|..+++.+..| .+++|-.|+
T Consensus 307 tvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 307 TVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred eEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 45666666666666777778899999999999999999999999999 889987775
No 256
>PRK10329 glutaredoxin-like protein; Provisional
Probab=54.93 E-value=68 Score=22.16 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=38.1
Q ss_pred CEEEEc-CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFT-ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~-~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++.+|+ +++..|..+...|.+.|+....+.-+.+++.+..... .-...+.+++.-+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~ 58 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGD 58 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECC
Confidence 356777 5788899999999999998877776666655554332 2233556666544
No 257
>PRK00254 ski2-like helicase; Provisional
Probab=53.93 E-value=25 Score=34.99 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=46.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHh---CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccc-cccccccEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGL---AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARG-IDIPSLDAV 71 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~---~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~G-ldi~~v~~V 71 (251)
|+|+.++++.-+.+.++.+.. .|+.+..++|+.+...+. .+..+|+|+|. .+..+ ..+.++++|
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~-------~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lv 142 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDVKLV 142 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchhh-------hccCCEEEEcHHHHHHHHhCCchhhhcCCEE
Confidence 578999999999999877764 478899999998754321 25678999994 22222 345677777
Q ss_pred EE
Q psy18034 72 IN 73 (251)
Q Consensus 72 I~ 73 (251)
|-
T Consensus 143 Vi 144 (720)
T PRK00254 143 VA 144 (720)
T ss_pred EE
Confidence 74
No 258
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=53.22 E-value=22 Score=26.08 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=25.8
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
+++||.+-..+...+..|...|+......|++.
T Consensus 63 IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 63 VKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 688898877778888888888887666677753
No 259
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=51.92 E-value=24 Score=25.73 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=24.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDL 33 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~ 33 (251)
++++|.+-..+...+..|...|+.....-|++
T Consensus 61 vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 61 VKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 57888887777788888888888755555764
No 260
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=51.61 E-value=57 Score=33.80 Aligned_cols=65 Identities=23% Similarity=0.443 Sum_probs=48.8
Q ss_pred HHHHHHH--hcCCceEEEeccccccccccccccEEEEecCCCChhhHHHHhhhcccC--C-C-CceEEEEec
Q psy18034 39 KINAAKF--QTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARA--G-R-SGVAYSLVS 104 (251)
Q Consensus 39 ~~~~~~F--~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~--g-~-~g~~i~l~~ 104 (251)
......| .....++||.+|.+-.|-|-|.++. +-.|-|--.-.++|.+.|+.|. + + .|..+.++.
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 3344443 3457889999999999999998864 5578888888999999999996 4 2 355555555
No 261
>PLN02160 thiosulfate sulfurtransferase
Probab=49.44 E-value=22 Score=27.36 Aligned_cols=34 Identities=12% Similarity=-0.178 Sum_probs=26.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
.+|+||.+-..+...+..|...|+. +..+.|++.
T Consensus 83 ~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 83 DILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred cEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 3688999988888888889888885 556778764
No 262
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=49.37 E-value=1.2e+02 Score=23.33 Aligned_cols=68 Identities=24% Similarity=0.298 Sum_probs=41.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC-----CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEec-----cccccc-ccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG-----ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVT-----DVAARG-IDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~-----~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~T-----d~~~~G-ldi~~v~ 69 (251)
++++.+++...+..+...+.... .....+++... ...+..+..+...++++| +....+ .+...++
T Consensus 56 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~ 131 (201)
T smart00487 56 RVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVD 131 (201)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCC
Confidence 47899999988888888777654 23444444432 334555666666899998 333333 3444555
Q ss_pred EEE
Q psy18034 70 AVI 72 (251)
Q Consensus 70 ~VI 72 (251)
.+|
T Consensus 132 ~iI 134 (201)
T smart00487 132 LVI 134 (201)
T ss_pred EEE
Confidence 555
No 263
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=49.19 E-value=47 Score=33.68 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=36.9
Q ss_pred EEEEcCcHHHHH----HHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 2 TVVFTATKYHVE----YVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~----~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
+-|.++|..-|. .+...+...|+.+.++.|+|+..+|..... .+|+++|.
T Consensus 125 V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~ 178 (830)
T PRK12904 125 VHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTN 178 (830)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECC
Confidence 446677765444 455555566999999999999998887643 67888886
No 264
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=49.09 E-value=38 Score=34.29 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=54.6
Q ss_pred CceEEEeccccccccccccccEEEEecCCCChhhHHHHhhhcccC--CCCceEE-----------EEecCccHHHHHHHH
Q psy18034 49 KIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARA--GRSGVAY-----------SLVSSDELCYYLDLL 115 (251)
Q Consensus 49 ~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~--g~~g~~i-----------~l~~~~e~~~~~~i~ 115 (251)
..+.+.+--++-+|-|-|+|=.+.-.....|..+=.|.+||.-|. ++.|.-+ ++++..+..++..|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 467888889999999999999999999889999999999998884 3444322 355667777776666
Q ss_pred HHh
Q psy18034 116 LFL 118 (251)
Q Consensus 116 ~~l 118 (251)
.-.
T Consensus 563 kEI 565 (985)
T COG3587 563 KEI 565 (985)
T ss_pred HHH
Confidence 543
No 265
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=48.97 E-value=49 Score=33.74 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=71.2
Q ss_pred CEEEEcCcHH----HHHHHHHHHHhCC--CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-cc----ccccccc---
Q psy18034 1 MTVVFTATKY----HVEYVHKILGLAG--ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-VA----ARGIDIP--- 66 (251)
Q Consensus 1 k~iIF~~t~~----~~~~l~~~L~~~~--~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-~~----~~Gldi~--- 66 (251)
++|++.+|++ +++.+.+.+...+ +.+..++|+.++++|+ ....+..+||++|. ++ -+..+-+
T Consensus 117 ~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpdMLh~~llr~~~~~~~~ 192 (851)
T COG1205 117 RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPDMLHYLLLRNHDAWLWL 192 (851)
T ss_pred cEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCHHHHHHHhccCcchHHHH
Confidence 4688889875 5566777777666 7888999999999887 55567889999984 32 2333322
Q ss_pred --cccEEEE-----ec--CCCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCee
Q psy18034 67 --SLDAVIN-----YN--FPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVL 124 (251)
Q Consensus 67 --~v~~VI~-----~d--~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~ 124 (251)
.+.+||- |+ +=.+....+-|..|..|.+.....+.+.+..--.-....+...+..+..
T Consensus 193 ~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~ 259 (851)
T COG1205 193 LRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEV 259 (851)
T ss_pred HhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCccee
Confidence 3455553 33 1245666667777766654444444333321111122234455666555
No 266
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=48.54 E-value=22 Score=26.41 Aligned_cols=33 Identities=6% Similarity=0.112 Sum_probs=23.9
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
+|+||.+-..+...+..|...|+. +..+.|++.
