Query psy18035
Match_columns 104
No_of_seqs 210 out of 1118
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 20:47:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331|consensus 100.0 3E-30 6.4E-35 187.8 10.9 101 3-103 163-266 (519)
2 KOG0339|consensus 100.0 9.2E-29 2E-33 178.7 10.8 102 2-103 293-397 (731)
3 KOG0330|consensus 99.9 6.9E-28 1.5E-32 169.4 7.9 100 4-103 128-231 (476)
4 COG0513 SrmB Superfamily II DN 99.9 6.9E-27 1.5E-31 172.2 11.0 96 8-103 102-201 (513)
5 KOG0338|consensus 99.9 6.9E-27 1.5E-31 168.9 9.9 101 4-104 251-355 (691)
6 KOG0335|consensus 99.9 9.4E-27 2E-31 167.7 7.7 100 4-103 151-254 (482)
7 KOG0348|consensus 99.9 1.9E-26 4.2E-31 167.3 8.5 101 3-103 209-314 (708)
8 KOG0342|consensus 99.9 3.4E-25 7.3E-30 159.1 10.2 102 2-103 151-257 (543)
9 KOG0345|consensus 99.9 2E-24 4.3E-29 154.8 9.5 97 6-102 80-183 (567)
10 KOG0341|consensus 99.9 3E-25 6.5E-30 156.9 5.0 100 3-102 244-352 (610)
11 KOG0347|consensus 99.9 5.4E-24 1.2E-28 155.1 10.1 98 5-102 263-366 (731)
12 KOG0336|consensus 99.9 4.4E-24 9.5E-29 151.8 8.7 98 3-101 292-392 (629)
13 KOG0333|consensus 99.9 3.4E-24 7.3E-29 155.4 7.6 100 4-103 321-423 (673)
14 KOG0343|consensus 99.9 1.7E-23 3.7E-28 152.6 10.2 101 2-103 138-242 (758)
15 PTZ00110 helicase; Provisional 99.9 2.8E-23 6E-28 154.1 11.1 100 4-103 202-304 (545)
16 PRK04837 ATP-dependent RNA hel 99.9 4.9E-23 1.1E-27 148.6 11.9 99 4-102 82-183 (423)
17 KOG0328|consensus 99.9 2.1E-23 4.6E-28 142.5 9.3 101 2-102 92-195 (400)
18 KOG0326|consensus 99.9 2.7E-23 5.9E-28 144.0 6.9 99 4-102 152-253 (459)
19 KOG0350|consensus 99.9 6.8E-23 1.5E-27 147.9 9.1 100 3-102 213-321 (620)
20 PLN00206 DEAD-box ATP-dependen 99.9 2.4E-22 5.1E-27 148.4 11.5 100 4-103 195-297 (518)
21 KOG0334|consensus 99.9 2.3E-22 5E-27 153.8 8.6 100 4-103 437-542 (997)
22 PRK10590 ATP-dependent RNA hel 99.9 1.5E-21 3.3E-26 142.2 12.1 100 4-103 74-176 (456)
23 PRK11634 ATP-dependent RNA hel 99.9 1.7E-21 3.7E-26 146.4 11.5 100 4-103 73-176 (629)
24 PRK11776 ATP-dependent RNA hel 99.9 1.8E-21 4E-26 141.7 11.3 100 4-103 71-174 (460)
25 PRK11192 ATP-dependent RNA hel 99.9 3.1E-21 6.6E-26 139.5 12.1 98 5-102 73-173 (434)
26 PRK04537 ATP-dependent RNA hel 99.9 4.1E-21 9E-26 143.2 11.3 98 5-102 84-185 (572)
27 KOG0337|consensus 99.9 4.1E-22 9E-27 141.6 5.5 100 4-103 89-191 (529)
28 KOG4284|consensus 99.9 2.5E-21 5.5E-26 143.5 9.5 100 3-103 91-195 (980)
29 KOG0346|consensus 99.9 1.3E-21 2.8E-26 139.8 7.6 101 2-102 90-196 (569)
30 KOG0329|consensus 99.8 8.7E-21 1.9E-25 128.5 8.5 98 5-102 110-212 (387)
31 PRK01297 ATP-dependent RNA hel 99.8 3E-20 6.6E-25 135.9 11.8 99 5-103 162-264 (475)
32 KOG0340|consensus 99.8 6.2E-21 1.3E-25 133.4 6.9 99 4-102 74-179 (442)
33 KOG0327|consensus 99.8 3.1E-20 6.8E-25 130.4 5.8 100 3-102 92-195 (397)
34 PTZ00424 helicase 45; Provisio 99.8 4.1E-18 9E-23 121.8 12.0 99 4-102 95-196 (401)
35 KOG0349|consensus 99.8 1.7E-18 3.6E-23 124.5 6.1 100 3-102 284-389 (725)
36 cd00268 DEADc DEAD-box helicas 99.7 4.7E-17 1E-21 106.8 11.8 99 4-102 68-169 (203)
37 PF00270 DEAD: DEAD/DEAH box h 99.7 3.6E-16 7.8E-21 99.5 10.6 97 6-102 45-145 (169)
38 PRK09401 reverse gyrase; Revie 99.7 2.4E-16 5.2E-21 124.9 11.1 97 4-102 122-239 (1176)
39 TIGR02621 cas3_GSU0051 CRISPR- 99.7 2E-16 4.4E-21 121.4 10.2 93 4-102 60-195 (844)
40 TIGR01054 rgy reverse gyrase. 99.6 1.7E-15 3.6E-20 120.2 10.1 95 4-101 120-236 (1171)
41 PRK12899 secA preprotein trans 99.6 1.5E-15 3.3E-20 117.0 9.1 82 7-90 137-229 (970)
42 TIGR03817 DECH_helic helicase/ 99.6 8E-15 1.7E-19 112.3 10.0 96 4-102 80-182 (742)
43 PRK14701 reverse gyrase; Provi 99.6 6.3E-15 1.4E-19 119.4 9.7 94 4-99 121-234 (1638)
44 PRK09751 putative ATP-dependen 99.6 9E-15 2E-19 117.5 10.4 89 4-92 36-140 (1490)
45 KOG0332|consensus 99.6 2.8E-15 6.1E-20 105.9 4.6 96 3-101 158-258 (477)
46 PRK13767 ATP-dependent helicas 99.6 1.5E-14 3.2E-19 112.6 9.0 96 4-99 83-195 (876)
47 KOG0344|consensus 99.5 3.7E-15 8E-20 109.5 3.7 102 3-104 207-317 (593)
48 PRK02362 ski2-like helicase; P 99.5 3.1E-14 6.7E-19 109.1 8.5 95 4-102 66-163 (737)
49 PRK13104 secA preprotein trans 99.5 5.2E-14 1.1E-18 108.5 9.7 83 5-89 123-215 (896)
50 PRK00254 ski2-like helicase; P 99.5 8E-14 1.7E-18 106.6 8.9 95 4-102 67-164 (720)
51 TIGR00963 secA preprotein tran 99.5 8E-14 1.7E-18 106.0 8.7 84 5-90 97-190 (745)
52 PRK10917 ATP-dependent DNA hel 99.5 1E-13 2.3E-18 105.5 8.5 80 4-88 309-395 (681)
53 TIGR00643 recG ATP-dependent D 99.5 1.9E-13 4.2E-18 103.3 8.9 80 4-88 283-369 (630)
54 PRK09200 preprotein translocas 99.4 5.4E-13 1.2E-17 102.4 8.0 85 4-89 118-212 (790)
55 PRK01172 ski2-like helicase; P 99.4 7.7E-13 1.7E-17 100.6 8.4 94 5-102 65-161 (674)
56 PRK10689 transcription-repair 99.4 1.3E-12 2.8E-17 103.9 9.5 80 4-88 648-734 (1147)
57 TIGR03714 secA2 accessory Sec 99.4 2.2E-12 4.7E-17 98.6 8.7 87 4-90 110-209 (762)
58 TIGR00580 mfd transcription-re 99.4 3.2E-12 7E-17 99.9 8.7 80 4-88 499-585 (926)
59 PRK12904 preprotein translocas 99.3 6.3E-12 1.4E-16 96.8 8.4 83 5-89 122-214 (830)
60 COG1201 Lhr Lhr-like helicases 99.3 5.3E-12 1.1E-16 97.0 6.7 88 4-91 72-164 (814)
61 COG1111 MPH1 ERCC4-like helica 99.2 4.8E-11 1.1E-15 87.1 8.4 84 7-91 60-146 (542)
62 smart00487 DEXDc DEAD-like hel 99.2 6.8E-10 1.5E-14 71.1 10.8 97 6-102 55-155 (201)
63 PRK12898 secA preprotein trans 99.2 1.5E-10 3.2E-15 87.7 8.1 84 4-89 143-255 (656)
64 PHA02558 uvsW UvsW helicase; P 99.2 1.4E-10 3E-15 85.9 7.5 85 5-99 158-245 (501)
65 PRK13766 Hef nuclease; Provisi 99.2 4.7E-10 1E-14 86.5 10.7 86 5-91 58-146 (773)
66 TIGR00614 recQ_fam ATP-depende 99.1 1.7E-10 3.6E-15 84.8 7.5 92 5-100 51-153 (470)
67 PLN03137 ATP-dependent DNA hel 99.1 2.1E-10 4.6E-15 90.7 8.3 91 5-100 500-607 (1195)
68 cd00046 DEXDc DEAD-like helica 99.1 1.8E-09 4E-14 65.4 10.3 91 4-95 29-122 (144)
69 PRK13107 preprotein translocas 99.1 2.5E-10 5.5E-15 88.4 7.1 84 5-90 123-216 (908)
70 COG1204 Superfamily II helicas 99.1 2.1E-10 4.5E-15 88.4 6.0 92 5-100 76-170 (766)
71 TIGR01970 DEAH_box_HrpB ATP-de 99.1 9.9E-10 2.1E-14 85.3 9.3 82 5-93 45-131 (819)
72 PF14617 CMS1: U3-containing 9 99.1 4.8E-10 1E-14 76.5 6.3 81 4-85 125-210 (252)
73 TIGR01389 recQ ATP-dependent D 99.1 1.1E-09 2.3E-14 82.5 8.5 92 6-101 54-154 (591)
74 COG1200 RecG RecG-like helicas 99.0 1.3E-09 2.8E-14 82.1 7.9 80 4-88 310-396 (677)
75 COG1205 Distinct helicase fami 99.0 1.8E-09 3.9E-14 84.2 9.0 94 7-101 117-219 (851)
76 PRK11664 ATP-dependent RNA hel 99.0 1.2E-09 2.5E-14 84.9 7.7 80 5-91 48-132 (812)
77 PRK11057 ATP-dependent DNA hel 99.0 2.7E-09 5.8E-14 80.7 7.9 91 6-100 66-165 (607)
78 PRK05580 primosome assembly pr 98.9 5.9E-09 1.3E-13 79.8 8.1 75 5-89 190-271 (679)
79 PHA02653 RNA helicase NPH-II; 98.9 7.6E-09 1.6E-13 79.0 8.3 81 4-92 221-307 (675)
80 COG1197 Mfd Transcription-repa 98.9 1.2E-08 2.5E-13 80.7 8.6 92 3-100 641-739 (1139)
81 TIGR01587 cas3_core CRISPR-ass 98.7 3.3E-08 7.1E-13 70.0 5.9 89 4-95 28-143 (358)
82 PRK11131 ATP-dependent RNA hel 98.7 4.9E-08 1.1E-12 78.6 6.0 77 14-101 134-213 (1294)
83 TIGR00595 priA primosomal prot 98.7 1.8E-07 3.9E-12 69.6 8.4 76 4-89 24-106 (505)
84 TIGR03158 cas3_cyano CRISPR-as 98.5 1.4E-06 2.9E-11 62.3 8.6 86 5-90 39-159 (357)
85 COG1202 Superfamily II helicas 98.4 4.2E-07 9.1E-12 68.2 5.5 87 5-92 261-354 (830)
86 PRK13103 secA preprotein trans 98.4 8.8E-07 1.9E-11 69.3 7.4 84 4-89 122-215 (913)
87 KOG0354|consensus 98.4 7.2E-07 1.6E-11 68.4 5.5 93 4-98 105-202 (746)
88 KOG0952|consensus 98.4 6.6E-07 1.4E-11 70.5 5.4 95 3-101 162-262 (1230)
89 TIGR01967 DEAH_box_HrpA ATP-de 98.2 3.2E-06 6.9E-11 68.5 5.3 50 51-101 155-206 (1283)
90 COG1110 Reverse gyrase [DNA re 98.0 4.6E-05 9.9E-10 60.5 8.5 95 3-101 123-226 (1187)
91 PRK12326 preprotein translocas 98.0 2.3E-05 5E-10 60.5 6.4 84 4-89 118-211 (764)
92 PRK12906 secA preprotein trans 97.9 3.4E-05 7.3E-10 60.2 6.4 84 4-89 120-213 (796)
93 TIGR00348 hsdR type I site-spe 97.8 8.4E-05 1.8E-09 57.2 7.6 92 4-101 292-390 (667)
94 COG0514 RecQ Superfamily II DN 97.8 7.7E-05 1.7E-09 56.5 6.3 94 7-101 59-158 (590)
95 PF00176 SNF2_N: SNF2 family N 97.8 8.8E-05 1.9E-09 50.8 6.1 83 7-89 60-147 (299)
96 TIGR00603 rad25 DNA repair hel 97.7 7.7E-05 1.7E-09 57.8 5.9 88 6-98 299-397 (732)
97 KOG0385|consensus 97.7 0.00013 2.9E-09 56.6 6.2 84 4-91 217-304 (971)
98 PF07517 SecA_DEAD: SecA DEAD- 97.6 0.00092 2E-08 46.3 9.3 74 14-89 130-210 (266)
99 PRK11448 hsdR type I restricti 97.6 0.00016 3.5E-09 58.5 5.6 83 5-89 463-553 (1123)
100 PF06862 DUF1253: Protein of u 97.5 0.00047 1E-08 50.8 7.2 44 52-95 131-180 (442)
101 TIGR03117 cas_csf4 CRISPR-asso 97.5 0.0011 2.4E-08 50.9 9.1 39 52-90 182-220 (636)
102 KOG0351|consensus 97.5 0.00052 1.1E-08 54.7 7.3 94 6-100 305-411 (941)
103 PF04851 ResIII: Type III rest 97.4 0.00046 9.9E-09 43.9 5.5 86 7-92 52-162 (184)
104 COG4581 Superfamily II RNA hel 97.4 0.00014 3.1E-09 58.0 3.7 81 4-91 161-244 (1041)
105 PRK12902 secA preprotein trans 97.4 0.00057 1.2E-08 54.0 6.7 83 5-89 126-218 (939)
106 KOG3089|consensus 97.4 0.00037 8E-09 47.0 4.6 43 42-84 185-228 (271)
107 CHL00122 secA preprotein trans 97.4 0.0005 1.1E-08 54.1 5.7 83 5-89 117-209 (870)
108 KOG0947|consensus 97.3 0.00025 5.5E-09 56.2 3.9 77 4-91 339-418 (1248)
109 PRK07246 bifunctional ATP-depe 97.3 0.0022 4.9E-08 50.6 8.4 38 4-41 290-331 (820)
110 KOG0951|consensus 97.2 0.00051 1.1E-08 55.9 4.8 92 5-100 364-460 (1674)
111 PLN03142 Probable chromatin-re 97.2 0.0013 2.9E-08 52.9 7.0 81 7-91 221-306 (1033)
112 PRK14873 primosome assembly pr 97.1 0.0024 5.2E-08 49.4 7.3 73 4-86 187-267 (665)
113 COG1198 PriA Primosomal protei 97.0 0.0017 3.6E-08 50.6 5.4 73 4-87 244-324 (730)
114 PRK04914 ATP-dependent helicas 97.0 0.0013 2.9E-08 52.6 4.7 81 6-89 200-285 (956)
115 PF07652 Flavi_DEAD: Flaviviru 96.7 0.0061 1.3E-07 38.7 5.1 73 4-88 32-107 (148)
116 KOG0352|consensus 96.6 0.0077 1.7E-07 44.6 5.8 91 7-99 63-166 (641)
117 KOG2340|consensus 96.6 0.0059 1.3E-07 46.1 5.3 44 52-95 385-434 (698)
118 KOG0389|consensus 96.5 0.0031 6.8E-08 49.3 3.8 81 3-92 447-540 (941)
119 KOG0387|consensus 96.5 0.0084 1.8E-07 47.1 6.0 83 6-92 256-353 (923)
120 COG1061 SSL2 DNA or RNA helica 96.5 0.0065 1.4E-07 44.8 5.2 84 7-99 82-169 (442)
121 PRK09694 helicase Cas3; Provis 96.4 0.014 3E-07 46.6 6.6 84 5-88 331-451 (878)
122 KOG0948|consensus 95.9 0.017 3.7E-07 45.4 5.0 76 5-91 172-250 (1041)
123 KOG0949|consensus 95.9 0.0097 2.1E-07 47.9 3.5 82 7-90 558-646 (1330)
124 KOG4439|consensus 95.9 0.005 1.1E-07 47.8 1.9 84 7-91 385-478 (901)
125 PF09848 DUF2075: Uncharacteri 95.7 0.084 1.8E-06 37.8 7.6 88 14-103 17-117 (352)
126 PRK12903 secA preprotein trans 95.3 0.065 1.4E-06 42.8 6.1 80 8-89 122-211 (925)
127 COG0610 Type I site-specific r 95.3 0.08 1.7E-06 42.8 6.7 91 4-98 302-398 (962)
128 KOG1001|consensus 95.2 0.032 6.8E-07 43.4 4.3 77 5-91 189-269 (674)
129 PRK10689 transcription-repair 95.2 0.14 3E-06 42.2 7.8 76 5-88 809-891 (1147)
130 TIGR00580 mfd transcription-re 95.1 0.19 4.2E-06 40.6 8.3 77 4-88 659-742 (926)
131 KOG0392|consensus 95.0 0.063 1.4E-06 44.3 5.5 80 8-91 1034-1115(1549)
132 KOG0951|consensus 94.9 0.13 2.8E-06 42.8 6.9 77 5-89 1186-1266(1674)
133 KOG0391|consensus 94.8 0.055 1.2E-06 44.7 4.5 76 9-90 669-751 (1958)
134 TIGR00643 recG ATP-dependent D 94.7 0.21 4.7E-06 38.5 7.5 79 4-88 447-538 (630)
135 COG4096 HsdR Type I site-speci 94.7 0.2 4.4E-06 39.8 7.2 77 6-91 216-300 (875)
136 KOG0384|consensus 94.4 0.078 1.7E-06 43.6 4.7 82 4-89 420-510 (1373)
137 KOG0390|consensus 94.2 0.19 4E-06 39.8 6.2 84 6-91 299-391 (776)
138 TIGR00596 rad1 DNA repair prot 94.2 0.067 1.4E-06 42.5 3.8 49 52-100 7-55 (814)
139 COG4098 comFA Superfamily II D 93.9 0.3 6.5E-06 35.5 6.2 69 4-88 143-214 (441)
140 COG1200 RecG RecG-like helicas 93.8 0.43 9.4E-06 37.2 7.3 77 4-88 472-563 (677)
141 TIGR01407 dinG_rel DnaQ family 93.6 0.14 3.1E-06 40.8 4.7 41 51-91 415-455 (850)
142 PF06733 DEAD_2: DEAD_2; Inte 93.5 0.11 2.4E-06 33.3 3.4 41 50-91 117-160 (174)
143 KOG0353|consensus 93.2 0.3 6.5E-06 36.1 5.4 87 6-97 135-238 (695)
144 PRK12900 secA preprotein trans 93.1 0.28 6E-06 39.9 5.6 74 14-89 191-271 (1025)
145 COG0553 HepA Superfamily II DN 92.8 0.41 8.8E-06 37.6 6.1 86 5-91 390-487 (866)
146 smart00488 DEXDc2 DEAD-like he 92.7 0.23 4.9E-06 34.8 4.2 40 51-91 210-251 (289)
147 smart00489 DEXDc3 DEAD-like he 92.7 0.23 4.9E-06 34.8 4.2 40 51-91 210-251 (289)
148 PRK10917 ATP-dependent DNA hel 92.7 0.95 2.1E-05 35.4 7.9 79 4-88 470-561 (681)
149 PRK04537 ATP-dependent RNA hel 92.5 1.1 2.3E-05 34.4 7.9 70 4-83 256-332 (572)
150 KOG0950|consensus 92.5 0.15 3.2E-06 41.0 3.3 89 8-102 272-367 (1008)
151 COG1197 Mfd Transcription-repa 92.4 0.83 1.8E-05 37.7 7.3 77 4-88 802-885 (1139)
152 PRK05580 primosome assembly pr 92.2 1.1 2.4E-05 35.1 7.7 70 14-91 438-513 (679)
153 PRK10590 ATP-dependent RNA hel 91.8 1.7 3.6E-05 32.2 8.0 68 5-82 245-319 (456)
154 PLN00206 DEAD-box ATP-dependen 91.8 1.5 3.2E-05 33.1 7.9 69 5-82 367-442 (518)
155 KOG0388|consensus 91.7 0.36 7.9E-06 38.3 4.6 77 9-91 621-710 (1185)
156 PRK04837 ATP-dependent RNA hel 91.6 1.4 3E-05 32.2 7.3 68 5-82 255-329 (423)
157 TIGR00595 priA primosomal prot 91.5 1.3 2.7E-05 33.6 7.2 71 15-93 271-348 (505)
158 PF13086 AAA_11: AAA domain; P 91.5 0.26 5.6E-06 32.2 3.2 38 50-91 168-207 (236)
