Query psy18034
Match_columns 251
No_of_seqs 273 out of 2341
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 20:46:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjv_A ATP-dependent RNA helic 100.0 3.7E-31 1.3E-35 211.9 16.9 126 1-126 37-162 (163)
2 3eaq_A Heat resistant RNA depe 100.0 9.2E-31 3.1E-35 218.5 17.0 129 1-129 33-161 (212)
3 2rb4_A ATP-dependent RNA helic 100.0 1.7E-30 5.7E-35 210.3 16.0 127 1-127 36-168 (175)
4 1t5i_A C_terminal domain of A 100.0 1.8E-30 6.2E-35 209.9 15.8 127 1-127 33-160 (172)
5 1fuk_A Eukaryotic initiation f 100.0 1.9E-30 6.6E-35 208.0 14.9 127 1-127 32-158 (165)
6 2p6n_A ATP-dependent RNA helic 100.0 9.5E-30 3.3E-34 209.2 13.5 125 1-125 56-181 (191)
7 3i32_A Heat resistant RNA depe 100.0 3.2E-29 1.1E-33 219.6 17.2 131 1-131 30-160 (300)
8 2jgn_A DBX, DDX3, ATP-dependen 100.0 8.5E-30 2.9E-34 208.4 12.2 124 1-124 48-171 (185)
9 2yjt_D ATP-dependent RNA helic 99.9 3E-30 1E-34 208.0 0.0 126 1-126 32-157 (170)
10 2db3_A ATP-dependent RNA helic 99.9 2.2E-27 7.4E-32 217.6 14.7 125 1-125 302-427 (434)
11 2j0s_A ATP-dependent RNA helic 99.9 5.3E-27 1.8E-31 212.0 15.5 127 1-127 278-404 (410)
12 3i5x_A ATP-dependent RNA helic 99.9 3.3E-26 1.1E-30 215.5 18.6 126 1-126 341-469 (563)
13 1s2m_A Putative ATP-dependent 99.9 2.9E-26 9.9E-31 206.3 16.2 128 1-128 260-387 (400)
14 3sqw_A ATP-dependent RNA helic 99.9 9.4E-26 3.2E-30 213.6 18.5 126 1-126 290-418 (579)
15 2i4i_A ATP-dependent RNA helic 99.9 3E-26 1E-30 207.1 12.6 122 1-122 278-399 (417)
16 3eiq_A Eukaryotic initiation f 99.9 2.3E-26 7.9E-31 207.5 11.6 127 1-127 282-408 (414)
17 1hv8_A Putative ATP-dependent 99.9 1.1E-25 3.8E-30 199.3 15.8 126 1-126 240-365 (367)
18 1xti_A Probable ATP-dependent 99.9 1.7E-25 6E-30 200.3 16.4 128 1-128 252-380 (391)
19 3fht_A ATP-dependent RNA helic 99.9 1.2E-25 3.9E-30 202.6 15.1 127 1-127 268-401 (412)
20 3pey_A ATP-dependent RNA helic 99.9 5.2E-25 1.8E-29 196.8 14.9 126 1-126 245-378 (395)
21 1oyw_A RECQ helicase, ATP-depe 99.9 1.7E-24 5.8E-29 203.0 14.9 116 1-116 238-353 (523)
22 2v1x_A ATP-dependent DNA helic 99.9 1.7E-24 5.9E-29 205.6 13.7 114 1-114 269-382 (591)
23 1fuu_A Yeast initiation factor 99.9 4.4E-26 1.5E-30 204.2 0.0 127 1-127 261-387 (394)
24 3fmp_B ATP-dependent RNA helic 99.9 5.4E-26 1.8E-30 210.2 0.0 126 1-126 335-467 (479)
25 2z0m_A 337AA long hypothetical 99.9 3.8E-24 1.3E-28 187.5 11.1 115 1-120 222-336 (337)
26 3oiy_A Reverse gyrase helicase 99.9 9.2E-23 3.1E-27 185.0 13.5 116 1-124 254-383 (414)
27 4a2p_A RIG-I, retinoic acid in 99.9 2.5E-23 8.5E-28 194.4 9.3 108 1-110 392-512 (556)
28 3fho_A ATP-dependent RNA helic 99.9 6.4E-24 2.2E-28 198.3 3.6 127 1-127 359-492 (508)
29 1wp9_A ATP-dependent RNA helic 99.9 1.2E-22 4.1E-27 184.9 11.1 108 1-109 363-478 (494)
30 3tbk_A RIG-I helicase domain; 99.9 3.6E-23 1.2E-27 192.9 7.4 112 1-114 391-515 (555)
31 2d7d_A Uvrabc system protein B 99.9 7.7E-22 2.6E-26 189.6 14.7 114 1-115 447-565 (661)
32 1yks_A Genome polyprotein [con 99.9 2E-22 6.9E-27 185.1 10.0 113 1-118 179-314 (440)
33 1tf5_A Preprotein translocase 99.9 2.3E-22 8E-27 194.4 10.5 105 1-107 434-546 (844)
34 1c4o_A DNA nucleotide excision 99.9 1.1E-21 3.7E-26 188.7 14.6 115 1-116 441-560 (664)
35 2ykg_A Probable ATP-dependent 99.9 8.8E-23 3E-27 196.5 5.4 112 1-114 400-524 (696)
36 1z5z_A Helicase of the SNF2/RA 99.9 6E-22 2E-26 171.1 10.0 106 1-106 114-224 (271)
37 4gl2_A Interferon-induced heli 99.9 7.8E-22 2.7E-26 190.0 11.0 102 1-105 402-517 (699)
38 4a2q_A RIG-I, retinoic acid in 99.9 5.8E-22 2E-26 194.1 9.4 107 1-109 633-752 (797)
39 2whx_A Serine protease/ntpase/ 99.9 1.6E-21 5.5E-26 186.0 11.7 113 1-118 357-493 (618)
40 3jux_A Protein translocase sub 99.9 4.4E-21 1.5E-25 182.6 14.2 105 1-107 476-588 (822)
41 3dmq_A RNA polymerase-associat 99.9 8.6E-22 2.9E-26 196.4 9.5 118 1-118 505-625 (968)
42 2jlq_A Serine protease subunit 99.8 5.3E-21 1.8E-25 176.1 10.8 100 1-105 190-310 (451)
43 2wv9_A Flavivirin protease NS2 99.8 4.7E-21 1.6E-25 184.2 10.8 113 1-118 412-548 (673)
44 4a2w_A RIG-I, retinoic acid in 99.8 2.6E-21 8.9E-26 192.4 9.3 107 1-109 633-752 (936)
45 2z83_A Helicase/nucleoside tri 99.8 1.8E-21 6.3E-26 179.6 6.7 101 1-106 192-313 (459)
46 3o8b_A HCV NS3 protease/helica 99.8 1.7E-21 5.9E-26 185.9 5.7 116 1-126 398-538 (666)
47 3rc3_A ATP-dependent RNA helic 99.8 6E-20 2.1E-24 176.4 15.8 121 2-124 323-462 (677)
48 2fsf_A Preprotein translocase 99.8 1.1E-20 3.9E-25 182.4 10.6 105 1-107 443-584 (853)
49 1nkt_A Preprotein translocase 99.8 8.2E-20 2.8E-24 176.9 13.3 106 1-108 462-619 (922)
50 4ddu_A Reverse gyrase; topoiso 99.8 8.3E-20 2.8E-24 183.9 12.7 113 1-119 311-503 (1104)
51 2xgj_A ATP-dependent RNA helic 99.8 1.2E-19 4E-24 181.4 13.6 114 1-114 345-508 (1010)
52 2va8_A SSO2462, SKI2-type heli 99.8 3.2E-19 1.1E-23 172.7 15.6 107 1-107 254-409 (715)
53 1gku_B Reverse gyrase, TOP-RG; 99.8 6.4E-20 2.2E-24 184.2 10.4 114 1-120 277-468 (1054)
54 3l9o_A ATP-dependent RNA helic 99.8 1E-19 3.4E-24 183.3 11.8 107 1-107 443-598 (1108)
55 2v6i_A RNA helicase; membrane, 99.8 1.4E-19 4.7E-24 165.9 11.4 98 1-103 173-288 (431)
56 2zj8_A DNA helicase, putative 99.8 2.3E-19 7.9E-24 173.8 13.5 123 1-125 239-404 (720)
57 2xau_A PRE-mRNA-splicing facto 99.8 2.7E-20 9.1E-25 181.6 5.9 107 1-108 305-445 (773)
58 2p6r_A Afuhel308 helicase; pro 99.8 2.5E-19 8.7E-24 173.1 12.4 108 1-108 244-390 (702)
59 1z63_A Helicase of the SNF2/RA 99.8 5.5E-19 1.9E-23 163.9 13.1 107 1-107 343-454 (500)
60 2eyq_A TRCF, transcription-rep 99.8 3.1E-19 1.1E-23 180.5 10.5 107 1-107 814-923 (1151)
61 2oca_A DAR protein, ATP-depend 99.8 3.1E-19 1.1E-23 165.9 9.7 102 2-104 351-453 (510)
62 2fwr_A DNA repair protein RAD2 99.8 1.2E-19 4E-24 167.3 5.2 101 1-106 351-454 (472)
63 1gm5_A RECG; helicase, replica 99.8 1.1E-19 3.7E-24 177.0 2.9 109 1-109 580-700 (780)
64 1z3i_X Similar to RAD54-like; 99.8 3.3E-18 1.1E-22 164.0 12.9 106 1-106 418-528 (644)
65 3h1t_A Type I site-specific re 99.7 2.3E-18 7.8E-23 163.1 10.0 94 1-95 441-545 (590)
66 4a4z_A Antiviral helicase SKI2 99.7 9.4E-18 3.2E-22 167.6 12.8 114 1-114 338-502 (997)
67 3mwy_W Chromo domain-containin 99.7 2.5E-17 8.5E-22 161.5 11.0 119 1-119 574-699 (800)
68 4f92_B U5 small nuclear ribonu 99.7 2.6E-16 8.9E-21 164.0 12.5 114 1-114 1157-1316(1724)
69 4f92_B U5 small nuclear ribonu 99.6 3.2E-16 1.1E-20 163.3 10.1 114 1-114 319-481 (1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 1.8E-13 6.1E-18 136.8 12.9 118 1-120 539-722 (1038)
71 2vl7_A XPD; helicase, unknown 98.5 1.6E-07 5.5E-12 88.0 7.6 98 1-104 386-519 (540)
72 2ipc_A Preprotein translocase 98.0 2.6E-05 8.8E-10 76.3 10.1 38 70-107 662-699 (997)
73 3hgt_A HDA1 complex subunit 3; 97.6 0.0003 1E-08 61.4 10.4 104 1-109 127-240 (328)
74 4a15_A XPD helicase, ATP-depen 97.3 0.0007 2.4E-08 64.3 9.0 74 1-78 450-527 (620)
75 3crv_A XPD/RAD3 related DNA he 96.3 0.03 1E-06 52.1 11.5 71 2-78 396-473 (551)
76 1gm5_A RECG; helicase, replica 96.3 0.011 3.6E-07 57.7 8.5 73 1-73 419-496 (780)
77 3oiy_A Reverse gyrase helicase 95.7 0.023 7.9E-07 50.4 7.5 73 1-73 66-145 (414)
78 4ddu_A Reverse gyrase; topoiso 94.2 0.08 2.7E-06 53.5 7.2 73 1-73 123-202 (1104)
79 2eyq_A TRCF, transcription-rep 94.2 0.11 3.7E-06 52.8 8.2 72 1-72 654-730 (1151)
80 1t6n_A Probable ATP-dependent 94.1 0.26 9E-06 39.4 8.9 69 1-72 84-163 (220)
81 3fe2_A Probable ATP-dependent 93.7 0.26 8.8E-06 40.3 8.2 68 1-72 104-181 (242)
82 1oyw_A RECQ helicase, ATP-depe 93.4 0.19 6.5E-06 46.4 7.7 57 1-57 67-123 (523)
83 2v1x_A ATP-dependent DNA helic 92.9 0.2 6.8E-06 47.1 7.0 57 1-57 86-144 (591)
84 3ber_A Probable ATP-dependent 92.7 0.49 1.7E-05 39.0 8.5 69 1-73 113-192 (249)
85 2oxc_A Probable ATP-dependent 91.9 0.52 1.8E-05 38.1 7.6 67 1-72 94-171 (230)
86 1vec_A ATP-dependent RNA helic 91.8 0.68 2.3E-05 36.4 8.1 53 1-57 73-130 (206)
87 2gxq_A Heat resistant RNA depe 91.4 0.72 2.4E-05 36.2 7.8 69 1-73 74-150 (207)
88 3iuy_A Probable ATP-dependent 91.0 0.47 1.6E-05 38.1 6.4 68 1-72 96-172 (228)
89 3bor_A Human initiation factor 90.9 0.51 1.7E-05 38.4 6.6 70 1-73 100-179 (237)
90 1wrb_A DJVLGB; RNA helicase, D 90.8 0.83 2.8E-05 37.3 7.9 68 1-72 102-179 (253)
91 3ly5_A ATP-dependent RNA helic 89.9 1.4 4.8E-05 36.4 8.5 68 1-72 128-206 (262)
92 2pl3_A Probable ATP-dependent 89.3 0.82 2.8E-05 36.9 6.5 52 1-57 99-154 (236)
93 1xti_A Probable ATP-dependent 88.7 1.3 4.5E-05 38.1 7.9 70 1-73 78-158 (391)
94 2i4i_A ATP-dependent RNA helic 88.4 1.8 6.1E-05 37.7 8.6 69 1-73 103-181 (417)
95 2l82_A Designed protein OR32; 88.3 2.5 8.7E-05 30.5 7.6 52 3-54 6-57 (162)
96 1qde_A EIF4A, translation init 88.0 0.72 2.4E-05 36.8 5.3 67 1-72 84-160 (224)
97 1q0u_A Bstdead; DEAD protein, 87.7 0.51 1.7E-05 37.7 4.2 68 1-72 74-155 (219)
98 1gku_B Reverse gyrase, TOP-RG; 86.6 0.81 2.8E-05 46.0 5.7 71 1-73 101-181 (1054)
99 2db3_A ATP-dependent RNA helic 83.9 1.4 4.7E-05 39.3 5.4 69 1-73 131-209 (434)
100 3fmo_B ATP-dependent RNA helic 83.7 1.1 3.7E-05 38.0 4.5 66 1-73 164-241 (300)
101 2j0s_A ATP-dependent RNA helic 83.7 4.3 0.00015 35.2 8.6 69 1-73 107-185 (410)
102 1s2m_A Putative ATP-dependent 83.7 3.7 0.00013 35.4 8.1 69 1-73 91-169 (400)
103 1wp9_A ATP-dependent RNA helic 83.4 3 0.0001 36.5 7.4 68 1-73 54-131 (494)
104 3tbk_A RIG-I helicase domain; 81.9 1.2 4E-05 40.4 4.2 69 1-73 54-133 (555)
105 1fuu_A Yeast initiation factor 81.8 3.3 0.00011 35.6 7.0 68 1-73 91-168 (394)
106 3dkp_A Probable ATP-dependent 81.4 0.99 3.4E-05 36.6 3.2 70 1-73 100-181 (245)
107 2z0m_A 337AA long hypothetical 80.4 3.4 0.00012 34.6 6.4 68 1-73 58-135 (337)
108 4a2p_A RIG-I, retinoic acid in 80.2 1.7 5.9E-05 39.4 4.8 69 1-73 57-136 (556)
109 2fsf_A Preprotein translocase 80.1 2.6 8.9E-05 41.2 6.1 51 1-57 117-171 (853)
110 1wv9_A Rhodanese homolog TT165 79.7 1.7 5.8E-05 29.8 3.6 34 1-34 55-88 (94)
111 4a2q_A RIG-I, retinoic acid in 79.2 3 0.0001 40.3 6.2 69 1-73 298-377 (797)
112 3gk5_A Uncharacterized rhodane 78.7 1.7 5.7E-05 30.9 3.3 34 1-34 57-90 (108)
113 1tf5_A Preprotein translocase 78.5 3.7 0.00013 40.1 6.6 51 1-57 126-180 (844)
114 1hv8_A Putative ATP-dependent 77.0 7.4 0.00025 32.8 7.6 68 1-73 76-153 (367)
115 3foj_A Uncharacterized protein 74.8 1.9 6.5E-05 29.9 2.7 33 2-34 59-91 (100)
116 3iwh_A Rhodanese-like domain p 74.4 1.6 5.5E-05 30.9 2.2 32 2-33 59-90 (103)
117 3eiq_A Eukaryotic initiation f 73.3 7.8 0.00027 33.4 6.9 70 1-73 110-189 (414)
118 3b6e_A Interferon-induced heli 73.2 2.2 7.5E-05 33.3 3.0 53 1-57 84-140 (216)
119 3hix_A ALR3790 protein; rhodan 73.1 2.9 9.8E-05 29.4 3.3 34 1-34 54-88 (106)
120 2ykg_A Probable ATP-dependent 73.1 3.3 0.00011 39.0 4.7 69 1-73 63-142 (696)
121 1nkt_A Preprotein translocase 72.9 6.6 0.00022 38.7 6.7 51 1-57 154-208 (922)
122 3eme_A Rhodanese-like domain p 72.7 1.9 6.4E-05 30.1 2.2 33 2-34 59-91 (103)
123 2ipc_A Preprotein translocase 71.3 5.3 0.00018 39.5 5.6 51 1-57 122-176 (997)
124 4a2w_A RIG-I, retinoic acid in 70.0 4 0.00014 40.4 4.6 69 1-73 298-377 (936)
125 3i5x_A ATP-dependent RNA helic 69.2 10 0.00034 34.6 6.9 70 1-73 148-232 (563)
126 3sqw_A ATP-dependent RNA helic 68.6 10 0.00035 34.9 6.9 70 1-73 97-181 (579)
127 2oca_A DAR protein, ATP-depend 68.3 4.1 0.00014 36.8 4.0 66 1-73 159-231 (510)
128 2fz4_A DNA repair protein RAD2 67.9 7.4 0.00025 31.5 5.2 43 1-56 135-178 (237)
129 2jtq_A Phage shock protein E; 67.2 4.4 0.00015 27.0 3.1 33 2-34 44-76 (85)
130 2k0z_A Uncharacterized protein 66.8 6.1 0.00021 27.8 3.9 34 1-34 58-91 (110)
131 4gl2_A Interferon-induced heli 65.1 1.5 5.1E-05 41.4 0.3 69 1-73 58-142 (699)
132 2fwr_A DNA repair protein RAD2 65.0 5.7 0.0002 35.4 4.3 44 1-57 135-179 (472)
133 2fsx_A RV0390, COG0607: rhodan 64.9 6.3 0.00021 29.4 3.8 34 1-34 82-116 (148)
134 1gmx_A GLPE protein; transfera 64.3 4 0.00014 28.6 2.5 34 1-34 60-94 (108)
135 3l9o_A ATP-dependent RNA helic 62.7 6.3 0.00021 39.8 4.4 62 1-73 229-296 (1108)
136 2dko_A Caspase-3; low barrier 62.6 30 0.001 26.0 7.3 40 8-48 39-78 (146)
137 1tq1_A AT5G66040, senescence-a 61.8 4.4 0.00015 29.5 2.4 34 1-34 84-118 (129)
138 2hhg_A Hypothetical protein RP 61.2 4.7 0.00016 29.6 2.5 33 2-34 89-122 (139)
139 3nhv_A BH2092 protein; alpha-b 60.3 4.8 0.00016 30.1 2.4 33 2-34 75-109 (144)
140 3flh_A Uncharacterized protein 60.2 2.9 9.8E-05 30.3 1.1 33 2-34 74-108 (124)
141 3ilm_A ALR3790 protein; rhodan 58.6 7.3 0.00025 28.9 3.2 33 2-34 59-92 (141)
142 1qxn_A SUD, sulfide dehydrogen 58.3 5.7 0.00019 29.3 2.5 34 1-34 84-118 (137)
143 2p6r_A Afuhel308 helicase; pro 57.3 9.2 0.00031 36.2 4.3 66 1-73 70-144 (702)
144 3h11_B Caspase-8; cell death, 57.3 20 0.00067 30.0 5.9 40 8-48 47-86 (271)
145 3e4c_A Caspase-1; zymogen, inf 56.6 25 0.00087 29.8 6.6 45 2-47 63-118 (302)
146 2q5c_A NTRC family transcripti 56.1 71 0.0024 25.0 9.5 114 2-126 7-124 (196)
147 3h11_A CAsp8 and FADD-like apo 54.9 5.6 0.00019 33.5 2.1 46 2-48 46-91 (272)
148 2j32_A Caspase-3; Pro-caspase3 54.6 44 0.0015 27.4 7.6 54 8-63 39-95 (250)
149 1m72_A Caspase-1; caspase, cys 53.9 50 0.0017 27.4 7.9 71 9-85 55-128 (272)
150 1qtn_A Caspase-8; apoptosis, d 52.8 38 0.0013 25.9 6.5 39 9-48 54-92 (164)
151 1vee_A Proline-rich protein fa 52.8 9.1 0.00031 28.0 2.8 33 2-34 77-110 (134)
152 1pyo_A Caspase-2; apoptosis, c 52.6 30 0.001 26.7 5.8 38 9-47 57-94 (167)
153 3fht_A ATP-dependent RNA helic 52.1 17 0.00059 31.1 5.0 66 1-73 97-174 (412)
154 3pey_A ATP-dependent RNA helic 52.1 19 0.00065 30.5 5.2 65 1-73 77-151 (395)
155 3fmp_B ATP-dependent RNA helic 50.7 15 0.00052 32.6 4.5 66 1-73 164-241 (479)
156 2yan_A Glutaredoxin-3; oxidore 49.9 39 0.0013 23.1 5.8 53 1-53 18-76 (105)
157 3ipz_A Monothiol glutaredoxin- 49.5 52 0.0018 22.8 6.4 53 1-53 19-77 (109)
158 2gdl_A Myeloid antimicrobial p 49.5 1.4 4.9E-05 23.2 -1.5 16 220-235 9-24 (31)
159 1wik_A Thioredoxin-like protei 48.9 52 0.0018 22.7 6.3 45 1-45 16-66 (109)
160 2h54_A Caspase-1; allosteric s 48.5 40 0.0014 26.2 6.1 39 8-47 63-101 (178)
161 4ehd_A Caspase-3; caspase, apo 48.5 60 0.0021 27.0 7.6 74 8-87 67-143 (277)
162 3dmn_A Putative DNA helicase; 47.9 41 0.0014 25.6 6.0 60 2-76 64-123 (174)
163 2wci_A Glutaredoxin-4; redox-a 47.8 51 0.0018 24.2 6.3 53 1-53 36-94 (135)
164 3zyw_A Glutaredoxin-3; metal b 47.4 58 0.002 22.8 6.4 43 1-43 17-65 (111)
165 2va8_A SSO2462, SKI2-type heli 45.7 11 0.00039 35.6 2.9 66 1-73 77-151 (715)
166 2ql9_A Caspase-7; cysteine pro 45.6 59 0.002 25.1 6.6 40 8-48 67-106 (173)
167 3od5_A Caspase-6; caspase doma 44.9 48 0.0016 27.6 6.4 39 9-48 45-83 (278)
168 4fn4_A Short chain dehydrogena 44.9 69 0.0023 26.2 7.3 54 2-57 34-92 (254)
169 3o8b_A HCV NS3 protease/helica 44.6 36 0.0012 32.3 6.2 62 1-73 259-324 (666)
170 1rif_A DAR protein, DNA helica 44.5 16 0.00056 29.9 3.5 50 1-57 159-212 (282)
171 3tg1_B Dual specificity protei 44.1 14 0.00049 27.7 2.8 33 1-33 95-136 (158)
172 3p45_A Caspase-6; protease, hu 43.7 55 0.0019 25.5 6.1 39 9-48 68-106 (179)
173 2fp3_A Caspase NC; apoptosis, 43.1 42 0.0014 28.6 5.8 75 9-85 83-162 (316)
174 2nn3_C Caspase-1; cysteine pro 43.0 56 0.0019 27.8 6.6 39 9-48 83-121 (310)
175 3sir_A Caspase; hydrolase; 2.6 42.0 49 0.0017 27.2 6.0 54 9-64 43-99 (259)
176 2xgj_A ATP-dependent RNA helic 41.9 21 0.00072 35.6 4.2 62 1-73 131-198 (1010)
177 3grc_A Sensor protein, kinase; 41.3 82 0.0028 21.8 6.6 48 2-55 9-56 (140)
178 2wem_A Glutaredoxin-related pr 40.3 97 0.0033 22.0 7.2 43 1-43 21-70 (118)
179 1nw9_B Caspase 9, apoptosis-re 39.4 54 0.0018 27.2 5.9 54 9-64 45-101 (277)
180 2l82_A Designed protein OR32; 39.0 1E+02 0.0036 22.0 8.1 45 8-52 88-132 (162)
181 2j48_A Two-component sensor ki 38.8 75 0.0026 20.8 5.8 30 1-30 3-32 (119)
182 4f67_A UPF0176 protein LPG2838 38.7 19 0.00067 29.9 3.0 35 1-35 183-218 (265)
183 2zj8_A DNA helicase, putative 38.2 13 0.00045 35.2 2.0 66 1-73 70-144 (720)
184 1u6t_A SH3 domain-binding glut 38.1 55 0.0019 23.7 5.0 40 6-45 13-52 (121)
185 4a4z_A Antiviral helicase SKI2 37.3 28 0.00096 34.6 4.3 61 1-72 84-152 (997)
186 1fov_A Glutaredoxin 3, GRX3; a 37.3 76 0.0026 19.9 6.0 54 1-54 2-56 (82)
187 1f1j_A Caspase-7 protease; cas 35.6 78 0.0027 26.8 6.3 40 8-48 92-131 (305)
188 3gx8_A Monothiol glutaredoxin- 33.0 1.3E+02 0.0044 21.3 6.8 43 1-43 17-68 (121)
189 2khp_A Glutaredoxin; thioredox 32.8 1E+02 0.0034 20.0 7.3 52 2-53 8-60 (92)
190 3mwd_B ATP-citrate synthase; A 32.1 62 0.0021 27.9 5.2 51 2-52 83-134 (334)
191 3cnb_A DNA-binding response re 30.9 47 0.0016 23.1 3.7 48 2-55 11-60 (143)
192 2ouc_A Dual specificity protei 30.2 21 0.00072 25.6 1.6 34 1-34 85-127 (142)
193 3msz_A Glutaredoxin 1; alpha-b 29.8 1.1E+02 0.0037 19.4 5.7 33 1-33 5-38 (89)
194 1t1v_A SH3BGRL3, SH3 domain-bi 27.8 1E+02 0.0035 20.3 4.8 33 13-45 22-54 (93)
195 3i2v_A Adenylyltransferase and 27.6 22 0.00077 25.0 1.4 33 2-34 75-114 (127)
196 3i42_A Response regulator rece 26.7 58 0.002 22.2 3.5 27 2-28 6-32 (127)
197 3gr1_A Protein PRGH; type III 26.0 2.5E+02 0.0085 22.7 7.4 63 1-82 28-93 (227)
198 3d1p_A Putative thiosulfate su 25.4 71 0.0024 22.9 3.9 24 2-25 94-117 (139)
199 2wlr_A Putative thiosulfate su 24.7 54 0.0018 28.8 3.6 33 2-34 206-239 (423)
200 3fho_A ATP-dependent RNA helic 24.0 64 0.0022 29.0 4.0 65 1-73 191-265 (508)
201 3iwt_A 178AA long hypothetical 23.9 1.8E+02 0.0063 21.9 6.2 52 12-64 42-96 (178)
202 1urh_A 3-mercaptopyruvate sulf 23.5 31 0.0011 28.3 1.7 33 2-34 89-123 (280)
203 3gr0_A Protein PRGH; type III 23.4 2.5E+02 0.0086 22.1 6.9 63 1-82 28-93 (197)
204 3aay_A Putative thiosulfate su 23.4 62 0.0021 26.3 3.5 33 2-34 80-114 (277)
205 2b4a_A BH3024; flavodoxin-like 23.2 1.7E+02 0.0057 20.1 5.5 24 3-26 19-42 (138)
206 2klx_A Glutaredoxin; thioredox 22.9 1.6E+02 0.0053 18.9 5.8 51 2-54 8-60 (89)
207 1c4o_A DNA nucleotide excision 22.8 3.2E+02 0.011 25.5 8.7 64 1-64 55-145 (664)
208 3cg4_A Response regulator rece 22.5 1.9E+02 0.0065 19.7 9.2 27 2-28 10-36 (142)
209 1aba_A Glutaredoxin; electron 22.5 1.6E+02 0.0055 18.9 7.5 48 1-48 1-58 (87)
210 2eg4_A Probable thiosulfate su 22.1 71 0.0024 25.2 3.6 30 2-32 64-95 (230)
211 1uar_A Rhodanese; sulfurtransf 21.9 47 0.0016 27.2 2.5 33 2-34 82-116 (285)
212 1e0c_A Rhodanese, sulfurtransf 21.5 48 0.0016 26.9 2.4 33 2-34 84-118 (271)
213 3kto_A Response regulator rece 21.3 1.9E+02 0.0066 19.8 5.5 48 2-55 9-56 (136)
214 3hzu_A Thiosulfate sulfurtrans 21.1 68 0.0023 27.0 3.4 32 2-33 114-147 (318)
215 2lci_A Protein OR36; structura 20.8 2.2E+02 0.0074 19.7 8.2 57 1-57 53-109 (134)
216 1yt8_A Thiosulfate sulfurtrans 20.5 64 0.0022 29.4 3.3 33 2-34 325-358 (539)
217 2j6p_A SB(V)-AS(V) reductase; 20.1 57 0.0019 24.1 2.4 21 14-34 88-111 (152)
218 1z3i_X Similar to RAD54-like; 20.1 2.4E+02 0.0083 26.1 7.2 55 1-57 116-178 (644)
No 1
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=3.7e-31 Score=211.92 Aligned_cols=126 Identities=35% Similarity=0.499 Sum_probs=122.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+|+.+++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~ 116 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEK 116 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
..|+||+||+||.|+.|.+++++++.+..++..++..++.+++..+
T Consensus 117 ~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 117 ESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp HHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred HHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999998887543
No 2
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.97 E-value=9.2e-31 Score=218.51 Aligned_cols=129 Identities=36% Similarity=0.482 Sum_probs=122.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+.+++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|||||+|+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~ 112 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRA 112 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccCCc
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADDSM 129 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~~~ 129 (251)
..|+||+||+||.|+.|.+++|+++.+...+..++..++.++..++.+.
T Consensus 113 ~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 161 (212)
T 3eaq_A 113 EAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPT 161 (212)
T ss_dssp HHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCC
T ss_pred HHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCC
Confidence 9999999999999999999999999999999999999999988776543
No 3
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=210.31 Aligned_cols=127 Identities=24% Similarity=0.485 Sum_probs=119.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC---
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP--- 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P--- 77 (251)
|+||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~ 115 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQ 115 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccC
Q psy18034 78 ---CKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 78 ---~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~ 127 (251)
+++..|+||+||+||.|+.|.+++++.+.+...+..+++.++.++...+.
T Consensus 116 ~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 168 (175)
T 2rb4_A 116 GEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNA 168 (175)
T ss_dssp CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCEEECS
T ss_pred cccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcccccCC
Confidence 89999999999999999999999999999999999999999999887764
No 4