T Consensus 67 ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 67 VLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred EEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 677887777777778888888875 445677765
No 267
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=48.14 E-value=77 Score=24.90 Aligned_cols=45 Identities=16% Similarity=0.065 Sum_probs=36.8
Q ss_pred CEEEEcCc-------HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHH
Q psy18034 1 MTVVFTAT-------KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKF 45 (251)
Q Consensus 1 k~iIF~~t-------~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F 45 (251)
+++||+.| ...+..+..+|+..++....+.=+|+...+.++.+..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 57788876 8999999999999999888887788887777755544
No 268
>KOG0389|consensus
Probab=47.10 E-value=60 Score=32.72 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=51.1
Q ss_pred EEEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcC--CceEEEeccccccc-cc-c-----ccccEE
Q psy18034 3 VVFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTG--KIRVLVVTDVAARG-ID-I-----PSLDAV 71 (251)
Q Consensus 3 iIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g--~~~iLv~Td~~~~G-ld-i-----~~v~~V 71 (251)
+|.|++- +.+.+-+.+... .+.+..+||. |.+|.++-..+..+ .++|||+|=-++.| -| - ...++|
T Consensus 452 LVVvPsS-TleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~v 528 (941)
T KOG0389|consen 452 LVVVPSS-TLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYV 528 (941)
T ss_pred EEEecch-hHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEE
Confidence 4566653 344444445444 5778899997 58888888888877 78899999544433 11 1 233444
Q ss_pred EEecC-----CCChhhHHHHhhh
Q psy18034 72 INYNF-----PCKAKLFVHRVGR 89 (251)
Q Consensus 72 I~~d~-----P~~~~~y~qr~GR 89 (251)
| ||- -.+...|-|-+-=
T Consensus 529 i-yDEgHmLKN~~SeRy~~LM~I 550 (941)
T KOG0389|consen 529 I-YDEGHMLKNRTSERYKHLMSI 550 (941)
T ss_pred E-ecchhhhhccchHHHHHhccc
Confidence 4 442 2456677776644
No 269
>COG1204 Superfamily II helicase [General function prediction only]
Probab=46.32 E-value=41 Score=33.86 Aligned_cols=111 Identities=20% Similarity=0.074 Sum_probs=68.5
Q ss_pred CEEEEcCcHHHHHHHHHHHH---hCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc----cccc--ccccccccEE
Q psy18034 1 MTVVFTATKYHVEYVHKILG---LAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD----VAAR--GIDIPSLDAV 71 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~---~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td----~~~~--Gldi~~v~~V 71 (251)
|+|--|+++.-+++.++.++ ..|+++...+|+++..... -++.+|+|+|. .+-| +.-+..|++|
T Consensus 78 k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~-------l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lv 150 (766)
T COG1204 78 KVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDER-------LARYDVIVTTPEKLDSLTRKRPSWIEEVDLV 150 (766)
T ss_pred cEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchhh-------hccCCEEEEchHHhhHhhhcCcchhhcccEE
Confidence 56777899999999999888 6699999999998743311 35788999994 3333 2223367766
Q ss_pred EEec-----CC---CChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCe
Q psy18034 72 INYN-----FP---CKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPV 123 (251)
Q Consensus 72 I~~d-----~P---~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~ 123 (251)
|-=+ -+ +..+..+.|.=| .+.. +=.+-....++-+.++..+++.+..
T Consensus 151 ViDEiH~l~d~~RG~~lE~iv~r~~~---~~~~--~rivgLSATlpN~~evA~wL~a~~~ 205 (766)
T COG1204 151 VIDEIHLLGDRTRGPVLESIVARMRR---LNEL--IRIVGLSATLPNAEEVADWLNAKLV 205 (766)
T ss_pred EEeeeeecCCcccCceehhHHHHHHh---hCcc--eEEEEEeeecCCHHHHHHHhCCccc
Confidence 6321 12 345566666533 2211 1111223455566677777776643
No 270
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=46.15 E-value=13 Score=26.66 Aligned_cols=48 Identities=27% Similarity=0.282 Sum_probs=26.9
Q ss_pred cCcHHHHHHHHHHHHhCCCcEEEEc---CCC-CHHHHHHHHHHHhcCCceEEEecc
Q psy18034 6 TATKYHVEYVHKILGLAGISSTYIY---SDL-DPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 6 ~~t~~~~~~l~~~L~~~~~~~~~i~---g~~-~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
+.|..++ +.|++.|+.+..+. +.- ...-+..+++.+++|+++++|.|.
T Consensus 17 ~AT~gTa----~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 17 YATEGTA----KFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp EEEHHHH----HHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE-
T ss_pred EEChHHH----HHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC
Confidence 3445554 45567788744332 222 223344688999999988877764
No 271
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=45.35 E-value=61 Score=33.22 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=39.5
Q ss_pred EEEEcCc----HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 2 TVVFTAT----KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 2 ~iIF~~t----~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
+-|.+++ +.+++.+...+...|+.+.++.+++++.+|...+. ++|+.+|..
T Consensus 126 VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~ 180 (913)
T PRK13103 126 VHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN 180 (913)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEccc
Confidence 3455555 35667777777778999999999999999998766 688888864
No 272
>PRK01172 ski2-like helicase; Provisional
Probab=44.93 E-value=43 Score=32.95 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=45.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHh---CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----cccc-cccccccEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGL---AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AARG-IDIPSLDAV 71 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~---~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~G-ldi~~v~~V 71 (251)
|+|+.++++.-+.+.++.++. .|..+...+|+.+.... + .+..+|+|+|.- ..++ ..+..+++|
T Consensus 67 k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~------~-~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lv 139 (674)
T PRK01172 67 KSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD------F-IKRYDVVILTSEKADSLIHHDPYIINDVGLI 139 (674)
T ss_pred cEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh------h-hccCCEEEECHHHHHHHHhCChhHHhhcCEE
Confidence 578899999999998887764 37788888888764322 1 134689999961 2222 235677777
Q ss_pred EE
Q psy18034 72 IN 73 (251)
Q Consensus 72 I~ 73 (251)
|-
T Consensus 140 Vi 141 (674)
T PRK01172 140 VA 141 (674)
T ss_pred EE
Confidence 73
No 273
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=43.66 E-value=39 Score=22.73 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=25.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
++|++|.+...+...+..|+..|+. +..+-|++.
T Consensus 52 ~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 52 PIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred eEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 3688998888888899999988754 556667753
No 274
>PRK05320 rhodanese superfamily protein; Provisional
Probab=43.41 E-value=31 Score=29.77 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=30.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCCH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLDP 35 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~~ 35 (251)
++++||.+-..++..+..|+..|+. +..+.|++..
T Consensus 177 ~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 177 TVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 3789999989999999999999995 7888999854
No 275
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=42.97 E-value=38 Score=26.33 Aligned_cols=33 Identities=6% Similarity=0.010 Sum_probs=25.4
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCC-cEEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGI-SSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~-~~~~i~g~~~ 34 (251)
+||+|.+...+...+..|...|+ .+..+.|++.
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 67888887777777778887777 6777888853
No 276
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=41.93 E-value=31 Score=35.61 Aligned_cols=70 Identities=20% Similarity=0.203 Sum_probs=53.3
Q ss_pred CceEEEeccccccccccccccEEEEecCCCChhhHHHHhhhcccC--CCCc-------eEEE-EecCccHHHHHHHHHHh
Q psy18034 49 KIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARA--GRSG-------VAYS-LVSSDELCYYLDLLLFL 118 (251)
Q Consensus 49 ~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~--g~~g-------~~i~-l~~~~e~~~~~~i~~~l 118 (251)
..+.+++-.++.+|-|.|++-.+.-..-..|...-.|-+||.-|. .+.| ..++ +++..+..+...|..-.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999999888888899999999885 2223 2233 34556666666665544
No 277
>KOG0352|consensus
Probab=41.14 E-value=54 Score=30.76 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=46.7
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC--CceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG--KIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g--~~~iLv~Td 57 (251)
+|||.+-..-+..=-..|....+++..+.+.|+..+|.+++-+...- .+++|-.|+
T Consensus 64 TIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 64 TIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred EEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 68888888777777778888889999999999999999999998876 456776664
No 278
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=40.82 E-value=1.3e+02 Score=21.42 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=37.1
Q ss_pred CEEEEcCcHH-----HHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccccccc-cccc
Q psy18034 1 MTVVFTATKY-----HVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGI-DIPS 67 (251)
Q Consensus 1 k~iIF~~t~~-----~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gl-di~~ 67 (251)
|+++.|.+-- .+..+.+.|.+.|+.+-..|....+- .... ...+++++|.-+...+ ++|.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~------~~~~-~~~D~iv~t~~~~~~~~~ip~ 69 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI------ETYM-DGVHLICTTARVDRSFGDIPL 69 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHH------hhhc-CCCCEEEECCccccccCCCCE
Confidence 4678887533 24666778888899888888665432 1111 3467888886555544 3553
No 279
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=40.73 E-value=44 Score=23.44 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=24.7
Q ss_pred HHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 17 KILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 17 ~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
+.|+..|+.+..++..... .+..+++.+++|+++++|.|.