159 COG1643 HrpA HrpA-like helicas 91.3 0.5 1.1E-05 37.9 5.0 35 52-87 139-173 (845)
160 PRK08074 bifunctional ATP-depe 91.2 0.42 9.1E-06 38.6 4.6 40 51-90 430-469 (928)
161 KOG0344|consensus 91.1 1.6 3.5E-05 33.6 7.3 70 6-84 388-464 (593)
162 TIGR01970 DEAH_box_HrpB ATP-de 90.7 1.7 3.7E-05 34.9 7.5 69 6-81 210-285 (819)
163 PTZ00110 helicase; Provisional 90.7 2.4 5.2E-05 32.3 8.0 69 4-82 376-451 (545)
164 TIGR00614 recQ_fam ATP-depende 90.6 2.5 5.4E-05 31.5 8.0 71 4-84 225-302 (470)
165 KOG1002|consensus 90.6 1.7 3.6E-05 33.4 6.9 84 5-91 231-331 (791)
166 PRK11192 ATP-dependent RNA hel 90.4 2.7 5.8E-05 30.8 7.9 68 5-82 245-319 (434)
167 COG0513 SrmB Superfamily II DN 90.3 2.1 4.5E-05 32.4 7.4 66 6-81 274-346 (513)
168 PF12340 DUF3638: Protein of u 90.2 1.5 3.2E-05 29.9 6.0 87 7-93 72-189 (229)
169 KOG0331|consensus 90.2 1.9 4.2E-05 32.8 7.0 69 4-82 340-415 (519)
170 PF13401 AAA_22: AAA domain; P 90.1 0.32 7E-06 29.1 2.5 23 78-100 89-111 (131)
171 KOG0952|consensus 90.1 0.17 3.7E-06 41.3 1.5 84 4-90 972-1060(1230)
172 KOG0386|consensus 90.0 0.23 4.9E-06 40.4 2.1 80 3-89 443-528 (1157)
173 COG4889 Predicted helicase [Ge 89.7 1.1 2.3E-05 36.8 5.5 83 6-89 207-317 (1518)
174 COG1198 PriA Primosomal protei 89.6 1.8 3.8E-05 34.4 6.6 71 15-93 493-570 (730)
175 PRK11634 ATP-dependent RNA hel 89.4 3 6.4E-05 32.5 7.7 67 6-82 246-319 (629)
176 TIGR03158 cas3_cyano CRISPR-as 89.2 4.9 0.00011 28.9 8.3 69 4-83 271-342 (357)
177 TIGR00631 uvrb excinuclease AB 89.0 2.6 5.6E-05 33.0 7.2 75 4-88 441-522 (655)
178 PRK11057 ATP-dependent DNA hel 88.7 3.1 6.7E-05 32.1 7.4 69 4-82 235-310 (607)
179 PHA02653 RNA helicase NPH-II; 88.6 2.6 5.5E-05 33.2 6.9 70 6-81 396-469 (675)
180 cd05566 PTS_IIB_galactitol PTS 88.5 2.3 5.1E-05 24.0 5.2 51 7-60 2-56 (89)
181 PRK12901 secA preprotein trans 88.4 0.71 1.5E-05 37.9 3.8 74 14-89 222-303 (1112)
182 PRK01297 ATP-dependent RNA hel 87.8 5.7 0.00012 29.6 8.1 50 6-59 336-392 (475)
183 PRK11747 dinG ATP-dependent DN 87.7 1.1 2.4E-05 35.2 4.4 40 51-90 218-260 (697)
184 PRK11664 ATP-dependent RNA hel 87.4 4.4 9.5E-05 32.6 7.6 70 5-81 212-288 (812)
185 TIGR01389 recQ ATP-dependent D 87.2 5.6 0.00012 30.5 7.9 68 5-82 224-298 (591)
186 PF02302 PTS_IIB: PTS system, 87.2 1.6 3.4E-05 24.6 4.0 54 7-63 1-58 (90)
187 cd00079 HELICc Helicase superf 87.0 4.4 9.6E-05 23.8 8.1 72 5-86 28-106 (131)
188 COG4098 comFA Superfamily II D 86.6 6.3 0.00014 29.0 7.4 79 5-91 305-388 (441)
189 PTZ00424 helicase 45; Provisio 86.5 7.8 0.00017 27.8 8.1 68 5-82 267-341 (401)
190 TIGR00604 rad3 DNA repair heli 85.7 1.1 2.4E-05 35.1 3.6 40 51-91 194-235 (705)
191 TIGR01587 cas3_core CRISPR-ass 85.6 6 0.00013 28.0 7.1 54 5-60 222-286 (358)
192 PRK13767 ATP-dependent helicas 85.5 8.3 0.00018 31.3 8.3 72 5-82 284-364 (876)
193 PRK11776 ATP-dependent RNA hel 85.4 6.7 0.00015 29.0 7.4 69 5-83 242-317 (460)
194 PF00271 Helicase_C: Helicase 84.9 4.5 9.7E-05 21.9 5.5 54 26-85 3-60 (78)
195 smart00490 HELICc helicase sup 84.7 4.4 9.4E-05 21.6 6.2 51 29-85 10-64 (82)
196 TIGR01054 rgy reverse gyrase. 84.1 6.6 0.00014 32.9 7.4 75 5-82 326-404 (1171)
197 TIGR01198 pgl 6-phosphoglucono 83.6 5.7 0.00012 26.9 5.9 26 59-84 39-64 (233)
198 PRK09401 reverse gyrase; Revie 83.5 4.7 0.0001 33.8 6.3 70 5-82 328-405 (1176)
199 KOG1123|consensus 83.0 2.5 5.5E-05 32.5 4.3 87 6-97 346-443 (776)
200 cd06353 PBP1_BmpA_Med_like Per 82.9 11 0.00023 25.8 7.1 67 18-84 19-89 (258)
201 TIGR03420 DnaA_homol_Hda DnaA 82.5 11 0.00025 24.6 7.2 86 16-101 23-116 (226)
202 cd01400 6PGL 6PGL: 6-Phosphogl 82.2 5.9 0.00013 26.5 5.5 26 59-84 34-60 (219)
203 PF02608 Bmp: Basic membrane p 81.4 11 0.00023 26.5 6.8 78 7-84 3-93 (306)
204 PRK08084 DNA replication initi 80.4 9.8 0.00021 25.7 6.2 85 18-102 32-124 (235)
205 TIGR03817 DECH_helic helicase/ 80.3 12 0.00025 29.9 7.3 72 5-82 271-353 (742)
206 TIGR01967 DEAH_box_HrpA ATP-de 80.2 13 0.00028 31.6 7.7 69 6-81 280-353 (1283)
207 KOG0333|consensus 80.0 12 0.00027 29.0 6.9 67 5-81 517-590 (673)
208 COG0653 SecA Preprotein transl 79.8 4.1 8.9E-05 32.8 4.6 74 14-89 133-213 (822)
209 COG1199 DinG Rad3-related DNA 79.6 2.4 5.1E-05 32.8 3.3 41 51-91 193-235 (654)
210 cd05563 PTS_IIB_ascorbate PTS_ 79.4 7.9 0.00017 21.6 4.7 49 7-60 1-53 (86)
211 PF05621 TniB: Bacterial TniB 79.3 1.4 3E-05 31.3 1.8 83 14-96 41-165 (302)
212 PF15586 Imm47: Immunity prote 79.1 2.5 5.4E-05 25.8 2.6 34 52-86 44-77 (116)
213 PF01182 Glucosamine_iso: Gluc 78.8 3.5 7.6E-05 27.2 3.5 17 70-86 46-62 (199)
214 PF05872 DUF853: Bacterial pro 78.7 3.9 8.4E-05 30.9 4.0 30 73-102 251-284 (502)
215 KOG0920|consensus 78.3 1.9 4E-05 35.1 2.4 34 53-87 265-298 (924)
216 PRK14701 reverse gyrase; Provi 78.2 5.8 0.00013 34.4 5.3 70 5-82 330-407 (1638)
217 COG1435 Tdk Thymidine kinase [ 77.4 5.8 0.00013 26.6 4.2 72 29-102 31-107 (201)
218 PF00308 Bac_DnaA: Bacterial d 77.1 19 0.00041 24.0 6.9 84 19-102 20-124 (219)
219 cd00133 PTS_IIB PTS_IIB: subun 76.6 9.7 0.00021 20.4 5.6 51 7-61 1-55 (84)
220 PRK13766 Hef nuclease; Provisi 76.6 19 0.0004 28.6 7.4 73 4-86 364-451 (773)
221 PRK09694 helicase Cas3; Provis 76.2 21 0.00046 29.2 7.7 73 4-84 559-646 (878)
222 COG1111 MPH1 ERCC4-like helica 76.1 23 0.0005 27.2 7.4 71 6-85 367-452 (542)
223 PRK11131 ATP-dependent RNA hel 75.7 19 0.00042 30.7 7.5 69 6-81 287-360 (1294)
224 PRK04914 ATP-dependent helicas 75.7 30 0.00066 28.6 8.5 69 5-82 493-570 (956)
225 PHA02558 uvsW UvsW helicase; P 75.4 18 0.00039 27.3 6.8 51 5-59 344-401 (501)
226 PRK05298 excinuclease ABC subu 75.0 34 0.00075 26.9 8.4 74 4-87 445-525 (652)
227 PLN03137 ATP-dependent DNA hel 74.4 25 0.00055 29.8 7.7 66 6-81 681-753 (1195)
228 KOG0922|consensus 74.0 5.1 0.00011 31.4 3.6 34 53-87 141-174 (674)
229 KOG0991|consensus 73.9 2.9 6.4E-05 29.2 2.2 17 75-91 112-128 (333)
230 PRK04195 replication factor C 73.8 36 0.00077 25.6 9.1 77 14-90 22-112 (482)
231 KOG0354|consensus 73.1 24 0.00051 28.4 7.0 72 4-82 412-498 (746)
232 PRK14087 dnaA chromosomal repl 72.6 23 0.00049 26.5 6.7 84 18-101 126-232 (450)
233 COG1203 CRISPR-associated heli 72.4 13 0.00029 29.5 5.7 53 4-60 439-502 (733)
234 PF10996 Beta-Casp: Beta-Casp 72.1 8.1 0.00018 23.0 3.7 57 6-63 21-91 (126)
235 COG1110 Reverse gyrase [DNA re 71.9 11 0.00023 31.5 5.0 74 5-82 335-412 (1187)
236 PHA02544 44 clamp loader, smal 70.7 33 0.00071 23.9 6.9 27 75-101 99-125 (316)
237 PRK06893 DNA replication initi 70.0 30 0.00065 23.2 6.5 28 74-101 89-117 (229)
238 TIGR03871 ABC_peri_MoxJ_2 quin 69.9 12 0.00027 24.4 4.5 42 23-64 27-69 (232)
239 PRK14088 dnaA chromosomal repl 69.8 44 0.00095 24.9 8.1 72 20-91 118-209 (440)
240 PRK14873 primosome assembly pr 69.5 13 0.00027 29.4 4.9 66 16-94 441-507 (665)
241 COG0556 UvrB Helicase subunit 69.5 30 0.00066 27.0 6.7 79 7-98 448-533 (663)
242 COG4825 Uncharacterized membra 69.3 14 0.0003 26.6 4.6 64 4-70 179-245 (395)
243 PF13173 AAA_14: AAA domain 69.1 4.6 0.0001 24.4 2.1 25 76-102 61-85 (128)
244 PF12846 AAA_10: AAA-like doma 69.0 3 6.5E-05 28.3 1.4 28 75-102 219-247 (304)
245 PRK09762 galactosamine-6-phosp 68.6 22 0.00047 24.1 5.5 27 59-85 39-69 (232)
246 PRK11331 5-methylcytosine-spec 68.5 19 0.00041 27.2 5.5 32 58-89 254-285 (459)
247 KOG1132|consensus 68.4 7 0.00015 31.8 3.4 43 47-90 217-261 (945)
248 PRK00411 cdc6 cell division co 67.8 28 0.00062 25.0 6.3 13 77-89 139-151 (394)
249 TIGR00631 uvrb excinuclease AB 66.8 19 0.00041 28.4 5.4 21 7-27 56-79 (655)
250 PRK05642 DNA replication initi 65.4 39 0.00084 22.8 6.2 71 32-102 46-124 (234)
251 PRK08727 hypothetical protein; 65.4 27 0.00058 23.5 5.4 61 31-91 41-108 (233)
252 COG0556 UvrB Helicase subunit 64.4 12 0.00026 29.1 3.8 22 7-28 59-83 (663)
253 TIGR00362 DnaA chromosomal rep 64.1 51 0.0011 24.0 7.0 73 19-91 122-214 (405)
254 cd00949 FBP_aldolase_I_bact Fr 63.9 22 0.00047 25.2 4.7 35 31-65 231-265 (292)
255 cd05568 PTS_IIB_bgl_like PTS_I 63.7 22 0.00049 19.4 4.6 49 6-60 1-54 (85)
256 PF03266 NTPase_1: NTPase; In 63.3 4.6 9.9E-05 26.0 1.3 29 75-103 94-124 (168)
257 PRK00149 dnaA chromosomal repl 63.2 49 0.0011 24.6 6.9 74 18-91 133-226 (450)
258 KOG0990|consensus 62.6 4.5 9.7E-05 29.3 1.3 14 76-89 131-144 (360)
259 cd00009 AAA The AAA+ (ATPases 60.4 31 0.00068 20.0 6.3 15 74-88 82-96 (151)
260 KOG0989|consensus 60.2 4.9 0.00011 28.9 1.1 18 75-92 128-145 (346)
261 TIGR01407 dinG_rel DnaQ family 59.6 18 0.00039 29.3 4.2 38 5-42 292-335 (850)
262 PRK07952 DNA replication prote 58.9 56 0.0012 22.4 6.7 85 18-102 84-189 (244)
263 PF05707 Zot: Zonular occluden 58.7 6.4 0.00014 25.7 1.4 16 76-91 79-94 (193)
264 KOG0341|consensus 58.4 48 0.001 25.1 5.9 68 4-81 420-494 (610)
265 COG4588 AcfC Accessory coloniz 58.0 43 0.00093 22.9 5.2 73 18-92 35-110 (252)
266 KOG0926|consensus 58.0 22 0.00047 29.3 4.3 35 52-87 349-383 (1172)
267 KOG1000|consensus 57.7 53 0.0012 25.6 6.1 37 53-91 287-323 (689)
268 KOG0742|consensus 57.6 69 0.0015 24.5 6.6 84 6-90 354-457 (630)
269 PRK05377 fructose-1,6-bisphosp 57.4 33 0.00073 24.3 4.8 35 31-65 234-268 (296)
270 PRK12358 putative 6-phosphoglu 56.2 37 0.0008 23.0 4.9 13 72-84 55-67 (239)
271 cd00458 SugarP_isomerase Sugar 55.9 42 0.00092 21.4 4.9 12 73-84 47-58 (169)
272 PRK12422 chromosomal replicati 55.8 85 0.0018 23.5 8.5 71 30-100 140-227 (445)
273 PF01637 Arch_ATPase: Archaeal 55.7 9.3 0.0002 24.7 1.9 25 78-102 120-149 (234)
274 KOG3055|consensus 53.7 14 0.00029 25.0 2.3 52 4-59 59-111 (263)
275 TIGR00708 cobA cob(I)alamin ad 53.5 19 0.00041 23.5 3.0 29 74-102 95-125 (173)
276 PRK05986 cob(I)alamin adenolsy 53.2 65 0.0014 21.4 7.2 29 74-102 113-143 (191)
277 PF13177 DNA_pol3_delta2: DNA 52.8 15 0.00032 23.3 2.4 41 51-91 66-117 (162)
278 KOG0953|consensus 52.8 45 0.00097 26.3 5.1 44 16-59 367-416 (700)
279 PRK05298 excinuclease ABC subu 52.6 37 0.0008 26.7 4.9 22 6-27 58-82 (652)
280 KOG2170|consensus 52.1 7.6 0.00016 28.0 1.0 16 74-89 176-191 (344)
281 PF02399 Herpes_ori_bp: Origin 52.0 63 0.0014 26.4 6.0 42 54-98 123-164 (824)
282 COG0466 Lon ATP-dependent Lon 52.0 73 0.0016 25.8 6.3 51 35-91 381-432 (782)
283 PF02463 SMC_N: RecF/RecN/SMC 51.4 9.5 0.00021 25.1 1.4 29 74-102 156-184 (220)
284 COG1744 Med Uncharacterized AB 51.3 45 0.00097 24.1 4.8 71 14-84 51-129 (345)
285 PRK14086 dnaA chromosomal repl 51.3 1.1E+02 0.0024 24.2 7.1 72 31-102 314-404 (617)
286 PRK15483 type III restriction- 51.2 55 0.0012 27.3 5.7 39 52-90 162-215 (986)
287 KOG1133|consensus 50.9 8.8 0.00019 30.6 1.2 37 53-91 324-363 (821)
288 PRK07003 DNA polymerase III su 50.3 10 0.00022 30.7 1.5 23 75-97 118-140 (830)
289 PTZ00285 glucosamine-6-phospha 50.1 71 0.0015 21.8 5.5 15 70-84 59-73 (253)
290 PF13558 SbcCD_C: Putative exo 50.0 12 0.00025 21.4 1.4 29 73-101 60-88 (90)
291 KOG2004|consensus 49.9 32 0.0007 27.9 4.1 50 37-93 471-521 (906)
292 PF14516 AAA_35: AAA-like doma 49.5 14 0.00031 26.3 2.1 35 57-91 107-142 (331)
293 cd00561 CobA_CobO_BtuR ATP:cor 49.5 24 0.00052 22.6 2.9 30 73-102 92-123 (159)
294 PRK12323 DNA polymerase III su 48.8 9.6 0.00021 30.2 1.2 21 75-95 123-143 (700)
295 PRK02362 ski2-like helicase; P 48.8 87 0.0019 24.9 6.4 45 31-81 304-352 (737)
296 PF02572 CobA_CobO_BtuR: ATP:c 48.6 27 0.00058 22.8 3.1 31 72-102 92-124 (172)
297 KOG0925|consensus 48.5 13 0.00028 28.7 1.7 31 57-87 132-170 (699)
298 TIGR00502 nagB glucosamine-6-p 48.5 85 0.0018 21.5 5.7 17 69-85 58-74 (259)
299 PF07999 RHSP: Retrotransposon 48.5 11 0.00024 28.2 1.4 33 53-85 126-168 (439)
300 TIGR00767 rho transcription te 48.2 43 0.00093 25.1 4.4 81 4-88 167-267 (415)
301 PF13872 AAA_34: P-loop contai 48.1 16 0.00035 26.0 2.2 79 6-91 92-187 (303)
302 PF00004 AAA: ATPase family as 48.1 12 0.00027 21.9 1.4 16 77-92 59-74 (132)
303 KOG4284|consensus 48.1 34 0.00073 27.6 3.9 50 26-81 292-345 (980)
304 KOG0330|consensus 48.0 60 0.0013 24.4 5.0 52 24-81 318-373 (476)
305 TIGR00763 lon ATP-dependent pr 48.0 76 0.0017 25.5 6.0 29 59-90 400-428 (775)
306 PRK06835 DNA replication prote 47.9 1E+02 0.0022 22.2 6.9 89 14-102 164-273 (329)
307 PRK14956 DNA polymerase III su 47.5 11 0.00023 28.7 1.2 20 75-94 120-139 (484)
308 PLN03025 replication factor C 47.4 10 0.00022 26.8 1.0 17 75-91 98-114 (319)
309 PRK07414 cob(I)yrinic acid a,c 47.2 28 0.0006 22.9 3.0 29 74-102 113-143 (178)
310 PF13531 SBP_bac_11: Bacterial 47.1 79 0.0017 20.6 6.6 58 14-73 9-69 (230)
311 TIGR02928 orc1/cdc6 family rep 46.7 15 0.00033 26.0 1.9 13 77-89 130-142 (365)
312 KOG0343|consensus 46.4 1.3E+02 0.0029 23.9 6.8 68 6-81 314-388 (758)
313 PRK04296 thymidine kinase; Pro 46.4 23 0.0005 23.0 2.6 29 57-88 62-90 (190)
314 COG0470 HolB ATPase involved i 46.4 26 0.00057 24.1 3.0 16 75-90 108-123 (325)
315 PRK02122 glucosamine-6-phospha 45.5 85 0.0018 24.9 5.8 17 69-85 84-100 (652)
316 PF02606 LpxK: Tetraacyldisacc 45.3 54 0.0012 23.5 4.5 69 8-84 83-154 (326)
317 COG0363 NagB 6-phosphogluconol 45.2 18 0.00038 24.8 1.9 26 59-84 43-71 (238)
318 PRK13695 putative NTPase; Prov 45.1 17 0.00037 23.0 1.8 29 74-102 94-124 (174)
319 PRK07764 DNA polymerase III su 44.8 14 0.0003 30.0 1.5 20 75-94 119-138 (824)
320 TIGR02746 TraC-F-type type-IV 44.5 15 0.00032 29.2 1.7 27 75-101 636-665 (797)
321 TIGR00929 VirB4_CagE type IV s 44.5 14 0.0003 29.2 1.5 27 76-102 629-656 (785)