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.8e-30 Score=209.88 Aligned_cols=127 Identities=23% Similarity=0.342 Sum_probs=120.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+++.+++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~ 112 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDS 112 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSH
T ss_pred cEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCc-cHHHHHHHHHHhCCCCeeccC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSD-ELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~i~~~l~~~~~~~~~ 127 (251)
..|+||+||+||.|+.|.+++|+++. +...+..++..++.++..++.
T Consensus 113 ~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 113 DTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp HHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred HHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 99999999999999999999999875 567889999999998887763
No 5
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.97 E-value=1.9e-30 Score=208.02 Aligned_cols=127 Identities=32% Similarity=0.538 Sum_probs=118.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+|+.+++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~ 111 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK 111 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSG
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~ 127 (251)
..|+||+||+||.|+.|.+++++++.+...+..++.+++.+++..+.
T Consensus 112 ~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 112 ENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp GGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred HHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCc
Confidence 99999999999999999999999999999999999999998887764
No 6
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=9.5e-30 Score=209.21 Aligned_cols=125 Identities=31% Similarity=0.540 Sum_probs=113.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+++..++.+++.|+..|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~ 135 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEI 135 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCc-cHHHHHHHHHHhCCCCeec
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSD-ELCYYLDLLLFLGRKPVLA 125 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~i~~~l~~~~~~~ 125 (251)
..|+||+||+||.|+.|.+++|+++. +..++..++..++.....+
T Consensus 136 ~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~ 181 (191)
T 2p6n_A 136 ENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKV 181 (191)
T ss_dssp HHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcC
Confidence 99999999999999999999999976 7778888887765544333
No 7
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=3.2e-29 Score=219.59 Aligned_cols=131 Identities=34% Similarity=0.468 Sum_probs=121.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|||||+|+++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~ 109 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRA 109 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSST
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccCCccc
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADDSMKG 131 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~~~~~ 131 (251)
..|+||+||+||.|+.|.+++|+++.+..++..++..++.++..++.+..+
T Consensus 110 ~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 110 EAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp THHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred HHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 999999999999999999999999999999999999999999888765443
No 8
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=8.5e-30 Score=208.40 Aligned_cols=124 Identities=34% Similarity=0.506 Sum_probs=104.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+++..++.+++.|+..|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 48 k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~ 127 (185)
T 2jgn_A 48 LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDI 127 (185)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSH
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCee
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVL 124 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~ 124 (251)
..|+||+||+||.|+.|.+++|+++.+...+.+++..++.....
T Consensus 128 ~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 128 EEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999998887654433
No 9
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.92 E-value=3e-30 Score=208.02 Aligned_cols=126 Identities=33% Similarity=0.529 Sum_probs=120.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+++.+++.+++.|+..|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~ 111 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSG 111 (170)
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
..|+||+||+||.|+.|.+++++.+.+...+..++..++.++....
T Consensus 112 ~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 112 DTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 9999999999999999999999999999999999988887775443
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.95 E-value=2.2e-27 Score=217.63 Aligned_cols=125 Identities=32% Similarity=0.510 Sum_probs=115.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+..++.+++.|...|+.+..+||+|++.+|..++++|++|+.+|||||++++||+|+|++++|||||+|+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~ 381 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKI 381 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSH
T ss_pred CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecC-ccHHHHHHHHHHhCCCCeec
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSS-DELCYYLDLLLFLGRKPVLA 125 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~-~e~~~~~~i~~~l~~~~~~~ 125 (251)
..|+||+||+||.|+.|.+++|+++ ++.....++.+.+....+..
T Consensus 382 ~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~v 427 (434)
T 2db3_A 382 DDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTV 427 (434)
T ss_dssp HHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCC
T ss_pred HHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999995 46667777777765544433
No 11
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.95 E-value=5.3e-27 Score=212.01 Aligned_cols=127 Identities=31% Similarity=0.555 Sum_probs=123.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+++.+++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~ 357 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 357 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~ 127 (251)
..|+||+||+||.|+.|.+++++++.+...+.+++.+++..+..++.
T Consensus 358 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 358 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp HHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred HHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999999999999999999999988774
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=3.3e-26 Score=215.52 Aligned_cols=126 Identities=24% Similarity=0.415 Sum_probs=120.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC---CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA---GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~---~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
++||||+|+..++.+++.|+.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 341 ~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p 420 (563)
T 3i5x_A 341 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVP 420 (563)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCC
T ss_pred cEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCC
Confidence 5899999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
+++..|+||+||+||.|+.|.+++++.+.|..++..++...+.++....
T Consensus 421 ~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 421 SELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp SSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred CchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccc
Confidence 9999999999999999999999999999999999999999888776443
No 13
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.94 E-value=2.9e-26 Score=206.34 Aligned_cols=128 Identities=29% Similarity=0.504 Sum_probs=124.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+++.+++.+++.|+..|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 260 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~ 339 (400)
T 1s2m_A 260 QAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTA 339 (400)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSH
T ss_pred cEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccCC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADDS 128 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~~ 128 (251)
..|+||+||+||.|+.|.+++++++.+...+..++..++.++..++..
T Consensus 340 ~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 340 ETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp HHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred HHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 999999999999999999999999999999999999999999887743
No 14
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=9.4e-26 Score=213.62 Aligned_cols=126 Identities=24% Similarity=0.415 Sum_probs=120.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC---CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA---GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~---~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
++||||+|+.+++.+++.|+.. ++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 290 ~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 290 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCC
T ss_pred cEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCC
Confidence 5899999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
+++..|+||+||+||.|+.|.+++++.+.|..++..++...+..+....
T Consensus 370 ~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 418 (579)
T 3sqw_A 370 SELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 418 (579)
T ss_dssp SSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred CCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccccc
Confidence 9999999999999999999999999999999999999999888776543
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.93 E-value=3e-26 Score=207.10 Aligned_cols=122 Identities=34% Similarity=0.526 Sum_probs=114.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+.+++.+++.|...|+.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~ 357 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDI 357 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSH
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKP 122 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~ 122 (251)
..|+||+||+||.|+.|.+++|+++.+...+.++...+....
T Consensus 358 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 358 EEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp HHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998888775433
No 16
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.93 E-value=2.3e-26 Score=207.48 Aligned_cols=127 Identities=29% Similarity=0.526 Sum_probs=108.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+++.+++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 282 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~ 361 (414)
T 3eiq_A 282 QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNR 361 (414)
T ss_dssp SCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSST
T ss_pred cEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~ 127 (251)
..|+||+||+||.|+.|.+++++++.+...+.+++.+++..+...+.
T Consensus 362 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (414)
T 3eiq_A 362 ENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPL 408 (414)
T ss_dssp HHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC
T ss_pred HHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccCh
Confidence 99999999999999999999999999999999999999999887764
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=1.1e-25 Score=199.30 Aligned_cols=126 Identities=32% Similarity=0.468 Sum_probs=122.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+++.+++.+++.|+..|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|+++
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 319 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNP 319 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCH
T ss_pred cEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
..|+||+||+||.|+.|.+++++++.+...+..+++.++.++..++
T Consensus 320 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 320 ESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp HHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred HHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999999999999999999999887654
No 18
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.93 E-value=1.7e-25 Score=200.28 Aligned_cols=128 Identities=23% Similarity=0.339 Sum_probs=121.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+++.+++.+++.|...|+.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 252 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 331 (391)
T 1xti_A 252 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDS 331 (391)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSH
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCc-cHHHHHHHHHHhCCCCeeccCC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSD-ELCYYLDLLLFLGRKPVLADDS 128 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~i~~~l~~~~~~~~~~ 128 (251)
..|+||+||+||.|+.|.+++++++. +..++..++..++.++..++..
T Consensus 332 ~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 332 DTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp HHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred HHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 99999999999999999999999876 5567888999999998887743
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.93 E-value=1.2e-25 Score=202.58 Aligned_cols=127 Identities=27% Similarity=0.484 Sum_probs=118.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCC--
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPC-- 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~-- 78 (251)
++||||+++.+++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~ 347 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK 347 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCS
T ss_pred CEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ----ChhhHHHHhhhcccCCCCceEEEEecCcc-HHHHHHHHHHhCCCCeeccC
Q psy18034 79 ----KAKLFVHRVGRCARAGRSGVAYSLVSSDE-LCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 79 ----~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~i~~~l~~~~~~~~~ 127 (251)
+...|+||+||+||.|+.|.+++++.+.+ ...+..++..++..+...+.
T Consensus 348 ~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 348 DGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp SSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 56899999999999999999999998764 88899999999998887764
No 20
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.92 E-value=5.2e-25 Score=196.81 Aligned_cols=126 Identities=31% Similarity=0.542 Sum_probs=116.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCC--
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPC-- 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~-- 78 (251)
++||||+++.+++.+++.|+..|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~ 324 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLA 324 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCT
T ss_pred CEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ChhhHHHHhhhcccCCCCceEEEEecC-ccHHHHHHHHHHhC-CCCeecc
Q psy18034 79 ----KAKLFVHRVGRCARAGRSGVAYSLVSS-DELCYYLDLLLFLG-RKPVLAD 126 (251)
Q Consensus 79 ----~~~~y~qr~GR~gR~g~~g~~i~l~~~-~e~~~~~~i~~~l~-~~~~~~~ 126 (251)
++..|+||+||+||.|+.|.+++++.+ ++...+..++..++ ..+...+
T Consensus 325 ~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 325 NGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp TSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred cCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 999999999999999999999999986 45667778888877 5444443
No 21
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.92 E-value=1.7e-24 Score=203.01 Aligned_cols=116 Identities=21% Similarity=0.353 Sum_probs=110.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+..++.+++.|+..|+.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~ 317 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSH
T ss_pred cEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHH
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLL 116 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~ 116 (251)
+.|+||+||+||.|+.|.+++++++.+...+..+..
T Consensus 318 ~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 318 ESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp HHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999888776655443
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.91 E-value=1.7e-24 Score=205.58 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=108.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+|+..++.+++.|+..|+.+..+||+|++.+|..++++|+.|+.+|||||+++++|+|+|++++||+||+|.++
T Consensus 269 ~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~ 348 (591)
T 2v1x_A 269 SGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSM 348 (591)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSH
T ss_pred CeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHH
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDL 114 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i 114 (251)
+.|+||+||+||.|++|.|++++++.+...+..+
T Consensus 349 ~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 349 ENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp HHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 9999999999999999999999998777665443
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.91 E-value=4.4e-26 Score=204.18 Aligned_cols=127 Identities=32% Similarity=0.538 Sum_probs=0.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+++.+++.+++.|+..|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 261 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~ 340 (394)
T 1fuu_A 261 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK 340 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeeccC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~~ 127 (251)
..|+||+||+||.|+.|.+++++++.+...+..++.+++.++...+.
T Consensus 341 ~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 341 ENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 99999999999999999999999999999999999998888876653
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.91 E-value=5.4e-26 Score=210.22 Aligned_cols=126 Identities=27% Similarity=0.488 Sum_probs=0.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCC--
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPC-- 78 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~-- 78 (251)
++||||+|+.+++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+
T Consensus 335 ~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~ 414 (479)
T 3fmp_B 335 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK 414 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ----ChhhHHHHhhhcccCCCCceEEEEecCcc-HHHHHHHHHHhCCCCeecc
Q psy18034 79 ----KAKLFVHRVGRCARAGRSGVAYSLVSSDE-LCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 79 ----~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~i~~~l~~~~~~~~ 126 (251)
+...|+||+||+||.|+.|.+++|+.+.+ ..++..++..++.++..++
T Consensus 415 ~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 415 DGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp -----------------------------------------------------
T ss_pred ccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 56899999999999999999999998664 7788888888888776665
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.90 E-value=3.8e-24 Score=187.50 Aligned_cols=115 Identities=30% Similarity=0.550 Sum_probs=105.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
++||||+++++++.+++.|. .+..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 58999999999999999886 68899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCC
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGR 120 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~ 120 (251)
..|+||+||+||.|+.|.+++++. .|...+.++++.++.
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999999999 888888888776653
No 26
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.89 E-value=9.2e-23 Score=184.98 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=104.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEE-EEcCCCCHHHHHHHHHHHhcCCceEEEe----cccccccccccc-ccEEEEe
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISST-YIYSDLDPTARKINAAKFQTGKIRVLVV----TDVAARGIDIPS-LDAVINY 74 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~-~i~g~~~~~~r~~~~~~F~~g~~~iLv~----Td~~~~Gldi~~-v~~VI~~ 74 (251)
++||||+++.+++.+++.|+..|+.+. .+||. +|. +++|++|+.+|||| |+++++|+|+|+ +++||+|
T Consensus 254 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~ 327 (414)
T 3oiy_A 254 GILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFW 327 (414)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEE
Confidence 689999999999999999999999998 88985 344 99999999999999 999999999999 9999999
Q ss_pred cCC--CChhhHHHHhhhcccCC----CCceEEEEecCccHHHHHHHHHHhC--CCCee
Q psy18034 75 NFP--CKAKLFVHRVGRCARAG----RSGVAYSLVSSDELCYYLDLLLFLG--RKPVL 124 (251)
Q Consensus 75 d~P--~~~~~y~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~i~~~l~--~~~~~ 124 (251)
|+| +++..|+||+||+||.| +.|.+++++ .+...+..++..++ .++..