T Consensus 24 ~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 24 KFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECC
Confidence 4455678776434333221 123578888889888888775
No 280
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=40.69 E-value=1.7e+02 Score=23.70 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=34.7
Q ss_pred EEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q psy18034 4 VFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLV 54 (251)
Q Consensus 4 IF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv 54 (251)
++-.+...++.+.+.|++. |+.+...||-.++.+...+++.-+....++|+
T Consensus 53 llG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 53 LYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVF 105 (177)
T ss_pred EECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 3345566777777877766 66666668888777777777777666666554
No 281
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=40.15 E-value=21 Score=25.42 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=20.1
Q ss_pred EEEEcCcHHHHHHHHHH-----HHhCCC-cEEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKI-----LGLAGI-SSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~-----L~~~~~-~~~~i~g~~~ 34 (251)
+|+||.+.......+.. |...|+ .+..+.||+.
T Consensus 70 iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 70 IVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred ceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 56777554444444444 677677 6777777753
No 282
>PRK01415 hypothetical protein; Validated
Probab=40.05 E-value=34 Score=29.39 Aligned_cols=35 Identities=9% Similarity=0.020 Sum_probs=30.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCCH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLDP 35 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~~ 35 (251)
++++||.+-..++..+..|++.|+. +..+.|++..
T Consensus 173 ~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 173 KIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQ 208 (247)
T ss_pred eEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHH
Confidence 4789999999999999999999996 7788898743
No 283
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=38.47 E-value=39 Score=24.36 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=23.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
++|+|.+...+...+..|+..|+. +..+.|++.
T Consensus 61 ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 61 VMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred EEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 567787766677777788888775 566777763
No 284
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=37.89 E-value=79 Score=29.04 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=42.0
Q ss_pred cCcHHHHHHHHHHHHhCCC---cEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc
Q psy18034 6 TATKYHVEYVHKILGLAGI---SSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA 59 (251)
Q Consensus 6 ~~t~~~~~~l~~~L~~~~~---~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~ 59 (251)
+.|-.+....++.|++.|. .+++.||-++ ....++.+.|.+|.+.-+++||..
T Consensus 274 I~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 274 IASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 4577788888999998864 4667799988 777777788888888888899864
No 285
>PHA02653 RNA helicase NPH-II; Provisional
Probab=37.43 E-value=91 Score=30.97 Aligned_cols=67 Identities=12% Similarity=-0.007 Sum_probs=42.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~ 73 (251)
+++|-++|++.+..++..+... |.++...+|+++...... +....+++++|.-+. -.++..+++||-
T Consensus 224 ~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t-----~~k~~~Ilv~T~~L~-l~~L~~v~~VVI 297 (675)
T PHA02653 224 PIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINT-----NPKPYGLVFSTHKLT-LNKLFDYGTVII 297 (675)
T ss_pred EEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhc-----ccCCCCEEEEeCccc-ccccccCCEEEc
Confidence 3678889999888887777542 455778899987421111 111458999984220 014567787773
No 286
>KOG0346|consensus
Probab=37.25 E-value=50 Score=31.04 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=39.8
Q ss_pred EEEEcCcHHHHHHHHHHHHhC------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 2 TVVFTATKYHVEYVHKILGLA------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
++|.++|++-|.+++..+... .+.+.-+.++|+...-. ..-.+.-.|+|+|+.
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~pdIvV~TP~ 154 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDLPDIVVATPA 154 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccCCCeEEeChH
Confidence 689999999999999888765 45556667777765433 455677889999973
No 287
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=36.15 E-value=92 Score=26.89 Aligned_cols=83 Identities=7% Similarity=0.163 Sum_probs=53.0
Q ss_pred EEEEcCcHHHHHHHHHHHHhCC---CcEEEEcCC-CCHHHHHHHHHHHhcCCceEEEeccc-----ccc-ccccccccEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLAG---ISSTYIYSD-LDPTARKINAAKFQTGKIRVLVVTDV-----AAR-GIDIPSLDAV 71 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~---~~~~~i~g~-~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~-Gldi~~v~~V 71 (251)
+||.|.+--.|-.|.+.|+... ..++-+.+. +.-++.... .+.+.++|.|+|+. +.. .+.+..+.+|
T Consensus 129 ~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~---L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~i 205 (252)
T PF14617_consen 129 VLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKL---LKKTRVHIAVGTPGRLSKLLENGALSLSNLKRI 205 (252)
T ss_pred EEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHH---HHhCCceEEEeChHHHHHHHHcCCCCcccCeEE
Confidence 7899999989999999998762 444444443 344444444 45578899999972 233 3666676666
Q ss_pred EE------------ecCCCChhhHHHHh
Q psy18034 72 IN------------YNFPCKAKLFVHRV 87 (251)
Q Consensus 72 I~------------~d~P~~~~~y~qr~ 87 (251)
|- +|+|.....+++-.
T Consensus 206 vlD~s~~D~K~~~i~d~~e~~~~l~~lL 233 (252)
T PF14617_consen 206 VLDWSYLDQKKRSIFDIPETREDLWKLL 233 (252)
T ss_pred EEcCCccccccccccccHHHHHHHHHHH
Confidence 62 45665555454433
No 288
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=35.92 E-value=97 Score=31.22 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=36.0
Q ss_pred EEEEcCcHHHHHHHHHHH----HhCCCcEEEEcCC-----CCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKIL----GLAGISSTYIYSD-----LDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L----~~~~~~~~~i~g~-----~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++|.++++.-+...++.+ +..|+.+.+++++ +.+.+|... ...+|+++|+
T Consensus 114 V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~------y~~dIvygTp 172 (762)
T TIGR03714 114 AMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI------YNSDIVYTTN 172 (762)
T ss_pred eEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh------CCCCEEEECc
Confidence 689999998888777766 5558888887764 555555432 2478888886
No 289
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=32.60 E-value=1.5e+02 Score=19.53 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=36.7
Q ss_pred EEEEc-CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEec
Q psy18034 2 TVVFT-ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVT 56 (251)
Q Consensus 2 ~iIF~-~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~T 56 (251)
+.||+ +++..|......|...|++...+.=...+..+.+..+.-..+.+..++..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~ 58 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFN 58 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 44555 45888999999999999988877666556555555444433454555443
No 290
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=32.45 E-value=34 Score=24.37 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=27.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEE-EEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISST-YIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~-~i~g~~~ 34 (251)
++|+|.+-......+..|+..|+... .+.|++.
T Consensus 64 ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 64 IVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred EEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 67889998888899999999998876 6677754
No 291
>KOG1180|consensus
Probab=32.25 E-value=2.1e+02 Score=27.88 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=48.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-ccc----ccccccccEEEEec
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-AAR----GIDIPSLDAVINYN 75 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-~~~----Gldi~~v~~VI~~d 75 (251)
|+.||+.|++.=..-+.-....+++++..|..+-.+. ++.....-+...|+|..- +.. --..+.+.+||.+|
T Consensus 117 k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeea---l~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d 193 (678)
T KOG1180|consen 117 KIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEA---LIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYFD 193 (678)
T ss_pred eEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhh---hhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEec
Confidence 5789999988655556666677999999998887654 444555556666666532 221 13456788888887
Q ss_pred C
Q psy18034 76 F 76 (251)
Q Consensus 76 ~ 76 (251)
.
