RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18034
(251 letters)
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity
A; hydrolase inhibitor-hydrolase complex, DEAD box RNA
helicase; 2.90A {Escherichia coli}
Length = 170
Score = 129 bits (328), Expect = 5e-38
Identities = 41/106 (38%), Positives = 61/106 (57%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
++VF + V + L AGI++ Y+ ++ R + G++ VLV TDVAAR
Sbjct: 33 SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
GIDIP + V N++ P ++HR+GR ARAGR G A SLV + +
Sbjct: 93 GIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 138
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 116 bits (294), Expect = 6e-33
Identities = 42/107 (39%), Positives = 58/107 (54%)
Query: 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAA 60
++F TK HV + L G I+ + R +F+ G+ R LV TDVAA
Sbjct: 37 SCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAA 96
Query: 61 RGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
RGIDI ++ VINY+ P + + +VHR GR RAG G A S V++ E
Sbjct: 97 RGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFE 143
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 116 bits (294), Expect = 6e-31
Identities = 35/106 (33%), Positives = 63/106 (59%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
++F + VE + K + G S Y ++ + R +F+ GK+R LV +D+ R
Sbjct: 261 AIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTR 320
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
GIDI +++ VIN++FP A+ ++HR+GR R G G+A +L++ ++
Sbjct: 321 GIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND 366
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase;
RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo
sapiens} SCOP: c.37.1.19
Length = 172
Score = 111 bits (280), Expect = 9e-31
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
V+F + + ++L + I+ + R +F+ + R+LV T++ R
Sbjct: 34 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYL 112
G+DI ++ NY+ P + ++HRV R R G G+A + VS + L
Sbjct: 94 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 144
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 117 bits (295), Expect = 2e-30
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 2 TVVFTATKYHVEYVHKIL---GLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58
++F T ++ IL + + + R +F+ + +LV TDV
Sbjct: 342 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 401
Query: 59 AARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDL 114
ARG+D P++ V+ P + ++HR+GR AR+G+ G + + DEL + +L
Sbjct: 402 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 457
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 109 bits (275), Expect = 4e-30
Identities = 39/107 (36%), Positives = 63/107 (58%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
V+F T+ VE + L + + IYSDL R +F++G R+L+ TD+ AR
Sbjct: 33 AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 92
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDEL 108
GID+ + VINY+ P + ++HR+GR R GR GVA + V+++++
Sbjct: 93 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 114 bits (289), Expect = 4e-30
Identities = 39/106 (36%), Positives = 62/106 (58%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
V+F T+ VE + L + + IYSDL R +F++G R+L+ TD+ AR
Sbjct: 262 AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 321
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
GID+ + VINY+ P + ++HR+GR R GR GVA + V++++
Sbjct: 322 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 367
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 114 bits (289), Expect = 4e-30
Identities = 35/106 (33%), Positives = 65/106 (61%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
V+F T+ V+++ + + + + ++ D+D R + +F++G RVL+ TD+ AR
Sbjct: 283 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 342
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
GID+ + VINY+ P + ++HR+GR R GR GVA ++V+ ++
Sbjct: 343 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 388
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 114 bits (288), Expect = 6e-30
Identities = 38/106 (35%), Positives = 66/106 (62%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