T Consensus 328 ~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~~~ 383 (414)
T 3oiy_A 328 GTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEI 383 (414)
T ss_dssp SCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccccc
Confidence 999 99999999999999988 579999998 67778888888877 54443
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.88 E-value=2.5e-23 Score=194.38 Aligned_cols=108 Identities=24% Similarity=0.311 Sum_probs=57.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC------------CCcEEEEcCCCCHHHHHHHHHHHhc-CCceEEEecccccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA------------GISSTYIYSDLDPTARKINAAKFQT-GKIRVLVVTDVAARGIDIPS 67 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~------------~~~~~~i~g~~~~~~r~~~~~~F~~-g~~~iLv~Td~~~~Gldi~~ 67 (251)
|+||||+++.+++.+++.|+.. |.....+||+|++.+|..++++|++ |+++|||||+++++|+|+|+
T Consensus 392 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~ 471 (556)
T 4a2p_A 392 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 471 (556)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC----------
T ss_pred eEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchh
Confidence 6899999999999999999876 5566677888999999999999999 99999999999999999999
Q ss_pred ccEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCccHHH
Q psy18034 68 LDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCY 110 (251)
Q Consensus 68 v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~ 110 (251)
|++||+||+|||+..|+||+|| ||. +.|.++.|+++.+...
T Consensus 472 v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 472 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp -CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 9999999999999999999999 998 7899999998876543
No 28
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.88 E-value=6.4e-24 Score=198.28 Aligned_cols=127 Identities=26% Similarity=0.466 Sum_probs=97.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCC---
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFP--- 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P--- 77 (251)
++||||+++.+++.++..|...+..+.++||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 359 ~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~ 438 (508)
T 3fho_A 359 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQ 438 (508)
T ss_dssp CEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-
T ss_pred cEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CChhhHHHHhhhcccCCCCceEEEEec-CccHHHHHHHHHHhCCCCeeccC
Q psy18034 78 ---CKAKLFVHRVGRCARAGRSGVAYSLVS-SDELCYYLDLLLFLGRKPVLADD 127 (251)
Q Consensus 78 ---~~~~~y~qr~GR~gR~g~~g~~i~l~~-~~e~~~~~~i~~~l~~~~~~~~~ 127 (251)
.++..|+||+||+||.|+.|.+++++. +.+...+..++.+++.++...+.
T Consensus 439 ~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 439 AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp ----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 889999999999999999999999997 45677888999999988877663
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=1.2e-22 Score=184.95 Aligned_cols=108 Identities=26% Similarity=0.346 Sum_probs=101.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcC--------CCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYS--------DLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g--------~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI 72 (251)
|+||||+++..++.+++.|+..|+.+..+|| +|++.+|.+++++|++|+.+|||||+++++|+|+|.+++||
T Consensus 363 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi 442 (494)
T 1wp9_A 363 KIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV 442 (494)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEE
T ss_pred eEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEE
Confidence 6899999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEecCccHH
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELC 109 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 109 (251)
+||+||++..|+||+||+||.|+ |.++.++++....
T Consensus 443 ~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 443 FYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp ESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred EeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 99999999999999999999998 9999999876543
No 30
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.88 E-value=3.6e-23 Score=192.86 Aligned_cols=112 Identities=26% Similarity=0.340 Sum_probs=80.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC------------CcEEEEcCCCCHHHHHHHHHHHhc-CCceEEEecccccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG------------ISSTYIYSDLDPTARKINAAKFQT-GKIRVLVVTDVAARGIDIPS 67 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~------------~~~~~i~g~~~~~~r~~~~~~F~~-g~~~iLv~Td~~~~Gldi~~ 67 (251)
|+||||+++.+++.++..|+..+ .....+||+|++.+|..++++|++ |+++|||||+++++|+|+|+
T Consensus 391 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~ 470 (555)
T 3tbk_A 391 KTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAE 470 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTS
T ss_pred eEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCcccc
Confidence 68999999999999999999863 344556679999999999999999 99999999999999999999
Q ss_pred ccEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHH
Q psy18034 68 LDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDL 114 (251)
Q Consensus 68 v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i 114 (251)
+++||+||+|||+..|+||+|| ||. +.|.++.|+++.+......+
T Consensus 471 v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 471 CNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999999999999 998 89999999998776555443
No 31
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=7.7e-22 Score=189.62 Aligned_cols=114 Identities=23% Similarity=0.278 Sum_probs=106.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecC----
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNF---- 76 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~---- 76 (251)
++||||+|+..++.+++.|+..|+.+..+||+|++.+|..++++|+.|+++|||||+++++|+|+|++++||++|.
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G 526 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEG 526 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCT
T ss_pred eEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHH
Q psy18034 77 -PCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLL 115 (251)
Q Consensus 77 -P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~ 115 (251)
|.+...|+||+||+||. ..|.+++++++.+..+...++
T Consensus 527 ~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 527 FLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp TTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred CCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999999999999998 789999999987665544443
No 32
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.87 E-value=2e-22 Score=185.14 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=96.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEE-------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN------- 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~------- 73 (251)
|+||||+|++.++.+++.|+..|+.+..+|| ++|..++++|++|+.+|||||+++++|+|+| +++||+
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~p 253 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKP 253 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCcccee
Confidence 6899999999999999999999999999999 3688899999999999999999999999999 999986
Q ss_pred ------------ecCCCChhhHHHHhhhcccC-CCCceEEEEe---cCccHHHHHHHHHHh
Q psy18034 74 ------------YNFPCKAKLFVHRVGRCARA-GRSGVAYSLV---SSDELCYYLDLLLFL 118 (251)
Q Consensus 74 ------------~d~P~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~e~~~~~~i~~~l 118 (251)
||.|.++.+|+||+||+||. |+.|.|++++ ++.+...+..++..+
T Consensus 254 v~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 254 VLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 99999999999999999997 6899999996 677777777777654
No 33
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.87 E-value=2.3e-22 Score=194.40 Aligned_cols=105 Identities=24% Similarity=0.257 Sum_probs=97.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc--------cccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIP--------SLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~--------~v~~VI 72 (251)
++||||+|++.++.|+..|...|+++..+||++++.+|..+.++|+.| .|+||||+++||+|++ ++.+||
T Consensus 434 pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VI 511 (844)
T 1tf5_A 434 PVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVV 511 (844)
T ss_dssp CEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEE
T ss_pred cEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEE
Confidence 489999999999999999999999999999999888887666666665 6999999999999999 788999
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
|||+|.+.+.|+||+|||||.|.+|.+++|++.+|
T Consensus 512 n~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 512 GTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp ESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred EecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 99999999999999999999999999999998766
No 34
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.87 E-value=1.1e-21 Score=188.67 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=107.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecC----
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNF---- 76 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~---- 76 (251)
++||||+|+..++.+++.|...|+.+..+||+|++.+|..++++|+.|+++|||||+++++|+|+|++++||++|.
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G 520 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEG 520 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCS
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHH
Q psy18034 77 -PCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLL 116 (251)
Q Consensus 77 -P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~ 116 (251)
|++..+|+||+||+||.| .|.+++++++.+......+..
T Consensus 521 ~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 521 FLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp GGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999999985 899999999877665555543
No 35
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.86 E-value=8.8e-23 Score=196.48 Aligned_cols=112 Identities=23% Similarity=0.363 Sum_probs=71.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC----CcEEEE--------cCCCCHHHHHHHHHHHhc-CCceEEEecccccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG----ISSTYI--------YSDLDPTARKINAAKFQT-GKIRVLVVTDVAARGIDIPS 67 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~----~~~~~i--------~g~~~~~~r~~~~~~F~~-g~~~iLv~Td~~~~Gldi~~ 67 (251)
++||||+++.+++.+++.|+..| +.+..+ ||+|++.+|.+++++|++ |+.+|||||+++++|+|+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 68999999999999999999987 888888 459999999999999998 99999999999999999999
Q ss_pred ccEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHH
Q psy18034 68 LDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDL 114 (251)
Q Consensus 68 v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i 114 (251)
+++||+||+|+++..|+||+|| ||. +.|.++.+++..+......+
T Consensus 480 v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 480 CNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999999 997 78999999988776554444
No 36
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.86 E-value=6e-22 Score=171.09 Aligned_cols=106 Identities=18% Similarity=0.295 Sum_probs=85.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CCcEEEEcCCCCHHHHHHHHHHHhcC-Cce-EEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GISSTYIYSDLDPTARKINAAKFQTG-KIR-VLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~~~~~i~g~~~~~~r~~~~~~F~~g-~~~-iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
|+||||++...++.+...|... |+.+..+||++++.+|..++++|+++ ..+ +|++|+++++|+|++.+++||+||+|
T Consensus 114 kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 114 KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRW 193 (271)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCC
T ss_pred eEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCC
Confidence 6899999999999999999885 99999999999999999999999999 677 78999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCceE--EEEecCc
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVA--YSLVSSD 106 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~--i~l~~~~ 106 (251)
|+|..|.||+||++|.|+.+.+ +.+++..
T Consensus 194 wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 194 WNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp SCTTTC--------------CCEEEEEEETT
T ss_pred CChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999997754 5666655
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.86 E-value=7.8e-22 Score=189.97 Aligned_cols=102 Identities=26% Similarity=0.423 Sum_probs=88.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC------CCcEEEEcCC--------CCHHHHHHHHHHHhcCCceEEEeccccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA------GISSTYIYSD--------LDPTARKINAAKFQTGKIRVLVVTDVAARGIDIP 66 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~------~~~~~~i~g~--------~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~ 66 (251)
++||||+|+.+++.+++.|+.. |+.+..+||+ |++.+|.+++++|++|+.+|||||+++++|+|+|
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip 481 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIK 481 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCC
T ss_pred cEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccc
Confidence 6899999999999999999987 8999999999 9999999999999999999999999999999999
Q ss_pred cccEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecC
Q psy18034 67 SLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSS 105 (251)
Q Consensus 67 ~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 105 (251)
++++||+||+|+|+..|+||+||+||. |.+++++.+
T Consensus 482 ~v~~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~ 517 (699)
T 4gl2_A 482 ECNIVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAH 517 (699)
T ss_dssp SCCCCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEE
T ss_pred cCCEEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEe
Confidence 999999999999999999999996554 355555543
No 38
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.86 E-value=5.8e-22 Score=194.14 Aligned_cols=107 Identities=24% Similarity=0.322 Sum_probs=62.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC------------CCcEEEEcCCCCHHHHHHHHHHHhc-CCceEEEecccccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA------------GISSTYIYSDLDPTARKINAAKFQT-GKIRVLVVTDVAARGIDIPS 67 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~------------~~~~~~i~g~~~~~~r~~~~~~F~~-g~~~iLv~Td~~~~Gldi~~ 67 (251)
|+||||+++.+++.++..|+.. |..+..+||+|++.+|..++++|++ |+++|||||+++++|+|+|+
T Consensus 633 kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~ 712 (797)
T 4a2q_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (797)
T ss_dssp CEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CC
T ss_pred eEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchh
Confidence 6899999999999999999873 5667778999999999999999999 99999999999999999999
Q ss_pred ccEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCccHH
Q psy18034 68 LDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELC 109 (251)
Q Consensus 68 v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 109 (251)
|++||+||+|||+..|+||+|| ||. +.|.++.|+++.+..
T Consensus 713 v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 713 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 9999999999999999999999 998 899999999886654
No 39
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.85 E-value=1.6e-21 Score=186.00 Aligned_cols=113 Identities=15% Similarity=0.097 Sum_probs=104.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEE---------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAV--------- 71 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~V--------- 71 (251)
++||||+|+++++.+++.|+..|+.+..+||+ +|.+++++|++|+.+||||||++++|+|+| +++|
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P 431 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKP 431 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEE
T ss_pred CEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecc
Confidence 68999999999999999999999999999995 678899999999999999999999999998 8888
Q ss_pred -----------EEecCCCChhhHHHHhhhcccCCC-CceEEEEec---CccHHHHHHHHHHh
Q psy18034 72 -----------INYNFPCKAKLFVHRVGRCARAGR-SGVAYSLVS---SDELCYYLDLLLFL 118 (251)
Q Consensus 72 -----------I~~d~P~~~~~y~qr~GR~gR~g~-~g~~i~l~~---~~e~~~~~~i~~~l 118 (251)
||||+|.+..+|+||+||+||.|. .|.+++|++ +.+...+..++..+
T Consensus 432 ~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 432 VILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred eecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 888999999999999999999965 899999998 78888888887765
No 40
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.85 E-value=4.4e-21 Score=182.59 Aligned_cols=105 Identities=23% Similarity=0.255 Sum_probs=94.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc--------cccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIP--------SLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~--------~v~~VI 72 (251)
++||||+|++.++.++..|...|+++..+||++.+.++..+.++|+.| .|+||||+++||+|++ +..+||
T Consensus 476 pVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVI 553 (822)
T 3jux_A 476 PVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCII 553 (822)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEE
Confidence 489999999999999999999999999999996655555555666555 6999999999999998 667999
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 73 NYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 73 ~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
||++|.+++.|+||+|||||.|.+|.+++|++.+|
T Consensus 554 nte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 554 GTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp ESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred ecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 99999999999999999999999999999999877
No 41
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.85 E-value=8.6e-22 Score=196.39 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=104.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHh-CCCcEEEEcCCCCHHHHHHHHHHHhcCC--ceEEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGL-AGISSTYIYSDLDPTARKINAAKFQTGK--IRVLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~-~~~~~~~i~g~~~~~~r~~~~~~F~~g~--~~iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
|+||||+++.+++.++..|.. .|+.+..+||+|++.+|..++++|++|+ ++|||||+++++|+|+|.+++||+||+|
T Consensus 505 k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 505 KVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp CCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCC
T ss_pred CEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCC
Confidence 689999999999999999995 5999999999999999999999999998 9999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHh
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFL 118 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l 118 (251)
|++..|+||+||+||.|+.|.++++....+......+...+
T Consensus 585 ~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 585 FNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp SSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred CCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999999999999999998766554433333334455555
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.84 E-value=5.3e-21 Score=176.13 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=93.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEec-----
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYN----- 75 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d----- 75 (251)
++||||+|+.+++.+++.|+..|+.+..+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++|||||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~ 264 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKP 264 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccc
Confidence 6899999999999999999999999999999864 46899999999999999999999999999 9999999
Q ss_pred ---------------CCCChhhHHHHhhhcccCCC-CceEEEEecC
Q psy18034 76 ---------------FPCKAKLFVHRVGRCARAGR-SGVAYSLVSS 105 (251)
Q Consensus 76 ---------------~P~~~~~y~qr~GR~gR~g~-~g~~i~l~~~ 105 (251)
.|.+..+|+||+||+||.|. .|.++++...
T Consensus 265 ~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 265 VILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8888888743
No 43
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.84 E-value=4.7e-21 Score=184.21 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=103.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEE-------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN------- 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~------- 73 (251)
++||||++++.++.+++.|+..++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|||
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p 486 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKP 486 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCE
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccc
Confidence 68999999999999999999999999999994 788999999999999999999999999999 999998
Q ss_pred -------------ecCCCChhhHHHHhhhcccC-CCCceEEEEe---cCccHHHHHHHHHHh
Q psy18034 74 -------------YNFPCKAKLFVHRVGRCARA-GRSGVAYSLV---SSDELCYYLDLLLFL 118 (251)
Q Consensus 74 -------------~d~P~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~e~~~~~~i~~~l 118 (251)
||+|.++.+|+||+||+||. |+.|.|++|+ ++.+...+..++..+
T Consensus 487 ~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 487 TILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67999999999999999999 7899999996 577777776666654
No 44
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.84 E-value=2.6e-21 Score=192.42 Aligned_cols=107 Identities=24% Similarity=0.322 Sum_probs=63.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC------------CCcEEEEcCCCCHHHHHHHHHHHhc-CCceEEEecccccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA------------GISSTYIYSDLDPTARKINAAKFQT-GKIRVLVVTDVAARGIDIPS 67 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~------------~~~~~~i~g~~~~~~r~~~~~~F~~-g~~~iLv~Td~~~~Gldi~~ 67 (251)
|+||||+++.+++.|++.|... |.....+||+|++.+|.+++++|++ |+++|||||+++++|+|+|+
T Consensus 633 rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~ 712 (936)
T 4a2w_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (936)
T ss_dssp CEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCC
T ss_pred eEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchh
Confidence 6899999999999999999986 5666777999999999999999999 99999999999999999999
Q ss_pred ccEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCccHH
Q psy18034 68 LDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELC 109 (251)
Q Consensus 68 v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 109 (251)
|++||+||+|||+..|+||+|| ||. +.|.++.+++..+..
T Consensus 713 v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 713 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp CSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9999999999999999999999 998 789999999876543
No 45
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.83 E-value=1.8e-21 Score=179.62 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=92.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEE-------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN------- 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~------- 73 (251)
++||||+|+..++.+++.|+..|+.+..+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 192 ~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~ 266 (459)
T 2z83_A 192 KTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKP 266 (459)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCE
T ss_pred CEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccc
Confidence 68999999999999999999999999999995 6778899999999999999999999999999 99999
Q ss_pred -------------ecCCCChhhHHHHhhhcccCCC-CceEEEEecCc
Q psy18034 74 -------------YNFPCKAKLFVHRVGRCARAGR-SGVAYSLVSSD 106 (251)
Q Consensus 74 -------------~d~P~~~~~y~qr~GR~gR~g~-~g~~i~l~~~~ 106 (251)
||.|.++.+|+||+||+||.|. .|.+++++.+.
T Consensus 267 ~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 267 TILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7899999999999999999997 89999999864
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.83 E-value=1.7e-21 Score=185.90 Aligned_cols=116 Identities=26% Similarity=0.322 Sum_probs=99.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEE--------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI-------- 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI-------- 72 (251)
++||||+|++.++.+++.|+..|+.+..+||+|++.+ |+++..+||||||++++|+|+| +++||
T Consensus 398 ~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ 469 (666)
T 3o8b_A 398 RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQ 469 (666)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccc
Confidence 5899999999999999999999999999999999875 5567779999999999999997 99888
Q ss_pred --Eec-----------CCCChhhHHHHhhhcccCCCCceEEEEecCccHHH--H--HHHHHHhCCCCeecc
Q psy18034 73 --NYN-----------FPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCY--Y--LDLLLFLGRKPVLAD 126 (251)
Q Consensus 73 --~~d-----------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~--~--~~i~~~l~~~~~~~~ 126 (251)
||| +|.+.+.|+||+||+|| |+.|. ++|+++.+... + ..+++..+..+....
T Consensus 470 ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~ 538 (666)
T 3o8b_A 470 TVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYE 538 (666)
T ss_dssp EEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSC
T ss_pred ccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccccc
Confidence 788 99999999999999999 99999 99998877654 3 555655555444443
No 47
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.83 E-value=6e-20 Score=176.36 Aligned_cols=121 Identities=21% Similarity=0.362 Sum_probs=105.7
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhc--CCceEEEeccccccccccccccEEEEecC---
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQT--GKIRVLVVTDVAARGIDIPSLDAVINYNF--- 76 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~--g~~~iLv~Td~~~~Gldi~~v~~VI~~d~--- 76 (251)
.+|||+|+..++.+++.|+..++.+..+||+|++.+|..+++.|++ |+.+|||||+++++|+|+ ++++||++|+
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc
Confidence 5899999999999999999999999999999999999999999999 889999999999999999 8999999999
Q ss_pred -----------CCChhhHHHHhhhcccCCCC---ceEEEEecCccHHHHHHHHHHhCCCCee
Q psy18034 77 -----------PCKAKLFVHRVGRCARAGRS---GVAYSLVSSDELCYYLDLLLFLGRKPVL 124 (251)
Q Consensus 77 -----------P~~~~~y~qr~GR~gR~g~~---g~~i~l~~~~e~~~~~~i~~~l~~~~~~ 124 (251)
|.+...|+||+||+||.|.. |.++ ++.+.+...+.++......++..
T Consensus 402 ~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~-~l~~~d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 402 SINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVT-TMNHEDLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp ----------CBCCHHHHHHHHTTBTCTTSSCSSEEEE-ESSTTHHHHHHHHHHSCCCCCCC
T ss_pred ccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEE-EEecchHHHHHHHHhcCcchhhh
Confidence 88999999999999999965 5544 44556666666666655444443
No 48
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.83 E-value=1.1e-20 Score=182.37 Aligned_cols=105 Identities=23% Similarity=0.207 Sum_probs=99.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccc------------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSL------------ 68 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v------------ 68 (251)
.+||||+|+..++.|+..|+..|+++..+||++.+.++..+.++|+.| .|+||||+|+||+||+..
T Consensus 443 pvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~ 520 (853)
T 2fsf_A 443 PVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALEN 520 (853)
T ss_dssp CEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSS
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhccc
Confidence 489999999999999999999999999999999988888888899888 699999999999999973
Q ss_pred -------------------------cEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 69 -------------------------DAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 69 -------------------------~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
.+||||++|.|...|.||+|||||.|.+|.+++|++.++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 521 PTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred chhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999998776
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.81 E-value=8.2e-20 Score=176.90 Aligned_cols=106 Identities=21% Similarity=0.186 Sum_probs=98.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccc------------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSL------------ 68 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v------------ 68 (251)
++||||+|++.++.|+..|...|+++..+||++.+.++..+.++|+.| .|+||||+++||+||+.+
T Consensus 462 pvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~ 539 (922)
T 1nkt_A 462 PVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLR 539 (922)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHh
Confidence 489999999999999999999999999999999888887788888887 699999999999999975
Q ss_pred ----------------------------------------cEEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCccH
Q psy18034 69 ----------------------------------------DAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDEL 108 (251)
Q Consensus 69 ----------------------------------------~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 108 (251)
.+||||++|.+...|.||+||+||.|.+|.+++|++.++.
T Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 540 ERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999997764
No 50
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.81 E-value=8.3e-20 Score=183.88 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=99.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEE-EEcCCCCHHHHHHHHHHHhcCCceEEEe----cccccccccccc-ccEEEEe
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISST-YIYSDLDPTARKINAAKFQTGKIRVLVV----TDVAARGIDIPS-LDAVINY 74 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~-~i~g~~~~~~r~~~~~~F~~g~~~iLv~----Td~~~~Gldi~~-v~~VI~~ 74 (251)
++||||+|+..++.++..|+..|+.+. .+||. |.+ +++|++|+.+|||| |++++||+|+|+ |++||||
T Consensus 311 ~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~ 384 (1104)
T 4ddu_A 311 GILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFW 384 (1104)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEE
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEE
Confidence 689999999999999999999999998 99992 555 99999999999999 999999999999 9999999
Q ss_pred cCCC------------------------------------------------------------------------Chhh
Q psy18034 75 NFPC------------------------------------------------------------------------KAKL 82 (251)
Q Consensus 75 d~P~------------------------------------------------------------------------~~~~ 82 (251)
|+|. ++.+
T Consensus 385 d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~t 464 (1104)
T 4ddu_A 385 GTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYT 464 (1104)
T ss_dssp SCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHH
T ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhh
Confidence 9998 7889
Q ss_pred HHHHhhhcccCCCCc--eEEEEecCccHHHHHHHHHHhC
Q psy18034 83 FVHRVGRCARAGRSG--VAYSLVSSDELCYYLDLLLFLG 119 (251)
Q Consensus 83 y~qr~GR~gR~g~~g--~~i~l~~~~e~~~~~~i~~~l~ 119 (251)
|+||+|||||.|..| .+++++..++...+..+++.++
T Consensus 465 Yihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 465 YIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred hhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 999999999976543 4555655578888888887765
No 51
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.2e-19 Score=181.38 Aligned_cols=114 Identities=19% Similarity=0.292 Sum_probs=102.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc---------------------------------------EEEEcCCCCHHHHHHH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS---------------------------------------STYIYSDLDPTARKIN 41 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~---------------------------------------~~~i~g~~~~~~r~~~ 41 (251)
++||||+|+..|+.++..|...++. +..+||+|++.+|..+
T Consensus 345 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~v 424 (1010)
T 2xgj_A 345 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 424 (1010)
T ss_dssp SEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHH
Confidence 5899999999999999999875442 7889999999999999
Q ss_pred HHHHhcCCceEEEeccccccccccccccEEEE----ecC----CCChhhHHHHhhhcccCCC--CceEEEEecCc-cHHH
Q psy18034 42 AAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN----YNF----PCKAKLFVHRVGRCARAGR--SGVAYSLVSSD-ELCY 110 (251)
Q Consensus 42 ~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~----~d~----P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~-e~~~ 110 (251)
++.|++|.++|||||+++++|+|+|.+++||+ ||. |+++..|+||+||+||.|. .|.+++++.+. +...
T Consensus 425 e~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~ 504 (1010)
T 2xgj_A 425 EILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQV 504 (1010)
T ss_dssp HHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHH
T ss_pred HHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHH
Confidence 99999999999999999999999999999999 999 9999999999999999997 59999999865 5555
Q ss_pred HHHH
Q psy18034 111 YLDL 114 (251)
Q Consensus 111 ~~~i 114 (251)
+..+
T Consensus 505 ~~~l 508 (1010)
T 2xgj_A 505 AKGM 508 (1010)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.81 E-value=3.2e-19 Score=172.65 Aligned_cols=107 Identities=22% Similarity=0.322 Sum_probs=94.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC------------------------------------CcEEEEcCCCCHHHHHHHHHH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG------------------------------------ISSTYIYSDLDPTARKINAAK 44 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~------------------------------------~~~~~i~g~~~~~~r~~~~~~ 44 (251)
++||||+++..++.++..|.... ..+..+||+|++.+|..+++.
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 58999999999999999998642 248999999999999999999
Q ss_pred HhcCCceEEEeccccccccccccccEEEE----ec-------CCCChhhHHHHhhhcccCCC--CceEEEEecCcc
Q psy18034 45 FQTGKIRVLVVTDVAARGIDIPSLDAVIN----YN-------FPCKAKLFVHRVGRCARAGR--SGVAYSLVSSDE 107 (251)
Q Consensus 45 F~~g~~~iLv~Td~~~~Gldi~~v~~VI~----~d-------~P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~e 107 (251)
|++|..+|||||+++++|+|+|++++||+ || .|.+...|.||+||+||.|. .|.|+.++++.+
T Consensus 334 f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 334 FRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999999999999999999999 99 89999999999999999884 799999987765
No 53
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.80 E-value=6.4e-20 Score=184.24 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=100.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEe----ccccccccccccc-cEEEEec
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVV----TDVAARGIDIPSL-DAVINYN 75 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~----Td~~~~Gldi~~v-~~VI~~d 75 (251)
++||||+|+..++.+++.|+.. +.+..+||+|. .++++|++|+.+|||| ||++++|+|+|+| ++|||||
T Consensus 277 ~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~ 350 (1054)
T 1gku_B 277 GGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVG 350 (1054)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEES
T ss_pred CEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeC
Confidence 5899999999999999999988 99999999984 6789999999999999 9999999999996 9999999
Q ss_pred CC-----------------------------------------------------------------------CChhhHH
Q psy18034 76 FP-----------------------------------------------------------------------CKAKLFV 84 (251)
Q Consensus 76 ~P-----------------------------------------------------------------------~~~~~y~ 84 (251)
+| .+..+|+
T Consensus 351 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yi 430 (1054)
T 1gku_B 351 CPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYI 430 (1054)
T ss_dssp CCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHH
T ss_pred CCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHh
Confidence 99 7999999
Q ss_pred HHhhhcccCCCCc--eEEEEecCccHHHHHHHHHHhCC
Q psy18034 85 HRVGRCARAGRSG--VAYSLVSSDELCYYLDLLLFLGR 120 (251)
Q Consensus 85 qr~GR~gR~g~~g--~~i~l~~~~e~~~~~~i~~~l~~ 120 (251)
||+||+||.|..| .+++++..++...+..+++.++.
T Consensus 431 Qr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 431 QGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred hhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 9999999988776 48889888898999899888875
No 54
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1e-19 Score=183.33 Aligned_cols=107 Identities=20% Similarity=0.306 Sum_probs=93.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc---------------------------------------EEEEcCCCCHHHHHHH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS---------------------------------------STYIYSDLDPTARKIN 41 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~---------------------------------------~~~i~g~~~~~~r~~~ 41 (251)
++||||+++..|+.++..|...++. +..+||+|++.+|..+
T Consensus 443 ~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v 522 (1108)
T 3l9o_A 443 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 522 (1108)
T ss_dssp CEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHH
Confidence 5899999999999999998654322 7899999999999999
Q ss_pred HHHHhcCCceEEEeccccccccccccccEEEEecCCC--------ChhhHHHHhhhcccCC--CCceEEEEecCcc
Q psy18034 42 AAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPC--------KAKLFVHRVGRCARAG--RSGVAYSLVSSDE 107 (251)
Q Consensus 42 ~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~--------~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e 107 (251)
++.|++|.++|||||+++++|+|+|.+++||+++.|+ ++..|+||+||+||.| ..|.+++++.+..
T Consensus 523 ~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 523 EILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp HHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred HHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 9999999999999999999999999999999888754 5566999999999999 5788888887653
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.80 E-value=1.4e-19 Score=165.85 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=89.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccE----------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDA---------- 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~---------- 70 (251)
++||||+++.+++.+++.|+..|+.+..+||+ +|.+++++|++|+.+|||||+++++|+|+| +.+
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~ 247 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKP 247 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccc
Confidence 68999999999999999999999999999997 577899999999999999999999999999 554
Q ss_pred -------EEEecCCCChhhHHHHhhhcccCCC-CceEEEEe
Q psy18034 71 -------VINYNFPCKAKLFVHRVGRCARAGR-SGVAYSLV 103 (251)
Q Consensus 71 -------VI~~d~P~~~~~y~qr~GR~gR~g~-~g~~i~l~ 103 (251)
||+++.|.+..+|+||+||+||.|. .|.++++.
T Consensus 248 v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 248 ILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred eecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6889999999999999999999985 55666665
No 56
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.80 E-value=2.3e-19 Score=173.84 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=105.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC---------------------------------CCcEEEEcCCCCHHHHHHHHHHHhc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA---------------------------------GISSTYIYSDLDPTARKINAAKFQT 47 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~---------------------------------~~~~~~i~g~~~~~~r~~~~~~F~~ 47 (251)
++||||+|+..++.++..|... ...+..+||+|++.+|..+.+.|++
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 318 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 5899999999999999998753 1248999999999999999999999
Q ss_pred CCceEEEeccccccccccccccEEEE----ec----CCCChhhHHHHhhhcccCC--CCceEEEEecCccHHHHHHHHHH
Q psy18034 48 GKIRVLVVTDVAARGIDIPSLDAVIN----YN----FPCKAKLFVHRVGRCARAG--RSGVAYSLVSSDELCYYLDLLLF 117 (251)
Q Consensus 48 g~~~iLv~Td~~~~Gldi~~v~~VI~----~d----~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~~~i~~~ 117 (251)
|..+|||||+++++|+|+|.+++||+ || .|.++..|.||+||+||.| ..|.|+.++++.+... .++.+
T Consensus 319 g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~--~~~~~ 396 (720)
T 2zj8_A 319 GIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE--VMNHY 396 (720)
T ss_dssp TSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH--HHHHH
T ss_pred CCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH--HHHHH
Confidence 99999999999999999999999999 87 6999999999999999988 4789999998877332 23345
Q ss_pred hCCCCeec
Q psy18034 118 LGRKPVLA 125 (251)
Q Consensus 118 l~~~~~~~ 125 (251)
+.......
T Consensus 397 ~~~~~~~i 404 (720)
T 2zj8_A 397 IFGKPEKL 404 (720)
T ss_dssp TTSCCCCC
T ss_pred hcCCCCCc
Confidence 54444433
No 57
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.80 E-value=2.7e-20 Score=181.64 Aligned_cols=107 Identities=20% Similarity=0.333 Sum_probs=100.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHh-----------CCCcEEEEcCCCCHHHHHHHHHHHh-----cCCceEEEeccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGL-----------AGISSTYIYSDLDPTARKINAAKFQ-----TGKIRVLVVTDVAARGID 64 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~-----------~~~~~~~i~g~~~~~~r~~~~~~F~-----~g~~~iLv~Td~~~~Gld 64 (251)
++||||+++..++.+++.|.. .++.+..+||+|++.+|..+++.|+ .|..+|||||+++++|+|
T Consensus 305 ~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~Gid 384 (773)
T 2xau_A 305 DILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLT 384 (773)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCC
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcC
Confidence 489999999999999999985 5788999999999999999999999 999999999999999999
Q ss_pred cccccEEEEecC------------------CCChhhHHHHhhhcccCCCCceEEEEecCccH
Q psy18034 65 IPSLDAVINYNF------------------PCKAKLFVHRVGRCARAGRSGVAYSLVSSDEL 108 (251)
Q Consensus 65 i~~v~~VI~~d~------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 108 (251)
+|++++||++++ |.+..+|+||+||+||. +.|.|+.|+++.+.
T Consensus 385 Ip~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 385 IDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred cCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999887 89999999999999998 79999999986554
No 58
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.79 E-value=2.5e-19 Score=173.11 Aligned_cols=108 Identities=22% Similarity=0.370 Sum_probs=98.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC------------------------------CCcEEEEcCCCCHHHHHHHHHHHhcCCc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA------------------------------GISSTYIYSDLDPTARKINAAKFQTGKI 50 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~------------------------------~~~~~~i~g~~~~~~r~~~~~~F~~g~~ 50 (251)
++||||+++..++.++..|... +..+..+||+|++++|..+.+.|++|+.
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 323 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 323 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC
Confidence 5899999999999999988753 1357889999999999999999999999
Q ss_pred eEEEeccccccccccccccEEEE----ec---CCCChhhHHHHhhhcccCC--CCceEEEEecCccH
Q psy18034 51 RVLVVTDVAARGIDIPSLDAVIN----YN---FPCKAKLFVHRVGRCARAG--RSGVAYSLVSSDEL 108 (251)
Q Consensus 51 ~iLv~Td~~~~Gldi~~v~~VI~----~d---~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~ 108 (251)
+|||||+++++|+|+|++++||+ || .|.+...|.||+||+||.| ..|.|+.++++.+.
T Consensus 324 ~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 324 KVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp CEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred eEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999999999999999999 77 7999999999999999988 47999999988773
No 59
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.79 E-value=5.5e-19 Score=163.87 Aligned_cols=107 Identities=18% Similarity=0.292 Sum_probs=94.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CCcEEEEcCCCCHHHHHHHHHHHhcC-Cce-EEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GISSTYIYSDLDPTARKINAAKFQTG-KIR-VLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~~~~~i~g~~~~~~r~~~~~~F~~g-~~~-iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
|+||||+++..++.+...|... |..+..+||+|++.+|.+++++|+++ ..+ +|++|+++++|+|+|.+++||+||+|
T Consensus 343 k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~ 422 (500)
T 1z63_A 343 KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRW 422 (500)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCC
T ss_pred cEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCC
Confidence 6899999999999999999886 99999999999999999999999999 555 89999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCceE--EEEecCcc
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVA--YSLVSSDE 107 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~--i~l~~~~e 107 (251)
|++..|.||+||++|.|+.+.+ +.++....
T Consensus 423 ~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 423 WNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp SCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred CCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999999999999987655 55666553
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.78 E-value=3.1e-19 Score=180.51 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=101.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecC-C
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNF-P 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~-P 77 (251)
|++|||+++.+++.+++.|+.. +..+..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||.++. +
T Consensus 814 qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 814 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 893 (1151)
T ss_dssp EEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTS
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCC
Confidence 5899999999999999999988 889999999999999999999999999999999999999999999999999998 5
Q ss_pred CChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
+++..|+||+||+||.|+.|.|++++.+.+
T Consensus 894 ~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 894 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp SCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 899999999999999999999999987643
No 61
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.78 E-value=3.1e-19 Score=165.92 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=94.1
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEec-cccccccccccccEEEEecCCCCh
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVT-DVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~T-d~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
+||||+ ..+++.+++.|...+..+..+||+|++.+|.++++.|++|+.+||||| +++++|+|+|++++||++++|+++
T Consensus 351 ~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~ 429 (510)
T 2oca_A 351 FVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSK 429 (510)
T ss_dssp EEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSC
T ss_pred EEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCH
Confidence 567776 888899999999998899999999999999999999999999999999 999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEec
Q psy18034 81 KLFVHRVGRCARAGRSGVAYSLVS 104 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~g~~i~l~~ 104 (251)
..|.||+||+||.|+.|.++.++.
T Consensus 430 ~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 430 IIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999998775555544
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.77 E-value=1.2e-19 Score=167.25 Aligned_cols=101 Identities=24% Similarity=0.371 Sum_probs=91.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCCh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKA 80 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~ 80 (251)
|+||||+++..++.+++.|. +..+||++++.+|.+++++|++|+.+|||||+++++|+|+|++++||++|.|+++
T Consensus 351 k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~ 425 (472)
T 2fwr_A 351 KIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSA 425 (472)
T ss_dssp CBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCC
T ss_pred cEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCH
Confidence 68999999999999999883 5679999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCC-ce--EEEEecCc
Q psy18034 81 KLFVHRVGRCARAGRS-GV--AYSLVSSD 106 (251)
Q Consensus 81 ~~y~qr~GR~gR~g~~-g~--~i~l~~~~ 106 (251)
..|+||+||+||.|+. +. .+.+++.+
T Consensus 426 ~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 426 REYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999854 34 44556543
No 63
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.76 E-value=1.1e-19 Score=177.02 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=96.2
Q ss_pred CEEEEcCcH--------HHHHHHHHHHHh---CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccccccccccccc
Q psy18034 1 MTVVFTATK--------YHVEYVHKILGL---AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~--------~~~~~l~~~L~~---~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~ 69 (251)
|++|||++. ..++.+++.|.. .++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|+++
T Consensus 580 qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~ 659 (780)
T 1gm5_A 580 QAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRAN 659 (780)
T ss_dssp CBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCC
T ss_pred cEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCC
Confidence 578999865 457888999988 478899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC-ChhhHHHHhhhcccCCCCceEEEEecCccHH
Q psy18034 70 AVINYNFPC-KAKLFVHRVGRCARAGRSGVAYSLVSSDELC 109 (251)
Q Consensus 70 ~VI~~d~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 109 (251)
+||++|.|. +...|.||+||+||.|+.|.|++++.+.+..
T Consensus 660 ~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 660 VMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp EEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred EEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 999999995 7889999999999999999999998754433
No 64
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.76 E-value=3.3e-18 Score=164.02 Aligned_cols=106 Identities=10% Similarity=0.160 Sum_probs=98.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCce---EEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIR---VLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~---iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
|+||||++...++.+...|...|+.+..+||+|++.+|.+++++|+++... +|++|+++++|+|++.+++||+||+|
T Consensus 418 k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~ 497 (644)
T 1z3i_X 418 KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPD 497 (644)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCC
T ss_pred EEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCC
Confidence 689999999999999999999999999999999999999999999998764 89999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCce--EEEEecCc
Q psy18034 78 CKAKLFVHRVGRCARAGRSGV--AYSLVSSD 106 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~--~i~l~~~~ 106 (251)
||+..+.|++||++|.|+... ++.+++..
T Consensus 498 wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 498 WNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp SSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 999999999999999998764 45566655
No 65
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.75 E-value=2.3e-18 Score=163.14 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=85.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCC--------cEEEEcCCCCHHHHHHHHHHHhcCCce---EEEecccccccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGI--------SSTYIYSDLDPTARKINAAKFQTGKIR---VLVVTDVAARGIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~--------~~~~i~g~~~~~~r~~~~~~F~~g~~~---iLv~Td~~~~Gldi~~v~ 69 (251)
|+||||+++.+++.+++.|...+. .+..+||++++ +|..++++|++|+.+ |||||+++++|+|+|.++
T Consensus 441 k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~ 519 (590)
T 3h1t_A 441 KTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCK 519 (590)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEE
T ss_pred cEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchhee
Confidence 589999999999999999987643 27789999864 799999999998876 899999999999999999
Q ss_pred EEEEecCCCChhhHHHHhhhcccCCC
Q psy18034 70 AVINYNFPCKAKLFVHRVGRCARAGR 95 (251)
Q Consensus 70 ~VI~~d~P~~~~~y~qr~GR~gR~g~ 95 (251)
+||++++|+++..|+||+||+||.|.
T Consensus 520 ~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 520 NVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEEEEecCCChHHHHHHHhhhcccCc
Confidence 99999999999999999999999874
No 66
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.74 E-value=9.4e-18 Score=167.57 Aligned_cols=114 Identities=21% Similarity=0.281 Sum_probs=95.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCC---------------------------------------cEEEEcCCCCHHHHHHH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGI---------------------------------------SSTYIYSDLDPTARKIN 41 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~---------------------------------------~~~~i~g~~~~~~r~~~ 41 (251)
++||||+|+..|+.++..|...|+ .+..+||+|++.+|..+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 589999999999999999987665 57899999999999999
Q ss_pred HHHHhcCCceEEEeccccccccccccccEEE--------EecCCCChhhHHHHhhhcccCC--CCceEEEEec--CccHH
Q psy18034 42 AAKFQTGKIRVLVVTDVAARGIDIPSLDAVI--------NYNFPCKAKLFVHRVGRCARAG--RSGVAYSLVS--SDELC 109 (251)
Q Consensus 42 ~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI--------~~d~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~--~~e~~ 109 (251)
++.|+.|.++|||||+++++|+|+|++.+|+ +++.|.++..|+||+|||||.| ..|.++.++. ..+..
T Consensus 418 ~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~ 497 (997)
T 4a4z_A 418 EILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIA 497 (997)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHH
T ss_pred HHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHH
Confidence 9999999999999999999999999955555 2334449999999999999998 4677777773 33444
Q ss_pred HHHHH
Q psy18034 110 YYLDL 114 (251)
Q Consensus 110 ~~~~i 114 (251)
.+..+
T Consensus 498 ~~~~~ 502 (997)
T 4a4z_A 498 TFKEV 502 (997)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.5e-17 Score=161.46 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=104.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCce---EEEeccccccccccccccEEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIR---VLVVTDVAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~---iLv~Td~~~~Gldi~~v~~VI~~d~P 77 (251)
|+||||.....++.|...|...|+.+..+||++++.+|..++++|+++... +|++|+++++|+|++.+++||+||+|
T Consensus 574 kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 574 RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSD 653 (800)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCC
T ss_pred eEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCC
Confidence 689999999999999999999999999999999999999999999997554 99999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCce--EEEEecCc--cHHHHHHHHHHhC
Q psy18034 78 CKAKLFVHRVGRCARAGRSGV--AYSLVSSD--ELCYYLDLLLFLG 119 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~--~i~l~~~~--e~~~~~~i~~~l~ 119 (251)
|||..+.||+||++|.|+... ++.|++.. |...+......+.
T Consensus 654 wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 654 WNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp SCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 999999999999999998754 45566654 4445544444443
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.66 E-value=2.6e-16 Score=163.98 Aligned_cols=114 Identities=16% Similarity=0.264 Sum_probs=99.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----------------------------------CCcEEEEcCCCCHHHHHHHHHHHh
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----------------------------------GISSTYIYSDLDPTARKINAAKFQ 46 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----------------------------------~~~~~~i~g~~~~~~r~~~~~~F~ 46 (251)
++||||+|+..|+.++..|... ..++.++||+|++.+|..+.+.|+
T Consensus 1157 ~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~ 1236 (1724)
T 4f92_B 1157 PVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFS 1236 (1724)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHH
Confidence 4899999999999887766321 245889999999999999999999
Q ss_pred cCCceEEEeccccccccccccccEEEE----e------cCCCChhhHHHHhhhcccCCC--CceEEEEecCccHHHHHHH
Q psy18034 47 TGKIRVLVVTDVAARGIDIPSLDAVIN----Y------NFPCKAKLFVHRVGRCARAGR--SGVAYSLVSSDELCYYLDL 114 (251)
Q Consensus 47 ~g~~~iLv~Td~~~~Gldi~~v~~VI~----~------d~P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~e~~~~~~i 114 (251)
+|.++|||||+.+++|+|+|...+||. | ..|.++..|.||+|||||.|. .|.+++++.+.+..++..+
T Consensus 1237 ~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1237 SGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp HTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 999999999999999999999999993 3 347789999999999999987 6999999998887776543
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.64 E-value=3.2e-16 Score=163.33 Aligned_cols=114 Identities=23% Similarity=0.331 Sum_probs=99.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-------------------------------------CCcEEEEcCCCCHHHHHHHHH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-------------------------------------GISSTYIYSDLDPTARKINAA 43 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-------------------------------------~~~~~~i~g~~~~~~r~~~~~ 43 (251)
++||||+|+..|+.+++.|... ..+++++||+|++.+|..+.+
T Consensus 319 ~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~ 398 (1724)
T 4f92_B 319 QVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVED 398 (1724)
T ss_dssp CEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHH
Confidence 5899999999888888777531 235889999999999999999
Q ss_pred HHhcCCceEEEeccccccccccccccEEEE----ec------CCCChhhHHHHhhhcccCCC--CceEEEEecCccHHHH
Q psy18034 44 KFQTGKIRVLVVTDVAARGIDIPSLDAVIN----YN------FPCKAKLFVHRVGRCARAGR--SGVAYSLVSSDELCYY 111 (251)
Q Consensus 44 ~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~----~d------~P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~e~~~~ 111 (251)
.|++|.++|||||+.++.|+|+|..++||. || .|.++..|.||+|||||.|. .|.++.+..+.+..++
T Consensus 399 ~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~ 478 (1724)
T 4f92_B 399 LFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 478 (1724)
T ss_dssp HHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHH
T ss_pred HHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHH
Confidence 999999999999999999999999999995 55 35689999999999999874 6999999999888877
Q ss_pred HHH
Q psy18034 112 LDL 114 (251)
Q Consensus 112 ~~i 114 (251)
..+
T Consensus 479 ~~l 481 (1724)
T 4f92_B 479 LSL 481 (1724)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.48 E-value=1.8e-13 Score=136.78 Aligned_cols=118 Identities=13% Similarity=0.111 Sum_probs=93.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC------------CcEEE-EcCC----------C----------CHH-----------
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG------------ISSTY-IYSD----------L----------DPT----------- 36 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~------------~~~~~-i~g~----------~----------~~~----------- 36 (251)
++||||+|+.+|..+++.|...+ +.+.. +||+ + ++.