322 PF06601 Orthopox_F6: Orthopox 44.4 13 0.00029 20.2 1.0 30 62-93 11-40 (72)
323 COG1474 CDC6 Cdc6-related prot 44.4 19 0.00042 26.2 2.1 26 75-101 122-147 (366)
324 TIGR00678 holB DNA polymerase 44.3 13 0.00028 23.9 1.1 18 74-91 94-111 (188)
325 COG0514 RecQ Superfamily II DN 44.3 90 0.002 24.5 5.7 49 8-60 233-288 (590)
326 PRK14958 DNA polymerase III su 44.2 13 0.00028 28.3 1.2 20 75-94 118-137 (509)
327 TIGR02640 gas_vesic_GvpN gas v 44.2 25 0.00053 24.1 2.6 23 78-101 107-129 (262)
328 PRK07994 DNA polymerase III su 43.9 13 0.00028 29.3 1.3 21 75-95 118-138 (647)
329 PF03354 Terminase_1: Phage Te 43.6 31 0.00068 25.9 3.2 27 2-28 51-80 (477)
330 TIGR02881 spore_V_K stage V sp 43.6 24 0.00053 24.0 2.4 13 78-90 107-119 (261)
331 cd01120 RecA-like_NTPases RecA 43.5 23 0.00049 21.3 2.1 18 74-91 83-100 (165)
332 PRK09751 putative ATP-dependen 42.7 2E+02 0.0044 25.4 7.9 21 5-25 244-267 (1490)
333 PLN02360 probable 6-phosphoglu 42.7 1.1E+02 0.0024 21.1 5.7 14 71-84 68-81 (268)
334 TIGR03687 pupylate_cterm ubiqu 42.6 7 0.00015 18.3 -0.2 19 81-99 8-26 (33)
335 PRK14951 DNA polymerase III su 42.2 14 0.00029 29.0 1.1 21 75-95 123-143 (618)
336 PRK13721 conjugal transfer ATP 41.4 18 0.00039 29.3 1.7 25 77-101 660-687 (844)
337 PRK08903 DnaA regulatory inact 41.3 1E+02 0.0022 20.3 7.3 68 17-88 27-102 (227)
338 PF08967 DUF1884: Domain of un 41.3 56 0.0012 18.8 3.2 32 53-85 28-59 (85)
339 PRK14961 DNA polymerase III su 41.3 15 0.00033 26.5 1.2 19 75-93 118-136 (363)
340 PRK06995 flhF flagellar biosyn 41.2 1.1E+02 0.0024 23.4 5.7 43 22-64 305-347 (484)
341 TIGR02621 cas3_GSU0051 CRISPR- 41.0 85 0.0018 25.8 5.3 68 5-85 272-362 (844)
342 COG2812 DnaX DNA polymerase II 40.3 15 0.00033 28.2 1.1 25 75-99 118-142 (515)
343 PRK06620 hypothetical protein; 39.3 1.1E+02 0.0025 20.3 6.1 74 9-88 18-97 (214)
344 PF05970 PIF1: PIF1-like helic 39.1 15 0.00032 26.5 0.9 26 74-100 100-125 (364)
345 COG0410 LivF ABC-type branched 38.9 51 0.0011 22.7 3.4 30 11-40 167-197 (237)
346 KOG0335|consensus 38.6 1.3E+02 0.0028 23.1 5.7 60 14-83 349-412 (482)
347 TIGR02562 cas3_yersinia CRISPR 37.7 24 0.00052 29.6 1.9 36 53-88 563-605 (1110)
348 KOG0340|consensus 37.5 1.4E+02 0.0031 22.3 5.6 50 26-81 274-327 (442)
349 KOG0923|consensus 37.1 35 0.00075 27.5 2.6 33 54-87 357-389 (902)
350 PTZ00112 origin recognition co 36.7 54 0.0012 27.6 3.6 26 75-101 868-893 (1164)
351 PRK01172 ski2-like helicase; P 36.6 2.1E+02 0.0046 22.5 8.0 29 32-60 287-319 (674)
352 PRK06526 transposase; Provisio 36.4 25 0.00055 24.2 1.6 40 50-89 124-172 (254)
353 PF01976 DUF116: Protein of un 36.4 1.2E+02 0.0025 19.5 4.8 45 21-65 77-121 (158)
354 TIGR02768 TraA_Ti Ti-type conj 36.3 1.3E+02 0.0028 24.2 5.7 16 74-89 437-452 (744)
355 cd01128 rho_factor Transcripti 35.9 1.1E+02 0.0024 21.1 4.7 44 4-49 15-68 (249)
356 PF10609 ParA: ParA/MinD ATPas 35.7 87 0.0019 17.8 4.2 34 8-41 29-64 (81)
357 cd05567 PTS_IIB_mannitol PTS_I 35.6 83 0.0018 17.6 4.8 44 7-60 2-53 (87)
358 TIGR01256 modA molybdenum ABC 35.4 1.2E+02 0.0027 19.5 7.4 54 17-71 7-62 (216)
359 KOG3347|consensus 35.2 23 0.0005 23.0 1.2 13 50-62 5-18 (176)
360 COG1638 DctP TRAP-type C4-dica 34.8 79 0.0017 22.7 4.0 71 30-102 60-135 (332)
361 KOG0933|consensus 34.5 25 0.00055 29.3 1.5 66 31-103 1066-1131(1174)
362 PRK14949 DNA polymerase III su 33.6 24 0.00051 29.2 1.3 19 75-93 118-136 (944)
363 PTZ00209 retrotransposon hot s 33.5 21 0.00046 28.3 1.0 11 52-62 173-183 (693)
364 PRK10310 PTS system galactitol 33.3 99 0.0021 17.7 5.9 48 6-60 3-58 (94)
365 TIGR00376 DNA helicase, putati 33.3 45 0.00097 26.2 2.7 35 50-91 342-376 (637)
366 COG2077 Tpx Peroxiredoxin [Pos 33.2 1.4E+02 0.003 19.3 7.2 92 5-96 45-151 (158)
367 COG2255 RuvB Holliday junction 33.0 48 0.001 23.9 2.6 27 59-89 90-116 (332)
368 PRK14566 triosephosphate isome 32.8 1E+02 0.0022 21.5 4.1 46 14-59 190-242 (260)
369 PRK13889 conjugal transfer rel 32.7 66 0.0014 26.9 3.6 18 73-90 430-447 (988)
370 TIGR03744 traC_PFL_4706 conjug 32.5 31 0.00067 28.2 1.8 27 76-102 733-760 (893)
371 cd07382 MPP_DR1281 Deinococcus 32.3 1.7E+02 0.0037 20.2 5.2 41 20-60 132-174 (255)
372 PRK07399 DNA polymerase III su 32.2 96 0.0021 22.1 4.0 17 75-91 123-139 (314)
373 PRK07276 DNA polymerase III su 32.1 87 0.0019 22.2 3.8 41 52-92 71-120 (290)
374 COG1419 FlhF Flagellar GTP-bin 32.1 60 0.0013 24.3 3.0 41 22-62 252-292 (407)
375 KOG1643|consensus 32.1 69 0.0015 21.9 3.1 43 12-54 176-224 (247)
376 cd03239 ABC_SMC_head The struc 32.0 29 0.00063 22.4 1.3 28 74-101 114-141 (178)
377 CHL00129 rpl1 ribosomal protei 31.9 59 0.0013 22.2 2.8 53 5-68 71-125 (229)
378 PF00731 AIRC: AIR carboxylase 31.7 43 0.00092 21.4 2.0 57 6-62 1-65 (150)
379 COG1196 Smc Chromosome segrega 31.6 30 0.00066 29.0 1.6 54 49-102 1046-1114(1163)
380 PRK12723 flagellar biosynthesi 31.6 2.2E+02 0.0047 21.1 7.9 57 29-89 205-267 (388)
381 PF05496 RuvB_N: Holliday junc 31.4 45 0.00098 22.9 2.2 26 60-89 89-114 (233)
382 COG2842 Uncharacterized ATPase 31.3 22 0.00047 25.4 0.7 21 74-94 163-183 (297)
383 COG1618 Predicted nucleotide k 31.2 34 0.00073 22.5 1.5 29 75-103 99-129 (179)
384 KOG1015|consensus 31.1 2.3E+02 0.0049 24.4 6.2 15 75-89 820-834 (1567)
385 PRK14960 DNA polymerase III su 31.1 28 0.00061 27.8 1.3 20 75-94 117-136 (702)
386 TIGR01615 A_thal_3542 uncharac 30.8 39 0.00085 21.1 1.7 18 51-68 76-93 (131)
387 TIGR01631 Trypano_RHS trypanos 30.5 25 0.00054 28.3 0.9 11 52-62 280-290 (760)
388 PRK14969 DNA polymerase III su 30.5 26 0.00056 26.8 1.0 20 75-94 118-137 (527)
389 smart00382 AAA ATPases associa 30.5 28 0.00061 19.9 1.0 19 77-95 79-97 (148)
390 KOG1177|consensus 30.2 2.3E+02 0.0051 22.1 5.8 46 37-82 308-357 (596)
391 PRK11448 hsdR type I restricti 30.1 3.6E+02 0.0077 23.2 7.3 54 6-59 699-763 (1123)
392 PRK09112 DNA polymerase III su 30.0 31 0.00067 25.0 1.3 18 75-92 140-157 (351)
393 PRK14964 DNA polymerase III su 29.9 30 0.00065 26.4 1.3 21 74-94 114-134 (491)
394 PRK14952 DNA polymerase III su 29.9 26 0.00057 27.3 0.9 21 74-94 116-136 (584)
395 PHA00350 putative assembly pro 29.9 28 0.0006 25.9 1.0 15 77-91 82-96 (399)
396 COG1541 PaaK Coenzyme F390 syn 29.4 1.3E+02 0.0029 22.7 4.4 28 41-68 170-198 (438)
397 PRK09376 rho transcription ter 29.4 2.5E+02 0.0054 21.2 6.4 82 4-89 168-269 (416)
398 PRK10787 DNA-binding ATP-depen 29.3 53 0.0012 26.6 2.6 31 58-91 401-431 (784)
399 TIGR03783 Bac_Flav_CT_G Bacter 29.1 38 0.00083 27.5 1.8 26 77-102 666-692 (829)
400 KOG0350|consensus 29.0 2.2E+02 0.0047 22.4 5.5 71 5-81 429-506 (620)
401 cd02071 MM_CoA_mut_B12_BD meth 29.0 1.3E+02 0.0029 17.9 4.5 54 5-58 50-108 (122)
402 TIGR01169 rplA_bact ribosomal 28.7 69 0.0015 21.8 2.7 32 36-67 92-123 (227)
403 COG2109 BtuR ATP:corrinoid ade 28.5 82 0.0018 21.1 2.9 28 75-102 121-150 (198)
404 COG1370 Prefoldin, molecular c 28.4 24 0.00053 22.6 0.5 17 76-92 114-130 (155)
405 CHL00181 cbbX CbbX; Provisiona 28.0 53 0.0012 23.0 2.2 13 78-90 124-136 (287)
406 cd02812 PcrB_like PcrB_like pr 27.7 1.5E+02 0.0034 20.1 4.3 25 35-59 179-205 (219)
407 PRK14953 DNA polymerase III su 27.5 34 0.00075 25.9 1.2 20 74-93 117-136 (486)
408 PRK04132 replication factor C 27.5 66 0.0014 26.4 2.8 15 76-90 630-644 (846)
409 KOG2228|consensus 27.4 1.2E+02 0.0025 22.6 3.7 31 62-92 123-153 (408)
410 PRK05563 DNA polymerase III su 27.4 31 0.00068 26.6 1.0 21 74-94 117-137 (559)
411 PF07728 AAA_5: AAA domain (dy 27.4 27 0.00059 21.0 0.6 14 76-89 65-78 (139)
412 cd01542 PBP1_TreR_like Ligand- 27.1 1.8E+02 0.004 18.9 6.2 47 14-60 13-63 (259)
413 COG1484 DnaC DNA replication p 26.8 2.2E+02 0.0047 19.6 6.2 59 30-88 104-179 (254)
414 PRK00440 rfc replication facto 26.4 78 0.0017 21.8 2.8 16 75-90 101-116 (319)
415 PF13072 DUF3936: Protein of u 26.3 82 0.0018 15.3 2.0 27 3-29 4-30 (38)
416 PRK14957 DNA polymerase III su 26.0 38 0.00083 26.2 1.2 20 74-93 117-136 (546)
417 PF13479 AAA_24: AAA domain 26.0 71 0.0015 21.1 2.4 41 51-91 43-83 (213)
418 PRK14962 DNA polymerase III su 25.9 47 0.001 25.1 1.7 17 74-90 115-131 (472)
419 PF12974 Phosphonate-bd: ABC t 25.9 2E+02 0.0044 19.0 6.5 55 14-69 12-67 (243)
420 PF13242 Hydrolase_like: HAD-h 25.9 52 0.0011 17.7 1.5 7 34-40 24-30 (75)
421 COG1199 DinG Rad3-related DNA 25.7 3.3E+02 0.0071 21.3 6.3 70 7-83 481-555 (654)
422 PRK14722 flhF flagellar biosyn 25.6 1.3E+02 0.0028 22.2 3.8 10 54-63 218-227 (374)
423 PRK14963 DNA polymerase III su 25.6 42 0.00091 25.6 1.4 17 74-90 114-130 (504)
424 PRK07413 hypothetical protein; 25.5 90 0.002 23.1 3.0 29 74-102 123-153 (382)
425 PF05127 Helicase_RecD: Helica 25.4 34 0.00073 22.4 0.7 13 76-88 90-102 (177)
426 PF13604 AAA_30: AAA domain; P 25.4 2E+02 0.0043 18.7 8.2 18 74-91 91-108 (196)
427 PRK13826 Dtr system oriT relax 25.3 85 0.0018 26.6 3.1 17 73-89 465-481 (1102)
428 PRK14959 DNA polymerase III su 25.3 45 0.00098 26.3 1.5 17 75-91 118-134 (624)
429 PF04720 DUF506: Protein of un 25.3 57 0.0012 22.2 1.8 18 51-68 165-182 (218)
430 KOG2824|consensus 25.3 36 0.00077 24.1 0.9 24 80-103 162-185 (281)
431 PRK11564 stationary phase indu 25.2 1.7E+02 0.0037 21.5 4.5 50 5-59 338-392 (426)
432 PF12774 AAA_6: Hydrolytic ATP 25.2 2.3E+02 0.0049 19.3 5.4 75 6-89 9-97 (231)
433 PRK14965 DNA polymerase III su 25.2 41 0.00088 26.1 1.2 20 74-93 117-136 (576)
434 PRK14955 DNA polymerase III su 25.1 47 0.001 24.3 1.5 18 74-91 125-142 (397)
435 PRK14970 DNA polymerase III su 25.0 49 0.0011 23.7 1.6 18 74-91 106-123 (367)
436 PRK13898 type IV secretion sys 25.0 40 0.00087 27.1 1.2 28 75-102 641-669 (800)
437 TIGR00635 ruvB Holliday juncti 24.9 80 0.0017 21.8 2.6 16 75-90 80-95 (305)
438 PRK10536 hypothetical protein; 24.8 38 0.00082 23.7 0.9 12 78-89 178-189 (262)
439 PRK08691 DNA polymerase III su 24.7 42 0.00091 26.9 1.2 19 75-93 118-136 (709)
440 PRK11260 cystine transporter s 24.4 2.3E+02 0.0049 19.0 5.4 45 21-67 70-119 (266)
441 PLN00020 ribulose bisphosphate 24.3 42 0.0009 25.1 1.1 34 57-90 189-226 (413)
442 PF10995 DUF2819: Protein of u 24.2 2.6E+02 0.0057 20.2 5.0 56 14-69 122-180 (316)
443 PF06068 TIP49: TIP49 C-termin 24.1 51 0.0011 24.5 1.5 13 79-92 281-293 (398)
444 PRK12898 secA preprotein trans 24.0 3.3E+02 0.0071 21.9 5.9 48 8-59 476-528 (656)
445 PRK08451 DNA polymerase III su 23.9 40 0.00087 26.0 1.0 19 74-92 115-133 (535)
446 PF05639 Pup: Pup-like protein 23.8 16 0.00035 20.2 -0.8 18 81-98 44-61 (69)
447 PF07302 AroM: AroM protein; 23.7 2.5E+02 0.0053 19.2 5.2 21 7-27 127-147 (221)
448 PRK07940 DNA polymerase III su 23.7 48 0.001 24.4 1.3 40 52-91 84-132 (394)
449 PRK09200 preprotein translocas 23.6 3.3E+02 0.0072 22.4 6.0 51 5-59 428-483 (790)
450 KOG0551|consensus 23.4 98 0.0021 22.8 2.8 46 57-102 299-352 (390)
451 CHL00200 trpA tryptophan synth 23.2 2E+02 0.0043 20.0 4.2 52 14-68 186-239 (263)
452 PRK14950 DNA polymerase III su 23.2 54 0.0012 25.4 1.6 19 74-92 118-136 (585)
453 KOG1805|consensus 23.2 65 0.0014 27.0 2.0 37 50-90 774-810 (1100)
454 TIGR01768 GGGP-family geranylg 23.0 1.9E+02 0.0041 19.7 4.0 23 37-59 185-209 (223)
455 KOG0334|consensus 22.9 2.7E+02 0.0058 23.6 5.3 72 7-85 615-690 (997)
456 TIGR03015 pepcterm_ATPase puta 22.8 40 0.00087 22.7 0.8 15 76-90 123-137 (269)
457 TIGR01819 F420_cofD LPPG:FO 2- 22.7 78 0.0017 22.6 2.2 14 76-89 254-267 (297)
458 PRK13853 type IV secretion sys 22.7 55 0.0012 26.3 1.6 27 76-102 627-654 (789)
459 PRK06645 DNA polymerase III su 22.4 49 0.0011 25.3 1.2 19 74-92 126-144 (507)
460 TIGR02397 dnaX_nterm DNA polym 22.4 58 0.0013 22.9 1.5 18 74-91 115-132 (355)
461 TIGR01425 SRP54_euk signal rec 22.3 3.5E+02 0.0076 20.4 6.2 13 52-64 182-195 (429)
462 PF12780 AAA_8: P-loop contain 22.3 2.8E+02 0.0061 19.3 5.2 95 6-103 7-115 (268)
463 PHA00012 I assembly protein 22.3 44 0.00095 24.5 0.9 17 75-91 80-96 (361)
464 KOG1969|consensus 21.9 1E+02 0.0022 25.3 2.8 27 75-102 386-412 (877)
465 KOG0924|consensus 21.9 93 0.002 25.4 2.6 33 54-88 447-480 (1042)
466 PRK04169 geranylgeranylglycery 21.8 2.4E+02 0.0051 19.4 4.3 31 29-59 182-214 (232)
467 PRK08116 hypothetical protein; 21.7 2.8E+02 0.0061 19.1 7.1 37 51-87 141-189 (268)
468 PRK08181 transposase; Validate 21.6 1.4E+02 0.003 20.8 3.2 53 50-102 132-194 (269)
469 COG1643 HrpA HrpA-like helicas 21.2 4.9E+02 0.011 21.7 6.7 68 7-81 261-336 (845)
470 TIGR01454 AHBA_synth_RP 3-amin 21.1 2E+02 0.0044 18.4 3.8 7 34-40 151-157 (205)
471 PRK07471 DNA polymerase III su 21.1 52 0.0011 24.0 1.1 16 75-90 140-155 (365)
472 PRK13342 recombination factor 20.8 54 0.0012 24.1 1.1 15 76-90 92-106 (413)
473 PRK14723 flhF flagellar biosyn 20.7 2.9E+02 0.0064 22.6 5.1 10 54-63 266-275 (767)
474 PF04009 DUF356: Protein of un 20.4 2.1E+02 0.0046 17.2 3.5 52 10-62 33-90 (107)
475 PRK00080 ruvB Holliday junctio 20.4 63 0.0014 22.8 1.4 16 74-89 100-115 (328)
476 CHL00095 clpC Clp protease ATP 20.3 87 0.0019 25.4 2.3 23 61-88 601-623 (821)
No 1
>KOG0331|consensus
Probab=99.97 E-value=3e-30 Score=187.77 Aligned_cols=101 Identities=35% Similarity=0.571 Sum_probs=98.3
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
.++|++|||+| ||.||.+++.++++.+++++.++|||.+...|.+.+.++.+|+||||||+.++++.+.+++++++|
T Consensus 163 ~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 163 GDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 35899999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
+|+||||+||++||+++++.|++.