V+F TK V+++ + + A + + ++ D+ R+ +F++G RVL+ TDV AR
Sbjct: 279 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 338
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
G+D+P + +INY+ P +L++HR+GR R GR GVA + V +D+
Sbjct: 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD 384
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural consortium, SGC, alternative
initiation, ATP-binding, devel protein; 2.80A {Homo
sapiens}
Length = 175
Score = 108 bits (271), Expect = 2e-29
Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
++F T+ + +++ + G + + +L R +F+ GK +VL+ T+V AR
Sbjct: 37 AIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCAR 96
Query: 62 GIDIPSLDAVINYNFPCKAKLF------VHRVGRCARAGRSGVAYSLVSSDEL 108
GID+ + V+N++ P K +HR+GR R G+ G+A++++ DEL
Sbjct: 97 GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 149
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 108 bits (271), Expect = 2e-29
Identities = 42/117 (35%), Positives = 63/117 (53%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
T+VF TK + + L G + T I+ D R+ +F++GK +LV T VAAR
Sbjct: 49 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFL 118
G+DI ++ VIN++ P + +VHR+GR R G G+A S + + DLL L
Sbjct: 109 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 165
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 114 bits (287), Expect = 2e-29
Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 13/163 (7%)
Query: 2 TVVFTATKYHVEYVHKIL---GLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV 58
++F T ++ IL + + + R +F+ + +LV TDV
Sbjct: 291 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 350
Query: 59 AARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFL 118
ARG+D P++ V+ P + ++HR+GR AR+G+ G + + DEL ++ L
Sbjct: 351 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDEL-PFVRELEDA 409
Query: 119 GRKPVL------ADDSMKGKIRHQDGMFGKIPQGLMEDQISEI 155
+ + +K ++ + P+ + + IS I
Sbjct: 410 KNIVIAKQEKYEPSEEIKSEVLE---AVTEEPEDISDIVISLI 449
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 113 bits (286), Expect = 3e-29
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
+++F K E + + + G + + +L+ R F+ G +VLV T+V AR
Sbjct: 360 SIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419
Query: 62 GIDIPSLDAVINYNFPCKAKLF------VHRVGRCARAGRSGVAYSLVSSDELCYYL 112
GID+ ++ V+NY+ P +HR+GR R GR GV+ + V + +
Sbjct: 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEM 476
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 107 bits (270), Expect = 4e-29
Identities = 36/106 (33%), Positives = 61/106 (57%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
++F K V+ +H+ L L G+ + I+ D R F+ GK VLV TDVA++
Sbjct: 57 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 116
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
G+D P++ VINY+ P + + +VHR+GR +G +G+A + ++
Sbjct: 117 GLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKAC 162
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 107 bits (269), Expect = 8e-29
Identities = 43/106 (40%), Positives = 60/106 (56%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
+VFT TK E + + L G + ++ DL R+ F+ G++RVLV TDVAAR
Sbjct: 34 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAAR 93
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
G+DIP +D V++Y P +A+ + HR GR RAGR G L E
Sbjct: 94 GLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 139
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 111 bits (279), Expect = 8e-29
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
V+F + + ++L + I+ + R +F+ + R+LV T++ R
Sbjct: 253 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 312
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYL 112
G+DI ++ NY+ P + ++HRV R R G G+A + VS + L
Sbjct: 313 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 363
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 107 bits (268), Expect = 7e-28
Identities = 42/106 (39%), Positives = 60/106 (56%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
+VFT TK E + + L G + ++ D+ R+ F+ G++RVLV TDVAAR
Sbjct: 31 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAAR 90
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
G+DIP +D V++Y P +A+ + HR GR RAGR G L E