T Consensus 539 kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~d 618 (1038)
T 2w00_A 539 NAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIRE 618 (1038)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHH
Confidence 48999999999999999998764 55544 4442 2 222
Q ss_pred ------------------HHHHHHHHHhcCCceEEEeccccccccccccccEEEEecCCCChhhHHHHhhhcccCCCC--
Q psy18034 37 ------------------ARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRS-- 96 (251)
Q Consensus 37 ------------------~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~-- 96 (251)
.|..++++|++|+++|||+||++.+|+|+|.+ +++++|.|.+...|+|++||++|.+..
T Consensus 619 yn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K 697 (1038)
T 2w00_A 619 YNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATK 697 (1038)
T ss_dssp HHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTC
T ss_pred HHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCC
Confidence 47889999999999999999999999999999 789999999999999999999998753
Q ss_pred --ceEEEEecCccHHHHHHHHHHhCC
Q psy18034 97 --GVAYSLVSSDELCYYLDLLLFLGR 120 (251)
Q Consensus 97 --g~~i~l~~~~e~~~~~~i~~~l~~ 120 (251)
|.++.|+.. .......+..+.+.
T Consensus 698 ~~G~IVdf~~~-~~~l~~Al~~y~~~ 722 (1038)
T 2w00_A 698 TFGNIVTFRDL-ERSTIDAITLFGDK 722 (1038)
T ss_dssp CSEEEEESSCC-HHHHHHHHHHTSCS
T ss_pred CcEEEEEcccc-HHHHHHHHHHHhCC
Confidence 777777653 23333445545443
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.51 E-value=1.6e-07 Score=88.03 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=62.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEE--ecccccccccccc----ccEEEEe
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLV--VTDVAARGIDIPS----LDAVINY 74 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv--~Td~~~~Gldi~~----v~~VI~~ 74 (251)
+++|||+|....+.+++.|.. .. ..++|.. .+|.+.++.|+.+. .||+ +|+.+++|+|+|+ +++||++
T Consensus 386 ~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~ 459 (540)
T 2vl7_A 386 SVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLA 459 (540)
T ss_dssp EEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEE
T ss_pred CEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEE
Confidence 379999999999999998865 23 4566664 46888999999864 5776 8999999999997 8999999
Q ss_pred cCCCC-h-----------------------------hhHHHHhhhcccCCCCceEEEEec
Q psy18034 75 NFPCK-A-----------------------------KLFVHRVGRCARAGRSGVAYSLVS 104 (251)
Q Consensus 75 d~P~~-~-----------------------------~~y~qr~GR~gR~g~~g~~i~l~~ 104 (251)
++|.. + ..+.|.+||+-|....--++.++.
T Consensus 460 ~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 460 GLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp SCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 99832 1 234588899888654433344443
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.98 E-value=2.6e-05 Score=76.30 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=34.1
Q ss_pred EEEEecCCCChhhHHHHhhhcccCCCCceEEEEecCcc
Q psy18034 70 AVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107 (251)
Q Consensus 70 ~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 107 (251)
+||--..+.|...=.|-.||+||-|.+|.+-.+++-++
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 79999999999999999999999999999988877554
No 73
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.65 E-value=0.0003 Score=61.43 Aligned_cols=104 Identities=9% Similarity=-0.012 Sum_probs=75.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccc-----cccccEEEEec
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGID-----IPSLDAVINYN 75 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gld-----i~~v~~VI~~d 75 (251)
|++||++.....+.+..+|...|+....+.|.....++. -.+....+.+.|...+-|+| +...+.||-||
T Consensus 127 kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~D 201 (328)
T 3hgt_A 127 ETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLD 201 (328)
T ss_dssp EEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECS
T ss_pred EEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCCCCcCcccccCCCCCEEEEEC
Confidence 689999999999999999999999999999986543221 12455666666777777776 67889999999
Q ss_pred CCCChhhH-HHHhhhcccCC--C--CceEEEEecCccHH
Q psy18034 76 FPCKAKLF-VHRVGRCARAG--R--SGVAYSLVSSDELC 109 (251)
Q Consensus 76 ~P~~~~~y-~qr~GR~gR~g--~--~g~~i~l~~~~e~~ 109 (251)
.-|++..= +|.+-|+.|.| + .-.++-+++..-.+
T Consensus 202 sdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 202 TTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp TTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 99999985 89888888873 2 34667777766544
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.30 E-value=0.0007 Score=64.34 Aligned_cols=74 Identities=18% Similarity=0.278 Sum_probs=52.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc--ccccccccc--cccEEEEecC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD--VAARGIDIP--SLDAVINYNF 76 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td--~~~~Gldi~--~v~~VI~~d~ 76 (251)
.++||++|....+.+++.|+. .... ...+|+..++...+++|+ ++-.||++|. .+.+|+|+| .+.+||-..+
T Consensus 450 ~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~l 525 (620)
T 4a15_A 450 NTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGL 525 (620)
T ss_dssp CEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSC
T ss_pred CEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcC
Confidence 378999999999999888862 2322 555666778999999999 8888999974 899999998 5678998887
Q ss_pred CC
Q psy18034 77 PC 78 (251)
Q Consensus 77 P~ 78 (251)
|.
T Consensus 526 Pf 527 (620)
T 4a15_A 526 PF 527 (620)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.31 E-value=0.03 Score=52.11 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=52.0
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEec--cccccccccc-----cccEEEEe
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVT--DVAARGIDIP-----SLDAVINY 74 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~T--d~~~~Gldi~-----~v~~VI~~ 74 (251)
++||++|....+.+++. .+..+..-..+++. ...++.|+.....||++| ..+.+|+|+| .+.+||-.
T Consensus 396 ~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~ 469 (551)
T 3crv_A 396 VLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIV 469 (551)
T ss_dssp EEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEE
T ss_pred EEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEE
Confidence 79999999998888873 35455433335554 446777854445899998 6999999999 47888887
Q ss_pred cCCC
Q psy18034 75 NFPC 78 (251)
Q Consensus 75 d~P~ 78 (251)
.+|.
T Consensus 470 ~lPf 473 (551)
T 3crv_A 470 GIPY 473 (551)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7763
No 76
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.29 E-value=0.011 Score=57.70 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=62.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-cccccccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-AARGIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-~~~Gldi~~v~~VI~ 73 (251)
+++|.++|+.-+.+.++.+... |+.+..+||+++..++...++...+|..+|+|+|.. +...+++.+++.||-
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 6899999999888888777654 789999999999999999999999999999999964 344577888888774
No 77
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.75 E-value=0.023 Score=50.43 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=60.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHh---CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccc----cccccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGL---AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAA----RGIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~---~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~----~Gldi~~v~~VI~ 73 (251)
++||.++|+.-+.++++.++. .|+.+..+||+.+..++...++.+..|..+|+|+|+-.- .-++...+++||-
T Consensus 66 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 66 KSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEE
Confidence 589999999999999999988 588999999999999999999999999999999996322 1144557777764
No 78
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.24 E-value=0.08 Score=53.52 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=61.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHh---CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccc-c---ccccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGL---AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAA-R---GIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~---~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~-~---Gldi~~v~~VI~ 73 (251)
++||.++|+.-+.++++.++. .++.+..+||+++..+|...++.+..|..+|+|+|.-.- + -+++..+++||-
T Consensus 123 ~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 123 KSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEE
T ss_pred eEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEE
Confidence 589999999999999999998 477999999999998899999999999999999996221 1 144567887774
No 79
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.21 E-value=0.11 Score=52.78 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=60.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-ccccccccccccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-VAARGIDIPSLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-~~~~Gldi~~v~~VI 72 (251)
+++|.|+|+.-+.+.++.+... ++.+..++|..+..++...++....|..+|+|+|. .+...+.+.++++||
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 5799999999998888887643 67899999999999999999999999999999994 455557777777666
No 80
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.10 E-value=0.26 Score=39.38 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=50.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc------cccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA------ARGIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~------~~Gldi~~v~ 69 (251)
++||.|+|+.-++++++.++.. +..+..++|+.+...+.. .+..+..+|+|+|.-. ...+++..++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 160 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHIK 160 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccCC
Confidence 5899999999999998888765 788999999988766544 4455677999999521 1234556666
Q ss_pred EEE
Q psy18034 70 AVI 72 (251)
Q Consensus 70 ~VI 72 (251)
+||
T Consensus 161 ~lV 163 (220)
T 1t6n_A 161 HFI 163 (220)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 81
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.68 E-value=0.26 Score=40.28 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=49.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc-ccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAAR-GIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~-Gldi~~v~~ 70 (251)
++||.|+|+.-+.++++.++.. ++.+..++|+.+.......+.. ..+|+|+|. .+.+ .+++..+++
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 179 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTY 179 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTCCE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccccE
Confidence 4899999999999887777654 8899999999987766554433 478999995 2222 245666666
Q ss_pred EE
Q psy18034 71 VI 72 (251)
Q Consensus 71 VI 72 (251)
||
T Consensus 180 lV 181 (242)
T 3fe2_A 180 LV 181 (242)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 82
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.39 E-value=0.19 Score=46.42 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=53.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++||.++++.-+....+.|+..|+.+..++|+.+..++.........|..+|+++|+
T Consensus 67 ~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 67 LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 378999999999999999999999999999999999999999999999999999995
No 83
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.87 E-value=0.2 Score=47.13 Aligned_cols=57 Identities=21% Similarity=0.231 Sum_probs=52.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHH--hcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKF--QTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F--~~g~~~iLv~Td 57 (251)
++||.++++.-+....+.|...|+.+..++|+++..++...+..+ ..+..+|+++|+
T Consensus 86 ~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 86 FTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 479999999999999999999999999999999999999888888 578899999997
No 84
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.69 E-value=0.49 Score=38.96 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=49.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----cc--ccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AA--RGIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~--~Gldi~~v~ 69 (251)
++||.++|+.-+..+++.++.. ++.+..++|+.+...+...+ .+..+|+|+|.- +. .++++..++
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~ 188 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRALK 188 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTTCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccccC
Confidence 4899999999999888877665 78899999998866544332 246789999952 11 245556666
Q ss_pred EEEE
Q psy18034 70 AVIN 73 (251)
Q Consensus 70 ~VI~ 73 (251)
+||-
T Consensus 189 ~lVi 192 (249)
T 3ber_A 189 YLVM 192 (249)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5553
No 85
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=91.94 E-value=0.52 Score=38.09 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=48.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc------cccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA------ARGIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~------~~Gldi~~v~ 69 (251)
++||.|+|+.-+.++++.++.. ++.+..++|+.+..++...+ ...+|+|+|.-. ...+++..++
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~ 168 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGSIR 168 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGGCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccccCC
Confidence 5899999999999999888765 67889999998876654433 357899999621 1234555565
Q ss_pred EEE
Q psy18034 70 AVI 72 (251)
Q Consensus 70 ~VI 72 (251)
+||
T Consensus 169 ~lV 171 (230)
T 2oxc_A 169 LFI 171 (230)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 86
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.81 E-value=0.68 Score=36.36 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=40.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++||.|+|+.-+.++++.++.. +..+..++|+.+..+... .. .+..+|+|+|.
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~ 130 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATP 130 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECH
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCH
Confidence 5899999999999988887654 578889999987655432 22 35678999996
No 87
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.39 E-value=0.72 Score=36.19 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=48.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----cc-cccccccccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AA-RGIDIPSLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~-~Gldi~~v~~VI 72 (251)
++||.|+|+..+..+++.++.. ++.+..++|+.+.......+. ...+|+|+|.- +. ..+++..+++||
T Consensus 74 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 149 (207)
T 2gxq_A 74 RALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEVAV 149 (207)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSEEE
T ss_pred cEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceEEE
Confidence 4899999999999999999877 467888999887654443332 24789999951 11 234455666555
Q ss_pred E
Q psy18034 73 N 73 (251)
Q Consensus 73 ~ 73 (251)
-
T Consensus 150 i 150 (207)
T 2gxq_A 150 L 150 (207)
T ss_dssp E
T ss_pred E
Confidence 3
No 88
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.97 E-value=0.47 Score=38.14 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=43.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC---CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----c-ccccccccccEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA---GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----A-ARGIDIPSLDAV 71 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~---~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~-~~Gldi~~v~~V 71 (251)
++||.++|+.-+.++++.++.. +..+..++|+.+...+... +. ...+|+|+|.- . ...+++..+++|
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~l 171 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSITYL 171 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTCCEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccceEE
Confidence 4799999999999999988875 7788999998765544332 32 34789999952 1 123455566655
Q ss_pred E
Q psy18034 72 I 72 (251)
Q Consensus 72 I 72 (251)
|
T Consensus 172 V 172 (228)
T 3iuy_A 172 V 172 (228)
T ss_dssp E
T ss_pred E
Confidence 5
No 89
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.95 E-value=0.51 Score=38.36 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=42.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc-ccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAAR-GIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~-Gldi~~v~~ 70 (251)
++||.++|+..+..+++.++.. +..+..++|+.+... ..+....+..+|+|+|. .+.+ .+++..+++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 5899999999999999888765 567888888865433 33455567789999994 2223 245556666
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 177 lVi 179 (237)
T 3bor_A 177 FVL 179 (237)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 90
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=90.79 E-value=0.83 Score=37.30 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=47.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc-----cc-ccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-----AR-GIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~-----~~-Gldi~~v~~ 70 (251)
++||.|+|+.-+.++++.++.. ++.+..++|+.+.......+ ....+|+|+|.-. .+ .+++..+++
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 177 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCKY 177 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCCE
Confidence 5899999999999988887664 57788899988765443322 3467899999621 11 245566666
Q ss_pred EE
Q psy18034 71 VI 72 (251)
Q Consensus 71 VI 72 (251)
||
T Consensus 178 lV 179 (253)
T 1wrb_A 178 IV 179 (253)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 91
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.87 E-value=1.4 Score=36.43 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=48.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccc--ccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAA--RGIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~--~Gldi~~v~ 69 (251)
++||.++|+.-+.++++.++.. +..+..++|+......... ...+ .+|+|+|. .+. .++++..++
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~ 203 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKNLQ 203 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTTCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccccCC
Confidence 4899999999999998888764 6678889998876554433 3334 78999994 111 235566666
Q ss_pred EEE
Q psy18034 70 AVI 72 (251)
Q Consensus 70 ~VI 72 (251)
+||
T Consensus 204 ~lV 206 (262)
T 3ly5_A 204 CLV 206 (262)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 92
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=89.30 E-value=0.82 Score=36.87 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=39.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++||.|+|+.-+..+++.++.. ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 5899999999999999888775 47889999987655443322 4678999995
No 93
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.67 E-value=1.3 Score=38.14 Aligned_cols=70 Identities=10% Similarity=0.096 Sum_probs=52.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc------cccccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA------ARGIDIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~------~~Gldi~~v~ 69 (251)
++||.|+|+.-++++++.++.. ++.+..++|+.+...... .+..+..+|+|+|.-. ...+++..++
T Consensus 78 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 154 (391)
T 1xti_A 78 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHIK 154 (391)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCS
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccccC
Confidence 5899999999999998888765 788999999988766554 3445677899999521 2235667788
Q ss_pred EEEE
Q psy18034 70 AVIN 73 (251)
Q Consensus 70 ~VI~ 73 (251)
+||-
T Consensus 155 ~vVi 158 (391)
T 1xti_A 155 HFIL 158 (391)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 94
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.43 E-value=1.8 Score=37.75 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=50.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----ccc-ccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AAR-GIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~-Gldi~~v~~ 70 (251)
++||.++|+.-+.++++.++.. ++.+..++|+.+..+.... . ....+|+|+|.- +.. .+++..+++
T Consensus 103 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 178 (417)
T 2i4i_A 103 ISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---L-ERGCHLLVATPGRLVDMMERGKIGLDFCKY 178 (417)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH---H-TTCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred cEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH---h-hCCCCEEEEChHHHHHHHHcCCcChhhCcE
Confidence 3899999999999998888754 6789999999887654432 2 235789999962 122 356677777
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 179 iVi 181 (417)
T 2i4i_A 179 LVL 181 (417)
T ss_dssp EEE
T ss_pred EEE
Confidence 773
No 95
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=88.27 E-value=2.5 Score=30.49 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=45.5
Q ss_pred EEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q psy18034 3 VVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLV 54 (251)
Q Consensus 3 iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv 54 (251)
+||.+.......+...++..|..+..++++.+...|.+-++.|......+--
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrt 57 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRT 57 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEE
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceee
Confidence 6788888888999999999999999999999999999999999877655543
No 96
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=88.02 E-value=0.72 Score=36.80 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=41.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc------ccccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA------ARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~------~~Gldi~~v~~ 70 (251)
++||.++|+..+.++++.++.. ++.+..++|+.+..+.... +. ..+|+|+|.-. ....++..+++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 158 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKIKM 158 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhCcE
Confidence 5899999999999988887764 6788899998765544332 22 37899999521 22345556666
Q ss_pred EE
Q psy18034 71 VI 72 (251)
Q Consensus 71 VI 72 (251)
||
T Consensus 159 iV 160 (224)
T 1qde_A 159 FI 160 (224)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 97
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=87.69 E-value=0.51 Score=37.70 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=45.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc-ccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAAR-GIDIP 66 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~-Gldi~ 66 (251)
++||.|+|+.-+.++++.++.. +..+..++|+.+...... .+ .+..+|+|+|. .+.+ .+++.