T Consensus 194 ~ 194 (678)
T KOG1180|consen 194 P 194 (678)
T ss_pred C
Confidence 3
No 292
>PHA03371 circ protein; Provisional
Probab=32.00 E-value=42 Score=28.43 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=28.2
Q ss_pred ccccccccccccEE-EEecCCC-------------ChhhHHHHhhhcccCCCCceEEEEe
Q psy18034 58 VAARGIDIPSLDAV-INYNFPC-------------KAKLFVHRVGRCARAGRSGVAYSLV 103 (251)
Q Consensus 58 ~~~~Gldi~~v~~V-I~~d~P~-------------~~~~y~qr~GR~gR~g~~g~~i~l~ 103 (251)
+++|-+|+|+=+-+ |.-|.+. +.-.|+|.+||+--.|..-..+.+.
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl 88 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYL 88 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEE
Confidence 46778899977665 6444433 4556789999975555333333333
No 293
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.42 E-value=1.7e+02 Score=21.68 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=26.5
Q ss_pred EEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEE
Q psy18034 3 VVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVL 53 (251)
Q Consensus 3 iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iL 53 (251)
+++|-..+.+..+.+.+.+.|.+..+++++. ...+..+..+....+++
T Consensus 59 avv~~~~~~~~~~v~~~~~~g~~~v~~~~g~---~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 59 AVVCVPPDKVPEIVDEAAALGVKAVWLQPGA---ESEELIEAAREAGIRVI 106 (116)
T ss_dssp EEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS-----HHHHHHHHHTT-EEE
T ss_pred EEEEcCHHHHHHHHHHHHHcCCCEEEEEcch---HHHHHHHHHHHcCCEEE
Confidence 4455555666667777777899999999883 33444555555555543
No 294
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.41 E-value=1.2e+02 Score=20.47 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=22.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYI 29 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i 29 (251)
.+|.++|..++-...+.|+..|+++..+
T Consensus 4 ~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 4 YLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 5778888888999999999998766543
No 295
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=31.22 E-value=2e+02 Score=20.54 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=28.7
Q ss_pred CEEEEc------CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHH
Q psy18034 1 MTVVFT------ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAA 43 (251)
Q Consensus 1 k~iIF~------~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~ 43 (251)
+++||. +++-.|..+.++|...|++...+.=..++..+....+
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~ 61 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKE 61 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 578895 3577788888899999887666543334555554433
No 296
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=30.98 E-value=2.6e+02 Score=22.24 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=29.5
Q ss_pred EEcCcHHHHHHHHHHHHhC--CCcEEE-EcCCCCHHHHHHHHHHHhcCCceEEE
Q psy18034 4 VFTATKYHVEYVHKILGLA--GISSTY-IYSDLDPTARKINAAKFQTGKIRVLV 54 (251)
Q Consensus 4 IF~~t~~~~~~l~~~L~~~--~~~~~~-i~g~~~~~~r~~~~~~F~~g~~~iLv 54 (251)
++-.+...++.+.+.|++. |+.++. .||-+...+...+++..+....++++
T Consensus 51 llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 51 LLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred EECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 3445556666666666655 555544 56666666655566666655555544
No 297
>KOG0336|consensus
Probab=30.88 E-value=1.4e+02 Score=27.92 Aligned_cols=52 Identities=13% Similarity=0.264 Sum_probs=36.3
Q ss_pred EEEEcCcHHHHHHHHHHHH---hCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKILG---LAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~---~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++|+.+|++.+..+-.... ..|....|++|+-.. .+.+++.+. ...+++||+
T Consensus 297 ~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR---~eqie~lkr-gveiiiatP 351 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNR---NEQIEDLKR-GVEIIIATP 351 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCc---hhHHHHHhc-CceEEeeCC
Confidence 6899999987766654443 348888999988654 444555544 468889986
No 298
>KOG1132|consensus
Probab=30.02 E-value=4.1e+02 Score=27.37 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=44.7
Q ss_pred EEEEcCcHHHHHHHHHHHHhC-------CCcEEEEcCCCCHHHHHHHHHHHhcC--------CceEEEeccccccccccc
Q psy18034 2 TVVFTATKYHVEYVHKILGLA-------GISSTYIYSDLDPTARKINAAKFQTG--------KIRVLVVTDVAARGIDIP 66 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~-------~~~~~~i~g~~~~~~r~~~~~~F~~g--------~~~iLv~Td~~~~Gldi~ 66 (251)
.++|+++...-+.+....+.. +..-..+-- -+..+=.+++..|.++ -.-..||-.-.++|+|+.
T Consensus 564 ~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEP-r~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDFs 642 (945)
T KOG1132|consen 564 LLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEP-RSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDFS 642 (945)
T ss_pred eEEeccchHHHHHHHHHHHcchHHHHhhcccCceecc-CCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCcc
Confidence 589999887777665544432 112111111 1222333445555443 335678889999999998
Q ss_pred c--ccEEEEecCC
Q psy18034 67 S--LDAVINYNFP 77 (251)
Q Consensus 67 ~--v~~VI~~d~P 77 (251)
+ -+.||-.++|
T Consensus 643 D~~~RaVI~tGlP 655 (945)
T KOG1132|consen 643 DDNGRAVIITGLP 655 (945)
T ss_pred ccCCceeEEecCC
Confidence 4 4578888877
No 299
>PHA02558 uvsW UvsW helicase; Provisional
Probab=29.86 E-value=97 Score=29.37 Aligned_cols=61 Identities=15% Similarity=0.017 Sum_probs=39.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC----CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc--ccccc-cccccccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG----ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD--VAARG-IDIPSLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~----~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td--~~~~G-ldi~~v~~VI 72 (251)
+++|.|+|++-++++.+.|+..+ ..+..+.|+.... ....|+|+|. +...+ ..+..+++||
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-----------~~~~I~VaT~qsl~~~~~~~~~~~~~iI 227 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-----------TDAPIVVSTWQSAVKQPKEWFDQFGMVI 227 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-----------CCCCEEEeeHHHHhhchhhhccccCEEE
Confidence 58999999999999999998753 2333455553321 3457999993 22222 1345677766
No 300
>KOG4284|consensus
Probab=29.60 E-value=1.2e+02 Score=30.21 Aligned_cols=67 Identities=9% Similarity=0.144 Sum_probs=45.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----cc-ccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AA-RGIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~-~Gldi~~v~ 69 (251)
+.+|.++|++-+-.+.+.+... |+.|.++-||.+...- .-+-.+++|+|.|+- .. +-+|...++
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d-----~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vr 169 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLD-----LIRLKQTRIVIGTPGRIAQLVELGAMNMSHVR 169 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhh-----hhhhhhceEEecCchHHHHHHHhcCCCcccee
Confidence 4688999999988888877665 7889999998765432 233456789999862 11 235555665
Q ss_pred EEE
Q psy18034 70 AVI 72 (251)
Q Consensus 70 ~VI 72 (251)
..|
T Consensus 170 lfV 172 (980)
T KOG4284|consen 170 LFV 172 (980)
T ss_pred EEE
Confidence 544
No 301
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.56 E-value=2.6e+02 Score=22.17 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=34.7
Q ss_pred EEcCcHHHHHHHHHHHHhC--CCcEE-EEcCCCCHHHHHHHHHHHhcCCceEEEe
Q psy18034 4 VFTATKYHVEYVHKILGLA--GISST-YIYSDLDPTARKINAAKFQTGKIRVLVV 55 (251)
Q Consensus 4 IF~~t~~~~~~l~~~L~~~--~~~~~-~i~g~~~~~~r~~~~~~F~~g~~~iLv~ 55 (251)
++-.+...++.+.+.|+.. |+.++ ..||-+++.+...+++..+....++++.