Sbjct: 91 GLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 136
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 108 bits (271), Expect = 2e-27
Identities = 41/114 (35%), Positives = 62/114 (54%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
T+VF TK + + L G + T I+ D R+ +F++GK +LV T VAAR
Sbjct: 279 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 338
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLL 115
G+DI ++ VIN++ P + +VHR+GR R G G+A S + + DLL
Sbjct: 339 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 392
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 107 bits (270), Expect = 3e-27
Identities = 37/106 (34%), Positives = 59/106 (55%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
T+VF TK +++ L +T I+ D + R+ F+ G ++VL+ T VA+R
Sbjct: 303 TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASR 362
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
G+DI ++ VINY+ P K +VHR+GR R G +G A S ++
Sbjct: 363 GLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 106 bits (267), Expect = 7e-27
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 3 VVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARG 62
++F T+ ++ L G + ++ R +F+ GK +VLV T+V ARG
Sbjct: 270 MIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 329
Query: 63 IDIPSLDAVINYNFPCKAKLF------VHRVGRCARAGRSGVAYSLVSSDELCYYL 112
ID+ + VIN++ P +HR+GR R G+ G+A ++V S L
Sbjct: 330 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNIL 385
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 105 bits (264), Expect = 7e-27
Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
+VF T+ V + ++ ++ + DL + R N F+ G+ +L+ TDVA+R
Sbjct: 223 VIVFVRTRNRVAKLVRLF----DNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASR 278
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
G+DIP ++ VIN++ P + ++HR+GR R GR G A + + ++
Sbjct: 279 GLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNEY 324
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 105 bits (265), Expect = 7e-27
Identities = 39/105 (37%), Positives = 62/105 (59%)
Query: 3 VVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARG 62
+VF TK + + +L G + I+ DL + R+ F+ KIR+L+ TDV +RG
Sbjct: 242 LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRG 301
Query: 63 IDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
ID+ L+ VINY+ P + ++HR+GR RAG+ G A S+++ E
Sbjct: 302 IDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE 346
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 105 bits (265), Expect = 2e-26
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
++F T+ ++ L G + ++ R +F+ GK +VLV T+V AR
Sbjct: 336 AMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 395
Query: 62 GIDIPSLDAVINYNFPCKAKLF------VHRVGRCARAGRSGVAYSLVSSDELCYYL 112
GID+ + VIN++ P +HR+GR R G+ G+A ++V S L
Sbjct: 396 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNIL 452
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 103 bits (259), Expect = 6e-26
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
+++F ATK ++ L G + ++ DL R F+ G+ +VL+ T+V AR
Sbjct: 246 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 305
Query: 62 GIDIPSLDAVINYNFPCKAKLF------VHRVGRCARAGRSGVAYSLVSSDELCYYL 112
GIDIP++ V+NY+ P A +HR+GR R GR GVA S V L
Sbjct: 306 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNIL 362
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 79.8 bits (197), Expect = 2e-17
Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDV--- 58
++F T+ + +++ L + +S+ + N F+ GKI +L+
Sbjct: 255 ILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKNFEDFKVGKINILIGVQAYYG 309
Query: 59 -AARGIDIPS-LDAVINYNFPCKAKL--FVHRVGRCARAGRSGV--AYSLVSSDELCYYL 112
RG+D+P + VI + P + ++ GR +R + S++ ++ +
Sbjct: 310 KLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFE 369
Query: 113 DLLLFLGRK 121
L L
Sbjct: 370 SLKTRLLLI 378
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 74.1 bits (181), Expect = 2e-15
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 3 VVFTATKYHVEYVHKIL--------GLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLV 54
+VFT + + + L G +S L +K+ +F G+ VLV