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~ 266 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQ 266 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHh
Confidence 999999999999999999999975
No 2
>KOG0339|consensus
Probab=99.96 E-value=9.2e-29 Score=178.67 Aligned_cols=102 Identities=35% Similarity=0.505 Sum_probs=98.9
Q ss_pred CCCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 2 GFANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 2 ~~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
+.++|.++|++| ||.||+.++++|++.++++++++|||.+.++|.+.|+.++.|+|+|||||+++++-+..++.++.
T Consensus 293 ~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS 372 (731)
T KOG0339|consen 293 PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVS 372 (731)
T ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeee
Confidence 357999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 79 YVVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 79 ~lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
|||+||||+|+++||++++++|...
T Consensus 373 ~LV~DEadrmfdmGfe~qVrSI~~h 397 (731)
T KOG0339|consen 373 YLVLDEADRMFDMGFEPQVRSIKQH 397 (731)
T ss_pred EEEEechhhhhccccHHHHHHHHhh
Confidence 9999999999999999999999864
No 3
>KOG0330|consensus
Probab=99.95 E-value=6.9e-28 Score=169.43 Aligned_cols=100 Identities=32% Similarity=0.456 Sum_probs=95.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHH-hCCCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV-EMELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~-~~~~~l~~l~~ 79 (104)
..|+|+||+| ||.||.++++.++...++++.+++||.+...|...+.+.|||+|+|||||+++++ .+.++++.++|
T Consensus 128 ~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~ 207 (476)
T KOG0330|consen 128 KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKF 207 (476)
T ss_pred CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHH
Confidence 3589999999 9999999999999999999999999999999999999999999999999999998 68899999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
||+||||++|++.|.+.+..|++.
T Consensus 208 LVlDEADrlLd~dF~~~ld~ILk~ 231 (476)
T KOG0330|consen 208 LVLDEADRLLDMDFEEELDYILKV 231 (476)
T ss_pred HhhchHHhhhhhhhHHHHHHHHHh
Confidence 999999999999999999999864
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.9e-27 Score=172.16 Aligned_cols=96 Identities=36% Similarity=0.547 Sum_probs=93.5
Q ss_pred EEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEc
Q psy18035 8 YLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFD 83 (104)
Q Consensus 8 ~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlD 83 (104)
|||++| ||.||+++++.++++. ++++..++||.+...|...+..++||+||||||++++++.+.+++++++++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 999999 9999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCcHHHHHhhhhc
Q psy18035 84 EADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 84 EaD~ll~~gf~~~i~~i~~~ 103 (104)
|||+||++||.+++..|++.
T Consensus 182 EADrmLd~Gf~~~i~~I~~~ 201 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKA 201 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHh
Confidence 99999999999999999875
No 5
>KOG0338|consensus
Probab=99.94 E-value=6.9e-27 Score=168.93 Aligned_cols=101 Identities=35% Similarity=0.528 Sum_probs=96.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~-~~~~l~~l~~ 79 (104)
...++|||+| ||.|++++.++++.++.+.+.+++||.+.+.|...|+++|||+|+||||+.+++++ ..++++++..
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEV 330 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEV 330 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeE
Confidence 4579999999 99999999999999999999999999999999999999999999999999999876 5799999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhhcC
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCDTS 104 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~~~ 104 (104)
+|+||||+||+.||.++++.|+..|
T Consensus 331 LvlDEADRMLeegFademnEii~lc 355 (691)
T KOG0338|consen 331 LVLDEADRMLEEGFADEMNEIIRLC 355 (691)
T ss_pred EEechHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998765
No 6
>KOG0335|consensus
Probab=99.94 E-value=9.4e-27 Score=167.72 Aligned_cols=100 Identities=27% Similarity=0.527 Sum_probs=96.7
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.+|+++|++| ||.|+|++++++...+++++...|||.+...+.+.+.+++||+|+|||||.++++.+.+.++++++|
T Consensus 151 ~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~ 230 (482)
T KOG0335|consen 151 VYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFL 230 (482)
T ss_pred CCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEE
Confidence 3699999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEchhhhhhh-cCcHHHHHhhhhc
Q psy18035 81 VFDEADRLFE-MGFDVEQQSPCDT 103 (104)
Q Consensus 81 VlDEaD~ll~-~gf~~~i~~i~~~ 103 (104)
||||||+|+| +||+++|++|+..
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~ 254 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQ 254 (482)
T ss_pred EecchHHhhhhccccccHHHHhcc
Confidence 9999999999 8999999999864
No 7
>KOG0348|consensus
Probab=99.93 E-value=1.9e-26 Score=167.31 Aligned_cols=101 Identities=29% Similarity=0.494 Sum_probs=93.3
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhcc-CCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCCCCCCc
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSI 77 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~-~~~~l~~l 77 (104)
..||+|||++| ||.|+|++++++.+. ..+-...+.||...+.+..+|++|++|+|||||||.+++++ ..+.++.+
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 46899999999 999999999999865 45777888999999999999999999999999999998876 67889999
Q ss_pred cEEEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 78 QYVVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 78 ~~lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
+|+|+||||++++.||+++|..|+++
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~ 314 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKA 314 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHH
Confidence 99999999999999999999999975
No 8
>KOG0342|consensus
Probab=99.92 E-value=3.4e-25 Score=159.14 Aligned_cols=102 Identities=27% Similarity=0.478 Sum_probs=95.1
Q ss_pred CCCCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCCCCCC
Q psy18035 2 GFANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSS 76 (104)
Q Consensus 2 ~~~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~-~~~~l~~ 76 (104)
+.++..++|++| ||.|++.+++++.++. ++.+..+.||++...+.+++.++++|+|+|||||.+++++ +.+-+++
T Consensus 151 ~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~ 230 (543)
T KOG0342|consen 151 PRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRN 230 (543)
T ss_pred CCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhc
Confidence 457889999999 9999999999999998 9999999999999999999999999999999999999987 4567899
Q ss_pred ccEEEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 77 IQYVVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 77 l~~lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
+++||+||||++++.||++++++|++.
T Consensus 231 ~k~lvlDEADrlLd~GF~~di~~Ii~~ 257 (543)
T KOG0342|consen 231 LKCLVLDEADRLLDIGFEEDVEQIIKI 257 (543)
T ss_pred cceeEeecchhhhhcccHHHHHHHHHh
Confidence 999999999999999999999999874
No 9
>KOG0345|consensus
Probab=99.91 E-value=2e-24 Score=154.84 Aligned_cols=97 Identities=31% Similarity=0.579 Sum_probs=89.2
Q ss_pred eeEEEehh---HHHHHHHHHHHHhcc-CCceEEEEEcCccHHHHHHHhcC-CCcEEEeCcHHHHHHHHhC--CCCCCCcc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEM--ELKLSSIQ 78 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~-~~~~~~~~~g~~~~~~~~~~l~~-~~~IlV~TP~~l~~l~~~~--~~~l~~l~ 78 (104)
.-|+|++| ||.||++++..+..+ .++++.+++||.+.+++.+..++ +|+|+|||||||.++++.. .+++++++
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 57999999 999999999999887 78999999999999999888765 5999999999999999874 45677999
Q ss_pred EEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 79 YVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 79 ~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
+||+||||+++|+||+.+++.|++
T Consensus 160 ~LVLDEADrLldmgFe~~~n~ILs 183 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTILS 183 (567)
T ss_pred eEEecchHhHhcccHHHHHHHHHH
Confidence 999999999999999999999986
No 10
>KOG0341|consensus
Probab=99.91 E-value=3e-25 Score=156.90 Aligned_cols=100 Identities=28% Similarity=0.498 Sum_probs=94.1
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhc------cCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCC
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGK------FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK 73 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~------~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~ 73 (104)
..||.+||+|| ||.|++..+..+.. ++.+++.+..||.+..+|....+.|.||+|+|||||.+++.++.++
T Consensus 244 ~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~s 323 (610)
T KOG0341|consen 244 GEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMS 323 (610)
T ss_pred CCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhcc
Confidence 46899999999 99999999998854 3568999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
++-++||.+||||+|+|+||+++++.|.+
T Consensus 324 Ld~CRyL~lDEADRmiDmGFEddir~iF~ 352 (610)
T KOG0341|consen 324 LDACRYLTLDEADRMIDMGFEDDIRTIFS 352 (610)
T ss_pred HHHHHHhhhhhHHHHhhccchhhHHHHHH
Confidence 99999999999999999999999999875
No 11
>KOG0347|consensus
Probab=99.91 E-value=5.4e-24 Score=155.08 Aligned_cols=98 Identities=30% Similarity=0.451 Sum_probs=92.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCC---CCCCcc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL---KLSSIQ 78 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~---~l~~l~ 78 (104)
.|.+||++| ||.||.+.+..+++++++++..++||.....|.+.|...|||+|+|||||+.+++.+.. ++++++
T Consensus 263 k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vk 342 (731)
T KOG0347|consen 263 KPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVK 342 (731)
T ss_pred cceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhce
Confidence 345999999 99999999999999999999999999999999999999999999999999999998765 589999
Q ss_pred EEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 79 YVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 79 ~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
+||+||||+|++.|+.+++.+|++
T Consensus 343 cLVlDEaDRmvekghF~Els~lL~ 366 (731)
T KOG0347|consen 343 CLVLDEADRMVEKGHFEELSKLLK 366 (731)
T ss_pred EEEEccHHHHhhhccHHHHHHHHH
Confidence 999999999999999999998875
No 12
>KOG0336|consensus
Probab=99.91 E-value=4.4e-24 Score=151.79 Aligned_cols=98 Identities=32% Similarity=0.562 Sum_probs=93.9
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
+++|.+|+++| ||.|+.-+++++. +-+++..++|||.+..+|++.++.+.+|+++|||||.++...+.++++.+.|
T Consensus 292 r~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTY 370 (629)
T KOG0336|consen 292 RNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITY 370 (629)
T ss_pred cCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEE
Confidence 57899999999 9999999999886 5689999999999999999999999999999999999999999999999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhh
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
+|+||||+|||+||+++|.+|+
T Consensus 371 lVlDEADrMLDMgFEpqIrkil 392 (629)
T KOG0336|consen 371 LVLDEADRMLDMGFEPQIRKIL 392 (629)
T ss_pred EEecchhhhhcccccHHHHHHh
Confidence 9999999999999999999987
No 13
>KOG0333|consensus
Probab=99.90 E-value=3.4e-24 Score=155.39 Aligned_cols=100 Identities=32% Similarity=0.484 Sum_probs=96.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.||+|+||+| ||+||+.+..++++..++++..++||.+.++|--.++.+|+|+|||||||.+-+++..+-++.+.++
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyv 400 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYV 400 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceE
Confidence 5899999999 9999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhhc
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
|+||||+|+|+||+++++.|++.
T Consensus 401 vldeadrmiDmgfE~dv~~iL~~ 423 (673)
T KOG0333|consen 401 VLDEADRMIDMGFEPDVQKILEQ 423 (673)
T ss_pred eccchhhhhcccccHHHHHHHHh
Confidence 99999999999999999999874
No 14
>KOG0343|consensus
Probab=99.90 E-value=1.7e-23 Score=152.61 Aligned_cols=101 Identities=30% Similarity=0.549 Sum_probs=91.9
Q ss_pred CCCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCCCCCCc
Q psy18035 2 GFANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSI 77 (104)
Q Consensus 2 ~~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~-~~~~l~~l 77 (104)
+..|.-|||+.| ||.|+++++.+++++..+++.++.||.+...+..++. +.+|+|||||||+.++.. ..++.+++
T Consensus 138 ~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 138 PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 456789999999 9999999999999999999999999999887766654 689999999999988865 57889999
Q ss_pred cEEEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 78 QYVVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 78 ~~lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
++||+||||+|||+||...++.|+++
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~ 242 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIEN 242 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHh
Confidence 99999999999999999999999874
No 15
>PTZ00110 helicase; Provisional
Probab=99.90 E-value=2.8e-23 Score=154.07 Aligned_cols=100 Identities=26% Similarity=0.464 Sum_probs=95.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.+|++|||+| ||.|+++.+++++...++++.+++||.+...+...+.++++|+|+|||+|.+++.++..++++++++
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 4799999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhhc
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
|+||||+|++.||++++..|++.
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~ 304 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQ 304 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHh
Confidence 99999999999999999999763
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=4.9e-23 Score=148.57 Aligned_cols=99 Identities=31% Similarity=0.456 Sum_probs=94.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++|++|||+| ||.|+++.++.+.+..++++..++||.+...+...+.+++||+||||+++.+++.++.+++++++++
T Consensus 82 ~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~l 161 (423)
T PRK04837 82 NQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVV 161 (423)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEE
Confidence 4689999999 9999999999999999999999999999999988898899999999999999999999999999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||.|++.||..++..|++
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~ 183 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFR 183 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHH
Confidence 9999999999999999988875
No 17
>KOG0328|consensus
Probab=99.90 E-value=2.1e-23 Score=142.53 Aligned_cols=101 Identities=25% Similarity=0.472 Sum_probs=96.9
Q ss_pred CCCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 2 GFANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 2 ~~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
+.+..||+||+| ||.|+.+++..++.++++.|....||.+..++++.+.-|.|++.|||||+.++++.+.+..+.++
T Consensus 92 ~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vk 171 (400)
T KOG0328|consen 92 SVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVK 171 (400)
T ss_pred ccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcccccccee
Confidence 345689999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 79 YVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 79 ~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
++|+||||.||+.||.+++..|.+
T Consensus 172 mlVLDEaDemL~kgfk~Qiydiyr 195 (400)
T KOG0328|consen 172 MLVLDEADEMLNKGFKEQIYDIYR 195 (400)
T ss_pred EEEeccHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999998875
No 18
>KOG0326|consensus
Probab=99.89 E-value=2.7e-23 Score=143.97 Aligned_cols=99 Identities=30% Similarity=0.442 Sum_probs=95.4
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
+..|++|++| ||.|+.++++++++++++++...+||++...++-++.+..|++||||||++++.+++.-.++++..+
T Consensus 152 ~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~l 231 (459)
T KOG0326|consen 152 NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVIL 231 (459)
T ss_pred cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEE
Confidence 4679999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||+||+..|.+-++.+++
T Consensus 232 V~DEADKlLs~~F~~~~e~li~ 253 (459)
T KOG0326|consen 232 VMDEADKLLSVDFQPIVEKLIS 253 (459)
T ss_pred EechhhhhhchhhhhHHHHHHH
Confidence 9999999999999999998875
No 19
>KOG0350|consensus
Probab=99.89 E-value=6.8e-23 Score=147.92 Aligned_cols=100 Identities=28% Similarity=0.490 Sum_probs=90.8
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-C----cEEEeCcHHHHHHHH-hCCCC
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-P----DIVVATPGRFLHIVV-EMELK 73 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~----~IlV~TP~~l~~l~~-~~~~~ 73 (104)
.+..||+|++| |+.|++.+|+++....++.++.+.|..+.+.+.+.|.+. + ||+|+|||||.+++. .+.++
T Consensus 213 v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~ 292 (620)
T KOG0350|consen 213 VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFD 292 (620)
T ss_pred ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcc
Confidence 45689999999 999999999999999999999999999988888888764 4 999999999999998 47899
Q ss_pred CCCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
+++++|+|+||||+|++..|++|+..+..