T Consensus 53 llG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 53 LLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFV 107 (172)
T ss_pred EEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 3445666677777777776 56655 3456577777788888877776666553
No 302
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=29.49 E-value=1.6e+02 Score=23.40 Aligned_cols=58 Identities=10% Similarity=-0.036 Sum_probs=37.5
Q ss_pred EEEcC--cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccc
Q psy18034 3 VVFTA--TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARG 62 (251)
Q Consensus 3 iIF~~--t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~G 62 (251)
+|||| +.++-+.|.+...-.|--+..-+|+.....+.... -..|-..+||=||-..-|
T Consensus 19 ~VYvNyG~~eDf~~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A--~~~GA~GviIYsDP~d~~ 78 (153)
T cd02131 19 VVDVQYGSVEDLRRIRDNMNVTNQIALLKLGQAPLLYKLSLL--EEAGFGGVLLYVDPCDLP 78 (153)
T ss_pred EEEecCCCHHHHHHHHhCCCccceEEEEeccCcchHHHHHHH--HHCCCeEEEEecChhhcc
Confidence 79999 77777777653332344455667777655544444 445889999999865443
No 303
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=29.08 E-value=3.7e+02 Score=26.60 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=60.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CCc-EEEE--------------------c-----CCCCHHHHHHHHHHHhcCCceEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GIS-STYI--------------------Y-----SDLDPTARKINAAKFQTGKIRVL 53 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~~-~~~i--------------------~-----g~~~~~~r~~~~~~F~~g~~~iL 53 (251)
.+||.++++..+..|+..|+.. +-. |..+ + +.--...|..++.....+.-.|+
T Consensus 56 p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~~~R~~al~~L~~~~~~iv 135 (655)
T TIGR00631 56 PTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRHSATRSLLERRDVIV 135 (655)
T ss_pred CEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHHHHHHHHHHHHHHhCCCeEE
Confidence 3789999999999999999776 223 4433 1 11113467888888887776788
Q ss_pred Eecccccccccccc----ccEEEEecCCCChhhHHHHhhh
Q psy18034 54 VVTDVAARGIDIPS----LDAVINYNFPCKAKLFVHRVGR 89 (251)
Q Consensus 54 v~Td~~~~Gldi~~----v~~VI~~d~P~~~~~y~qr~GR 89 (251)
|||-.+-+|+--|. ....+.-+-..+.+.+..+.-.
T Consensus 136 Vasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv~ 175 (655)
T TIGR00631 136 VASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVE 175 (655)
T ss_pred EEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHHH
Confidence 88755567766553 4456666666777777765543
No 304
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=29.00 E-value=94 Score=23.13 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=21.7
Q ss_pred HHh-CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 19 LGL-AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 19 L~~-~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
|++ .|+.+..+..+ +.+.+..+.+..++|+++.+|.|.
T Consensus 40 L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~ 78 (115)
T cd01422 40 IQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFR 78 (115)
T ss_pred HHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcC
Confidence 444 56666555111 112345677788888877777664
No 305
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=28.66 E-value=64 Score=28.73 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=30.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCCH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLDP 35 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~~ 35 (251)
++++||.+-..+...+.+|...|+. +..+.|++..
T Consensus 173 ~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 173 KVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred eEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 4789999988888999999999995 8889999754
No 306
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=27.52 E-value=99 Score=20.18 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=20.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSD 32 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~ 32 (251)
+.|..+...-.++.+...|...|+.+......
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 35788888999999999999999998654433
No 307
>PRK10638 glutaredoxin 3; Provisional
Probab=27.35 E-value=2e+02 Score=19.46 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=33.4
Q ss_pred EEEEc-CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q psy18034 2 TVVFT-ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLV 54 (251)
Q Consensus 2 ~iIF~-~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv 54 (251)
+.+|. +++..|..+...|...|++...+.=......+....+..-.+.+..++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~ 57 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF 57 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 45666 678889999999999998877665554554454433333223444443
No 308
>KOG0337|consensus
Probab=27.33 E-value=1.5e+02 Score=27.76 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=46.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC----CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc------cccccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG----ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV------AARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~----~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~------~~~Gldi~~v~~ 70 (251)
+++|-++|++-+.+..+.++..| ..++++.|+-+.+++-..+ ++.-++++||+- +..-+++..|.+
T Consensus 92 RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l----~~npDii~ATpgr~~h~~vem~l~l~svey 167 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILL----NENPDIIIATPGRLLHLGVEMTLTLSSVEY 167 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHh----ccCCCEEEecCceeeeeehheeccccceee
Confidence 47889999999988888887773 4666677764444433222 234578898862 334467778888
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
|+.
T Consensus 168 VVf 170 (529)
T KOG0337|consen 168 VVF 170 (529)
T ss_pred eee
Confidence 884
No 309
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=27.28 E-value=4.3e+02 Score=26.06 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=58.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CCc-EEEE--------------------cCCC-----CHHHHHHHHHHHhcCCceEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GIS-STYI--------------------YSDL-----DPTARKINAAKFQTGKIRVL 53 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~~-~~~i--------------------~g~~-----~~~~r~~~~~~F~~g~~~iL 53 (251)
.+||.+++...++.+++.|+.. +-. +..+ +... -...|..++.....++..|+
T Consensus 59 ~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~~R~~~l~~L~~~~~~iv 138 (652)
T PRK05298 59 PTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRHSATKSLLERRDVIV 138 (652)
T ss_pred CEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHHHHHHHHHHHHhCCCEEE
Confidence 3689999999999999999766 323 4433 1111 13468888999888776677
Q ss_pred Eeccccccccccc----cccEEEEecCCCChhhHHHHhhhc
Q psy18034 54 VVTDVAARGIDIP----SLDAVINYNFPCKAKLFVHRVGRC 90 (251)
Q Consensus 54 v~Td~~~~Gldi~----~v~~VI~~d~P~~~~~y~qr~GR~ 90 (251)
|+|-.+..++--| .....+.-+-..+.+.+..+.-..
T Consensus 139 v~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~~ 179 (652)
T PRK05298 139 VASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVDL 179 (652)
T ss_pred EEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHHc
Confidence 7775444665544 334556666677777777665443
No 310
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=27.17 E-value=2.2e+02 Score=19.81 Aligned_cols=42 Identities=19% Similarity=0.034 Sum_probs=29.5
Q ss_pred CEEEEcC------cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHH
Q psy18034 1 MTVVFTA------TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINA 42 (251)
Q Consensus 1 k~iIF~~------t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~ 42 (251)
+++||.. ++..|..+.++|...|+....+.=..+++.+....
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~ 56 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLK 56 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHH
Confidence 4788975 68888999999999998776665444444444433
No 311
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=27.10 E-value=4.1e+02 Score=22.85 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCceEEEeccccccccccccccEEEEecCCCChhhHH
Q psy18034 48 GKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFV 84 (251)
Q Consensus 48 g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~ 84 (251)
....+++-+|...++. .++.+||..+......|.
T Consensus 102 ~~~~l~~iDD~~~~~~---~~D~vin~~~~~~~~~y~ 135 (279)
T TIGR03590 102 FGRKILVIDDLADRPH---DCDLLLDQNLGADASDYQ 135 (279)
T ss_pred hCCeEEEEecCCCCCc---CCCEEEeCCCCcCHhHhc
Confidence 3456777788766555 678999988765444453
No 312
>KOG0341|consensus
Probab=26.66 E-value=95 Score=28.83 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=34.2
Q ss_pred EEEEcCcHHHHHHHHHHH-------HhCCCc---EEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKIL-------GLAGIS---STYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L-------~~~~~~---~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
.+|.|+|++-+.+.++.+ .+.|++ +...-|+++-.+...++.. .++|+|||+
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATP 310 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATP 310 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCc
Confidence 478999998776655544 444543 3344588887776665543 478889886
No 313
>KOG0326|consensus
Probab=26.23 E-value=69 Score=28.94 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=37.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
|++|.++|++-+-..+...... |+.+....|+.+-. ..+++- .+.++++|+|+
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lr--DDI~Rl--~~~VH~~vgTP 211 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR--DDIMRL--NQTVHLVVGTP 211 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccc--cceeee--cCceEEEEcCC
Confidence 5799999999877766655544 78888888986532 222221 45788999985
No 314
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=25.97 E-value=1.4e+02 Score=26.02 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=44.1
Q ss_pred EEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccc
Q psy18034 3 VVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSL 68 (251)
Q Consensus 3 iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v 68 (251)
+|+|....+...|...+.-. -+...+|-.-.++....+++....|+. |.+.+|+.-=|+.-|+.