Sbjct: 365 IVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLV 424
Query: 55 VTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSD 106
T V G+D+P +D V+ Y A + R GR R G L++
Sbjct: 425 ATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILMAKG 475
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 56.4 bits (136), Expect = 2e-09
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 14/111 (12%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
++FT V + K+ + I R+ F+TG+ R +V + V
Sbjct: 352 IIIFTRHNELVYRISKVFLIPAI-----THRTSREEREEILEGFRTGRFRAIVSSQVLDE 406
Query: 62 GIDIPSLDAVI---NYNFPCKAKLFVHRVGRCARAGRSG---VAYSLVSSD 106
GID+P + + + ++ R+GR R + V Y L+S
Sbjct: 407 GIDVPDANVGVIMSGSGSA---REYIQRLGRILRPSKGKKEAVLYELISRG 454
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 54.5 bits (130), Expect = 8e-09
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 14/128 (10%)
Query: 1 MTVVFTATKYHVEYVHKILG------------LAGISSTYIYSDLDPTARKINAAKF-QT 47
T++F T+ V+ + K + L G T + + A+K F +
Sbjct: 391 KTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450
Query: 48 GKIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
G +L+ T VA GIDI + VI Y + + GR RA S S+D
Sbjct: 451 GDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSKCFLLTSSADV 509
Query: 108 LCYYLDLL 115
+ +
Sbjct: 510 IEKEKANM 517
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 52.3 bits (124), Expect = 5e-08
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 14/124 (11%)
Query: 2 TVVFTATKYHVEYVHKILG------------LAGISSTYIYSDLDPTARKINAAKFQTGK 49
T++F T+ V + K + L G + + ++K F+T K
Sbjct: 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693
Query: 50 I-RVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDEL 108
R+L+ T VA GIDI + V+ Y + + GR RA S ++ +
Sbjct: 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752
Query: 109 CYYL 112
Sbjct: 753 ENEK 756
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 51.5 bits (122), Expect = 1e-07
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 14/124 (11%)
Query: 2 TVVFTATKYHVEYVHKILG------------LAGISSTYIYSDLDPTARKINAAKF-QTG 48
T++F T+ V+ + + L G T + + A+K F +G
Sbjct: 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 460
Query: 49 KIRVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDEL 108
+L+ T VA GIDI + VI Y + + GR RA S ++ +
Sbjct: 461 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVI 519
Query: 109 CYYL 112
Sbjct: 520 EKEQ 523
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 51.1 bits (121), Expect = 1e-07
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 14/124 (11%)
Query: 2 TVVFTATKYHVEYVHKILG------------LAGISSTYIYSDLDPTARKINAAKFQTGK 49
T++F T+ V + K + L G + + ++K F+T K
Sbjct: 393 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 452
Query: 50 I-RVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDEL 108
R+L+ T VA GIDI + V+ Y + + GR RA S ++ +
Sbjct: 453 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 511
Query: 109 CYYL 112
Sbjct: 512 ENEK 515
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 50.9 bits (121), Expect = 2e-07
Identities = 26/176 (14%), Positives = 57/176 (32%), Gaps = 12/176 (6%)
Query: 3 VVFTATKYHVEYVHKIL-GLAGISSTYIYSDLDPTARKINAAKFQT--GKIRVLVVTDVA 59
+V A + ++L GI + + + R AA F +VL+ +++
Sbjct: 507 LVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG 566
Query: 60 ARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSG--VAYSLVSSDE----LCYYLD 113
+ G + ++ ++ P L R+GR R G++ + L +
Sbjct: 567 SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYH 626
Query: 114 LLLFLGRKPVLADDSMKGKIRHQ--DGMFGKIPQGLMEDQISEI-MNWVELDADME 166
L ++ + + + + +D I L A +E
Sbjct: 627 EGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLE 682
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 50.0 bits (118), Expect = 3e-07
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 14/124 (11%)
Query: 2 TVVFTATKYHVEYVHKILG------------LAGISSTYIYSDLDPTARKINAAKFQTGK 49
T++F T+ V + K + L G + + ++K F+T K
Sbjct: 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693
Query: 50 I-RVLVVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDEL 108
R+L+ T VA GIDI + V+ Y + + GR RA S ++ +