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 149 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALDVH 149 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCCGG
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCCcC
Confidence 5899999999999988877654 578888999875443221 11 23567999995 2222 24555
Q ss_pred cccEEE
Q psy18034 67 SLDAVI 72 (251)
Q Consensus 67 ~v~~VI 72 (251)
.+++||
T Consensus 150 ~~~~lV 155 (219)
T 1q0u_A 150 TAHILV 155 (219)
T ss_dssp GCCEEE
T ss_pred cceEEE
Confidence 666555
No 98
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=86.57 E-value=0.81 Score=45.95 Aligned_cols=71 Identities=10% Similarity=0.140 Sum_probs=53.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CC----cEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-cccccc-cccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GI----SSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-AARGID-IPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~----~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-~~~Gld-i~~v~~ 70 (251)
++||.++|+.-+.++++.++.. ++ .+..+||+.+..++....+.++. .+|+|+|+- +..-+. +..+++
T Consensus 101 ~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~~ 178 (1054)
T 1gku_B 101 RCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHFDF 178 (1054)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCSE
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccCCE
Confidence 5899999999999988888754 56 78999999999888877888777 899999962 111111 456666
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 179 lVi 181 (1054)
T 1gku_B 179 IFV 181 (1054)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 99
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.89 E-value=1.4 Score=39.34 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=50.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccc-cccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARG-IDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~G-ldi~~v~~ 70 (251)
++||.++|++-+.++++.++.. ++.+..++|+.+...+...+ ....+|+|+|. .+.++ +++..+++
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~ 206 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDTRF 206 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTCCE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccCCe
Confidence 4899999999999998888765 57788999999876544332 24578999995 22333 56677887
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 207 lVl 209 (434)
T 2db3_A 207 VVL 209 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 100
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=83.70 E-value=1.1 Score=38.04 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=46.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc------c-cccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA------A-RGIDIPSL 68 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~------~-~Gldi~~v 68 (251)
++||.++|+.-+.+++..++.. ++.+...+|+.+...+. ....+|+|+|.-. . ..+++..+
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 4899999999999988877764 46778888876532211 3456899999632 1 24667777
Q ss_pred cEEEE
Q psy18034 69 DAVIN 73 (251)
Q Consensus 69 ~~VI~ 73 (251)
.++|-
T Consensus 237 ~~lVl 241 (300)
T 3fmo_B 237 KVFVL 241 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 77764
No 101
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=83.68 E-value=4.3 Score=35.21 Aligned_cols=69 Identities=9% Similarity=0.034 Sum_probs=50.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc-ccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAAR-GIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~-Gldi~~v~~ 70 (251)
++||.|+|+.-+.++++.++.. ++.+..++|+.+..+....+. ...+|+|+|. .+.+ .+++..+++
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~ 182 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRAIKM 182 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhheeE
Confidence 5899999999999999888765 578888999988766544332 2458999994 3333 355667777
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 183 vVi 185 (410)
T 2j0s_A 183 LVL 185 (410)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 102
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=83.66 E-value=3.7 Score=35.44 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=49.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----ccc-ccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AAR-GIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~-Gldi~~v~~ 70 (251)
++||.|+++.-+.++++.++.. ++.+..++|+......... ..+..+|+|+|.- +.+ ..++..+++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~ 166 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDCSL 166 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccCCE
Confidence 5899999999999888888765 6788899999876543321 2456789999942 223 356677777
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 167 vIi 169 (400)
T 1s2m_A 167 FIM 169 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 103
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=83.41 E-value=3 Score=36.55 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=50.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CC---cEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-cc-----cccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GI---SSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-AA-----RGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~---~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-~~-----~Gldi~~v~~ 70 (251)
++||.|+++.-+..+.+.+... +. .+..+||+....++..... ..+|+|+|.- +. ..+.....++
T Consensus 54 ~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~~~~ 128 (494)
T 1wp9_A 54 KVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLEDVSL 128 (494)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTSCSE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhhceE
Confidence 5899999999999999888876 65 8999999998877655443 3579999952 22 1355667777
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 129 vIi 131 (494)
T 1wp9_A 129 IVF 131 (494)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 104
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=81.88 E-value=1.2 Score=40.40 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=48.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc-----ccc-c-cccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-----ARG-I-DIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~-----~~G-l-di~~v~ 69 (251)
++||.|+|+.-+..+++.++.. ++.+..++|+.+...+...+. +..+|+|+|.-. ..+ + .+..++
T Consensus 54 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 129 (555)
T 3tbk_A 54 KVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSVFT 129 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGGCS
T ss_pred EEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCcccccccCC
Confidence 5899999999998888877765 899999999986554432222 136799999521 122 3 566777
Q ss_pred EEEE
Q psy18034 70 AVIN 73 (251)
Q Consensus 70 ~VI~ 73 (251)
+||-
T Consensus 130 ~vVi 133 (555)
T 3tbk_A 130 LMIF 133 (555)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 105
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=81.80 E-value=3.3 Score=35.57 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=49.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc-----c-cccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-----A-RGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~-----~-~Gldi~~v~~ 70 (251)
++||.|+++.-+.++++.+... ++.+..++|+.+..+....+. ..+|+|+|.-. . ..+++..+++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 165 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKIKM 165 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhCcE
Confidence 5899999999999988877654 688999999998776655444 36799999421 1 2344566777
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 166 vIi 168 (394)
T 1fuu_A 166 FIL 168 (394)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 106
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=81.37 E-value=0.99 Score=36.58 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=45.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----ccc---ccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AAR---GIDIPSL 68 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~---Gldi~~v 68 (251)
++||.++|+.-+.++++.++.. ++.+..++|+..... .......+..+|+|+|.- +.+ ++++..+
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 176 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASV 176 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTC
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccC
Confidence 5899999999999999888775 667777766532211 111223456789999942 112 3566667
Q ss_pred cEEEE
Q psy18034 69 DAVIN 73 (251)
Q Consensus 69 ~~VI~ 73 (251)
++||-
T Consensus 177 ~~lVi 181 (245)
T 3dkp_A 177 EWLVV 181 (245)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 66653
No 107
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=80.44 E-value=3.4 Score=34.57 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=49.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc-----cc-ccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-----AR-GIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~-----~~-Gldi~~v~~ 70 (251)
++||.|+++.-+.++++.++.. +..+..++|+.+....... +. ..+|+|+|.-. .. .+++..+++
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 132 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSFEI 132 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGCSE
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhCcE
Confidence 5899999999999999888754 5789999999887654432 22 37899999521 22 345667777
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 133 iVi 135 (337)
T 2z0m_A 133 VII 135 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 108
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=80.17 E-value=1.7 Score=39.36 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=45.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc-----ccc-c-cccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-----ARG-I-DIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~-----~~G-l-di~~v~ 69 (251)
++||.|+|+.-+..+.+.++.. ++.+..+||+.+...+...+. ...+|+|+|.-. ..| + .+..++
T Consensus 57 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 132 (556)
T 4a2p_A 57 KVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSIFT 132 (556)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTTCS
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCcccccccCC
Confidence 5899999999999888888765 899999999987655433222 136799999522 222 3 566777
Q ss_pred EEEE
Q psy18034 70 AVIN 73 (251)
Q Consensus 70 ~VI~ 73 (251)
+||-
T Consensus 133 ~vVi 136 (556)
T 4a2p_A 133 LMIF 136 (556)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 109
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=80.13 E-value=2.6 Score=41.17 Aligned_cols=51 Identities=12% Similarity=0.043 Sum_probs=39.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHh----CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGL----AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
+++|.|+|+.-|...++.+.. .|+.+.+++|+++...|.... .++|+|+|+
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 478999999988777666544 489999999999987655432 378999996
No 110
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=79.69 E-value=1.7 Score=29.80 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=29.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 55 ~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 55 PLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 4789999988889999999999999778888864
No 111
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=79.19 E-value=3 Score=40.35 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=46.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----cccc-c-cccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AARG-I-DIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~G-l-di~~v~ 69 (251)
++||.|+|+..+..+...++.. ++.+..+||+.+...+...+. +..+|+|+|.- +.++ + .+..++
T Consensus 298 ~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 373 (797)
T 4a2q_A 298 KVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSIFT 373 (797)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGGCS
T ss_pred eEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhccccccccCC
Confidence 5899999999999888877765 899999999987655433222 25789999952 1222 3 566777
Q ss_pred EEEE
Q psy18034 70 AVIN 73 (251)
Q Consensus 70 ~VI~ 73 (251)
+||-
T Consensus 374 ~iVi 377 (797)
T 4a2q_A 374 LMIF 377 (797)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7773
No 112
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=78.70 E-value=1.7 Score=30.85 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=30.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 57 ~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 57 KYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred eEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4789999988899999999999999999999864
No 113
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=78.50 E-value=3.7 Score=40.08 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=40.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHh----CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGL----AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
+++|.|+|+.-|...++.+.. .|+.+.++.|+++..+|.... ..+|+++|+
T Consensus 126 ~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 126 GVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 478999999988877766644 489999999999987665432 368999996
No 114
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.98 E-value=7.4 Score=32.78 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=48.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc-----cc-ccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-----AR-GIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~-----~~-Gldi~~v~~ 70 (251)
++||.|+++.-++++++.++.. ++.+..++|+.+.......+. ..+|+|+|.-. .. .+++..+++
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 150 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNVKY 150 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTSCCE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCcccccCCE
Confidence 5899999999999998888764 678889999987665544332 46899999521 11 245667777
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 151 iIi 153 (367)
T 1hv8_A 151 FIL 153 (367)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 115
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=74.78 E-value=1.9 Score=29.93 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=29.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
+++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 59 ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 59 YYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp EEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred EEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 789999988899999999999998888888853
No 116
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=74.43 E-value=1.6 Score=30.88 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=28.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDL 33 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~ 33 (251)
++++|.+-......+..|+..|+.+..+.||+
T Consensus 59 ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 59 YYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp EEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 68999998888999999999999998888885
No 117
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=73.30 E-value=7.8 Score=33.41 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=50.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc-ccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAAR-GIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~-Gldi~~v~~ 70 (251)
++||.++|+..+.++++.++.. +..+...+|+.+.... .+....+..+|+|+|. .+.+ .+++..+++
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~ 186 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 186 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcE
Confidence 5899999999999988888765 6778888888765433 4556667889999995 2222 345666776
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 187 vVi 189 (414)
T 3eiq_A 187 FVL 189 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 118
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=73.16 E-value=2.2 Score=33.35 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=32.3
Q ss_pred CEEEEcCcHHHHHH-HHHHHHhC---CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEY-VHKILGLA---GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~-l~~~L~~~---~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++||.|+++..++. +.+.+... ++.+..++|+.+...+...+. +..+|+|+|.
T Consensus 84 ~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 84 KVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred cEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 57899999988877 55555443 678888888764332221111 1467888885
No 119
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=73.13 E-value=2.9 Score=29.40 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=28.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
.+++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 54 ~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 54 DIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred eEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3789999999999999999999996 777888853
No 120
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=73.12 E-value=3.3 Score=38.96 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=48.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----cccc-c-cccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AARG-I-DIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~G-l-di~~v~ 69 (251)
++||.++|+..+....+.++.. ++.+..++|+.+...+...+. ...+|+|+|.- +..| + ++..++
T Consensus 63 ~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~ 138 (696)
T 2ykg_A 63 KVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIFT 138 (696)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGCS
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCccccccccc
Confidence 5799999999999888888765 789999999986433322221 24789999952 2223 3 566777
Q ss_pred EEEE
Q psy18034 70 AVIN 73 (251)
Q Consensus 70 ~VI~ 73 (251)
+||-
T Consensus 139 ~vVi 142 (696)
T 2ykg_A 139 LMIF 142 (696)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 121
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=72.92 E-value=6.6 Score=38.67 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=39.7
Q ss_pred CEEEEcCcHHHHHHHHHHHH----hCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILG----LAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~----~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
+++|.|+|+.-+...++.+. ..|+.+.++.|+++..+|.... .++|+++|+
T Consensus 154 ~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 154 GVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 47899999988876666554 4499999999999987765533 268999996
No 122
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=72.68 E-value=1.9 Score=30.10 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=29.1
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
+++||.+-..+...+..|...|+.+..+.|++.
T Consensus 59 iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 59 YYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp EEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred EEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 689999988889999999999998888888853
No 123
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=71.26 E-value=5.3 Score=39.52 Aligned_cols=51 Identities=24% Similarity=0.202 Sum_probs=39.8
Q ss_pred CEEEEcCcHHHHHHHHHHHH----hCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILG----LAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~----~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
+++|.++|+.-|...++.+. ..|+.+.++.|+++..+|.... .++|+++|.
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 47899999987776666554 4499999999999987766543 378999996
No 124
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=70.03 E-value=4 Score=40.37 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=45.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----cccc-c-cccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AARG-I-DIPSLD 69 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~G-l-di~~v~ 69 (251)
++||.|+|+..+..++..++.. ++.+..+||+.+...+...+. +..+|+|+|.- +.++ + .+..++
T Consensus 298 ~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~ 373 (936)
T 4a2w_A 298 KVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSIFT 373 (936)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGGCS
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccCCC
Confidence 5899999999999888877765 899999999986654332222 13679999952 1222 3 456677
Q ss_pred EEEE
Q psy18034 70 AVIN 73 (251)
Q Consensus 70 ~VI~ 73 (251)
+||-
T Consensus 374 liVi 377 (936)
T 4a2w_A 374 LMIF 377 (936)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7773
No 125
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=69.22 E-value=10 Score=34.62 Aligned_cols=70 Identities=10% Similarity=0.028 Sum_probs=49.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc-----cc--cccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-----AR--GIDI 65 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~-----~~--Gldi 65 (251)
++||.++|+.-+.++++.++.. +..+..++|+.+... .+..+..+..+|+|+|.-. .+ ...+
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 224 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 224 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhcccccc
Confidence 5899999999999999888763 356788888876544 3445555678999999632 12 2345
Q ss_pred ccccEEEE
Q psy18034 66 PSLDAVIN 73 (251)
Q Consensus 66 ~~v~~VI~ 73 (251)
..+++||-
T Consensus 225 ~~~~~lVi 232 (563)
T 3i5x_A 225 RFVDYKVL 232 (563)
T ss_dssp TTCCEEEE
T ss_pred ccceEEEE
Confidence 66777663
No 126
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=68.64 E-value=10 Score=34.88 Aligned_cols=70 Identities=10% Similarity=0.028 Sum_probs=49.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--------CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc-----cc--cccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--------GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-----AR--GIDI 65 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--------~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~-----~~--Gldi 65 (251)
++||.++|+.-+.++++.++.. .+.+..++|+.+... .+..+..+..+|+|+|.-. .+ ...+
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 5899999999999998888763 356778888876543 3445555678999999521 12 2355
Q ss_pred ccccEEEE
Q psy18034 66 PSLDAVIN 73 (251)
Q Consensus 66 ~~v~~VI~ 73 (251)
..+++||-
T Consensus 174 ~~~~~lVi 181 (579)
T 3sqw_A 174 RFVDYKVL 181 (579)
T ss_dssp TTCCEEEE
T ss_pred ccCCEEEE
Confidence 67777663
No 127
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=68.28 E-value=4.1 Score=36.79 Aligned_cols=66 Identities=9% Similarity=-0.052 Sum_probs=48.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC----CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-cccc--cccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG----ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-AARG--IDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~----~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-~~~G--ldi~~v~~VI~ 73 (251)
++||.|+++.-++++++.++..+ ..+..++|+.+..++ ..+..+|+|+|.- +.+. ..+.++++||-
T Consensus 159 ~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~liIi 231 (510)
T 2oca_A 159 KILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMMMN 231 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEEEE
Confidence 58999999999999999998762 468889998776553 4577899999952 2222 34556666664
No 128
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=67.91 E-value=7.4 Score=31.50 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=35.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCCHHHHHHHHHHHhcCCceEEEec
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLDPTARKINAAKFQTGKIRVLVVT 56 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~T 56 (251)
+++|+|+++.-++++.+.+...+.. +..++|+.. ...+|+|+|
T Consensus 135 ~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T 178 (237)
T 2fz4_A 135 PTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVST 178 (237)
T ss_dssp CEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEe
Confidence 5799999999999999999888888 888888764 245778887
No 129
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=67.17 E-value=4.4 Score=26.99 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=24.8
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
+++||.+-..+...+..|+..|+....+.|++.
T Consensus 44 ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~ 76 (85)
T 2jtq_A 44 VKVYCNAGRQSGQAKEILSEMGYTHVENAGGLK 76 (85)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTCSSEEEEEETT
T ss_pred EEEEcCCCchHHHHHHHHHHcCCCCEEeccCHH
Confidence 688999888888888999998886333337654
No 130
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=66.82 E-value=6.1 Score=27.81 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=28.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
.++|||.+-..+...+..|+..|+....+.|++.
T Consensus 58 ~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 58 KVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred EEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4789999988888999999999987677788864
No 131
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=65.13 E-value=1.5 Score=41.43 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=45.4
Q ss_pred CEEEEcCcHHHHHHH-HHHHHhCC---CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-cc-----------cccc
Q psy18034 1 MTVVFTATKYHVEYV-HKILGLAG---ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-AA-----------RGID 64 (251)
Q Consensus 1 k~iIF~~t~~~~~~l-~~~L~~~~---~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-~~-----------~Gld 64 (251)
++||.++++.-+..+ .+.|+..+ +.+..++|+.+..++...+. +..+|+|+|.- +. ..+.
T Consensus 58 ~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~ 133 (699)
T 4gl2_A 58 KVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGVQ 133 (699)
T ss_dssp CBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CCC
T ss_pred eEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhcccccccccee
Confidence 478999999988888 88887763 79999999986554433222 56789999952 22 1246
Q ss_pred cccccEEEE
Q psy18034 65 IPSLDAVIN 73 (251)
Q Consensus 65 i~~v~~VI~ 73 (251)
+..+++||-
T Consensus 134 ~~~~~lvVi 142 (699)
T 4gl2_A 134 LSDFSLIII 142 (699)
T ss_dssp GGGCSEEEE
T ss_pred cccCcEEEE
Confidence 677777773
No 132
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=65.02 E-value=5.7 Score=35.36 Aligned_cols=44 Identities=18% Similarity=0.081 Sum_probs=37.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++||.|+++.-+.++.+.+...|.. +..+||+... ..+|+|+|.
T Consensus 135 ~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 135 PTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 5899999999999999999998999 9999998752 457888884
No 133
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=64.88 E-value=6.3 Score=29.38 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=27.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
.+||||.+-..+...+..|+..|+. +..+.|++.
T Consensus 82 ~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 82 PVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp CEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred EEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3688898877777888888888884 778888874
No 134
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=64.34 E-value=4 Score=28.59 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=28.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
.++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 60 ~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 60 PVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4789999988888999999999985 778888864
No 135
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=62.70 E-value=6.3 Score=39.80 Aligned_cols=62 Identities=16% Similarity=0.021 Sum_probs=48.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccc-cccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARG-IDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~G-ldi~~v~~VI~ 73 (251)
++||-++|+.-+.+.++.+......+..++|+++ .++..+|+|+|+ .+.+| ..+..+.+||-
T Consensus 229 rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVI 296 (1108)
T 3l9o_A 229 RVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIF 296 (1108)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEE
Confidence 4789999999999999999887668999999986 246788999993 44444 33667887774
No 136
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=62.60 E-value=30 Score=26.00 Aligned_cols=40 Identities=8% Similarity=-0.088 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC
Q psy18034 8 TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG 48 (251)
Q Consensus 8 t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g 48 (251)
|...++.|.+.|+..|+.+ .++.+++..+-.+.+++|...
T Consensus 39 t~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHHHHh
Confidence 5568899999999999996 567789999999999999765
No 137
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=61.77 E-value=4.4 Score=29.51 Aligned_cols=34 Identities=15% Similarity=-0.051 Sum_probs=28.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 84 ~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 84 NIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred eEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4789999988888899999999985 778889864
No 138
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=61.15 E-value=4.7 Score=29.56 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=28.7
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
+||||.+-..+...+..|+..|+. +..+.|++.
T Consensus 89 ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 89 FVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp EEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred EEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 789999988888999999999996 888889864
No 139
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=60.33 E-value=4.8 Score=30.07 Aligned_cols=33 Identities=3% Similarity=0.056 Sum_probs=28.5
Q ss_pred EEEEcCcH--HHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 2 TVVFTATK--YHVEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~--~~~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
+||||.+- ..+...+..|+..|+.+..+.|++.
T Consensus 75 ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 75 IITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp EEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred EEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 68999987 5788899999999999888999864
No 140
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=60.25 E-value=2.9 Score=30.33 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=27.7
Q ss_pred EEEEcCcHHH--HHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 2 TVVFTATKYH--VEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~--~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
++|||.+-.. +...+..|+..|+.+..+.|++.
T Consensus 74 ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 74 YVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp EEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred EEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 6899998766 78889999999999888888864
No 141
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=58.59 E-value=7.3 Score=28.94 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=28.1
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
+++||.+...+...+..|+..|+. +..+.|++.
T Consensus 59 ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 59 IYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred EEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 689999998999999999999986 777778853
No 142
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=58.27 E-value=5.7 Score=29.34 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=28.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCC-cEEEEcCCCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGI-SSTYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~-~~~~i~g~~~ 34 (251)
.+||||.+-..+...+..|+..|+ .+..+.|++.
T Consensus 84 ~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 84 PVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred eEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 478999998888889999999999 4888889964
No 143
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=57.33 E-value=9.2 Score=36.19 Aligned_cols=66 Identities=9% Similarity=0.133 Sum_probs=48.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHh---CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccccc-cccccEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGL---AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARGID-IPSLDAV 71 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~---~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~Gld-i~~v~~V 71 (251)
++++.++++.-+.+.++.++. .|+.+..++|+....++ ..+..+|+|+|+ .+.++.. +..+++|
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~v 142 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCL 142 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcCEE
Confidence 589999999999999998853 37899999998765432 134788999996 2333333 6678887
Q ss_pred EE
Q psy18034 72 IN 73 (251)
Q Consensus 72 I~ 73 (251)
|-
T Consensus 143 Ii 144 (702)
T 2p6r_A 143 VV 144 (702)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 144
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=57.33 E-value=20 Score=29.96 Aligned_cols=40 Identities=8% Similarity=-0.157 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC
Q psy18034 8 TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG 48 (251)
Q Consensus 8 t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g 48 (251)
+...++.|.+.|+..|+.| .++.+++..+-.+.+++|...
T Consensus 47 t~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQLM 86 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 4578999999999999997 567789999999999999764
No 145
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=56.60 E-value=25 Score=29.81 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=39.3
Q ss_pred EEEEcCc-----------HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhc
Q psy18034 2 TVVFTAT-----------KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQT 47 (251)
Q Consensus 2 ~iIF~~t-----------~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~ 47 (251)
+||+++. ..+++.|.+.|+..|+.| .++.+++..+-.+.+++|..
T Consensus 63 aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 63 ALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSV-DVKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp EEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHHHh
Confidence 6788876 678999999999999997 46778999999999999965
No 146
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=56.10 E-value=71 Score=24.97 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=73.0
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc----ccccccccccccEEEEecCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD----VAARGIDIPSLDAVINYNFP 77 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td----~~~~Gldi~~v~~VI~~d~P 77 (251)
.++.+++..-.+.+.+.....+..+....++++. -....++. ....+|+|+-. .+.+-+++|-+ +.|
T Consensus 7 I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~--~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iPVV------~I~ 77 (196)
T 2q5c_A 7 IALISQNENLLNLFPKLALEKNFIPITKTASLTR--ASKIAFGL-QDEVDAIISRGATSDYIKKSVSIPSI------SIK 77 (196)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHH--HHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSCEE------EEC
T ss_pred EEEEEccHHHHHHHHHHHhhhCCceEEEECCHHH--HHHHHHHh-cCCCeEEEECChHHHHHHHhCCCCEE------EEc
Confidence 5677788777776667666667777778888643 34445555 67788999853 34445666655 467
Q ss_pred CChhhHHHHhhhcccCCCCceEEEEecCccHHHHHHHHHHhCCCCeecc
Q psy18034 78 CKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRKPVLAD 126 (251)
Q Consensus 78 ~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~i~~~l~~~~~~~~ 126 (251)
.|.-.+++-.-++.+.+. ..++.-+ ++-...+..+...++.++....
T Consensus 78 ~s~~Dil~al~~a~~~~~-kIavvg~-~~~~~~~~~~~~ll~~~i~~~~ 124 (196)
T 2q5c_A 78 VTRFDTMRAVYNAKRFGN-ELALIAY-KHSIVDKHEIEAMLGVKIKEFL 124 (196)
T ss_dssp CCHHHHHHHHHHHGGGCS-EEEEEEE-SSCSSCHHHHHHHHTCEEEEEE
T ss_pred CCHhHHHHHHHHHHhhCC-cEEEEeC-cchhhHHHHHHHHhCCceEEEE
Confidence 788888887777666543 2222222 3334455677788888776554
No 147
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=54.86 E-value=5.6 Score=33.45 Aligned_cols=46 Identities=9% Similarity=0.077 Sum_probs=41.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG 48 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g 48 (251)
+|||.++..+++.|.+.|+..|+.+ .++.+++..+-...+++|...
T Consensus 46 ~LIinn~~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 46 CLIIDCIGNETELLRDTFTSLGYEV-QKFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp EEEEESSCCCCSHHHHHHHHHTEEE-EEEESCBHHHHHHHHHHHHTC
T ss_pred EEEECCchHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHHHhc
Confidence 7999999999999999999999987 467789999999999999764
No 148
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=54.55 E-value=44 Score=27.36 Aligned_cols=54 Identities=9% Similarity=-0.012 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCC---ceEEEecccccccc
Q psy18034 8 TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGK---IRVLVVTDVAARGI 63 (251)
Q Consensus 8 t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~---~~iLv~Td~~~~Gl 63 (251)
+...++.|.+.|+..|+.| .++.+++..+-.+.+++|.... .+++|+- .++-|.