T Consensus 28 ~i~~EDTR~t~kLL~~~~I~-~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~ISDPG~ 91 (276)
T TIGR00096 28 LFAEEDTRTSKLLLHLGIIA-TPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLISDPGH 91 (276)
T ss_pred EEEecCchhHHHHHHhcCCC-CceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCcCCccH
Confidence 67887777666666555332 245567766666666777777777765 88889988878877754
No 315
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=25.47 E-value=1.4e+02 Score=22.95 Aligned_cols=66 Identities=17% Similarity=0.062 Sum_probs=24.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
+++|+|...+.++.|-+.|=...-....-|+-.... ......|+|+++... -..+..+++||.+..
T Consensus 31 rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~~~~~~vLinL~~~ 96 (137)
T PF04364_consen 31 RVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NPNNHADVLINLSGE 96 (137)
T ss_dssp -EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS------S--SEEEE--SS
T ss_pred eEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CCCCCCCEEEECCCC
Confidence 355556555555555555533322222223221110 011246888886532 123346789998743
No 316
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=25.32 E-value=2e+02 Score=25.97 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=33.4
Q ss_pred CEEEEcC-cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHh
Q psy18034 1 MTVVFTA-TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQ 46 (251)
Q Consensus 1 k~iIF~~-t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~ 46 (251)
+++|||. +-..+..++..|...|+.+..+.|++..= |...++.+.
T Consensus 90 ~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 90 RGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred eEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHh
Confidence 3789994 55667788899999999999999998653 444445554
No 317
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=25.26 E-value=1.2e+02 Score=30.87 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc------cc--ccccccccEEEEe----------
Q psy18034 13 EYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA------AR--GIDIPSLDAVINY---------- 74 (251)
Q Consensus 13 ~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~------~~--Gldi~~v~~VI~~---------- 74 (251)
..|...++..|+++..-||++++.+|.. +...--+|||+|+-- +. --.+.++.+||-=
T Consensus 91 ~rL~~~~~~~G~~v~vRhGDT~~~er~r----~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 91 RRLEEPLRELGIEVAVRHGDTPQSEKQK----MLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHcCCccceecCCCChHHhhh----ccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 3455556677999999999999998875 334567899999721 11 1234578888742
Q ss_pred --cCCCChhhHHHHhhhcccCC
Q psy18034 75 --NFPCKAKLFVHRVGRCARAG 94 (251)
Q Consensus 75 --d~P~~~~~y~qr~GR~gR~g 94 (251)
.+--+.+.+..-+|+.-|.|
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIG 188 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIG 188 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEe
Confidence 22344555555666444444
No 318
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=25.22 E-value=1.2e+02 Score=27.84 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=54.2
Q ss_pred CEEEEcC---------cHHHHHHHHHHHHhCCCcEEE--EcCCCCHHH-HHHHHHHHhcCCceEEEeccccccccccccc
Q psy18034 1 MTVVFTA---------TKYHVEYVHKILGLAGISSTY--IYSDLDPTA-RKINAAKFQTGKIRVLVVTDVAARGIDIPSL 68 (251)
Q Consensus 1 k~iIF~~---------t~~~~~~l~~~L~~~~~~~~~--i~g~~~~~~-r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v 68 (251)
|..|.|| |++....+.++..+.|+.+.. ||.++.-.. +.........+-.+..++...++.+-|++++
T Consensus 160 kl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL 239 (388)
T COG1168 160 KLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGL 239 (388)
T ss_pred cEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhh
Confidence 3567776 678888888888888877653 676654332 2222222222222334444457888999866
Q ss_pred cEEEE-ecCCCChhhHHHHhhhcccCC
Q psy18034 69 DAVIN-YNFPCKAKLFVHRVGRCARAG 94 (251)
Q Consensus 69 ~~VI~-~d~P~~~~~y~qr~GR~gR~g 94 (251)
.+-.- ..-|.....|..|+-|.++.|
T Consensus 240 ~~a~~Ii~n~~lr~~~~~~l~~~~~~~ 266 (388)
T COG1168 240 KCAYIIISNRELRAKFLKRLKRNGLHG 266 (388)
T ss_pred hheeEEecCHHHHHHHHHHHHHhcCCC
Confidence 53221 222334467888887666654
No 319
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=24.84 E-value=3e+02 Score=20.50 Aligned_cols=54 Identities=11% Similarity=-0.008 Sum_probs=34.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++|=+.+.+.+....+.+.+.|.++..=+.++++++ ...++++... ..+|++.+
T Consensus 70 VvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~-~~~l~~~a~~-~~vl~a~N 123 (124)
T PF01113_consen 70 VVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQ-IDELEELAKK-IPVLIAPN 123 (124)
T ss_dssp EEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHH-HHHHHHHTTT-SEEEE-SS
T ss_pred EEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHH-HHHHHHHhcc-CCEEEeCC
Confidence 455566788888888888888888877777776554 4456665444 88888764
No 320
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=24.83 E-value=2.2e+02 Score=22.24 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=37.9
Q ss_pred EEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhc-CCceEEEec
Q psy18034 4 VFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQT-GKIRVLVVT 56 (251)
Q Consensus 4 IF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~-g~~~iLv~T 56 (251)
||..|-++--.+.+.++-.|+++..+..+-+++.+..++...+. ++.-++|.+
T Consensus 48 i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k~vmVGn 101 (152)
T COG4087 48 IYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEKVVMVGN 101 (152)
T ss_pred EEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcEEEEecC
Confidence 45555444445555566668999999988999999999999984 455566654
No 321
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=24.44 E-value=1.1e+02 Score=22.49 Aligned_cols=20 Identities=15% Similarity=-0.066 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhCCCcEEE
Q psy18034 9 KYHVEYVHKILGLAGISSTY 28 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~ 28 (251)
+.....+++.|...|+.+..
T Consensus 12 k~~~~~~a~~l~~~G~~i~a 31 (116)
T cd01423 12 KPELLPTAQKLSKLGYKLYA 31 (116)
T ss_pred chhHHHHHHHHHHCCCEEEE
Confidence 34556667777777766643
No 322
>KOG0383|consensus
Probab=24.21 E-value=38 Score=33.59 Aligned_cols=61 Identities=15% Similarity=0.254 Sum_probs=49.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC---CceEEEeccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG---KIRVLVVTDVAARG 62 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g---~~~iLv~Td~~~~G 62 (251)
|++||..-.+..+.+-.++...+ .-..+.|.....+|...++.|... ..-.|.+|.+.+-|
T Consensus 633 rvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 633 RVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 46677777888888888888888 777889999999999999999843 55688999877655
No 323
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=23.91 E-value=1.7e+02 Score=24.76 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHH------------------------HHHHHHHHHhcCCceE-EEecccccccc
Q psy18034 9 KYHVEYVHKILGLAGISSTYIYSDLDPT------------------------ARKINAAKFQTGKIRV-LVVTDVAARGI 63 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~i~g~~~~~------------------------~r~~~~~~F~~g~~~i-Lv~Td~~~~Gl 63 (251)
....+.+.+.|+..|+.. .++|++..+ .+.+.+++|-+..+++ +++++ +.|+
T Consensus 71 e~~~e~l~~~l~~~gv~~-vv~GdI~s~~qr~~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i~~G~~aiIv~v~--a~gL 147 (223)
T TIGR00290 71 EDEVEELKGILHTLDVEA-VVFGAIYSEYQKTRIERVCRELGLKSFAPLWHRDPEKLMEEFVEEKFEARIIAVA--AEGL 147 (223)
T ss_pred cHHHHHHHHHHHHcCCCE-EEECCcccHHHHHHHHHHHHhcCCEEeccccCCCHHHHHHHHHHcCCeEEEEEEe--cCCC
Confidence 345667777777776543 466666422 2345666766555554 44444 5577
Q ss_pred ccccccEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecC
Q psy18034 64 DIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSS 105 (251)
Q Consensus 64 di~~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 105 (251)
|-..+.-.|+-++-.....+..|-| ..-.|..|..-+|+..