Sbjct: 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752
Query: 109 CYYL 112
Sbjct: 753 ENEK 756
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 39.5 bits (92), Expect = 7e-04
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 28 YIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN----YNFPCKAKLF 83
+ ++ L R + F+ G I+ +V T + GI+ P+ +I Y+ ++
Sbjct: 299 FHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIP 358
Query: 84 VHRVGRCA-RAGR-----SGVAYSLVSSDELCYYLDLLLFLGRKPV 123
+ V + RAGR G + +SD+ ++ +F + +
Sbjct: 359 IIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKL 404
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 38.6 bits (90), Expect = 0.002
Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 28 YIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN----YNFPCKAKLF 83
+ ++ L R++ F+ G I+V+V T A G+++P+ ++ ++ ++
Sbjct: 301 FHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD-GYSKRIK 359
Query: 84 VHRVGRCA-RAGR-----SGVAYSLVSSDELCYYLDLLLFLGRKPV 123
V + A RAGR G A +V + + +F + +
Sbjct: 360 VSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERI 405
>3h1t_A Type I site-specific restriction-modification system, R
(restriction) subunit; hydrolase, restriction enzyme
HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Length = 590
Score = 34.7 bits (80), Expect = 0.024
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDL-------DPTARKINAAKFQ---TGKIR 51
T+VF + H + + + L + + D + K + ++FQ T
Sbjct: 442 TIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPV 501
Query: 52 VLVVTDVAARGIDIPSLDAVI 72
+L + + G+D P+ V+
Sbjct: 502 ILTTSQLLTTGVDAPTCKNVV 522
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 32.7 bits (75), Expect = 0.11
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 3 VVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-AR 61
+++ ++ E V L GI + +++L+P + K+ +I+V+V T VA
Sbjct: 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT-VAFGM 329
Query: 62 GIDIPSLDAVINYNFP 77
GID P + VI+++
Sbjct: 330 GIDKPDVRFVIHHSMS 345
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 31.7 bits (72), Expect = 0.21
Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 23/112 (20%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
TV F A+ + L AG + T K + G ++ TD++
Sbjct: 193 TVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTE----YPKCKNGDWDFVITTDISEM 248
Query: 62 G--IDIPSLDAVINYNFPCKAKLFVHRVGRCA--------------RAGRSG 97
G VI+ K + GR R GR G
Sbjct: 249 GANFGA---SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVG 297
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 31.2 bits (71), Expect = 0.38
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 4 VFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLV----VTDVA 59
++ T E +++ L + + +K + KF G+I L+
Sbjct: 280 IYARTGEEAEEIYESLK-NKFRIGIVTAT-----KKGDYEKFVEGEIDHLIGTAHYYGTL 333
Query: 60 ARGIDIPSLDAVINY 74
RG+D+P I +
Sbjct: 334 VRGLDLPE---RIRF 345
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.40
Identities = 17/128 (13%), Positives = 43/128 (33%), Gaps = 37/128 (28%)
Query: 106 DELCYY-LDLLLFLGRKPVLADDSMKGKIRHQDG------MFG-------KIPQGLMEDQ 151
+ C D+ K +L+ + + I +D +F ++ Q +E+
Sbjct: 32 NFDCKDVQDMP-----KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 152 ISEIMNWVELDADMEGIQKTCNN---AYKKYVKSR----------PGASVESVKKVKELE 198
+ ++ M I+ + Y++ R +V ++ +L
Sbjct: 87 LRINYKFL-----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 199 LATMQVHP 206
A +++ P
Sbjct: 142 QALLELRP 149
Score = 28.3 bits (62), Expect = 3.2
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 15/93 (16%)
Query: 111 YLDLLLFLGRKPVLADDSMKGKIRHQDGMFGKIPQGLMEDQISEIMNWVELDADMEGIQK 170
+LD FL +K IRH D ++ + + ++ + D + +
Sbjct: 497 FLDFR-FLEQK-----------IRH-DSTAWNASGSIL-NTLQQLKFYKPYICDNDPKYE 542
Query: 171 TCNNAYKKYVKSRPGASVESVKKVKELELATMQ 203
NA ++ + ++ K L +A M
Sbjct: 543 RLVNAILDFLP-KIEENLICSKYTDLLRIALMA 574
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 30.9 bits (70), Expect = 0.47
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 31 SDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVIN--YNFPCKAKLFVHRVG 88
+ L R + F+ KI+V+V T A G+++P+ +I Y F K + +
