RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18034
(251 letters)
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 92.7 bits (230), Expect = 7e-23
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINA----------AKFQTGKIR 51
++F +K + + L GI++ Y LD + + TG
Sbjct: 39 HLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFD 98
Query: 52 VLVVTDVAARGIDIPSLDA---VINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSS 105
++ + SLD + P A R GR R G+ G+ +
Sbjct: 99 SVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPG 154
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 74.6 bits (182), Expect = 3e-17
Identities = 41/121 (33%), Positives = 67/121 (55%)
Query: 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAA 60
V+F T+ VE + L + + IYSDL R +F++G R+L+ TD+ A
Sbjct: 29 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 88
Query: 61 RGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGR 120
RGID+ + VINY+ P + ++HR+GR R GR GVA + V+++++ +L F
Sbjct: 89 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 148
Query: 121 K 121
+
Sbjct: 149 Q 149
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 76.1 bits (186), Expect = 7e-17
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINA--------AKFQTGKIRVL 53
+VFT + + + L GI + + + +F G+ VL
Sbjct: 164 IIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 223
Query: 54 VVTDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSS---DELCY 110
V T V G+D+P +D V+ Y A + R GR R G L++ DE Y
Sbjct: 224 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGTRDEAYY 282
Query: 111 Y 111
+
Sbjct: 283 W 283
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 68.3 bits (166), Expect = 2e-14
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 15/139 (10%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVT----D 57
+++ T E +++ L + +K + KF G+I L+ T
Sbjct: 28 GIIYARTGEEAEEIYESL------KNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYG 81
Query: 58 VAARGIDIP-SLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLL 116
RG+D+P + + P F + V + LL
Sbjct: 82 TLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLP 137
Query: 117 FLGRKPVLADDSMKGKIRH 135
+ R + +K +
Sbjct: 138 AVERHIDEVREILKKVMGK 156
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 62.6 bits (151), Expect = 7e-13
Identities = 39/120 (32%), Positives = 71/120 (59%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
V+F TK V+++ + + A + + ++ D+ R+ +F++G RVL+ TDV AR
Sbjct: 37 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 96
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRK 121
G+D+P + +INY+ P +L++HR+GR R GR GVA + V +D++ D+ + +
Sbjct: 97 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 156
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 59.6 bits (143), Expect = 7e-12
Identities = 40/120 (33%), Positives = 65/120 (54%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
+VF TK + + +L G + I+ DL + R+ F+ KIR+L+ TDV +R
Sbjct: 31 GLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSR 90
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRK 121
GID+ L+ VINY+ P + ++HR+GR RAG+ G A S+++ E + + K
Sbjct: 91 GIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 150
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 57.8 bits (139), Expect = 3e-11
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
++F +K + + L GI++ Y LD + T V+V TD
Sbjct: 38 HLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPTNGDVVVVATDALMT 90
Query: 62 GIDIPS---LDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDE 107
G +D + P A R GR R G+ G+ Y V+ E
Sbjct: 91 GFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 57.1 bits (137), Expect = 9e-11
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAA 60
T+V T TK E + L AGI Y++S++ R + GK VLV ++
Sbjct: 33 RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 92
Query: 61 RGIDIPSLDAVINYNFPCKAKLFVHR--VGRCARAGRSGVAYSLVSSDELCYYL 112
G+DIP + V + + L R + RA R+ + ++ +D + +
Sbjct: 93 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTITKSM 146
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 56.2 bits (134), Expect = 2e-10
Identities = 23/110 (20%), Positives = 48/110 (43%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
+++ ++ VE L GIS+ ++ L+ R KFQ ++++V T
Sbjct: 33 GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 92
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYY 111
GI+ P++ V++++ P + + GR R G A ++ +