T Consensus 148 ~~~~LGr~i~~e~i~~L~~~~~~~g-vd~~GEgGEyhT~V~d 188 (223)
T TIGR00290 148 DESWLGRRIDRKMIDELKKLNEKYG-IHPAGEGGEFETLVLD 188 (223)
T ss_pred ChHHcCCcccHHHHHHHHHHHhccC-CCccCCCceEEEEEec
Confidence 7655554444322111111111111 2345777887777754
No 324
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=23.89 E-value=2.5e+02 Score=19.40 Aligned_cols=52 Identities=15% Similarity=0.009 Sum_probs=34.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
.+|-|..+..+..|.+..-. ..+.+.+|..-..+..+.+.+. ...|+++||.
T Consensus 3 ~vIiVEG~~D~~~l~~~g~~--~~~i~t~Gt~~~~~~~~~l~~~---~~~VIiltD~ 54 (81)
T cd01027 3 EVIIVEGKNDTESLKKLGIE--AEIIETNGSIINKETIELIKKA---YRGVIILTDP 54 (81)
T ss_pred eEEEEEchHHHHHHHHhCCC--ccEEEECCCcCCHHHHHHHHHh---CCEEEEEECC
Confidence 46778888888776665422 2566677765555555556655 5678999984
No 325
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=23.85 E-value=1.3e+02 Score=22.93 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCceEEEeccccccccccc------cccEEEEec
Q psy18034 39 KINAAKFQTGKIRVLVVTDVAARGIDIP------SLDAVINYN 75 (251)
Q Consensus 39 ~~~~~~F~~g~~~iLv~Td~~~~Gldi~------~v~~VI~~d 75 (251)
.+++++..+|++.+.|-|.--.-|+|++ .-++||.||
T Consensus 64 ~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD 106 (144)
T PF10657_consen 64 PEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFD 106 (144)
T ss_pred HHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEecc
Confidence 5678999999999999987777788876 235788888
No 326
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=23.76 E-value=4.3e+02 Score=23.33 Aligned_cols=110 Identities=10% Similarity=0.089 Sum_probs=52.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHH------------HHH---hcCCceEEEec-cccccc--
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINA------------AKF---QTGKIRVLVVT-DVAARG-- 62 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~------------~~F---~~g~~~iLv~T-d~~~~G-- 62 (251)
+++|.++.....+.+-.+|...++...-+.|.+-..+....- ... ......|-++| +-+...
T Consensus 119 ~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~ 198 (297)
T PF11496_consen 119 HILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKP 198 (297)
T ss_dssp EEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TTTS
T ss_pred eEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCC
Confidence 478999999999999999998888877777765544433222 000 01134444444 433332
Q ss_pred --cccccccEEEEecCCCChh-hHHHHhhhcccCCCCceEEEEecCccHHH
Q psy18034 63 --IDIPSLDAVINYNFPCKAK-LFVHRVGRCARAGRSGVAYSLVSSDELCY 110 (251)
Q Consensus 63 --ldi~~v~~VI~~d~P~~~~-~y~qr~GR~gR~g~~g~~i~l~~~~e~~~ 110 (251)
.+-..++.||-||.-.++. ..+|++-..+|.++.--.+.++...-...
T Consensus 199 ~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~nSiEH 249 (297)
T PF11496_consen 199 PLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPSNSIEH 249 (297)
T ss_dssp --TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEETTSHHH
T ss_pred CccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeCCCHHH
Confidence 2223778999999875544 35555544444333445566665554443
No 327
>KOG0385|consensus
Probab=23.09 E-value=2.8e+02 Score=28.22 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=36.1
Q ss_pred EEEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHH-hcCCceEEEec-cccc
Q psy18034 3 VVFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKF-QTGKIRVLVVT-DVAA 60 (251)
Q Consensus 3 iIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F-~~g~~~iLv~T-d~~~ 60 (251)
+|.|+- .+...+...++.. ++.+.++||+ +++|....+.+ ..|..+|+|+| +++-
T Consensus 221 LVi~P~-StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsYEi~i 279 (971)
T KOG0385|consen 221 LVIAPK-STLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSYEIAI 279 (971)
T ss_pred EEEeeH-hhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehHHHHH
Confidence 455554 3334444444444 7899999997 57888777775 45588999988 3443
No 328
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=22.99 E-value=4.3e+02 Score=23.35 Aligned_cols=49 Identities=6% Similarity=-0.012 Sum_probs=39.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKI 50 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~ 50 (251)
.+||++-...++.+.+.+..---.+.+++-+.|..+-.++.+.-+....
T Consensus 69 svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~ 117 (293)
T COG0074 69 SVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGT 117 (293)
T ss_pred EEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 5899999999999999987654457788888998888887777766653
No 329
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=22.85 E-value=2.1e+02 Score=18.02 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=32.8
Q ss_pred EEEEc-CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEe
Q psy18034 2 TVVFT-ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVV 55 (251)
Q Consensus 2 ~iIF~-~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~ 55 (251)
+.+|. +.+..|..+...|...++....+.-+.....+....+....+.+.+|+-
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 34555 4588888999999988888777765544443333222223355655554
No 330
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=21.92 E-value=5.1e+02 Score=22.19 Aligned_cols=48 Identities=13% Similarity=-0.018 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEe
Q psy18034 8 TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVV 55 (251)
Q Consensus 8 t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~ 55 (251)
.......+....-+.|..+.+-..+++.++..++.+.-+.....++++
T Consensus 77 ~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a 124 (266)
T TIGR00036 77 TPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIA 124 (266)
T ss_pred ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEE
Confidence 334444444444455666655555566665555544444444555554
No 331
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=21.77 E-value=1.2e+02 Score=26.99 Aligned_cols=34 Identities=6% Similarity=0.078 Sum_probs=28.1
Q ss_pred EEEEcC-cHHHHHHHHHHHHhCCCcEEEEcCCCCH
Q psy18034 2 TVVFTA-TKYHVEYVHKILGLAGISSTYIYSDLDP 35 (251)
Q Consensus 2 ~iIF~~-t~~~~~~l~~~L~~~~~~~~~i~g~~~~ 35 (251)
++|||. +-..+...+..|...|+.+..+.|++..
T Consensus 77 vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~a 111 (311)
T TIGR03167 77 PLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKA 111 (311)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCEEEecChHHH
Confidence 789994 5566788889999999999999998754
No 332
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=21.36 E-value=2.2e+02 Score=25.38 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCC-CHHHHHHHHHHHhcCCceEEEeccc
Q psy18034 11 HVEYVHKILGLAGISSTYIYSDL-DPTARKINAAKFQTGKIRVLVVTDV 58 (251)
Q Consensus 11 ~~~~l~~~L~~~~~~~~~i~g~~-~~~~r~~~~~~F~~g~~~iLv~Td~ 58 (251)
.++.+.+.++..+--...+.|.| +..-|..+...-++|-++++|+|..