T Consensus 293 Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~ 321 (620)
T KOG0350|consen 293 LKHLRFLVIDEADRLLDQSFQEWLDTVMS 321 (620)
T ss_pred hhhceEEEechHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877653
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.88 E-value=2.4e-22 Score=148.38 Aligned_cols=100 Identities=26% Similarity=0.471 Sum_probs=94.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++|++||++| ||.|+++.++.+.+..++++..++||.....+...+..+++|+|+|||++.+++..+.+.+++++++
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 5789999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhhc
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
|+||||+|++.||.+++..|+..
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~ 297 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQA 297 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHh
Confidence 99999999999999999888753
No 21
>KOG0334|consensus
Probab=99.87 E-value=2.3e-22 Score=153.78 Aligned_cols=100 Identities=32% Similarity=0.574 Sum_probs=92.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCC---CCCc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK---LSSI 77 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~---l~~l 77 (104)
.||.|+|++| ||.||++.+++|.+.+++++++.|||+...+++..+++++.|+|+||||.++++-.+.-. +..+
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~ 516 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRV 516 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccccccc
Confidence 4899999999 999999999999999999999999999999999999999999999999999999766544 5555
Q ss_pred cEEEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 78 QYVVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 78 ~~lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
.++|+||||+|+++||+|++..|++.
T Consensus 517 t~lv~deaDrmfdmgfePq~~~Ii~n 542 (997)
T KOG0334|consen 517 TYLVLDEADRMFDMGFEPQITRILQN 542 (997)
T ss_pred ceeeechhhhhheeccCcccchHHhh
Confidence 59999999999999999999988864
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.87 E-value=1.5e-21 Score=142.18 Aligned_cols=100 Identities=31% Similarity=0.540 Sum_probs=93.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
..+++||++| ||.|+++.++.+.++.++++..++||.+...+...+..+++|+|+||+++.+++..+.+.+++++++
T Consensus 74 ~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~l 153 (456)
T PRK10590 74 RPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153 (456)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEE
Confidence 3468999999 9999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhhc
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
|+||||.|++.+|..++..+++.
T Consensus 154 ViDEah~ll~~~~~~~i~~il~~ 176 (456)
T PRK10590 154 VLDEADRMLDMGFIHDIRRVLAK 176 (456)
T ss_pred EeecHHHHhccccHHHHHHHHHh
Confidence 99999999999999999888753
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.87 E-value=1.7e-21 Score=146.44 Aligned_cols=100 Identities=30% Similarity=0.466 Sum_probs=93.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
.+|++|||+| ||.|+++.++++.++. ++++..++||.+...+...+..+++|+|+||+++.+++..+.++++++++
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~ 152 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSG 152 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 5689999999 9999999999998775 79999999999999999999999999999999999999999999999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
+|+||||.|+++||.+++..|++.
T Consensus 153 lVlDEAd~ml~~gf~~di~~Il~~ 176 (629)
T PRK11634 153 LVLDEADEMLRMGFIEDVETIMAQ 176 (629)
T ss_pred EEeccHHHHhhcccHHHHHHHHHh
Confidence 999999999999999999998753
No 24
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.87 E-value=1.8e-21 Score=141.67 Aligned_cols=100 Identities=30% Similarity=0.511 Sum_probs=93.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
.+++++|++| ||.|+.+.++.++++. ++++..++||.+...+...+..+++|+|||||++.+++.++.+.++++++
T Consensus 71 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~ 150 (460)
T PRK11776 71 FRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNT 150 (460)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCE
Confidence 3579999999 9999999999998765 79999999999999999999999999999999999999999999999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
+|+||||+|++.||.+++..+++.
T Consensus 151 lViDEad~~l~~g~~~~l~~i~~~ 174 (460)
T PRK11776 151 LVLDEADRMLDMGFQDAIDAIIRQ 174 (460)
T ss_pred EEEECHHHHhCcCcHHHHHHHHHh
Confidence 999999999999999999988764
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.87 E-value=3.1e-21 Score=139.55 Aligned_cols=98 Identities=32% Similarity=0.503 Sum_probs=93.1
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
.+++||++| ||.|+++.++.++++.++++..++||.+...+...+.++++|+|+|||++.+++.++.+++++++++|
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lV 152 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLI 152 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEE
Confidence 479999999 99999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred EchhhhhhhcCcHHHHHhhhh
Q psy18035 82 FDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 82 lDEaD~ll~~gf~~~i~~i~~ 102 (104)
+||||+|++.||.+++..|..
T Consensus 153 iDEah~~l~~~~~~~~~~i~~ 173 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAA 173 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHH
Confidence 999999999999999998865
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.86 E-value=4.1e-21 Score=143.19 Aligned_cols=98 Identities=30% Similarity=0.428 Sum_probs=91.8
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC-CCCCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~-~~~l~~l~~l 80 (104)
++++||++| ||.|+++.++++.+..++++..++||.+...+...+.++++|+|+||++|.+++.++ .+.++.++++
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~l 163 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeee
Confidence 589999999 999999999999999999999999999999998889888999999999999998875 5779999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||.|++.||..++..|++
T Consensus 164 ViDEAh~lld~gf~~~i~~il~ 185 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLR 185 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHH
Confidence 9999999999999999998875
No 27
>KOG0337|consensus
Probab=99.86 E-value=4.1e-22 Score=141.63 Aligned_cols=100 Identities=53% Similarity=0.850 Sum_probs=95.4
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.|.+|+|+.| ||.|+.++++++++++++++.+++||.+.++|...+..+|||+++||||+.++.-.-.+.++.+.|+
T Consensus 89 ~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyV 168 (529)
T KOG0337|consen 89 TGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYV 168 (529)
T ss_pred cccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeee
Confidence 3689999999 9999999999999999999999999999999999999999999999999999888777899999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhhc
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
|+||||+++++||.+++..|++.
T Consensus 169 VfdEadrlfemgfqeql~e~l~r 191 (529)
T KOG0337|consen 169 VFDEADRLFEMGFQEQLHEILSR 191 (529)
T ss_pred eehhhhHHHhhhhHHHHHHHHHh
Confidence 99999999999999999999864
No 28
>KOG4284|consensus
Probab=99.86 E-value=2.5e-21 Score=143.51 Aligned_cols=100 Identities=26% Similarity=0.427 Sum_probs=91.9
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhcc-CCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
.+.|+++|++| +|.||++++..++.. .+.+|.+++||+.......+++. ++|+||||||+.++++.+.+++++++
T Consensus 91 ~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vr 169 (980)
T KOG4284|consen 91 SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVR 169 (980)
T ss_pred cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCcccee
Confidence 45799999999 999999999999864 68999999999999988877764 78999999999999999999999999
Q ss_pred EEEEchhhhhhh-cCcHHHHHhhhhc
Q psy18035 79 YVVFDEADRLFE-MGFDVEQQSPCDT 103 (104)
Q Consensus 79 ~lVlDEaD~ll~-~gf~~~i~~i~~~ 103 (104)
+||+||||+|++ ..|.++|..|+++
T Consensus 170 lfVLDEADkL~~t~sfq~~In~ii~s 195 (980)
T KOG4284|consen 170 LFVLDEADKLMDTESFQDDINIIINS 195 (980)
T ss_pred EEEeccHHhhhchhhHHHHHHHHHHh
Confidence 999999999999 5799999999874
No 29
>KOG0346|consensus
Probab=99.86 E-value=1.3e-21 Score=139.83 Aligned_cols=101 Identities=29% Similarity=0.418 Sum_probs=89.4
Q ss_pred CCCCeeEEEehh---HHHHHHHHHHHHhccCC--ceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCC-CCCC
Q psy18035 2 GFANINYLISFP---IVQQTFKFVKELGKFTK--LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLS 75 (104)
Q Consensus 2 ~~~~~~~lil~P---La~Qi~~~~~~l~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~-~~l~ 75 (104)
+..+|.|+||+| ||+|+++++.++..+++ ++..-+..+++......+|...|||+|+||++++.++..+. ..++
T Consensus 90 ~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~ 169 (569)
T KOG0346|consen 90 GEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLD 169 (569)
T ss_pred ccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhh
Confidence 456899999999 99999999999998875 56666666777777768888889999999999999999987 6789
Q ss_pred CccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 76 SIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
.+++||+||||.||+.||++++.+|.+
T Consensus 170 ~l~~LVvDEADLllsfGYeedlk~l~~ 196 (569)
T KOG0346|consen 170 SLSFLVVDEADLLLSFGYEEDLKKLRS 196 (569)
T ss_pred heeeEEechhhhhhhcccHHHHHHHHH
Confidence 999999999999999999999999864
No 30
>KOG0329|consensus
Probab=99.84 E-value=8.7e-21 Score=128.52 Aligned_cols=98 Identities=26% Similarity=0.422 Sum_probs=90.3
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
...++++|- ||.||.++..++++|+ ++++.+++||.+.+.....+++.|||+||||||++.+.+++.+++++++++
T Consensus 110 ~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhF 189 (387)
T KOG0329|consen 110 QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHF 189 (387)
T ss_pred eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhccee
Confidence 356788887 9999999999999995 699999999999999999999999999999999999999999999999999
Q ss_pred EEchhhhhhhc-CcHHHHHhhhh
Q psy18035 81 VFDEADRLFEM-GFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~-gf~~~i~~i~~ 102 (104)
|+||+|+|++. ....+++.|.+
T Consensus 190 vlDEcdkmle~lDMrRDvQEifr 212 (387)
T KOG0329|consen 190 VLDECDKMLEQLDMRRDVQEIFR 212 (387)
T ss_pred ehhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999976 78888888864
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.84 E-value=3e-20 Score=135.85 Aligned_cols=99 Identities=36% Similarity=0.507 Sum_probs=91.5
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC-CCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++++|||+| ||.|+++.++.+.++.++++..++||.+...+.+.+.. .++|+|+||++|.++...+...+++++++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~l 241 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVM 241 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceE
Confidence 589999999 99999999999999999999999999998888877764 59999999999999999888899999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhhc
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
|+||||.+++.+|.+++.+|++.
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~ 264 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQ 264 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHh
Confidence 99999999999999999988763
No 32
>KOG0340|consensus
Probab=99.84 E-value=6.2e-21 Score=133.39 Aligned_cols=99 Identities=29% Similarity=0.401 Sum_probs=92.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC----CCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM----ELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~----~~~l~~ 76 (104)
.|..|+|++| ||.|+.+.|..+++..++++.+++||++.-.|...|..+||++|+||||+.+++.++ ...+++
T Consensus 74 ~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~r 153 (442)
T KOG0340|consen 74 YGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQR 153 (442)
T ss_pred CcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhc
Confidence 5789999999 999999999999999999999999999999999999999999999999999999876 234899
Q ss_pred ccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 77 IQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 77 l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
++|+|+||||+|++.+|.++++.|.+
T Consensus 154 lkflVlDEADrvL~~~f~d~L~~i~e 179 (442)
T KOG0340|consen 154 LKFLVLDEADRVLAGCFPDILEGIEE 179 (442)
T ss_pred eeeEEecchhhhhccchhhHHhhhhc
Confidence 99999999999999999999988865
No 33
>KOG0327|consensus
Probab=99.81 E-value=3.1e-20 Score=130.42 Aligned_cols=100 Identities=29% Similarity=0.451 Sum_probs=91.1
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhc-CCCcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
....+|++++| ||.|++++...++.+.++++...+||.+...+...+. .+++|+||||||+.+++..+.+..+.++
T Consensus 92 ~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iK 171 (397)
T KOG0327|consen 92 VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIK 171 (397)
T ss_pred hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccccccccee
Confidence 34578999999 9999999999999999999999999999886555554 4599999999999999999999999999
Q ss_pred EEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 79 YVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 79 ~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
++|+||||.|++.||.+++..|.+
T Consensus 172 mfvlDEaDEmLs~gfkdqI~~if~ 195 (397)
T KOG0327|consen 172 MFVLDEADEMLSRGFKDQIYDIFQ 195 (397)
T ss_pred EEeecchHhhhccchHHHHHHHHH
Confidence 999999999999999999999875
No 34
>PTZ00424 helicase 45; Provisional
Probab=99.78 E-value=4.1e-18 Score=121.79 Aligned_cols=99 Identities=27% Similarity=0.490 Sum_probs=91.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
+++++||++| |+.|+.+.++.++...++++...+|+.....+...+.++++|+|+||+++.+++..+...+++++++
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lv 174 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLF 174 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEE
Confidence 5689999999 9999999999999888899999999999888888888889999999999999999888899999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||.+++.+|...+..+++
T Consensus 175 ViDEah~~~~~~~~~~~~~i~~ 196 (401)
T PTZ00424 175 ILDEADEMLSRGFKGQIYDVFK 196 (401)
T ss_pred EEecHHHHHhcchHHHHHHHHh
Confidence 9999999999999988877764
No 35
>KOG0349|consensus
Probab=99.75 E-value=1.7e-18 Score=124.46 Aligned_cols=100 Identities=27% Similarity=0.393 Sum_probs=91.2
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhcc---CCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKF---TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~---~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
-+.|+++|+-| ||.|+++.++++..+ +.++..++.||...+.|.+.+.++.||+||||||+.+++.++.+.+.+
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 36799999999 999999987777655 467888999999999999999999999999999999999999999999
Q ss_pred ccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 77 IQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 77 l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
++|||+||||.+|..||.+.|.+.-.
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~ 389 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHG 389 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhc
Confidence 99999999999999999998887643
No 36
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.74 E-value=4.7e-17 Score=106.82 Aligned_cols=99 Identities=38% Similarity=0.657 Sum_probs=90.4
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++++++|++| |+.|+.+.++.+.+..++++..++|+.+..+....+.++++|+|+||+++.++++++...+++++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~l 147 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYL 147 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEE
Confidence 5789999999 9999999999999888899999999999888777777789999999999999999888889999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||+|.+.+.+|...+..+.+
T Consensus 148 IvDE~h~~~~~~~~~~~~~~~~ 169 (203)
T cd00268 148 VLDEADRMLDMGFEDQIREILK 169 (203)
T ss_pred EEeChHHhhccChHHHHHHHHH
Confidence 9999999999999888887754
No 37
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.70 E-value=3.6e-16 Score=99.54 Aligned_cols=97 Identities=27% Similarity=0.422 Sum_probs=85.8
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHH-HHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMD-NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
.++++++| |+.|+++.++.+....++++..++|+.+.. .+...+.++++|+|+||+++.++++.+..++.+++++|
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iV 124 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIV 124 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEE
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccCcchhhccccccccccccceeec
Confidence 48999999 999999999999988889999999998865 55566666799999999999999998767888899999
Q ss_pred EchhhhhhhcCcHHHHHhhhh
Q psy18035 82 FDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 82 lDEaD~ll~~gf~~~i~~i~~ 102 (104)
+||+|.+.+.+|...+..|++
T Consensus 125 iDE~h~l~~~~~~~~~~~i~~ 145 (169)
T PF00270_consen 125 IDEAHHLSDETFRAMLKSILR 145 (169)
T ss_dssp EETHHHHHHTTHHHHHHHHHH
T ss_pred cCcccccccccHHHHHHHHHH
Confidence 999999999888888887765
No 38
>PRK09401 reverse gyrase; Reviewed
Probab=99.69 E-value=2.4e-16 Score=124.87 Aligned_cols=97 Identities=22% Similarity=0.332 Sum_probs=79.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCcc-----HHHHHHHhcC-CCcEEEeCcHHHHHHHHhCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDS-----MDNQFARLHA-SPDIVVATPGRFLHIVVEMELKL 74 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~-----~~~~~~~l~~-~~~IlV~TP~~l~~l~~~~~~~l 74 (104)
++++++|++| ||.|+++.+++++...++++..++|+.+ ..++...+.+ .++|+|+||+++.+++. .+..
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~ 199 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPK 199 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccc
Confidence 4789999999 9999999999999988888888887754 2334445554 49999999999998877 4566
Q ss_pred CCccEEEEchhhhhhh-----------cCcH-HHHHhhhh
Q psy18035 75 SSIQYVVFDEADRLFE-----------MGFD-VEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~-----------~gf~-~~i~~i~~ 102 (104)
++++++|+||||.|++ .||. ++++.+++
T Consensus 200 ~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~ 239 (1176)
T PRK09401 200 KKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAME 239 (1176)
T ss_pred cccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHH
Confidence 7799999999999996 6884 67777764
No 39
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.69 E-value=2e-16 Score=121.37 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=82.7
Q ss_pred CCeeEEEeh-h---HHHHHHHHHHHHhccC-----------------------CceEEEEEcCccHHHHHHHhcCCCcEE
Q psy18035 4 ANINYLISF-P---IVQQTFKFVKELGKFT-----------------------KLQSTCLLGGDSMDNQFARLHASPDIV 56 (104)
Q Consensus 4 ~~~~~lil~-P---La~Qi~~~~~~l~~~~-----------------------~~~~~~~~g~~~~~~~~~~l~~~~~Il 56 (104)
+.|++||++ | ||.|+++.++++++++ ++++..++||.+...|...+..+|+|+
T Consensus 60 ~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~II 139 (844)
T TIGR02621 60 KVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVI 139 (844)
T ss_pred cccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEE
Confidence 468889855 8 9999999999999865 488999999999999999999999999
Q ss_pred EeCcHHHHHHHHhCCCC----------------CCCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 57 VATPGRFLHIVVEMELK----------------LSSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 57 V~TP~~l~~l~~~~~~~----------------l~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|||+ +++.++.++ +++++++|+|||| +++||.+++..|++
T Consensus 140 VgT~----D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~ 195 (844)
T TIGR02621 140 VGTV----DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMN 195 (844)
T ss_pred EECH----HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHH
Confidence 9994 777777663 7899999999999 88999999999987
No 40
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.64 E-value=1.7e-15 Score=120.17 Aligned_cols=95 Identities=17% Similarity=0.269 Sum_probs=75.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEE---EEEcCccHHHH---HHHhcCC-CcEEEeCcHHHHHHHHhCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQST---CLLGGDSMDNQ---FARLHAS-PDIVVATPGRFLHIVVEMELK 73 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~---~~~g~~~~~~~---~~~l~~~-~~IlV~TP~~l~~l~~~~~~~ 73 (104)
++++++|++| ||.|+++.++++++..++++. .++||.+..++ ...+.++ ++|+||||+++.+.+..-.
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-- 197 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-- 197 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--
Confidence 4689999999 999999999999988776654 45788877654 3344554 9999999999998876522
Q ss_pred CCCccEEEEchhhhhhh-----------cCcHHH-HHhhh
Q psy18035 74 LSSIQYVVFDEADRLFE-----------MGFDVE-QQSPC 101 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~-----------~gf~~~-i~~i~ 101 (104)
. +++++|+||||.|++ .||.++ ++.|+
T Consensus 198 ~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il 236 (1171)
T TIGR01054 198 P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAW 236 (1171)
T ss_pred C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHH
Confidence 2 899999999999998 789874 66654
No 41
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=1.5e-15 Score=117.02 Aligned_cols=82 Identities=15% Similarity=0.304 Sum_probs=74.1
Q ss_pred eEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH-HHHHHhCCCCCC-------
Q psy18035 7 NYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEMELKLS------- 75 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l-~~l~~~~~~~l~------- 75 (104)
.++|++| ||.|+.+++..+.+++++++.+++||.+..++...+ +|||++|||||+ .++++.+.+.++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 4789999 999999999999999999999999999999887665 599999999999 999998877776
Q ss_pred CccEEEEchhhhhhh
Q psy18035 76 SIQYVVFDEADRLFE 90 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~ 90 (104)
.++++|+||||.||-
T Consensus 215 ~~~~~IIDEADsmLi 229 (970)
T PRK12899 215 GFYFAIIDEVDSILI 229 (970)
T ss_pred cccEEEEechhhhhh
Confidence 458999999999973
No 42
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.60 E-value=8e-15 Score=112.34 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=75.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC----CCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM----ELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~----~~~l~~ 76 (104)
+++++|+++| ||+|+.+.+++++ ..++++..+.|+++.. +...++++++|+|+||+++...+-.. ...+++
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~ 157 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRR 157 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhc
Confidence 4679999999 9999999999997 4578888888887754 44677778999999999997433211 123799
Q ss_pred ccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 77 IQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 77 l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
++++|+||||.|.+ .|..++..+++
T Consensus 158 l~~vViDEah~~~g-~fg~~~~~il~ 182 (742)
T TIGR03817 158 LRYVVIDECHSYRG-VFGSHVALVLR 182 (742)
T ss_pred CCEEEEeChhhccC-ccHHHHHHHHH
Confidence 99999999999976 47777665543
No 43
>PRK14701 reverse gyrase; Provisional
Probab=99.59 E-value=6.3e-15 Score=119.43 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=77.3
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccC--CceEEEEEcCccHHHHH---HHhcCC-CcEEEeCcHHHHHHHHhCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFT--KLQSTCLLGGDSMDNQF---ARLHAS-PDIVVATPGRFLHIVVEMELKL 74 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~--~~~~~~~~g~~~~~~~~---~~l~~~-~~IlV~TP~~l~~l~~~~~~~l 74 (104)
++++++|++| |+.|+++.++.+++.. ++++..++|+.+..++. +.+.++ ++|+|+||+++.+.+... . .