Sbjct: 93 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWL 142
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 56.1 bits (134), Expect = 7e-10
Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 23/126 (18%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
TV F + + L G + + K +T +V TD++
Sbjct: 181 TVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEM 236
Query: 62 GIDIP---------SLDAVINYNFPCKAKLF----------VHRVGRCARAGRSGVAYSL 102
G + + VI + + L R GR R ++ +
Sbjct: 237 GANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYI 296
Query: 103 VSSDEL 108
+ L
Sbjct: 297 YMGEPL 302
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 54.1 bits (129), Expect = 1e-09
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
++FT V + K+ + I R+ F+TG+ R +V + V
Sbjct: 96 IIIFTRHNELVYRISKVFLIP-----AITHRTSREEREEILEGFRTGRFRAIVSSQVLDE 150
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVA---YSLVSSD 106
GID+P + + + A+ ++ R+GR R + Y L+S
Sbjct: 151 GIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 198
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 53.5 bits (127), Expect = 2e-09
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
++F T+ + +++ + G + + +L R +F+ GK +VL+ T+V AR
Sbjct: 35 AIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCAR 94
Query: 62 GIDIPSLDAVINYNFPCKAKL------FVHRVGRCARAGRSGVAYSLVSSDELCYYLDLL 115
GID+ + V+N++ P K ++HR+GR R G+ G+A++++ DEL + +
Sbjct: 95 GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQ 154
Query: 116 LFLGRK 121
Sbjct: 155 DHFNSS 160
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 49.3 bits (117), Expect = 4e-08
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 1 MTVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAA 60
T+V T E + L GI + Y++ +LD R+ + G LV ++
Sbjct: 33 RTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR 92
Query: 61 RGIDIPSLDAVINYN-----FPCKAKLFVHRVGRCARAGRSGVAY 100
G+DIP + V + F + + +GR AR R V
Sbjct: 93 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL 137
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 43.1 bits (100), Expect = 6e-06
Identities = 37/120 (30%), Positives = 67/120 (55%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
++F + VE + K + G S Y ++ + R +F+ GK+R LV +D+ R
Sbjct: 35 AIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTR 94
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLLLFLGRK 121
GIDI +++ VIN++FP A+ ++HR+GR R G G+A +L++ ++ + LG +
Sbjct: 95 GIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE 154
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 42.6 bits (99), Expect = 1e-05
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 28 YIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPSLDAVI-------NYNFPCKA 80
+ ++ L R++ F+ G I+V+V T A G+++P+ ++ Y+ K
Sbjct: 99 FHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKV 158
Query: 81 KLFVHRVGRCARAGR--SGVAYSLVSSDELCYYLDLLLF 117
+ GR R G G A +V + + +F
Sbjct: 159 SEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIF 197
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 39.3 bits (90), Expect = 1e-04
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
V+F + + ++L + I+ + R +F+ + R+LV T++ R
Sbjct: 30 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 89
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLDLL 115
G+DI ++ NY+ P + ++HRV R R G G+A + VS + L+ +
Sbjct: 90 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 143
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 37.7 bits (87), Expect = 8e-04
Identities = 20/130 (15%), Positives = 35/130 (26%), Gaps = 25/130 (19%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
T F + + L AG S + + + K ++ TD+A
Sbjct: 39 TAWFLPSIRAANVMAASLRKAGKSVVVLNRKT----FEREYPTIKQKKPDFILATDIAEM 94
Query: 62 GIDIPSLDAVINYNFPCKAKLFVHRVG----------------RCARAGRSGVAYSLVSS 105
G ++ ++ V++ K L R R GR+
Sbjct: 95 GANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR----DG 149
Query: 106 DELCYYLDLL 115
D Y
Sbjct: 150 DSYYYSEPTS 159
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 36.4 bits (84), Expect = 0.001
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 18/146 (12%)
Query: 2 TVVFTATKYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAAR 61
+V T E + K+L GI + + R+ + K V + T++A R
Sbjct: 37 VLVGTVAVETSELISKLLKNKGIPHQVLNAK--NHEREAQIIEEAGQKGAVTIATNMAGR 94
Query: 62 GIDIPSLDAVINYN--------FPCKAKLFVHRVGRCARAGRSGVAYSLVSSDELCYYLD 113