T Consensus 39 ~~~D~~~l~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~-~lsHG~ 95 (250)
T 2j32_A 39 TDVDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKEDHSKRSSFVCV-LLSHGE 95 (250)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTSCCTTEEEEEEE-EESCEE
T ss_pred CHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHhhccCCCEEEEE-ECCCCC
Confidence 3458999999999999997 5677899999999999998753 3444332 445565
No 149
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=53.93 E-value=50 Score=27.42 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC---CceEEEeccccccccccccccEEEEecCCCChhhHHH
Q psy18034 9 KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG---KIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVH 85 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g---~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~q 85 (251)
..+++.|.+.|+..|+.| .++.+++..+-.+.+++|... ..+++|+- +++-|.. +.|+-.|-+-+.+..++
T Consensus 55 ~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~dh~~~d~~v~~-~lsHG~~----~~i~~~D~~v~l~~i~~ 128 (272)
T 1m72_A 55 NVDSDNLSKVLKTLGFKV-TVFPNLKSEEINKFIQQTAEMDHSDADCLLVA-VLTHGEL----GMLYAKDTHYKPDNLWY 128 (272)
T ss_dssp HHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTSCCTTEEEEEEE-EESCEET----TEEECSSSEECTTHHHH
T ss_pred HHHHHHHHHHHHHCCCEE-EEecCcCHHHHHHHHHHHHHhhcCCCCEEEEE-EcCCCCC----CEEEecCCcEEHHHHHH
Confidence 788999999999999997 567789999999999999764 22333332 3444531 34444444444555554
No 150
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=52.77 E-value=38 Score=25.94 Aligned_cols=39 Identities=5% Similarity=-0.182 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC
Q psy18034 9 KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG 48 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g 48 (251)
...++.|.+.|+..|+.| .++.+++..+-.+.+++|...
T Consensus 54 ~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 678899999999999997 577889999999999999754
No 151
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=52.77 E-value=9.1 Score=27.95 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=25.3
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
++|||.+-......+..|...|+. +..+.|++.
T Consensus 77 ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 77 LYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp EEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred EEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 678888877777778888888885 667778873
No 152
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=52.58 E-value=30 Score=26.67 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhc
Q psy18034 9 KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQT 47 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~ 47 (251)
...++.|.+.|+..|+.+ .++.+++..+-.+.+++|..
T Consensus 57 ~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 57 DVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp HHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 458999999999999987 57788999999999999977
No 153
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=52.14 E-value=17 Score=31.11 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=45.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccc-------cccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAA-------RGIDIPSL 68 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~-------~Gldi~~v 68 (251)
++||.++|+.-+.++++.++.. +..+...+|+..... ......+|+|+|.-.- ..+++..+
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 5899999999999998887764 567777777654321 1234568999995321 24566778
Q ss_pred cEEEE
Q psy18034 69 DAVIN 73 (251)
Q Consensus 69 ~~VI~ 73 (251)
++||-
T Consensus 170 ~~iVi 174 (412)
T 3fht_A 170 KVFVL 174 (412)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87774
No 154
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=52.07 E-value=19 Score=30.51 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=45.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc------ccccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA------ARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~------~~Gldi~~v~~ 70 (251)
++||.|+|+.-+.++++.++.. ++.+..++|+..... .....+|+|+|.-. ....++..+++
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 148 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKI 148 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCcccccCCE
Confidence 5899999999999999888764 566777777643211 23367899999532 23456777887
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 149 iIi 151 (395)
T 3pey_A 149 FVL 151 (395)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 155
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=50.66 E-value=15 Score=32.64 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=44.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-----CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccc-------cccccccc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-----GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAA-------RGIDIPSL 68 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~-------~Gldi~~v 68 (251)
++||.++|+.-+.++++.++.. ++.+....++..... -.....+|+|+|.-.- ..+++..+
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 236 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-------cccCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence 5899999999999987777653 466777776643211 1133558999996322 35677888
Q ss_pred cEEEE
Q psy18034 69 DAVIN 73 (251)
Q Consensus 69 ~~VI~ 73 (251)
.+||-
T Consensus 237 ~~iVi 241 (479)
T 3fmp_B 237 KVFVL 241 (479)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 156
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=49.93 E-value=39 Score=23.08 Aligned_cols=53 Identities=17% Similarity=0.028 Sum_probs=35.5
Q ss_pred CEEEEc------CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEE
Q psy18034 1 MTVVFT------ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVL 53 (251)
Q Consensus 1 k~iIF~------~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iL 53 (251)
+++||+ ++|..|..+...|...++....+.=..++..+....+.+....+..+
T Consensus 18 ~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 18 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp SEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 367777 57888999999999988887777655566655555555433344333
No 157
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=49.54 E-value=52 Score=22.82 Aligned_cols=53 Identities=13% Similarity=-0.068 Sum_probs=35.0
Q ss_pred CEEEEcC------cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEE
Q psy18034 1 MTVVFTA------TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVL 53 (251)
Q Consensus 1 k~iIF~~------t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iL 53 (251)
+++||.. +|..|....+.|...|+....+.=..++..+....+......+..+
T Consensus 19 ~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i 77 (109)
T 3ipz_A 19 KVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQL 77 (109)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred CEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 4789987 5999999999999999887666544455555544443323334333
No 158
>2gdl_A Myeloid antimicrobial peptide 27; cathelicidin, alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=49.51 E-value=1.4 Score=23.22 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=12.8
Q ss_pred HHHHHhcCCCCCCcee
Q psy18034 220 NLLTKMSEYRPPSTVL 235 (251)
Q Consensus 220 ~~l~~~~~~~~~~tv~ 235 (251)
.+|.+|..|||+-||-
T Consensus 9 rflrkirrfrpkvtit 24 (31)
T 2gdl_A 9 RFLRKIRRFRPKVTIT 24 (31)
T ss_dssp SSSSSCCCCTTCCHHH
T ss_pred HHHHHHHhcCCceEEE
Confidence 4677899999998863
No 159
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=48.88 E-value=52 Score=22.68 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=32.7
Q ss_pred CEEEEcC------cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHH
Q psy18034 1 MTVVFTA------TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKF 45 (251)
Q Consensus 1 k~iIF~~------t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F 45 (251)
+++||.. +|..|..+...|...|+....+.=..++..+....+..
T Consensus 16 ~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 16 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp SEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred CEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 4667765 67788888999999999887777666666565554444
No 160
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=48.49 E-value=40 Score=26.18 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhc
Q psy18034 8 TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQT 47 (251)
Q Consensus 8 t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~ 47 (251)
+...++.|.+.|+..|+.|. ++.+++..+-.+.+++|..
T Consensus 63 ~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 63 AEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 35789999999999999975 6778999999999999964
No 161
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=48.48 E-value=60 Score=27.05 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC---CceEEEeccccccccccccccEEEEecCCCChhhHH
Q psy18034 8 TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG---KIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFV 84 (251)
Q Consensus 8 t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g---~~~iLv~Td~~~~Gldi~~v~~VI~~d~P~~~~~y~ 84 (251)
+...++.|.+.|+..|+.| .++.+++..+-.+.+++|... ....+|+. +++.|.. +.|+-.|-+-+.+...
T Consensus 67 t~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~dh~~~d~~vv~-ilSHG~~----g~i~g~D~~v~l~~I~ 140 (277)
T 4ehd_A 67 TDVDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKEDHSKRSSFVCV-LLSHGEE----GIIFGTNGPVDLKKIT 140 (277)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTSCCTTEEEEEEE-EESCEET----TEEEETTEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhhcccCCCEEEEE-EEcCCCC----CEEEEeCCcEeHHHHH
Confidence 4558999999999999997 577889999999999999874 23333322 3455654 4555555555555555
Q ss_pred HHh
Q psy18034 85 HRV 87 (251)
Q Consensus 85 qr~ 87 (251)
+..
T Consensus 141 ~~f 143 (277)
T 4ehd_A 141 NFF 143 (277)
T ss_dssp HTT
T ss_pred HHh
Confidence 433
No 162
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=47.93 E-value=41 Score=25.59 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=39.5
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccccccccccccccEEEEecC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVINYNF 76 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~~VI~~d~ 76 (251)
+-|.|.+...+..+.+.|...|+++..+.++-. ...-.|.|+|--.+.|+-++.| |-+++
T Consensus 64 iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf~~V---~~~~~ 123 (174)
T 3dmn_A 64 TAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEFDAV---IVWNA 123 (174)
T ss_dssp EEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCEEEE---EEETC
T ss_pred EEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCCCEE---EEecC
Confidence 456677777777777777777777665554321 1123688999999999887544 54443
No 163
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=47.82 E-value=51 Score=24.18 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=35.9
Q ss_pred CEEEEcC------cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEE
Q psy18034 1 MTVVFTA------TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVL 53 (251)
Q Consensus 1 k~iIF~~------t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iL 53 (251)
+++||+. +|..|..+.+.|...|+....+.=..++..+....+......+..+
T Consensus 36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V 94 (135)
T 2wci_A 36 PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQL 94 (135)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEE
Confidence 4678876 7889999999999999887777655566655554444332334333
No 164
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=47.44 E-value=58 Score=22.77 Aligned_cols=43 Identities=16% Similarity=-0.004 Sum_probs=31.6
Q ss_pred CEEEEc------CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHH
Q psy18034 1 MTVVFT------ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAA 43 (251)
Q Consensus 1 k~iIF~------~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~ 43 (251)
+++||. ++|..|....+.|...|+....+.=..++..+....+
T Consensus 17 ~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 17 PCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred CEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 478888 5789999999999999988776654445555555433
No 165
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=45.67 E-value=11 Score=35.56 Aligned_cols=66 Identities=8% Similarity=0.036 Sum_probs=47.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHh---CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccccc-cccccEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGL---AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARGID-IPSLDAV 71 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~---~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~Gld-i~~v~~V 71 (251)
++++.++++.-+..+++.++. .|..+..++|+....++. .+..+|+|+|+ .+..+.. +..+++|
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~v 149 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW-------LKNYDIIITTYEKLDSLWRHRPEWLNEVNYF 149 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG-------GGGCSEEEECHHHHHHHHHHCCGGGGGEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh-------cCCCCEEEEcHHHHHHHHhCChhHhhccCEE
Confidence 478999999999999888743 388999999987654431 23678999996 2222333 5677777
Q ss_pred EE
Q psy18034 72 IN 73 (251)
Q Consensus 72 I~ 73 (251)
|-
T Consensus 150 Ii 151 (715)
T 2va8_A 150 VL 151 (715)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 166
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=45.60 E-value=59 Score=25.15 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC
Q psy18034 8 TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG 48 (251)
Q Consensus 8 t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g 48 (251)
|...++.|.+.|+..|+.+ .+|.+++..+-.+.+++|...
T Consensus 67 t~~D~~~L~~~F~~LgF~V-~v~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 67 TDKDAEALFKCFRSLGFDV-IVYNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp HHHHHHHHHHHHHHHTEEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 4578999999999999987 566789999999999999765
No 167
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=44.91 E-value=48 Score=27.64 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC
Q psy18034 9 KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG 48 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g 48 (251)
...++.|.+.|+..|+.|. ++.+++..+-.+.+++|...
T Consensus 45 ~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 45 CADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 4789999999999999975 67789999999999999764
No 168
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=44.88 E-value=69 Score=26.21 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=39.5
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHH-H----HHHHHHhcCCceEEEecc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTAR-K----INAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r-~----~~~~~F~~g~~~iLv~Td 57 (251)
+++.-.+.+.++.+.+.++..|..+..+..+++..+. . ++.++| |.+++||..-
T Consensus 34 Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~--G~iDiLVNNA 92 (254)
T 4fn4_A 34 VVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY--SRIDVLCNNA 92 (254)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH--SCCCEEEECC
T ss_pred EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc--CCCCEEEECC
Confidence 4555667788899999999998899999999865543 2 233334 7899999763
No 169
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=44.56 E-value=36 Score=32.26 Aligned_cols=62 Identities=16% Similarity=0.007 Sum_probs=45.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc--c-ccccccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV--A-ARGIDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~--~-~~Gldi~~v~~VI~ 73 (251)
+++|.++|+..+.++++.+... +..+...+|+.. ..+..+|+|+|+- + ...+++..+++||-
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred eEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 5899999999999998877544 777777788754 3667889999962 2 23456667777774
No 170
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=44.53 E-value=16 Score=29.93 Aligned_cols=50 Identities=10% Similarity=-0.108 Sum_probs=35.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCC----cEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGI----SSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~----~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
++||.|+|+..+++..+.++..+. .+..++|+.+... -..+..+|+|+|.
T Consensus 159 ~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 159 KILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred eEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 478999999999999888887643 5677777754322 1124677999985
No 171
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=44.13 E-value=14 Score=27.69 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=27.3
Q ss_pred CEEEEcCcH---------HHHHHHHHHHHhCCCcEEEEcCCC
Q psy18034 1 MTVVFTATK---------YHVEYVHKILGLAGISSTYIYSDL 33 (251)
Q Consensus 1 k~iIF~~t~---------~~~~~l~~~L~~~~~~~~~i~g~~ 33 (251)
.+||||.+- ..+..++..|...|+.+..+.|++
T Consensus 95 ~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 95 EIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp CEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred eEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 378999876 357788899999999999999985
No 172
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=43.66 E-value=55 Score=25.52 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC
Q psy18034 9 KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG 48 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g 48 (251)
...++.|.+.|+..|+.+. +|-+++..+-...+++|...
T Consensus 68 ~~D~~~L~~~F~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 68 CADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHhhh
Confidence 3689999999999999975 66789999999999999764
No 173
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=43.07 E-value=42 Score=28.62 Aligned_cols=75 Identities=5% Similarity=0.058 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCC----ceEEEeccccccccccccccEEEEecCC-CChhhH
Q psy18034 9 KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGK----IRVLVVTDVAARGIDIPSLDAVINYNFP-CKAKLF 83 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~----~~iLv~Td~~~~Gldi~~v~~VI~~d~P-~~~~~y 83 (251)
..+++.|.+.|+..|+.| .++.+++..+-.+.+++|.... .+.+|+- +++-|....+-+.|+-.|-. -+.+..
T Consensus 83 ~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv~-ilSHG~~~~g~g~i~g~D~~~v~l~~I 160 (316)
T 2fp3_A 83 EKDSKSLIHLFQELNFTI-FPYGNVNQDQFFKLLTMVTSSSYVQNTECFVMV-LMTHGNSVEGKEKVEFRDGSVVDMQKI 160 (316)
T ss_dssp HHHHHHHHHHHHHTTEEE-EEECSCCHHHHHHHHHHHHTSHHHHTCSCEEEE-EESCEECCTTCCEEECTTSCEEEHHHH
T ss_pred HHHHHHHHHHHHHCCCEE-EEccCCCHHHHHHHHHHHHHHhhcCCCCEEEEE-EccCCCccCCCCEEEeecCcEEeHHHH
Confidence 378999999999999987 5778999999999999997532 2222221 35566554444455555543 344444
Q ss_pred HH
Q psy18034 84 VH 85 (251)
Q Consensus 84 ~q 85 (251)
++
T Consensus 161 ~~ 162 (316)
T 2fp3_A 161 KD 162 (316)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 174
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=42.95 E-value=56 Score=27.78 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC
Q psy18034 9 KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG 48 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g 48 (251)
...++.|.+.|+..|+.| .++.+++..+-.+.+++|...
T Consensus 83 ~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 83 NVDSDNLSKVLKTLGFKV-TVFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp HHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 788999999999999997 567789999999999999865
No 175
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=42.03 E-value=49 Score=27.23 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC---CceEEEeccccccccc
Q psy18034 9 KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG---KIRVLVVTDVAARGID 64 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g---~~~iLv~Td~~~~Gld 64 (251)
...++.|.+.|+..|+.| .++.+++..+-.+.+++|... ..+.+|+. +++.|..
T Consensus 43 ~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~~h~~~d~~v~~-~lsHG~~ 99 (259)
T 3sir_A 43 NVDCENLTRVLKQLDFEV-TVYKDCRYKDILRTIEYSASQNHSDSDCILVA-ILSHGEM 99 (259)
T ss_dssp CCHHHHHHHHHHHTTCEE-EEEEECSHHHHHHHHHHHHTSCCTTEEEEEEE-EEECTTC
T ss_pred HHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHhhccCCCEEEEE-EecCCCC
Confidence 367999999999999997 567789999999999999864 23444332 4566654
No 176
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=41.94 E-value=21 Score=35.62 Aligned_cols=62 Identities=16% Similarity=0.017 Sum_probs=45.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccc-cccccccEEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD-----VAARG-IDIPSLDAVIN 73 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td-----~~~~G-ldi~~v~~VI~ 73 (251)
++|+.++++.-+.+.++.|......+..++|+.+. +...+|+|+|. .+.+| ..+..+++||-
T Consensus 131 rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~-----------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVVi 198 (1010)
T 2xgj_A 131 RVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIF 198 (1010)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEE-----------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEE
T ss_pred eEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCcc-----------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEE
Confidence 47899999999999999888764488889998753 23568999996 23333 45667777774
No 177
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=41.25 E-value=82 Score=21.83 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=28.1
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEe
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVV 55 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~ 55 (251)
++|.-......+.+...|...|+.+...... .+.++.+.....+++++
T Consensus 9 iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~------~~a~~~l~~~~~dlvi~ 56 (140)
T 3grc_A 9 ILICEDDPDIARLLNLMLEKGGFDSDMVHSA------AQALEQVARRPYAAMTV 56 (140)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEECSH------HHHHHHHHHSCCSEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCeEEEECCH------HHHHHHHHhCCCCEEEE
Confidence 4555666677778888888877775444322 22334444455565554
No 178
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=40.32 E-value=97 Score=21.97 Aligned_cols=43 Identities=26% Similarity=0.147 Sum_probs=31.3
Q ss_pred CEEEEcC------cHHHHHHHHHHHHhCCCc-EEEEcCCCCHHHHHHHHH
Q psy18034 1 MTVVFTA------TKYHVEYVHKILGLAGIS-STYIYSDLDPTARKINAA 43 (251)
Q Consensus 1 k~iIF~~------t~~~~~~l~~~L~~~~~~-~~~i~g~~~~~~r~~~~~ 43 (251)
+++||.. +|..|..+.+.|...|+. ...+.=..+++.+....+
T Consensus 21 ~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~ 70 (118)
T 2wem_A 21 KVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70 (118)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHH
T ss_pred CEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHH
Confidence 4789988 599999999999999985 666654555555554433
No 179
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=39.35 E-value=54 Score=27.19 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCC---ceEEEeccccccccc
Q psy18034 9 KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGK---IRVLVVTDVAARGID 64 (251)
Q Consensus 9 ~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~---~~iLv~Td~~~~Gld 64 (251)
...++.|.+.|+..|+.| .++.+++..+-.+.+++|.... .+.+|+- +++-|..
T Consensus 45 ~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~~h~~~D~~vv~-ilSHG~~ 101 (277)
T 1nw9_B 45 NIDCEKLRRRFSSLHFMV-EVKGDLTAKKMVLALLELARQDHGALDCCVVV-ILSHGCQ 101 (277)
T ss_dssp HHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHHSCCTTCSEEEEE-EEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEE-EEEcCCCHHHHHHHHHHHHHhhcccCCeEEEE-EeCCCCc
Confidence 358999999999999987 5678899999999999997642 2333332 3455654
No 180
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=38.96 E-value=1e+02 Score=21.98 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceE
Q psy18034 8 TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRV 52 (251)
Q Consensus 8 t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~i 52 (251)
.+.-...+-+.-+..|..+..++..-+...|.+..+.|+.....+
T Consensus 88 dkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdv 132 (162)
T 2l82_A 88 DKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDV 132 (162)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEE
T ss_pred cHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCcee
Confidence 344444445555677999999999999999999999998775544
No 181
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=38.77 E-value=75 Score=20.84 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=22.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIY 30 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~ 30 (251)
+++|.-......+.+...|...|+.+....
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~ 32 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLV 32 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEec
Confidence 356777777888888999988888765433
No 182
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=38.74 E-value=19 Score=29.93 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=29.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCC-cEEEEcCCCCH
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGI-SSTYIYSDLDP 35 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~-~~~~i~g~~~~ 35 (251)
++++||.+-..+...+..|...|+ .+..+.||+..
T Consensus 183 ~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 183 KIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp CEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred eEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 478999999999999999999998 58888898653
No 183
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=38.16 E-value=13 Score=35.23 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=47.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHh---CCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----cccccc-cccccEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGL---AGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AARGID-IPSLDAV 71 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~---~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~Gld-i~~v~~V 71 (251)
++++.++++.-+.++++.++. .|+.+..++|+.+...+. .+..+|+|+|+- +.++.. +..+++|
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~v 142 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDVKIL 142 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCTTGGGEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChhhhhcCCEE
Confidence 478899999999999988853 388999999987654431 246789999972 222322 5677777
Q ss_pred EE
Q psy18034 72 IN 73 (251)
Q Consensus 72 I~ 73 (251)
|-
T Consensus 143 Ii 144 (720)
T 2zj8_A 143 VA 144 (720)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 184
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=38.09 E-value=55 Score=23.73 Aligned_cols=40 Identities=20% Similarity=0.015 Sum_probs=33.8
Q ss_pred cCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHH
Q psy18034 6 TATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKF 45 (251)
Q Consensus 6 ~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F 45 (251)
|.++..+..+..+|...|+....+.=++++..|.+..+..
T Consensus 13 c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 13 TAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 3445778899999999999988888888999999988886
No 185
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=37.28 E-value=28 Score=34.64 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=44.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEeccc-----cccc-cccccccEEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA--GISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV-----AARG-IDIPSLDAVI 72 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~-----~~~G-ldi~~v~~VI 72 (251)
++||.++++.-+...++.|+.. +..+..++|+.+ .++..+|+|+|+- +.++ ..+..+.+||
T Consensus 84 ~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvV 152 (997)
T 4a4z_A 84 KTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEILRSMLYRGADLIRDVEFVI 152 (997)
T ss_dssp EEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEE
Confidence 4799999999999999999886 678999999875 2456789999852 1122 2345666666
No 186
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=37.27 E-value=76 Score=19.88 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=35.4
Q ss_pred CEEEEc-CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q psy18034 1 MTVVFT-ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLV 54 (251)
Q Consensus 1 k~iIF~-~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv 54 (251)
++++|. +++..|..+...|...|+....+.-+..+..+.+..+.+..+.+.+++
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~ 56 (82)
T 1fov_A 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF 56 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 355665 468889999999988888776666554444455555555555666554
No 187
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=35.61 E-value=78 Score=26.78 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcC
Q psy18034 8 TKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTG 48 (251)
Q Consensus 8 t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g 48 (251)
+...++.|.+.|+..|+.| .++-+++..+-...+++|...