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~ 198 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-H 198 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-h
Confidence 4679999999 9999999999998875 46677788998877664 345555 999999999999877642 2 2
Q ss_pred CCccEEEEchhhhhhh-----------cCcHHHHHh
Q psy18035 75 SSIQYVVFDEADRLFE-----------MGFDVEQQS 99 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~-----------~gf~~~i~~ 99 (104)
.+++++|+||||+|++ .||.+++..
T Consensus 199 ~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 199 LKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred CCCCEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 7899999999999986 599998875
No 44
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.59 E-value=9e-15 Score=117.45 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=75.9
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHh------------ccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHH
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELG------------KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 68 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~------------~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~ 68 (104)
+++++|+++| |++|+++.++... ...++++...+|+++..++.+.+++.|||+|+||+++..++.
T Consensus 36 ~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLt 115 (1490)
T PRK09751 36 KTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLT 115 (1490)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHh
Confidence 4689999999 9999999887521 135789999999999999888888889999999999999887
Q ss_pred hCC-CCCCCccEEEEchhhhhhhcC
Q psy18035 69 EME-LKLSSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 69 ~~~-~~l~~l~~lVlDEaD~ll~~g 92 (104)
++. ..+++++++|+||+|.|++..
T Consensus 116 sk~r~~L~~Vr~VIVDE~H~L~g~k 140 (1490)
T PRK09751 116 SRARETLRGVETVIIDEVHAVAGSK 140 (1490)
T ss_pred hhhhhhhccCCEEEEecHHHhcccc
Confidence 543 468999999999999999763
No 45
>KOG0332|consensus
Probab=99.56 E-value=2.8e-15 Score=105.89 Aligned_cols=96 Identities=27% Similarity=0.442 Sum_probs=79.9
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCCCCCCcc
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQ 78 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~-~~~~l~~l~ 78 (104)
...|++++|+| ||.|+.+++.+++++++++....+.|.....- -.-..+|+|||||.+.+|+.. +.++++.++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhce
Confidence 35799999999 99999999999999999998888877621111 011258999999999999998 889999999
Q ss_pred EEEEchhhhhhhc-CcHHHHHhhh
Q psy18035 79 YVVFDEADRLFEM-GFDVEQQSPC 101 (104)
Q Consensus 79 ~lVlDEaD~ll~~-gf~~~i~~i~ 101 (104)
.||+||||.|++. ||.++--.|.
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~ 258 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIM 258 (477)
T ss_pred EEEecchhhhhhcccccccchhhh
Confidence 9999999999976 8988766654
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.56 E-value=1.5e-14 Score=112.55 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=77.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHH-------Hh----ccC-CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHH
Q psy18035 4 ANINYLISFP---IVQQTFKFVKE-------LG----KFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 68 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~-------l~----~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~ 68 (104)
+++++|+++| ||+|+++.+.+ +. ... ++++...+|+++..++.+.+.++++|+|+||+++..++.
T Consensus 83 ~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~ 162 (876)
T PRK13767 83 DKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLN 162 (876)
T ss_pred CCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhc
Confidence 4689999999 99999876542 22 223 678899999999888888888899999999999998887
Q ss_pred hCCC--CCCCccEEEEchhhhhhhcCcHHHHHh
Q psy18035 69 EMEL--KLSSIQYVVFDEADRLFEMGFDVEQQS 99 (104)
Q Consensus 69 ~~~~--~l~~l~~lVlDEaD~ll~~gf~~~i~~ 99 (104)
+..+ .+++++++|+||+|.+++..+..++..
T Consensus 163 ~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~ 195 (876)
T PRK13767 163 SPKFREKLRTVKWVIVDEIHSLAENKRGVHLSL 195 (876)
T ss_pred ChhHHHHHhcCCEEEEechhhhccCccHHHHHH
Confidence 6554 479999999999999998766555443
No 47
>KOG0344|consensus
Probab=99.54 E-value=3.7e-15 Score=109.47 Aligned_cols=102 Identities=22% Similarity=0.259 Sum_probs=83.9
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHh--ccCCceEEEEEcCcc-HHHHHHHhcCCCcEEEeCcHHHHHHHHhCC--CCC
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELG--KFTKLQSTCLLGGDS-MDNQFARLHASPDIVVATPGRFLHIVVEME--LKL 74 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~--~~~~~~~~~~~g~~~-~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~--~~l 74 (104)
..|.+|+|+.| ||.|+++++.++. ..++.+...+..... ............+++|+||.|+..++..+. +++
T Consensus 207 ~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 207 KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 35789999999 9999999999999 777777766654432 222222233458999999999999999876 789
Q ss_pred CCccEEEEchhhhhhhc-CcHHHHHhhhhcC
Q psy18035 75 SSIQYVVFDEADRLFEM-GFDVEQQSPCDTS 104 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~-gf~~~i~~i~~~~ 104 (104)
+.+.++|+||||++++. +|..++..|+++|
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac 317 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSAC 317 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHh
Confidence 99999999999999999 9999999999875
No 48
>PRK02362 ski2-like helicase; Provisional
Probab=99.54 E-value=3.1e-14 Score=109.09 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=79.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++.++++++| ||.|.++.++++.+ .++++..++|+.+...+ . ...++|+|+||+++..+++++...+++++++
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~--~-l~~~~IiV~Tpek~~~llr~~~~~l~~v~lv 141 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE--W-LGDNDIIVATSEKVDSLLRNGAPWLDDITCV 141 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc--c-cCCCCEEEECHHHHHHHHhcChhhhhhcCEE
Confidence 4678999999 99999999998764 47899999998765432 2 2358999999999999998776668999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||+|.+.+.++.+.++.+++
T Consensus 142 ViDE~H~l~d~~rg~~le~il~ 163 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLA 163 (737)
T ss_pred EEECccccCCCcchHHHHHHHH
Confidence 9999999999888888776653
No 49
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=5.2e-14 Score=108.48 Aligned_cols=83 Identities=16% Similarity=0.280 Sum_probs=73.4
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH-HHHHHhC-CCCC-----
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM-ELKL----- 74 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l-~~l~~~~-~~~l----- 74 (104)
|..+.|++| ||.|.++++..+.+++++++.+++||.+..++.... .+||++||||++ .++++.+ .+++
T Consensus 123 G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~ 200 (896)
T PRK13104 123 GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQ 200 (896)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhc
Confidence 457899999 999999999999999999999999999887765554 589999999999 8999877 4555
Q ss_pred CCccEEEEchhhhhh
Q psy18035 75 SSIQYVVFDEADRLF 89 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll 89 (104)
+.+.++|+||||.||
T Consensus 201 r~l~~~IvDEaDsiL 215 (896)
T PRK13104 201 RELNFAIVDEVDSIL 215 (896)
T ss_pred cccceEEeccHhhhh
Confidence 689999999999996
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=99.51 E-value=8e-14 Score=106.60 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=80.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++.++|+++| ||.|.++.++.+. ..++++..++|+.+...+ . ...++|+|+||+++..+++++...+++++++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~--~-~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lv 142 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE--W-LGKYDIIIATAEKFDSLLRHGSSWIKDVKLV 142 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh--h-hccCCEEEEcHHHHHHHHhCCchhhhcCCEE
Confidence 4679999999 9999999998875 368899999998875433 2 2458999999999999998877778999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||+|.+.+.++...++.+++
T Consensus 143 ViDE~H~l~~~~rg~~le~il~ 164 (720)
T PRK00254 143 VADEIHLIGSYDRGATLEMILT 164 (720)
T ss_pred EEcCcCccCCccchHHHHHHHH
Confidence 9999999999888888888765
No 51
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.51 E-value=8e-14 Score=106.00 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=73.8
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CCCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM------ELKL 74 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l-~~l~~~~------~~~l 74 (104)
|.++.|++| ||.|.++.+..+.+++++++.+++||.+..++.... .+||++|||+++ .++++.+ .+.+
T Consensus 97 G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~ 174 (745)
T TIGR00963 97 GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQ 174 (745)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhc
Confidence 457999999 999999999999999999999999999876655444 489999999999 7988876 3568
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
+++.++|+||+|.|+=
T Consensus 175 r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 175 RPFHFAIIDEVDSILI 190 (745)
T ss_pred cccceeEeecHHHHhH
Confidence 9999999999999974
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.50 E-value=1e-13 Score=105.48 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=68.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHH---HHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMD---NQFARLHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~---~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++++++|++| ||.|+++.++++.+..++++.+++|+.+.. ++...+.++ ++|+||||+++.+ .+.+++
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcc
Confidence 5789999999 999999999999998899999999999854 344455665 9999999988743 456899
Q ss_pred ccEEEEchhhhh
Q psy18035 77 IQYVVFDEADRL 88 (104)
Q Consensus 77 l~~lVlDEaD~l 88 (104)
++++|+||+|++
T Consensus 384 l~lvVIDE~Hrf 395 (681)
T PRK10917 384 LGLVIIDEQHRF 395 (681)
T ss_pred cceEEEechhhh
Confidence 999999999986
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.48 E-value=1.9e-13 Score=103.27 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=68.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHH---HHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDN---QFARLHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~---~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
+++++++++| ||.|+++.++++.+..++++.+++|+.+..+ ....+.++ ++|+||||+++.+ .+.+++
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~ 357 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKR 357 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccc
Confidence 4689999999 9999999999999888999999999987655 44455554 8999999998753 456899
Q ss_pred ccEEEEchhhhh
Q psy18035 77 IQYVVFDEADRL 88 (104)
Q Consensus 77 l~~lVlDEaD~l 88 (104)
+.++|+||+|++
T Consensus 358 l~lvVIDEaH~f 369 (630)
T TIGR00643 358 LALVIIDEQHRF 369 (630)
T ss_pred cceEEEechhhc
Confidence 999999999984
No 54
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=5.4e-13 Score=102.39 Aligned_cols=85 Identities=11% Similarity=0.116 Sum_probs=71.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH-HHHHHhCC------CC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEME------LK 73 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l-~~l~~~~~------~~ 73 (104)
+|+++.|++| ||.|.++.+..+.+++++++.+++||.+..++.+. ..++||++|||+++ .++++.+. ..
T Consensus 118 ~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~ 196 (790)
T PRK09200 118 EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKV 196 (790)
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhc
Confidence 5789999999 99999999999999999999999999984433333 34699999999999 46665432 34
Q ss_pred CCCccEEEEchhhhhh
Q psy18035 74 LSSIQYVVFDEADRLF 89 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll 89 (104)
++.++++|+||||.||
T Consensus 197 ~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 197 QRPLNYAIIDEIDSIL 212 (790)
T ss_pred ccccceEEEeccccce
Confidence 6899999999999996
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=99.42 E-value=7.7e-13 Score=100.57 Aligned_cols=94 Identities=11% Similarity=0.142 Sum_probs=77.5
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
+.++++++| ||.|+++.++++. ..+.++...+|+....... .+.++|+|+||+++..++++....+++++++|
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvV 140 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPDF---IKRYDVVILTSEKADSLIHHDPYIINDVGLIV 140 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChhh---hccCCEEEECHHHHHHHHhCChhHHhhcCEEE
Confidence 578999999 9999999999875 4678888888887654322 24689999999999999888776789999999
Q ss_pred EchhhhhhhcCcHHHHHhhhh
Q psy18035 82 FDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 82 lDEaD~ll~~gf~~~i~~i~~ 102 (104)
+||||.+.+.++.+.++.+++
T Consensus 141 iDEaH~l~d~~rg~~le~ll~ 161 (674)
T PRK01172 141 ADEIHIIGDEDRGPTLETVLS 161 (674)
T ss_pred EecchhccCCCccHHHHHHHH
Confidence 999999998888877776653
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.41 E-value=1.3e-12 Score=103.86 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=66.4
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cC-CCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++++++|++| ||.|+++.+++.....++++..++|+.+..++.+.+ .+ .++|+||||+.+ ++.+.+++
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~ 722 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKD 722 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhh
Confidence 4789999999 999999999987777788998999988877766544 33 489999999643 24567899
Q ss_pred ccEEEEchhhhh
Q psy18035 77 IQYVVFDEADRL 88 (104)
Q Consensus 77 l~~lVlDEaD~l 88 (104)
++++|+||+|++
T Consensus 723 L~lLVIDEahrf 734 (1147)
T PRK10689 723 LGLLIVDEEHRF 734 (1147)
T ss_pred CCEEEEechhhc
Confidence 999999999997
No 57
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.38 E-value=2.2e-12 Score=98.63 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=69.3
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCcc---HHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDS---MDNQFARLHASPDIVVATPGRF-LHIVVEM------ 70 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~---~~~~~~~l~~~~~IlV~TP~~l-~~l~~~~------ 70 (104)
.++.++|++| ||.|..+++..+.+++++++.+.+++.. ...+.+....++||++|||+++ .++++.+
T Consensus 110 ~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~ 189 (762)
T TIGR03714 110 TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKE 189 (762)
T ss_pred cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchh
Confidence 3567999999 9999999999999999999998887632 3333444556799999999999 4655432
Q ss_pred CCCCCCccEEEEchhhhhhh
Q psy18035 71 ELKLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 71 ~~~l~~l~~lVlDEaD~ll~ 90 (104)
...++.+.++|+||||.||-
T Consensus 190 ~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 190 GKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred hcccccCcEEEEecHhhHhh
Confidence 34578999999999999963
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.36 E-value=3.2e-12 Score=99.87 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=65.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHH---HHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQ---FARLHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++++++|++| ||.|+++.++++.+..++++..++|+.+..++ .+.+.++ ++|+||||. ++ ++.+.+++
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll-~~~v~f~~ 573 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LL-QKDVKFKD 573 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hh-hCCCCccc
Confidence 4689999999 99999999999988888999999888775443 3445554 999999993 22 35678999
Q ss_pred ccEEEEchhhhh
Q psy18035 77 IQYVVFDEADRL 88 (104)
Q Consensus 77 l~~lVlDEaD~l 88 (104)
++++|+||+|++
T Consensus 574 L~llVIDEahrf 585 (926)
T TIGR00580 574 LGLLIIDEEQRF 585 (926)
T ss_pred CCEEEeeccccc
Confidence 999999999995
No 59
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=6.3e-12 Score=96.78 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=72.7
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH-HHHHHhCC------CCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEME------LKL 74 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l-~~l~~~~~------~~l 74 (104)
|.++-|++| ||.|.++.+..+.+++++++.+++|+++..++...+ .+||++|||+++ .++++.+. ...
T Consensus 122 G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~ 199 (830)
T PRK12904 122 GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQ 199 (830)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcc
Confidence 345668999 999999999999999999999999999988877665 489999999999 78998765 246
Q ss_pred CCccEEEEchhhhhh
Q psy18035 75 SSIQYVVFDEADRLF 89 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll 89 (104)
+.+.+.|+||||.||
T Consensus 200 r~~~~aIvDEaDsiL 214 (830)
T PRK12904 200 RGLNYAIVDEVDSIL 214 (830)
T ss_pred cccceEEEechhhhe
Confidence 889999999999996
No 60
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.30 E-value=5.3e-12 Score=97.05 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=81.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCC--CCCCcc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL--KLSSIQ 78 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~--~l~~l~ 78 (104)
.+.++|+++| |++.+.+.++..++..++.+.+.+|+++..+..+..++.|||+|+||+.|.-++..+.+ .|++++
T Consensus 72 ~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr 151 (814)
T COG1201 72 DGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVR 151 (814)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCc
Confidence 4689999999 99999999999999999999999999999999888999999999999999998877654 389999
Q ss_pred EEEEchhhhhhhc
Q psy18035 79 YVVFDEADRLFEM 91 (104)
Q Consensus 79 ~lVlDEaD~ll~~ 91 (104)
++|+||.|.+.+.
T Consensus 152 ~VIVDEiHel~~s 164 (814)
T COG1201 152 YVIVDEIHALAES 164 (814)
T ss_pred EEEeehhhhhhcc
Confidence 9999999999865
No 61
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.24 E-value=4.8e-11 Score=87.15 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=73.9
Q ss_pred eEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEc
Q psy18035 7 NYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFD 83 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlD 83 (104)
++|+|+| |+.|..+.+++...-++-.++.+.|..+..+...... ..+|+|+||..+.+-+..+.++++++.++|+|
T Consensus 60 kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifD 138 (542)
T COG1111 60 KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFD 138 (542)
T ss_pred eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEec
Confidence 7999999 9999999999998888888899999988776544443 46899999999999999999999999999999
Q ss_pred hhhhhhhc
Q psy18035 84 EADRLFEM 91 (104)
Q Consensus 84 EaD~ll~~ 91 (104)
|||+--..
T Consensus 139 EAHRAvGn 146 (542)
T COG1111 139 EAHRAVGN 146 (542)
T ss_pred hhhhccCc
Confidence 99997643
No 62
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.18 E-value=6.8e-10 Score=71.06 Aligned_cols=97 Identities=34% Similarity=0.526 Sum_probs=78.2
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCC-cEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP-DIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
.++++++| ++.|..+.+..+............++.........+.++. +++++||+++.+...........++++|
T Consensus 55 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iI 134 (201)
T smart00487 55 KRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVI 134 (201)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEE
Confidence 57999999 8999988888877655545555666666566666666666 9999999999999988777788999999
Q ss_pred EchhhhhhhcCcHHHHHhhhh
Q psy18035 82 FDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 82 lDEaD~ll~~gf~~~i~~i~~ 102 (104)
+||||.+....+...+..+++
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHH
Confidence 999999987677777777765
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=1.5e-10 Score=87.67 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=69.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhCCC-------
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMEL------- 72 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~~~------- 72 (104)
+|++++|++| ||.|.++++..+.++.++++.+++||++.. .+....++||++||.+.+- ++++.+..
T Consensus 143 ~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~ 220 (656)
T PRK12898 143 AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASD 220 (656)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccc
Confidence 5789999999 999999999999999999999999998743 4445567999999999985 66654421
Q ss_pred ------------------CCCCccEEEEchhhhhh
Q psy18035 73 ------------------KLSSIQYVVFDEADRLF 89 (104)
Q Consensus 73 ------------------~l~~l~~lVlDEaD~ll 89 (104)
-.+.+.+.|+||+|-+|
T Consensus 221 ~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 221 ARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred hhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 13668899999999886
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.15 E-value=1.4e-10 Score=85.89 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=65.1
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
..++||++| |+.|..+.++++.......+..+.||.... .+.+|+|+||+++.+... ..++++.++|
T Consensus 158 ~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iI 227 (501)
T PHA02558 158 EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVI 227 (501)
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEE
Confidence 348999999 999999999998765555666666665432 347999999999976432 2468899999
Q ss_pred EchhhhhhhcCcHHHHHh
Q psy18035 82 FDEADRLFEMGFDVEQQS 99 (104)
Q Consensus 82 lDEaD~ll~~gf~~~i~~ 99 (104)
+||||.+.+..|..-+..