T Consensus 43 A~~i~~~ml~d~~~ifL~~tg~mvs~Glr~ii~~Li~~~~VD~iVtTga 91 (312)
T PRK01221 43 ASEILKEMISDADLRFLSFTANLVSTGLRGLIADLIKRGLFNVVITTCG 91 (312)
T ss_pred HHHHHHHHHcCCCeEEEEecchhHHHHHHHHHHHHHHcCCeeEEEeCCC
Confidence 34455555544453456678999 6667777777788999999999964
No 333
>cd03363 TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=21.34 E-value=3.6e+02 Score=20.21 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=37.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCC-------------------------HHHHHHHHHHHhcCCceEEEe
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLD-------------------------PTARKINAAKFQTGKIRVLVV 55 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~-------------------------~~~r~~~~~~F~~g~~~iLv~ 55 (251)
+.+|.+.....+..+++.|.. ++.+.+..|.+- .......++++..+--.|++|
T Consensus 1 ~~LiIaEKp~~a~~ia~~Lg~-~~~v~~~~GHl~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~l~~~~~eiiiA 79 (123)
T cd03363 1 KKLVIVESPAKAKTIKKYLGK-EYEVLASVGHIRDLPKKGLGVDGEDDGFEPKYVVIPGKKKVVKELKKLAKKADEIYLA 79 (123)
T ss_pred CEEEEEeCHHHHHHHHHHhCC-CcEEEeccCccccCCCcccCCChhccCcCceEEECccHHHHHHHHHHHHhcCCEEEEc
Confidence 468889999999999999854 344444444320 122344555555444457777
Q ss_pred ccccccc
Q psy18034 56 TDVAARG 62 (251)
Q Consensus 56 Td~~~~G 62 (251)
||.-.+|
T Consensus 80 tD~drEG 86 (123)
T cd03363 80 TDPDREG 86 (123)
T ss_pred CCCCcch
Confidence 7766555
No 334
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=21.32 E-value=1.6e+02 Score=22.87 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=8.1
Q ss_pred HHHHHHhcCCceEEEec
Q psy18034 40 INAAKFQTGKIRVLVVT 56 (251)
Q Consensus 40 ~~~~~F~~g~~~iLv~T 56 (251)
.+.+.+++|+++.+|.|
T Consensus 66 ~i~~~I~~g~i~lVInt 82 (142)
T PRK05234 66 QIGALIAEGKIDMLIFF 82 (142)
T ss_pred hHHHHHHcCceeEEEEe
Confidence 34455555554444443
No 335
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=21.24 E-value=2.5e+02 Score=18.31 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=29.5
Q ss_pred CEEEEcCcH-HHHHHHHHHH----HhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccc
Q psy18034 1 MTVVFTATK-YHVEYVHKIL----GLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAA 60 (251)
Q Consensus 1 k~iIF~~t~-~~~~~l~~~L----~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~ 60 (251)
|+++.|++- .+...+...| ...++....-+.+...- ....+..++++|.-+.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~dliitt~~~~ 57 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV--------IDLADADLIISTVPLA 57 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh--------hhcCCccEEEECCccc
Confidence 578888765 4444444444 44466554444444331 2346678888886543
No 336
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=21.07 E-value=3.4e+02 Score=24.34 Aligned_cols=35 Identities=9% Similarity=-0.045 Sum_probs=23.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--------CCcEEEEcCCCCH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--------GISSTYIYSDLDP 35 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--------~~~~~~i~g~~~~ 35 (251)
+++++++++..++..++.++.. +..+..++|...+
T Consensus 41 ~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 83 (357)
T TIGR03158 41 DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLK 83 (357)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchH
Confidence 4788999998888776665543 4456666676433
No 337
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=21.04 E-value=3.8e+02 Score=21.81 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEec
Q psy18034 11 HVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVT 56 (251)
Q Consensus 11 ~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~T 56 (251)
..+.+.+.++..|+.+..+.++.++......++.+....++.+|.+
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~ 62 (259)
T cd01542 17 TVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILL 62 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4455666777779988887777777777778888888777766554
No 338
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.98 E-value=2.5e+02 Score=22.62 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=36.7
Q ss_pred HHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccc
Q psy18034 14 YVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAA 60 (251)
Q Consensus 14 ~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~ 60 (251)
.|..+|+..|+....+.|-.+...-......-.+...++++.+|+.+
T Consensus 123 ~L~~~Lr~~~i~~l~v~G~~td~CV~~T~~~A~~~gy~v~v~~da~~ 169 (205)
T COG1335 123 DLDDILRNLGIDTVVVCGIATDICVLATARDAFDLGYQVTLVEDATA 169 (205)
T ss_pred CHHHHHHHCCCCEEEEeeeehhHHHHHHHHHHHHCCCeEEEehhhcc
Confidence 46788899999999999988877766666665566678888887654
No 339
>KOG0327|consensus
Probab=20.22 E-value=2.3e+02 Score=26.07 Aligned_cols=64 Identities=8% Similarity=-0.086 Sum_probs=49.5
Q ss_pred HHHHhcCCceEEEeccccccccccccccEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCc
Q psy18034 42 AAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSD 106 (251)
Q Consensus 42 ~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 106 (251)
..-++....++..|+.-+.++.+...+.-+.++-.+.+|....++..|. +.+..|....++.+.
T Consensus 115 ~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 115 RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEA 178 (397)
T ss_pred HhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecch
Confidence 4445556778888888888888877777777777888999999999884 777788887777653
No 340
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=20.07 E-value=11 Score=37.75 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=33.1
Q ss_pred EeccccccccccccccEEEEecCCCChhhHHHHhhhcccCCC
Q psy18034 54 VVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGR 95 (251)
Q Consensus 54 v~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~g~ 95 (251)
+.++...+|..+..+...+.+++|++| ..+|+|+-.+.++
T Consensus 484 ikn~~s~~~~~l~~~~~~~~~~LtgTP--len~l~eL~sl~~ 523 (866)
T COG0553 484 IKNDQSSEGKALQFLKALNRLDLTGTP--LENRLGELWSLLQ 523 (866)
T ss_pred HhhhhhHHHHHHHHHhhcceeeCCCCh--HhhhHHHHHHHHH
Confidence 567778888888888899999999999 5788888777654
No 341
>KOG0952|consensus
Probab=20.02 E-value=2.1e+02 Score=30.00 Aligned_cols=113 Identities=20% Similarity=0.152 Sum_probs=69.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc----ccccc-cc----ccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD----VAARG-ID----IPS 67 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td----~~~~G-ld----i~~ 67 (251)
|+|-.+++++-|.++++.+.+. |+.|..++|+|.-..-+ + .+++|||+|+ ++.|- .+ +..
T Consensus 166 KiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i------~~tqiiVTTPEKwDvvTRk~~~d~~l~~~ 238 (1230)
T KOG0952|consen 166 KIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-I------ADTQIIVTTPEKWDVVTRKSVGDSALFSL 238 (1230)
T ss_pred eEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH-H------HhcCEEEecccceeeeeeeeccchhhhhh
Confidence 4566678888887777666544 89999999998543322 2 3478999994 55552 21 234
Q ss_pred ccEEEE-------ecCCCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCC
Q psy18034 68 LDAVIN-------YNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRK 121 (251)
Q Consensus 68 v~~VI~-------~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~ 121 (251)
|..||- =|--...+..+-|.-|---.++...-++=+ ..-++-+.++..+|+..
T Consensus 239 V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgL-SATlPN~eDvA~fL~vn 298 (1230)
T KOG0952|consen 239 VRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGL-SATLPNYEDVARFLRVN 298 (1230)
T ss_pred eeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEe-eccCCCHHHHHHHhcCC
Confidence 555542 222244667776665544444444333322 34567778888898885
Done!