T Consensus 92 ~~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 92 TDKDAEALFKCFRSLGFDV-IVYNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp HHHHHHHHHHHHHHHTEEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCEE-EEecCcCHHHHHHHHHHHHHh
Confidence 4578999999999999987 567789999999999999765
No 188
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=33.04 E-value=1.3e+02 Score=21.27 Aligned_cols=43 Identities=19% Similarity=0.089 Sum_probs=30.1
Q ss_pred CEEEEcC------cHHHHHHHHHHHHhCCCc---EEEEcCCCCHHHHHHHHH
Q psy18034 1 MTVVFTA------TKYHVEYVHKILGLAGIS---STYIYSDLDPTARKINAA 43 (251)
Q Consensus 1 k~iIF~~------t~~~~~~l~~~L~~~~~~---~~~i~g~~~~~~r~~~~~ 43 (251)
+++||.. +|-.|..+.+.|...|+. ...+.=..++..+....+
T Consensus 17 ~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~ 68 (121)
T 3gx8_A 17 PVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68 (121)
T ss_dssp SEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHH
T ss_pred CEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHH
Confidence 4788887 488899999999999877 545544445555554433
No 189
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=32.79 E-value=1e+02 Score=19.96 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=35.2
Q ss_pred EEEEc-CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEE
Q psy18034 2 TVVFT-ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVL 53 (251)
Q Consensus 2 ~iIF~-~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iL 53 (251)
+++|. +++..|..+...|...++....+.=..++..+.+..+.+....+..+
T Consensus 8 v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l 60 (92)
T 2khp_A 8 VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQI 60 (92)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEE
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 45665 56889999999999998887777655555555555555544455444
No 190
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=32.07 E-value=62 Score=27.85 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=36.8
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEE-EcCCCCHHHHHHHHHHHhcCCceE
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTY-IYSDLDPTARKINAAKFQTGKIRV 52 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~-i~g~~~~~~r~~~~~~F~~g~~~i 52 (251)
+|||++-....+.+.+.+...|++... +..+.+.....++.+.-+....++
T Consensus 83 aVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rl 134 (334)
T 3mwd_B 83 LINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTI 134 (334)
T ss_dssp EEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEE
T ss_pred EEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 478888887778888888878887555 488999876666666555554443
No 191
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=30.91 E-value=47 Score=23.14 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=28.4
Q ss_pred EEEEcCcHHHHHHHHHHHHh-CCCc-EEEEcCCCCHHHHHHHHHHHhcCCceEEEe
Q psy18034 2 TVVFTATKYHVEYVHKILGL-AGIS-STYIYSDLDPTARKINAAKFQTGKIRVLVV 55 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~-~~~~-~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~ 55 (251)
++|.-......+.+...|.. .|+. +...... .+.++.++....+++++
T Consensus 11 iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~------~~a~~~l~~~~~dlii~ 60 (143)
T 3cnb_A 11 ILIIEDDKEFADMLTQFLENLFPYAKIKIAYNP------FDAGDLLHTVKPDVVML 60 (143)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCTTCEEEEECSH------HHHHHHHHHTCCSEEEE
T ss_pred EEEEECCHHHHHHHHHHHHhccCccEEEEECCH------HHHHHHHHhcCCCEEEE
Confidence 56666777777888888888 7877 4433322 12233444455565554
No 192
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=30.24 E-value=21 Score=25.65 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=25.0
Q ss_pred CEEEEcCcHHH---------HHHHHHHHHhCCCcEEEEcCCCC
Q psy18034 1 MTVVFTATKYH---------VEYVHKILGLAGISSTYIYSDLD 34 (251)
Q Consensus 1 k~iIF~~t~~~---------~~~l~~~L~~~~~~~~~i~g~~~ 34 (251)
.+||||.+-.. +..+...|...|+.+..+.|++.
T Consensus 85 ~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 85 EIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp CEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 36888877543 35677788888888888888853
No 193
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=29.79 E-value=1.1e+02 Score=19.41 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=24.4
Q ss_pred CEEEEc-CcHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy18034 1 MTVVFT-ATKYHVEYVHKILGLAGISSTYIYSDL 33 (251)
Q Consensus 1 k~iIF~-~t~~~~~~l~~~L~~~~~~~~~i~g~~ 33 (251)
++.+|. +++..|..+...|...|+....+.=+.
T Consensus 5 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~~vd~ 38 (89)
T 3msz_A 5 KVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDD 38 (89)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCS
T ss_pred EEEEEEcCCChhHHHHHHHHHHcCCCceEEEeec
Confidence 356776 678899999999999987766554444
No 194
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=27.77 E-value=1e+02 Score=20.31 Aligned_cols=33 Identities=18% Similarity=0.047 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHH
Q psy18034 13 EYVHKILGLAGISSTYIYSDLDPTARKINAAKF 45 (251)
Q Consensus 13 ~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F 45 (251)
....+.|...|+....+.=..++..+....+..
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~ 54 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQDNALRDEMRTLA 54 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh
Confidence 788888999998877777666777666655554
No 195
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=27.64 E-value=22 Score=25.05 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=24.1
Q ss_pred EEEEcCcHHHHHHHHHHHHhC------CC-cEEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLA------GI-SSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~------~~-~~~~i~g~~~ 34 (251)
+++||.+-......+..|... |+ .+..+.|++.
T Consensus 75 ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 75 IYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 678888877777777888777 33 5677778764
No 196
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.73 E-value=58 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.369 Sum_probs=16.8
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTY 28 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~ 28 (251)
++|.-......+.+...|...|+.+..
T Consensus 6 ilivdd~~~~~~~l~~~L~~~g~~v~~ 32 (127)
T 3i42_A 6 ALIVEDYQAAAETFKELLEMLGFQADY 32 (127)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEE
Confidence 455555566667777777777665443
No 197
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=25.98 E-value=2.5e+02 Score=22.67 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=41.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC--CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccccccccccccc-EEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG--ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLD-AVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~--~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~-~VI~~d~P 77 (251)
++.|+++|...++...+.|.+.+ -++.++ ..+.++.++-.....+ .|.+. +.|+++.|
T Consensus 28 ~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~---~~~~~~~~i~~~l~~~----------------~P~l~~~~i~l~~P 88 (227)
T 3gr1_A 28 MLYVAAQNERDTLWARQVLARGDYDKNARVI---NENEENKRISIWLDTY----------------YPQLAYYRIHFDEP 88 (227)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCTTTEEEE---CHHHHHHHHHHHHHHH----------------CTTCCEEEEECSST
T ss_pred cEEEEEccccHHHHHHHHHHhcCCcCCeEEE---ehHHHHHHHHHHHHhc----------------CCceEEEEEEcCCC
Confidence 46799999999999999998875 455555 4455555554444333 35555 55666666
Q ss_pred CChhh
Q psy18034 78 CKAKL 82 (251)
Q Consensus 78 ~~~~~ 82 (251)
..|..
T Consensus 89 ~~Pvl 93 (227)
T 3gr1_A 89 RKPVF 93 (227)
T ss_dssp TSCEE
T ss_pred CCCEE
Confidence 65544
No 198
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=25.39 E-value=71 Score=22.90 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=20.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCc
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGIS 25 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~ 25 (251)
+++||.+-..+...+..|...|+.
T Consensus 94 ivvyC~~G~rs~~aa~~L~~~G~~ 117 (139)
T 3d1p_A 94 LIFYCASGKRGGEAQKVASSHGYS 117 (139)
T ss_dssp EEEECSSSHHHHHHHHHHHTTTCC
T ss_pred EEEECCCCchHHHHHHHHHHcCCC
Confidence 688999888888888999988885
No 199
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=24.68 E-value=54 Score=28.80 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=28.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCC-cEEEEcCCCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGI-SSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~-~~~~i~g~~~ 34 (251)
+|+||.+...+...+..|+..|+ .+..+.|++.
T Consensus 206 ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 206 VILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred EEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 78999999889999999999998 5888888864
No 200
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=24.00 E-value=64 Score=28.99 Aligned_cols=65 Identities=9% Similarity=0.206 Sum_probs=39.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC----CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccc------ccccccccccE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG----ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA------ARGIDIPSLDA 70 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~----~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~------~~Gldi~~v~~ 70 (251)
++||.++++.-+.++++.++..+ ..+....++..... .....+|+|+|.-. ...+++..+++
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~l 262 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG--------AKIDAQIVIGTPGTVMDLMKRRQLDARDIKV 262 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc--------ccCCCCEEEECHHHHHHHHHcCCccccCCCE
Confidence 58999999999999999888763 33333333322111 13367899999532 12456777887
Q ss_pred EEE
Q psy18034 71 VIN 73 (251)
Q Consensus 71 VI~ 73 (251)
||-
T Consensus 263 IIi 265 (508)
T 3fho_A 263 FVL 265 (508)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 201
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=23.90 E-value=1.8e+02 Score=21.85 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCcEEEEc--CCCCHHHHHHHHHH-HhcCCceEEEeccccccccc
Q psy18034 12 VEYVHKILGLAGISSTYIY--SDLDPTARKINAAK-FQTGKIRVLVVTDVAARGID 64 (251)
Q Consensus 12 ~~~l~~~L~~~~~~~~~i~--g~~~~~~r~~~~~~-F~~g~~~iLv~Td~~~~Gld 64 (251)
..+|++.|.+.|+.+.... ++ +.+.-.+.+.. ...+..+++|+|--.+-|-|
T Consensus 42 g~~L~~~L~~~G~~v~~~~iV~D-d~~~i~~al~~~~a~~~~DlVittGG~g~~~~ 96 (178)
T 3iwt_A 42 GDIIKQLLIENGHKIIGYSLVPD-DKIKILKAFTDALSIDEVDVIISTGGTGYSPT 96 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECS-CHHHHHHHHHHHHTCTTCCEEEEESCCSSSTT
T ss_pred HHHHHHHHHHCCCEEEEEEEeCC-CHHHHHHHHHHHHhcCCCCEEEecCCcccCCC
Confidence 4578999999998875433 33 23333333443 34567899999976665543
No 202
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=23.51 E-value=31 Score=28.25 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=26.0
Q ss_pred EEEEcCcHHH-HHHHHHHHHhCCC-cEEEEcCCCC
Q psy18034 2 TVVFTATKYH-VEYVHKILGLAGI-SSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~~-~~~l~~~L~~~~~-~~~~i~g~~~ 34 (251)
+||||.+-.. +..++..|+..|+ .+..+.|++.
T Consensus 89 ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 89 LIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp EEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 6889987554 7788888999998 5888888853
No 203
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=23.45 E-value=2.5e+02 Score=22.10 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=42.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCC--CcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecccccccccccccc-EEEEecCC
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAG--ISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLD-AVINYNFP 77 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~--~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td~~~~Gldi~~v~-~VI~~d~P 77 (251)
++.|++++...+++..+.|.+.+ -++..+- .+.++.++-..... ..|.+. +-|+++.|
T Consensus 28 ~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~---~~~e~~~i~~~L~~----------------~~P~l~~~~i~l~~P 88 (197)
T 3gr0_A 28 MLYVAAQNERDTLWARQVLARGDYDKNARVIN---ENEENKRISIWLDT----------------YYPQLAYYRIHFDEP 88 (197)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTCTTTEEEEC---HHHHHHHHHHHHHH----------------HSTTCCEEEEECSST
T ss_pred cEEEEEccccHHHHHHHHHHhcCCCCCcEEee---hHHHHHHHHHHHHh----------------cCCceeEEEEecCCC
Confidence 46799999999999999887775 4455444 34444444444322 346676 66888888
Q ss_pred CChhh
Q psy18034 78 CKAKL 82 (251)
Q Consensus 78 ~~~~~ 82 (251)
.+|..
T Consensus 89 ~~P~l 93 (197)
T 3gr0_A 89 RKPVF 93 (197)
T ss_dssp TSCEE
T ss_pred CCCEE
Confidence 77765
No 204
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=23.42 E-value=62 Score=26.32 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=25.3
Q ss_pred EEEEcCcH-HHHHHHHHHHHhCCC-cEEEEcCCCC
Q psy18034 2 TVVFTATK-YHVEYVHKILGLAGI-SSTYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~-~~~~~l~~~L~~~~~-~~~~i~g~~~ 34 (251)
+||||.+- ..+..++..|+..|+ .+..+.|++.
T Consensus 80 vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 80 VILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp EEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred EEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 67888874 356778888988898 5778888853
No 205
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=23.16 E-value=1.7e+02 Score=20.08 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=12.9
Q ss_pred EEEcCcHHHHHHHHHHHHhCCCcE
Q psy18034 3 VVFTATKYHVEYVHKILGLAGISS 26 (251)
Q Consensus 3 iIF~~t~~~~~~l~~~L~~~~~~~ 26 (251)
+|.-......+.+...|...|+.+
T Consensus 19 livdd~~~~~~~l~~~L~~~g~~v 42 (138)
T 2b4a_A 19 TLVEDEPSHATLIQYHLNQLGAEV 42 (138)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEE
T ss_pred EEECCCHHHHHHHHHHHHHcCCEE
Confidence 444444555556666666555544
No 206
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=22.88 E-value=1.6e+02 Score=18.89 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=32.7
Q ss_pred EEEEc-CcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHH-hcCCceEEE
Q psy18034 2 TVVFT-ATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKF-QTGKIRVLV 54 (251)
Q Consensus 2 ~iIF~-~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F-~~g~~~iLv 54 (251)
+++|. +++..|..+...|...++....+.=+ ...+.+..+.+ ....+..++
T Consensus 8 v~~y~~~~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~~~~~~vP~l~ 60 (89)
T 2klx_A 8 IILYTRPNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANGRNTFPQIF 60 (89)
T ss_dssp EEEESCSCCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHHHSSCCSCEEE
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHhCCCCCcCEEE
Confidence 45665 45677788888888888877766554 44555555555 444555544
No 207
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=22.83 E-value=3.2e+02 Score=25.48 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=44.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC-CC-cEEEEc--------------------CCCC-----HHHHHHHHHHHhcCCceEE
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA-GI-SSTYIY--------------------SDLD-----PTARKINAAKFQTGKIRVL 53 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~-~~-~~~~i~--------------------g~~~-----~~~r~~~~~~F~~g~~~iL 53 (251)
.+||.+++...+.+++..|+.. +- .+..+- ...+ ...|..++.....++-.|+
T Consensus 55 ~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~~R~~~l~~L~~~~~~iv 134 (664)
T 1c4o_A 55 PALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIV 134 (664)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHCSCEEE
T ss_pred CEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHHHHHHHHHHHHhCCCeEE
Confidence 3789999999999999999887 22 233222 2332 4578888888877776688
Q ss_pred Eeccccccccc
Q psy18034 54 VVTDVAARGID 64 (251)
Q Consensus 54 v~Td~~~~Gld 64 (251)
|+|-.+..|+-
T Consensus 135 V~s~~~l~~~~ 145 (664)
T 1c4o_A 135 VASVSAIYGLG 145 (664)
T ss_dssp EEEGGGCSCCC
T ss_pred EecHHHHhcCC
Confidence 87754445543
No 208
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=22.46 E-value=1.9e+02 Score=19.75 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=18.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEE
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTY 28 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~ 28 (251)
++|.-......+.+...|...|+.+..
T Consensus 10 iLivdd~~~~~~~l~~~L~~~g~~v~~ 36 (142)
T 3cg4_A 10 VMIVDDDAHVRIAVKTILSDAGFHIIS 36 (142)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCCeEEEE
Confidence 456666677777788888777766543
No 209
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=22.46 E-value=1.6e+02 Score=18.89 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=32.1
Q ss_pred CEEEEc-C----cHHHHHHHHHHHHhCCCcEEEEcCC-----CCHHHHHHHHHHHhcC
Q psy18034 1 MTVVFT-A----TKYHVEYVHKILGLAGISSTYIYSD-----LDPTARKINAAKFQTG 48 (251)
Q Consensus 1 k~iIF~-~----t~~~~~~l~~~L~~~~~~~~~i~g~-----~~~~~r~~~~~~F~~g 48 (251)
+++||. + ++..|....+.|...|+....+.=. .++..+.+..+.....
T Consensus 1 ~v~iY~~~~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~ 58 (87)
T 1aba_A 1 MFKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRD 58 (87)
T ss_dssp CEEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCS
T ss_pred CEEEEEeCCCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCC
Confidence 345665 3 5778889999999999887766544 4566666655555443
No 210
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=22.14 E-value=71 Score=25.20 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=20.9
Q ss_pred EEEEcCcHH-HHHHHHHHHHhCCCc-EEEEcCC
Q psy18034 2 TVVFTATKY-HVEYVHKILGLAGIS-STYIYSD 32 (251)
Q Consensus 2 ~iIF~~t~~-~~~~l~~~L~~~~~~-~~~i~g~ 32 (251)
++|||.+-. .+..++..|+ .|+. +..+.|+
T Consensus 64 ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 64 VVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp EEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred EEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 577777655 6667777777 7774 6667776
No 211
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=21.95 E-value=47 Score=27.18 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=26.1
Q ss_pred EEEEcCcHH-HHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 2 TVVFTATKY-HVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~-~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
+||||.+-. .+...+..|+..|+. +..+.|++.
T Consensus 82 ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 82 VVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp EEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred EEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 688898865 577888889999985 778888853
No 212
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=21.45 E-value=48 Score=26.92 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=25.7
Q ss_pred EEEEcCcHH-HHHHHHHHHHhCCCc-EEEEcCCCC
Q psy18034 2 TVVFTATKY-HVEYVHKILGLAGIS-STYIYSDLD 34 (251)
Q Consensus 2 ~iIF~~t~~-~~~~l~~~L~~~~~~-~~~i~g~~~ 34 (251)
++|||.+-. .+..++..|+..|+. +..+.|++.
T Consensus 84 vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 84 YVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred EEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 678888754 677888889999985 778888853
No 213
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.29 E-value=1.9e+02 Score=19.75 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=30.5
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEe
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVV 55 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~ 55 (251)
++|.-......+.+...|...|+.+...... .+.++.++....+++++
T Consensus 9 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~------~~a~~~l~~~~~dlvi~ 56 (136)
T 3kto_A 9 IYLVDHQKDARAALSKLLSPLDVTIQCFASA------ESFMRQQISDDAIGMII 56 (136)
T ss_dssp EEEECSCHHHHHHHHHHHTTSSSEEEEESSH------HHHTTSCCCTTEEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCCcEEEEeCCH------HHHHHHHhccCCCEEEE
Confidence 5666677778888999998888876644321 22344445556666555
No 214
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=21.14 E-value=68 Score=27.01 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=26.2
Q ss_pred EEEEcCcHH-HHHHHHHHHHhCCCc-EEEEcCCC
Q psy18034 2 TVVFTATKY-HVEYVHKILGLAGIS-STYIYSDL 33 (251)
Q Consensus 2 ~iIF~~t~~-~~~~l~~~L~~~~~~-~~~i~g~~ 33 (251)
+||||.+-. .+...+..|+..|+. +..+.|++
T Consensus 114 vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 114 VVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp EEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred EEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 688998765 678888999999985 88888885
No 215
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.80 E-value=2.2e+02 Score=19.72 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=42.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHhcCCceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~F~~g~~~iLv~Td 57 (251)
|++|..+.+.....+.+.+...|+.+..+-.+.+..+-++--.+..+....+--.||
T Consensus 53 kiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 578889999999999999999999999988888877655544444444555555554
No 216
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=20.55 E-value=64 Score=29.39 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=28.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhCCCcEEEEcC-CCC
Q psy18034 2 TVVFTATKYHVEYVHKILGLAGISSTYIYS-DLD 34 (251)
Q Consensus 2 ~iIF~~t~~~~~~l~~~L~~~~~~~~~i~g-~~~ 34 (251)
++++|.+-......+..|+..|+.+..+.| ++.
T Consensus 325 ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 325 LVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp EEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred EEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChH
Confidence 688999887788888889999998888999 864
No 217
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=20.09 E-value=57 Score=24.11 Aligned_cols=21 Identities=5% Similarity=-0.075 Sum_probs=12.9
Q ss_pred HHHHHHHhCCC---cEEEEcCCCC
Q psy18034 14 YVHKILGLAGI---SSTYIYSDLD 34 (251)
Q Consensus 14 ~l~~~L~~~~~---~~~~i~g~~~ 34 (251)
.+...|...|+ .+..+.||+.
T Consensus 88 ~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 88 RFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHHHTCCCSEEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCEEEEcCcHH
Confidence 34466666675 4666777754
No 218
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=20.06 E-value=2.4e+02 Score=26.11 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=35.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHhC---CCcEEEEcCCCCHHHHHHHHHHHhcC-----CceEEEecc
Q psy18034 1 MTVVFTATKYHVEYVHKILGLA---GISSTYIYSDLDPTARKINAAKFQTG-----KIRVLVVTD 57 (251)
Q Consensus 1 k~iIF~~t~~~~~~l~~~L~~~---~~~~~~i~g~~~~~~r~~~~~~F~~g-----~~~iLv~Td 57 (251)
++||.|++ ..+....+.+... .+.+..++|+. ..++...+..|... ...|+|+|-
T Consensus 116 ~~LiV~P~-sll~qW~~E~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~vvi~ty 178 (644)
T 1z3i_X 116 KVIVVSPS-SLVRNWYNEVGKWLGGRVQPVAIDGGS-KDEIDSKLVNFISQQGMRIPTPILIISY 178 (644)
T ss_dssp CEEEEECH-HHHHHHHHHHHHHHGGGCCEEEECSSC-HHHHHHHHHHHHCCCSSCCSCCEEEEEH
T ss_pred cEEEEecH-HHHHHHHHHHHHHcCCCeeEEEEeCCC-HHHHHHHHHHHHHhcCCCCCCcEEEeeH
Confidence 36888886 5666666666554 35677777764 44555556666543 467888884
Done!