T Consensus 228 vDEaH~~~~~~~~~il~~ 245 (501)
T PHA02558 228 VDECHLFTGKSLTSIITK 245 (501)
T ss_pred EEchhcccchhHHHHHHh
Confidence 999999988776554443
No 65
>PRK13766 Hef nuclease; Provisional
Probab=99.15 E-value=4.7e-10 Score=86.49 Aligned_cols=86 Identities=23% Similarity=0.354 Sum_probs=71.1
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
+.++||++| |+.|..+.++++....+.++..+.|+.+..+. ..+..+.+|+|+||+.+...+..+.+.+.+++++|
T Consensus 58 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liV 136 (773)
T PRK13766 58 GGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLI 136 (773)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 568999999 99999999998876555677788888776543 44455689999999999988888888899999999
Q ss_pred Echhhhhhhc
Q psy18035 82 FDEADRLFEM 91 (104)
Q Consensus 82 lDEaD~ll~~ 91 (104)
+||||++...
T Consensus 137 vDEaH~~~~~ 146 (773)
T PRK13766 137 FDEAHRAVGN 146 (773)
T ss_pred EECCcccccc
Confidence 9999998754
No 66
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=1.7e-10 Score=84.78 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=64.5
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHH---HhcC-CCcEEEeCcHHHHHHH-HhCCC-CCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA---RLHA-SPDIVVATPGRFLHIV-VEMEL-KLS 75 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~---~l~~-~~~IlV~TP~~l~~l~-~~~~~-~l~ 75 (104)
+..+||++| |+.|..+.++. .++++..+.|+....++.. .+.. .++|+++||+++.... ....+ ...
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~ 126 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERK 126 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcC
Confidence 457999999 88887776664 3577777777766554332 2333 3899999999986322 11122 568
Q ss_pred CccEEEEchhhhhhhcC--cHHHHHhh
Q psy18035 76 SIQYVVFDEADRLFEMG--FDVEQQSP 100 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~g--f~~~i~~i 100 (104)
+++++|+||||++.++| |.++...+
T Consensus 127 ~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 127 GITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred CcCEEEEeCCcccCccccccHHHHHHH
Confidence 99999999999999876 67766554
No 67
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.14 E-value=2.1e-10 Score=90.68 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=64.6
Q ss_pred CeeEEEehh---HHH-HHHHHHHHHhccCCceEEEEEcCccHHHHHHHhc------CCCcEEEeCcHHHHH---HHHh-C
Q psy18035 5 NINYLISFP---IVQ-QTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH------ASPDIVVATPGRFLH---IVVE-M 70 (104)
Q Consensus 5 ~~~~lil~P---La~-Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~IlV~TP~~l~~---l~~~-~ 70 (104)
+..+||++| |+. |+.+... .+++...+.|+....++...+. ..++|+++||+++.. +++. .
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~-----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~ 574 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQ-----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLE 574 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHh-----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHH
Confidence 357999999 766 4333222 4788899999998877765543 348999999999862 2221 1
Q ss_pred CC-CCCCccEEEEchhhhhhhcC--cHHHHHhh
Q psy18035 71 EL-KLSSIQYVVFDEADRLFEMG--FDVEQQSP 100 (104)
Q Consensus 71 ~~-~l~~l~~lVlDEaD~ll~~g--f~~~i~~i 100 (104)
.+ ....+.++|+||||+++++| |+++...+
T Consensus 575 ~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L 607 (1195)
T PLN03137 575 NLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGL 607 (1195)
T ss_pred hhhhccccceeccCcchhhhhcccchHHHHHHH
Confidence 11 23568999999999999987 77876653
No 68
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.12 E-value=1.8e-09 Score=65.43 Aligned_cols=91 Identities=33% Similarity=0.508 Sum_probs=74.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
...++++++| ++.|..+.+...... +.....+.++.....+......+.+++++|++++...............++
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~i 107 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLL 107 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEE
Confidence 4578999999 999998888877665 677777777777766666666779999999999998887766566788999
Q ss_pred EEchhhhhhhcCcHH
Q psy18035 81 VFDEADRLFEMGFDV 95 (104)
Q Consensus 81 VlDEaD~ll~~gf~~ 95 (104)
|+||+|.+....+..
T Consensus 108 iiDE~h~~~~~~~~~ 122 (144)
T cd00046 108 ILDEAHRLLNQGFGL 122 (144)
T ss_pred EEeCHHHHhhcchHH
Confidence 999999998776554
No 69
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=2.5e-10 Score=88.44 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=70.9
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH-HHHHHhC-CCCC-----
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM-ELKL----- 74 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l-~~l~~~~-~~~l----- 74 (104)
|..+.|++| ||.|..+++..+.++.++++.++.++.+..+.... -++||++|||+++ .++++.+ .++.
T Consensus 123 g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vq 200 (908)
T PRK13107 123 GKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQ 200 (908)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhc
Confidence 455899999 99999999999999999999999999886443222 2689999999999 7999877 4444
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
+.+.+.|+||||.+|-
T Consensus 201 r~~~~aIvDEvDsiLi 216 (908)
T PRK13107 201 RPLHYALIDEVDSILI 216 (908)
T ss_pred cccceeeecchhhhcc
Confidence 8899999999999973
No 70
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.08 E-value=2.1e-10 Score=88.43 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=75.4
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
+-+++++|| ||.|.++.++++ ...++++...+|++....+. -.+++|+|+||+++-.++++.......++++|
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvV 151 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVV 151 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcchhhcccEEE
Confidence 468999999 999999999955 35799999999998865532 23589999999999999998877889999999
Q ss_pred EchhhhhhhcCcHHHHHhh
Q psy18035 82 FDEADRLFEMGFDVEQQSP 100 (104)
Q Consensus 82 lDEaD~ll~~gf~~~i~~i 100 (104)
+||+|.+-|..-.+-++.|
T Consensus 152 iDEiH~l~d~~RG~~lE~i 170 (766)
T COG1204 152 IDEIHLLGDRTRGPVLESI 170 (766)
T ss_pred EeeeeecCCcccCceehhH
Confidence 9999999877444444444
No 71
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.07 E-value=9.9e-10 Score=85.32 Aligned_cols=82 Identities=15% Similarity=0.294 Sum_probs=62.8
Q ss_pred CeeEEEehh---HHHHHHHHHH-HHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVK-ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~-~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
+.+++|+.| +|.|+.+.+. .+....+..+...+++.+ ...+..+|+|+|||++.+++.+ ...+++++++
T Consensus 45 ~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~V 117 (819)
T TIGR01970 45 GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGAL 117 (819)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEE
Confidence 469999999 9999998774 455445555555555432 2344689999999999998876 4579999999
Q ss_pred EEchhh-hhhhcCc
Q psy18035 81 VFDEAD-RLFEMGF 93 (104)
Q Consensus 81 VlDEaD-~ll~~gf 93 (104)
|+||+| ++++.+|
T Consensus 118 IiDEaHER~L~~Dl 131 (819)
T TIGR01970 118 IFDEFHERSLDADL 131 (819)
T ss_pred EEeccchhhhccch
Confidence 999999 5787654
No 72
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=99.06 E-value=4.8e-10 Score=76.49 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=62.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceE-EEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQS-TCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~-~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
.+|.+||+++ -|..+.+.++.+... +.++ .++.-....++|...|.++ .+|.||||+|+..+++++.+.+++++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 4799999999 566666665555211 1222 2334567889999999864 89999999999999999999999999
Q ss_pred EEEEchh
Q psy18035 79 YVVFDEA 85 (104)
Q Consensus 79 ~lVlDEa 85 (104)
++|+|--
T Consensus 204 ~ivlD~s 210 (252)
T PF14617_consen 204 RIVLDWS 210 (252)
T ss_pred EEEEcCC
Confidence 9999963
No 73
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.05 E-value=1.1e-09 Score=82.47 Aligned_cols=92 Identities=18% Similarity=0.146 Sum_probs=67.6
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hc-CCCcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LH-ASPDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~-~~~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
..++|++| |..|..+.++.+ ++.+..+.++.+..+.... +. ...+|+++||+++........+...+++
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~ 129 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIA 129 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCC
Confidence 46899999 888777777654 5777778888776654332 33 3489999999999743333445578999
Q ss_pred EEEEchhhhhhhcC--cHHHHHhhh
Q psy18035 79 YVVFDEADRLFEMG--FDVEQQSPC 101 (104)
Q Consensus 79 ~lVlDEaD~ll~~g--f~~~i~~i~ 101 (104)
++|+||||.+.+.| |+++...+.
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~ 154 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLG 154 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHH
Confidence 99999999998866 777766553
No 74
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.03 E-value=1.3e-09 Score=82.14 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=70.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHH---HHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMD---NQFARLHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~---~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
+|.|+..++| ||.|.++.+.++.+..++++..++|....+ +....+.+| .||+||| +.+-+..+.|++
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~ 384 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHN 384 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecc
Confidence 5789999999 999999999999999999999999987644 444556677 9999999 777778888999
Q ss_pred ccEEEEchhhhh
Q psy18035 77 IQYVVFDEADRL 88 (104)
Q Consensus 77 l~~lVlDEaD~l 88 (104)
+-++|+||-|+.
T Consensus 385 LgLVIiDEQHRF 396 (677)
T COG1200 385 LGLVIIDEQHRF 396 (677)
T ss_pred eeEEEEeccccc
Confidence 999999999986
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.02 E-value=1.8e-09 Score=84.17 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=75.1
Q ss_pred eEEEehh---HHHHHHHHHHHHhccCC--ceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCC----CCCCCc
Q psy18035 7 NYLISFP---IVQQTFKFVKELGKFTK--LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME----LKLSSI 77 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~----~~l~~l 77 (104)
+||+|.| ||+...+.++++....+ +++..+.|.++.++......+.|||+++||.+|..++-... ..++++
T Consensus 117 ~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~L 196 (851)
T COG1205 117 RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNL 196 (851)
T ss_pred cEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcC
Confidence 6799999 99999999999987766 88888899998888877888889999999999998553332 347899
Q ss_pred cEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 78 QYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 78 ~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
+|+|+||+|..- ..|..++--++
T Consensus 197 k~lVvDElHtYr-Gv~GS~vA~ll 219 (851)
T COG1205 197 KYLVVDELHTYR-GVQGSEVALLL 219 (851)
T ss_pred cEEEEecceecc-ccchhHHHHHH
Confidence 999999999653 33555544433
No 76
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.02 E-value=1.2e-09 Score=84.89 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=62.3
Q ss_pred CeeEEEehh---HHHHHHHHHH-HHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVK-ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~-~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
+.+++|+.| +|.|+.+.+. .+....+..+...+++.+.. .+..+|+|+|||++.+++.+ ...+++++++
T Consensus 48 ~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~I 120 (812)
T PRK11664 48 NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLV 120 (812)
T ss_pred CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEE
Confidence 358999999 9999999874 55666677777767665432 23468999999999998876 4579999999
Q ss_pred EEchhhh-hhhc
Q psy18035 81 VFDEADR-LFEM 91 (104)
Q Consensus 81 VlDEaD~-ll~~ 91 (104)
|+||+|. .++.
T Consensus 121 IlDEaHER~l~~ 132 (812)
T PRK11664 121 ILDEFHERSLQA 132 (812)
T ss_pred EEcCCCcccccc
Confidence 9999997 4554
No 77
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.97 E-value=2.7e-09 Score=80.71 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=64.5
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHH---HhcCC-CcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA---RLHAS-PDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
..++|++| |+.|..+.++.+ ++....+.++.+..++.. .+..+ .+++++||+++....-...+...+++
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~ 141 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPA 141 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCC
Confidence 46899999 888887777653 577777777766655433 23334 79999999999832211234456789
Q ss_pred EEEEchhhhhhhcC--cHHHHHhh
Q psy18035 79 YVVFDEADRLFEMG--FDVEQQSP 100 (104)
Q Consensus 79 ~lVlDEaD~ll~~g--f~~~i~~i 100 (104)
++|+||||.+.++| |.++...+
T Consensus 142 ~iVIDEaH~i~~~G~~fr~~y~~L 165 (607)
T PRK11057 142 LLAVDEAHCISQWGHDFRPEYAAL 165 (607)
T ss_pred EEEEeCccccccccCcccHHHHHH
Confidence 99999999999876 77765544
No 78
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.92 E-value=5.9e-09 Score=79.79 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=59.1
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcC-CCcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHA-SPDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~-~~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||++| |+.|+.+.+++. .+.++..++|+.+..++.+. +.+ .++|+||||+++. ..++++
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~---fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l 259 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRAR---FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNL 259 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH---hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCC
Confidence 679999999 999999988764 35788899999876554332 333 4899999998864 457899
Q ss_pred cEEEEchhhhhh
Q psy18035 78 QYVVFDEADRLF 89 (104)
Q Consensus 78 ~~lVlDEaD~ll 89 (104)
.++|+||+|...
T Consensus 260 ~liVvDEeh~~s 271 (679)
T PRK05580 260 GLIIVDEEHDSS 271 (679)
T ss_pred CEEEEECCCccc
Confidence 999999999653
No 79
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.91 E-value=7.6e-09 Score=79.01 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=61.4
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhcc---CCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKF---TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~---~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
++.+++|++| ||.|+...+.+..++ .+.++.+.+||.+. .+.....++.+++++||+. ....++++
T Consensus 221 ~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v 292 (675)
T PHA02653 221 IERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDY 292 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccC
Confidence 3568999999 999999998876655 35677888999873 3223333468999999862 11257899
Q ss_pred cEEEEchhhhhhhcC
Q psy18035 78 QYVVFDEADRLFEMG 92 (104)
Q Consensus 78 ~~lVlDEaD~ll~~g 92 (104)
+++|+||||++...+
T Consensus 293 ~~VVIDEaHEr~~~~ 307 (675)
T PHA02653 293 GTVIIDEVHEHDQIG 307 (675)
T ss_pred CEEEccccccCccch
Confidence 999999999998776
No 80
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.88 E-value=1.2e-08 Score=80.71 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=73.8
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCC
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLS 75 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~ 75 (104)
.+|.|+.|||| ||+|.|+.|++=-+..++++..+..=.+.+++... +.+| .||+||| +-+-++.+.++
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~Fk 715 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFK 715 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEe
Confidence 46799999999 99999999998888899999988776666655444 5566 8999999 56667788899
Q ss_pred CccEEEEchhhhhhhcCcHHHHHhh
Q psy18035 76 SIQYVVFDEADRLFEMGFDVEQQSP 100 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~gf~~~i~~i 100 (104)
++-.+|+||=++. .-...+.++++
T Consensus 716 dLGLlIIDEEqRF-GVk~KEkLK~L 739 (1139)
T COG1197 716 DLGLLIIDEEQRF-GVKHKEKLKEL 739 (1139)
T ss_pred cCCeEEEechhhc-CccHHHHHHHH
Confidence 9999999999875 23355555554
No 81
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.71 E-value=3.3e-08 Score=70.05 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=56.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccH------------HHHHHHhc------CCCcEEEeCcHH
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSM------------DNQFARLH------ASPDIVVATPGR 62 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~------------~~~~~~l~------~~~~IlV~TP~~ 62 (104)
.+.++++++| |+.|+++.++.+... +....+|+... ........ ...+|+|+||++
T Consensus 28 ~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~ 104 (358)
T TIGR01587 28 KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQ 104 (358)
T ss_pred CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHH
Confidence 3579999999 999999998886321 23333443221 11111111 136899999999
Q ss_pred HHHHHHhCC----CCCC--CccEEEEchhhhhhhcCcHH
Q psy18035 63 FLHIVVEME----LKLS--SIQYVVFDEADRLFEMGFDV 95 (104)
Q Consensus 63 l~~l~~~~~----~~l~--~l~~lVlDEaD~ll~~gf~~ 95 (104)
+...+..+. ..+. ..+++|+||||.+.+.++..
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~ 143 (358)
T TIGR01587 105 VLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL 143 (358)
T ss_pred HHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH
Confidence 997766521 1111 23789999999999875443
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.66 E-value=4.9e-08 Score=78.60 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=55.3
Q ss_pred HHHHHHHHHHH-HhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhh-hhhhc
Q psy18035 14 IVQQTFKFVKE-LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEAD-RLFEM 91 (104)
Q Consensus 14 La~Qi~~~~~~-l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD-~ll~~ 91 (104)
+|.|+.+++.. ++...++++ ....+ ..++++|+++|||+|++.+..+.. +++++++|+|||| ++++.
T Consensus 134 LA~RVA~El~~~lG~~VGY~v-------rf~~~---~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~ 202 (1294)
T PRK11131 134 VANRIAEELETELGGCVGYKV-------RFNDQ---VSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNI 202 (1294)
T ss_pred HHHHHHHHHhhhhcceeceee-------cCccc---cCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCcccccccc
Confidence 88888887774 444444332 11112 235689999999999998886654 8999999999999 68998
Q ss_pred CcHHH-HHhhh
Q psy18035 92 GFDVE-QQSPC 101 (104)
Q Consensus 92 gf~~~-i~~i~ 101 (104)
+|... +.+++
T Consensus 203 DfLLg~Lk~lL 213 (1294)
T PRK11131 203 DFILGYLKELL 213 (1294)
T ss_pred chHHHHHHHhh
Confidence 88653 44444
No 83
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=1.8e-07 Score=69.61 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=58.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHH---HHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++.++++++| |+.|+++.+++. .+.++..++|+.+..+.. ..+.++ .+|+|||+..+. ..+++
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~~ 93 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFKN 93 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-------CcccC
Confidence 3568999999 999999888764 346778888887755432 333444 799999998763 35789
Q ss_pred ccEEEEchhhhhh
Q psy18035 77 IQYVVFDEADRLF 89 (104)
Q Consensus 77 l~~lVlDEaD~ll 89 (104)
+.++|+||+|...
T Consensus 94 l~lIIVDEeh~~s 106 (505)
T TIGR00595 94 LGLIIVDEEHDSS 106 (505)
T ss_pred CCEEEEECCCccc
Confidence 9999999998764
No 84
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.47 E-value=1.4e-06 Score=62.33 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=58.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhcc----CCceEEEEEcCccHH--HH------------------HHHhcCCCcEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKF----TKLQSTCLLGGDSMD--NQ------------------FARLHASPDIVV 57 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~----~~~~~~~~~g~~~~~--~~------------------~~~l~~~~~IlV 57 (104)
+.++++++| |++|.++.++++... .+..+..+.|.+... .. .....+.|+|++
T Consensus 39 ~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~ill 118 (357)
T TIGR03158 39 ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILL 118 (357)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEE
Confidence 347899999 999999988887643 245555555542221 00 001124689999
Q ss_pred eCcHHHHHHHHhCC-----C---CCCCccEEEEchhhhhhh
Q psy18035 58 ATPGRFLHIVVEME-----L---KLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 58 ~TP~~l~~l~~~~~-----~---~l~~l~~lVlDEaD~ll~ 90 (104)
+||..+..+++... . .+.+++++|+||+|.+-.