Sbjct: 320 AGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379
Query: 89 R------CARAGR-----SGVAYSLVSSDELCYYLDLLLFLG 119
RAGR G + +V E + L
Sbjct: 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLS 421
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 29.1 bits (65), Expect = 1.0
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 202 MQVHPLFRNIGSAEQEKFNLLTKMSEY--RPPS 232
HPLF+N E E + L + ++ R S
Sbjct: 11 FYKHPLFKNFNVTESENY-LRSSTDDFLIRKGS 42
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 29.4 bits (67), Expect = 1.0
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 3 VVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVA-AR 61
+++ ++ VE L GIS+ ++ L+ R KFQ ++++V T VA
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT-VAFGM 298
Query: 62 GIDIPSLDAVINYNFP 77
GI+ P++ V++++ P
Sbjct: 299 GINKPNVRFVVHFDIP 314
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 28.0 bits (63), Expect = 2.2
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 195 KELELATMQVHPLFRNIGSAEQEKF-NLLTKMSEYRPPSTVLEFG 238
EL T + + + EQ + LL K+ + + V++ G
Sbjct: 31 AELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAK---KVIDIG 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 2.3
Identities = 34/250 (13%), Positives = 66/250 (26%), Gaps = 80/250 (32%)
Query: 19 LGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI---NYN 75
+G+ Y + L P+ + + + +L + + + + N +
Sbjct: 306 IGVRC-YEAYPNTSLPPSILEDSLENNEGVPSPMLSI-----SNLTQEQVQDYVNKTNSH 359
Query: 76 FPCKAKLFVHRV-GRCARAGR----SGVAYSLVSSDELCYYLDLLL-------------- 116
P ++ + V G + SG SL Y L+L L
Sbjct: 360 LPAGKQVEISLVNGA-----KNLVVSGPPQSL-------YGLNLTLRKAKAPSGLDQSRI 407
Query: 117 -FLGRKPVLADDSMKGKIRHQDGMFGKI------PQGLMEDQISEIMNWVELDADMEGIQ 169
F RK K ++ F + L+ I D +
Sbjct: 408 PFSERKL---------KFSNR---FLPVASPFHSH--LLVPASDLINK----DLVKNNVS 449
Query: 170 KTCNNAYKKYVKSRPGASVESVKKVKEL-ELATMQVHPLFRNIGSAEQEKFNLLTKMSEY 228
+ V +L L+ + I K+ T+
Sbjct: 450 ---------FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR-LPVKWETTTQFK-- 497
Query: 229 RPPSTVLEFG 238
+ +L+FG
Sbjct: 498 --ATHILDFG 505
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET:
GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB:
1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* 4du6_A*
Length = 221
Score = 27.2 bits (61), Expect = 4.4
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 148 MEDQISEIMNWVELDADMEGIQKTCNNAYKKYVK 181
+ ++EIM + LD + + +T + K YV
Sbjct: 39 IAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVD 72
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 27.5 bits (60), Expect = 5.1
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 30 YSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI 72
+ L P +++ F G I+VL T+ A G+++P+ +
Sbjct: 406 HGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIF 448
>2r4v_A XAP121, chloride intracellular channel protein 2; chloride
intracellular channels, CLIC2, pore-forming protein
ryanodine receptor, chloride channel; HET: GSH; 1.85A
{Homo sapiens} PDB: 2r5g_A 2per_A*
Length = 247
Score = 26.8 bits (59), Expect = 6.0
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 117 FLGRKPVLADDSMKGKIRHQDGMFGKIPQGLMEDQISEIMNWVELDADMEGIQKTCN--- 173
G + LAD S+ K+ K + + S + ++ E TC
Sbjct: 174 LDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDK 233
Query: 174 ---NAYKKYVKSR 183
N Y K +
Sbjct: 234 EIENTYANVAKQK 246
>2hku_A A putative transcriptional regulator; structural genomics, APC6040,
TET rhodococcus SP. RHA1, PSI-2, protein structure
initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP:
a.4.1.9 a.121.1.1
Length = 215
Score = 26.6 bits (58), Expect = 7.0
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 55 VTDVAAR-GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLD 113
+T + A G + Y + K +LFV +++ + Y +
Sbjct: 42 ITQICAAAGAHPNQ----VTYYYGSKERLFVEVACAAVLRAGKRAEDDAATAETVGDYTE 97
Query: 114 LLL 116
L+
Sbjct: 98 KLV 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.398
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,896,507
Number of extensions: 234925
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 54
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)