G DI + V ++ GR R G G+ +S ++ +
Sbjct: 95 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED-----E 149
Query: 114 LLLFLGRKPVLADDSMKGKIRHQDGM 139
L+ G + +M + D
Sbjct: 150 LMRRFGAERT---MAMLDRFGMDDST 172
>d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1
(clic1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 149
Score = 28.5 bits (63), Expect = 0.51
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 117 FLGRKPVLADDSMKGKIRHQDGMFGKIPQGLMEDQISEIMNWVELDADMEGIQKTCN--- 173
G + LAD ++ K+ + K + + + ++ E TC
Sbjct: 77 LDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCPDDE 136
Query: 174 ---NAYKKYVK 181
AY++ K
Sbjct: 137 EIELAYEQVAK 147
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 27.3 bits (60), Expect = 1.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 147 LMEDQISEIMNWVELDADMEGIQKTCNNAYKKYVK 181
L+ ++EIM + LD + + +T + K YV
Sbjct: 38 LIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVD 72
>d1nofa2 c.1.8.3 (A:44-320) Glycosyl hydrolase family 5 xylanase,
catalytic domain {Erwinia chrysanthemi [TaxId: 556]}
Length = 277
Score = 26.6 bits (58), Expect = 3.1
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 18 ILGLAGISSTYIYSDLDPTARKINAAKFQTGK----IRVLVVTDVAARGIDIPSLDAVIN 73
I G G+S +DL +RV + D + I +PS ++
Sbjct: 1 IQGFGGMSGVGWINDLTTEQINTAYGSGVGQIGLSIMRVRIDPDSSKWNIQLPSARQAVS 60
Query: 74 YNFP 77
Sbjct: 61 LGAK 64
>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 25.5 bits (55), Expect = 4.0
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 106 DELCYYLDLL-LFLGRKPVLADDSMKGKIRHQDGMFGKIPQGLMEDQISEIMNWVELDAD 164
+ + L +LG + L + D + L+ + + N L
Sbjct: 47 YNAPHLMQDLDTYLGGREWLIGM----SVTWADFYWEICSTTLLVFKPDLLDNHPRLVTL 102
Query: 165 MEGIQKTCNNAYKKYVKSRP 184
+ +Q A ++K RP
Sbjct: 103 RKKVQA--IPAVANWIKRRP 120
>d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 25.7 bits (56), Expect = 4.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 148 MEDQISEIMNWVELDADMEGIQKT 171
++ +E + + D EG+ KT
Sbjct: 7 LQALAAEWLQVIGEDPGREGLLKT 30
>d1o8ra_ d.234.1.1 (A:) Proguanylin {Human (Homo sapiens) [TaxId:
9606]}
Length = 94
Score = 24.9 bits (54), Expect = 4.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 187 SVESVKKVKELELATMQVHPLFRNI 211
S+ESVKK+K+L+ RN
Sbjct: 11 SLESVKKLKDLQEPQEPRVGKLRNF 35
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 25.7 bits (55), Expect = 5.9
Identities = 4/40 (10%), Positives = 15/40 (37%)
Query: 56 TDVAARGIDIPSLDAVINYNFPCKAKLFVHRVGRCARAGR 95
+ G+++ + ++ ++ + R R G+
Sbjct: 178 SKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQ 217
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal
domain {Mycoplasma pneumoniae [TaxId: 2104]}
Length = 132
Score = 25.1 bits (55), Expect = 5.9
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 10/71 (14%)
Query: 9 KYHVEYVHKILGLAGISSTYIYSDLDPTARKINAAKFQTGKIRVLVVTDVAARGIDIPS- 67
+ V ILG + S ++ +++T + P+
Sbjct: 47 SSQIGSVA-ILGKREFG--F-LSQKTLVEQQQILHNLLKLNPPAIILT----KSFTDPTV 98
Query: 68 -LDAVINYNFP 77
L Y P
Sbjct: 99 LLQVNQTYQVP 109
>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 194
Score = 25.3 bits (55), Expect = 6.4
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 148 MEDQISEIMNWVELDADMEGIQKT 171
+ S I+ + D +G+ KT
Sbjct: 15 LAAAYSSILRSLGEDPQRQGLLKT 38
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 295
Score = 25.3 bits (55), Expect = 6.9
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 145 QGLMEDQISEI---MNWVELDADMEGIQKTCNNAYKKYVKS 182
QG + EI W+ + +E +K Y KY++
Sbjct: 247 QGFYIACLEEIAYNNGWITREDVLEMAEKLEKTDYGKYLRD 287
>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 25.1 bits (54), Expect = 7.2
Identities = 5/57 (8%), Positives = 18/57 (31%)
Query: 133 IRHQDGMFGKIPQGLMEDQISEIMNWVELDADMEGIQKTCNNAYKKYVKSRPGASVE 189
+ K + + ++ + + +++ +S P A+V+
Sbjct: 91 WSQELRPEAKNFKTFFVHTPNRTYYLMDPSGNAHKWCRKIQEVWRQRYQSHPDAAVQ 147
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
Length = 291
Score = 25.5 bits (56), Expect = 7.5
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 145 QGLMEDQISEI---MNWVELDADMEGIQKTCNNAYKKY----VKSRP 184
QG + EI W++ + Y +Y +++RP
Sbjct: 245 QGFKIACLEEIAWRNGWLDDEGVKRAASSLAKTGYGQYLLELLRARP 291
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.398
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 930,116
Number of extensions: 42019
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 31
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)