T Consensus 119 T~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 119 TNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred ecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCc
Confidence 99999987765421 1 258999999999998653
No 85
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.44 E-value=4.2e-07 Score=68.23 Aligned_cols=87 Identities=21% Similarity=0.180 Sum_probs=68.8
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH----hcCCCcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR----LHASPDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~----l~~~~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+-+.|.|+| ||+|-|+.|++==...++++.+-+|-...+....- -...+||+|||-.-+-++++.+ -.+.++
T Consensus 261 g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdi 339 (830)
T COG1202 261 GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDI 339 (830)
T ss_pred CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Cccccc
Confidence 568899999 99999999986556678888888876554433211 1123799999999999999998 568999
Q ss_pred cEEEEchhhhhhhcC
Q psy18035 78 QYVVFDEADRLFEMG 92 (104)
Q Consensus 78 ~~lVlDEaD~ll~~g 92 (104)
-.+|+||.|.+-+..
T Consensus 340 GtVVIDEiHtL~deE 354 (830)
T COG1202 340 GTVVIDEIHTLEDEE 354 (830)
T ss_pred ceEEeeeeeeccchh
Confidence 999999999887643
No 86
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.44 E-value=8.8e-07 Score=69.29 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=68.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhCC------CC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEME------LK 73 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~~------~~ 73 (104)
.|.++-|++| ||.|-++.+..+-++.++++.++.++++..+...... +||++||..-+- ++++.+. .-
T Consensus 122 ~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~v 199 (913)
T PRK13103 122 SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKF 199 (913)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhc
Confidence 4678889999 9999999999999999999999998887766555544 899999998873 5554331 12
Q ss_pred CCCccEEEEchhhhhh
Q psy18035 74 LSSIQYVVFDEADRLF 89 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll 89 (104)
.+.+.+.|+||+|.+|
T Consensus 200 qr~l~~aIVDEvDsiL 215 (913)
T PRK13103 200 QRELNFAVIDEVDSIL 215 (913)
T ss_pred ccccceeEechhhhee
Confidence 3889999999999986
No 87
>KOG0354|consensus
Probab=98.38 E-value=7.2e-07 Score=68.41 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=66.9
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCC-CCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK-LSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~-l~~l~~ 79 (104)
.+-+++++|| |..|....++.++.. .+.....||.........+-..+++++.||.-+.+.+.++..+ ++.+.+
T Consensus 105 p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~ 182 (746)
T KOG0354|consen 105 PKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSL 182 (746)
T ss_pred CcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEE
Confidence 3468999999 666655777777654 4555556665444444456667899999999999888876554 699999
Q ss_pred EEEchhhhhhhc-CcHHHHH
Q psy18035 80 VVFDEADRLFEM-GFDVEQQ 98 (104)
Q Consensus 80 lVlDEaD~ll~~-gf~~~i~ 98 (104)
+|+||||+-... .|..-++
T Consensus 183 iv~DE~Hra~kn~~Y~~Vmr 202 (746)
T KOG0354|consen 183 IVFDECHRTSKNHPYNNIMR 202 (746)
T ss_pred EEEcccccccccccHHHHHH
Confidence 999999998644 3544443
No 88
>KOG0952|consensus
Probab=98.37 E-value=6.6e-07 Score=70.49 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=69.4
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCC---CCCCC
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME---LKLSS 76 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~---~~l~~ 76 (104)
.+..+.++++| ||..+.+-+.+=....++++.-++|++...+.. -..++|+|+||++.--..+... -.++.
T Consensus 162 k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~ 238 (1230)
T KOG0952|consen 162 KDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSL 238 (1230)
T ss_pred cCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhh
Confidence 46789999999 998887766655556789999999998765543 2248999999998765444432 22689
Q ss_pred ccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 77 IQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 77 l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
++++++||.|.|-|. -.+-++.|+
T Consensus 239 V~LviIDEVHlLhd~-RGpvlEtiV 262 (1230)
T KOG0952|consen 239 VRLVIIDEVHLLHDD-RGPVLETIV 262 (1230)
T ss_pred eeeEEeeeehhhcCc-ccchHHHHH
Confidence 999999999977544 344555544
No 89
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.17 E-value=3.2e-06 Score=68.52 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=40.7
Q ss_pred CCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhh-hhhhcCcHHH-HHhhh
Q psy18035 51 ASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEAD-RLFEMGFDVE-QQSPC 101 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD-~ll~~gf~~~-i~~i~ 101 (104)
.+.+|.++|||+|+..+.+.. .+++++++|+|||| ++++.+|.-. +..++
T Consensus 155 ~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il 206 (1283)
T TIGR01967 155 SNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLL 206 (1283)
T ss_pred CCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHH
Confidence 457899999999998887654 48999999999999 6999887654 45444
No 90
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.01 E-value=4.6e-05 Score=60.48 Aligned_cols=95 Identities=14% Similarity=0.220 Sum_probs=65.7
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccCC-ceEEE-EEcCccHH---HHHHHhcCC-CcEEEeCcHHHHHHHHhCCCC
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFTK-LQSTC-LLGGDSMD---NQFARLHAS-PDIVVATPGRFLHIVVEMELK 73 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~~-~~~~~-~~g~~~~~---~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~ 73 (104)
..|-++.+++| |+.|+++-+++++...+ .++.. .++..+.+ +....+.+| .||+|+|.+-|.+-+..- .
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~ 200 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--S 200 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--c
Confidence 35679999999 99999999999986655 44444 34444433 334445555 999999998877655421 1
Q ss_pred CCCccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
-.+.+++.+|.+|-+|..+ ..+++++
T Consensus 201 ~~kFdfifVDDVDA~Lkas--kNvDriL 226 (1187)
T COG1110 201 KLKFDFIFVDDVDAILKAS--KNVDRLL 226 (1187)
T ss_pred ccCCCEEEEccHHHHHhcc--ccHHHHH
Confidence 1356799999999998765 4444443
No 91
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.98 E-value=2.3e-05 Score=60.49 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=67.7
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhCC------CC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEME------LK 73 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~~------~~ 73 (104)
.|-++-|++| ||.|-++.+..+-+++++++.++.++++..+..... .+||.-||...+- ++++.+. .-
T Consensus 118 ~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v 195 (764)
T PRK12326 118 QGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLV 195 (764)
T ss_pred cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhc
Confidence 4667889999 999999999999999999999999988866554444 4899999999876 5555432 22
Q ss_pred CCCccEEEEchhhhhh
Q psy18035 74 LSSIQYVVFDEADRLF 89 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll 89 (104)
.+...+.|+||+|-+|
T Consensus 196 ~R~~~faIVDEvDSiL 211 (764)
T PRK12326 196 SPNPDVAIIDEADSVL 211 (764)
T ss_pred CCccceeeecchhhhe
Confidence 4678899999999886
No 92
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.92 E-value=3.4e-05 Score=60.15 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=68.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhCC------CC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEME------LK 73 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~~------~~ 73 (104)
.|-++-|++| ||.|-++.+..+-+++++++.++.|+.+..+..... .+||.-||...+- ++++.+. .-
T Consensus 120 ~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v 197 (796)
T PRK12906 120 TGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMV 197 (796)
T ss_pred cCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhh
Confidence 4678889999 999999999999999999999999887776654444 5799999999887 6665532 12
Q ss_pred CCCccEEEEchhhhhh
Q psy18035 74 LSSIQYVVFDEADRLF 89 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll 89 (104)
.+...+-|+||+|-+|
T Consensus 198 ~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 198 QRPLNYAIVDEVDSIL 213 (796)
T ss_pred ccCcceeeeccchhee
Confidence 3678899999999886
No 93
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.85 E-value=8.4e-05 Score=57.22 Aligned_cols=92 Identities=18% Similarity=0.121 Sum_probs=58.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC-CCcEEEeCcHHHHHHHHhC--CCCCCCc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEM--ELKLSSI 77 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlV~TP~~l~~l~~~~--~~~l~~l 77 (104)
+.+++|+++| |..|..+.++.+..... .+..+...-...+.. ...|+|+|..++...+... ......-
T Consensus 292 ~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~ 365 (667)
T TIGR00348 292 KNPKVFFVVDRRELDYQLMKEFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRK 365 (667)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCC
Confidence 4689999999 99999999998764211 111233333333433 3689999999998644321 1111111
Q ss_pred -cEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 78 -QYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 78 -~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
-++|+||||+.-..+|...+...+
T Consensus 366 ~~lvIvDEaHrs~~~~~~~~l~~~~ 390 (667)
T TIGR00348 366 EVVVIFDEAHRSQYGELAKNLKKAL 390 (667)
T ss_pred CEEEEEEcCccccchHHHHHHHhhC
Confidence 178999999987766766665443
No 94
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.79 E-value=7.7e-05 Score=56.51 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=60.5
Q ss_pred eEEEehhHHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEEE
Q psy18035 7 NYLISFPIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVVF 82 (104)
Q Consensus 7 ~~lil~PLa~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lVl 82 (104)
-.||+.||..=..+.+..+- ..++++..+.+..+..+.... +..+ .+++.-+|+|+..---.+.+.--.+..+|+
T Consensus 59 ~TLVVSPLiSLM~DQV~~l~-~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vI 137 (590)
T COG0514 59 LTLVVSPLISLMKDQVDQLE-AAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAI 137 (590)
T ss_pred CEEEECchHHHHHHHHHHHH-HcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEe
Confidence 47888882222223333332 235777777777665544333 3444 799999999988322222233567789999
Q ss_pred chhhhhhhcC--cHHHHHhhh
Q psy18035 83 DEADRLFEMG--FDVEQQSPC 101 (104)
Q Consensus 83 DEaD~ll~~g--f~~~i~~i~ 101 (104)
||||++.++| |+++-..+-
T Consensus 138 DEAHCiSqWGhdFRP~Y~~lg 158 (590)
T COG0514 138 DEAHCISQWGHDFRPDYRRLG 158 (590)
T ss_pred chHHHHhhcCCccCHhHHHHH
Confidence 9999999997 988877653
No 95
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.77 E-value=8.8e-05 Score=50.85 Aligned_cols=83 Identities=20% Similarity=0.154 Sum_probs=50.8
Q ss_pred eEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC---CCCCCCccEEE
Q psy18035 7 NYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM---ELKLSSIQYVV 81 (104)
Q Consensus 7 ~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~---~~~l~~l~~lV 81 (104)
.+||++| +..|=.+++.++.....+++....|+..............+++|+|...+....... .+.--+...+|
T Consensus 60 ~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vI 139 (299)
T PF00176_consen 60 KTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVI 139 (299)
T ss_dssp -EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEE
T ss_pred ceeEeeccchhhhhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEE
Confidence 4899999 778878888887754456666666555223222223345799999999888111000 11113478999
Q ss_pred Echhhhhh
Q psy18035 82 FDEADRLF 89 (104)
Q Consensus 82 lDEaD~ll 89 (104)
+||+|.+=
T Consensus 140 vDEaH~~k 147 (299)
T PF00176_consen 140 VDEAHRLK 147 (299)
T ss_dssp ETTGGGGT
T ss_pred Eecccccc
Confidence 99999994
No 96
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.75 E-value=7.7e-05 Score=57.85 Aligned_cols=88 Identities=16% Similarity=0.068 Sum_probs=57.4
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC--------CCCC
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM--------ELKL 74 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~--------~~~l 74 (104)
-++||||| |+.|-.+.+.++.......+..++|+.... ......|+|+|...+....... .+.-
T Consensus 299 k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~ 373 (732)
T TIGR00603 299 KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTN 373 (732)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhcc
Confidence 36899999 899999888887654455566666653221 1123689999998775332211 1222
Q ss_pred CCccEEEEchhhhhhhcCcHHHHH
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQ 98 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~ 98 (104)
....++|+||+|.+-...|..-+.
T Consensus 374 ~~~gLII~DEvH~lpA~~fr~il~ 397 (732)
T TIGR00603 374 REWGLILLDEVHVVPAAMFRRVLT 397 (732)
T ss_pred ccCCEEEEEccccccHHHHHHHHH
Confidence 456799999999986655654433
No 97
>KOG0385|consensus
Probab=97.68 E-value=0.00013 Score=56.59 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=53.7
Q ss_pred CCeeEEEehhHHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHH--hcC-CCcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 4 ANINYLISFPIVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFAR--LHA-SPDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~PLa~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~--l~~-~~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
.||. ||++|+.. ..++++++.+++ ++++.+++|+........+ +.. ..+|+|+|-...+.- +..+.=-+.+|
T Consensus 217 ~GPf-LVi~P~St-L~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~y 292 (971)
T KOG0385|consen 217 PGPF-LVIAPKST-LDNWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRY 292 (971)
T ss_pred CCCe-EEEeeHhh-HHHHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceE
Confidence 4554 78899111 123666666664 6888888888754433322 222 479999997776632 23333457889
Q ss_pred EEEchhhhhhhc
Q psy18035 80 VVFDEADRLFEM 91 (104)
Q Consensus 80 lVlDEaD~ll~~ 91 (104)
+|+||||++=..
T Consensus 293 lvIDEaHRiKN~ 304 (971)
T KOG0385|consen 293 LVIDEAHRIKNE 304 (971)
T ss_pred EEechhhhhcch
Confidence 999999998543
No 98
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.63 E-value=0.00092 Score=46.29 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhCCC------CCCCccEEEEchhh
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMEL------KLSSIQYVVFDEAD 86 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~~~------~l~~l~~lVlDEaD 86 (104)
||..=++.+..+-+.+++++....++++..+..... .++|+-||...+. +.++.... -.+...+.++||+|
T Consensus 130 LA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 130 LAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred HhhccHHHHHHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 999999999999999999999999998865544333 3689999999988 66654321 14788999999999
Q ss_pred hhh
Q psy18035 87 RLF 89 (104)
Q Consensus 87 ~ll 89 (104)
-+|
T Consensus 208 s~L 210 (266)
T PF07517_consen 208 SIL 210 (266)
T ss_dssp HHT
T ss_pred eEE
Confidence 987
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.57 E-value=0.00016 Score=58.51 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=52.3
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh-----CCCCCCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-----MELKLSS 76 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~-----~~~~l~~ 76 (104)
..++|+|+| |+.|..+.|+.+.-........+++....... .......|+|+|..++...+.. ....+.+
T Consensus 463 ~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~ 540 (1123)
T PRK11448 463 FRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQ 540 (1123)
T ss_pred cCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCc
Confidence 468999999 99999999987642222111111211111111 1123478999999998865432 1245678
Q ss_pred ccEEEEchhhhhh
Q psy18035 77 IQYVVFDEADRLF 89 (104)
Q Consensus 77 l~~lVlDEaD~ll 89 (104)
..++|+||||+-.
T Consensus 541 fdlIIiDEaHRs~ 553 (1123)
T PRK11448 541 YDCIIVDEAHRGY 553 (1123)
T ss_pred ccEEEEECCCCCC
Confidence 8899999999963
No 100
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.53 E-value=0.00047 Score=50.77 Aligned_cols=44 Identities=34% Similarity=0.427 Sum_probs=36.4
Q ss_pred CCcEEEeCcHHHHHHHHh---C---CCCCCCccEEEEchhhhhhhcCcHH
Q psy18035 52 SPDIVVATPGRFLHIVVE---M---ELKLSSIQYVVFDEADRLFEMGFDV 95 (104)
Q Consensus 52 ~~~IlV~TP~~l~~l~~~---~---~~~l~~l~~lVlDEaD~ll~~gf~~ 95 (104)
+.|||||+|--|...+.. + .-.++.+..+|+|.||.|+-++|+.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H 180 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH 180 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH
Confidence 479999999999988874 1 2238999999999999999887653
No 101
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.50 E-value=0.0011 Score=50.91 Aligned_cols=39 Identities=15% Similarity=0.023 Sum_probs=29.8
Q ss_pred CCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhh
Q psy18035 52 SPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 52 ~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~ 90 (104)
.+||+|++..-|...++.+.--+....++|+||||.+-+
T Consensus 182 ~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 182 RCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred cCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 469999999888876655432356689999999999954
No 102
>KOG0351|consensus
Probab=97.49 E-value=0.00052 Score=54.65 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=65.2
Q ss_pred eeEEEehhHHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC---CcEEEeCcHHHHH--HHHhCCCCCCC-
Q psy18035 6 INYLISFPIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS---PDIVVATPGRFLH--IVVEMELKLSS- 76 (104)
Q Consensus 6 ~~~lil~PLa~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~---~~IlV~TP~~l~~--l~~~~~~~l~~- 76 (104)
.-.+|+.||..=+...+..+ ...+++...+.++....++... +.++ .+|+--||+++.. .+.....++..
T Consensus 305 gitvVISPL~SLm~DQv~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~ 383 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYAR 383 (941)
T ss_pred CceEEeccHHHHHHHHHHhh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCC
Confidence 36789999555556666666 3467888888888777644333 3444 7999999999883 22222334444
Q ss_pred --ccEEEEchhhhhhhcC--cHHHHHhh
Q psy18035 77 --IQYVVFDEADRLFEMG--FDVEQQSP 100 (104)
Q Consensus 77 --l~~lVlDEaD~ll~~g--f~~~i~~i 100 (104)
+..+|+||||+...+| |+++=+++
T Consensus 384 ~~lal~vIDEAHCVSqWgHdFRp~Yk~l 411 (941)
T KOG0351|consen 384 GLLALFVIDEAHCVSQWGHDFRPSYKRL 411 (941)
T ss_pred CeeEEEEecHHHHhhhhcccccHHHHHH
Confidence 8999999999999886 77765443
No 103
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.44 E-value=0.00046 Score=43.86 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=53.2
Q ss_pred eEEEehh---HHHHHHHHHHHHhccCCceEE-----------EEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCC-
Q psy18035 7 NYLISFP---IVQQTFKFVKELGKFTKLQST-----------CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME- 71 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~~~~~~~~-----------~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~- 71 (104)
++++++| |+.|..+.+..+......... ..............-....++++.|..++........
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 131 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKK 131 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccc
Confidence 6899999 999999988766543211100 0111111122223334568999999999997765422
Q ss_pred ----------CCCCCccEEEEchhhhhhhcC
Q psy18035 72 ----------LKLSSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 72 ----------~~l~~l~~lVlDEaD~ll~~g 92 (104)
.......++|+||||..-+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 132 IDESARRSYKLLKNKFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp ------GCHHGGGGSESEEEEETGGCTHHHH
T ss_pred cccchhhhhhhccccCCEEEEehhhhcCCHH
Confidence 123466799999999987664
No 104
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.00014 Score=58.04 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=62.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++-++++.+| |.+|.++.+...-....-.+.+.+|+..... ...++|.|-.-|..++..+...+.++.++
T Consensus 161 ~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~V 233 (1041)
T COG4581 161 DGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWV 233 (1041)
T ss_pred cCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceE
Confidence 4667999999 9999999777432211223455566654433 37899999999999999998889999999
Q ss_pred EEchhhhhhhc
Q psy18035 81 VFDEADRLFEM 91 (104)
Q Consensus 81 VlDEaD~ll~~ 91 (104)
|+||.|.|-|.
T Consensus 234 iFDEvHyi~D~ 244 (1041)
T COG4581 234 VFDEVHYIGDR 244 (1041)
T ss_pred EEEeeeecccc
Confidence 99999999876
No 105
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.42 E-value=0.00057 Score=54.04 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=64.4
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhC------CCCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEM------ELKL 74 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~------~~~l 74 (104)
|..+-|+++ ||..=.+++..+-+++++++.++.++++..+.... -.+||+.||+..+- +.++.+ ..-.
T Consensus 126 GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vq 203 (939)
T PRK12902 126 GKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQ 203 (939)
T ss_pred CCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhccccccccc
Confidence 455667777 99999999999999999999999887766554333 36899999999984 433322 2335
Q ss_pred CCccEEEEchhhhhh
Q psy18035 75 SSIQYVVFDEADRLF 89 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll 89 (104)
+.+.|.|+||+|-+|
T Consensus 204 R~~~faIVDEvDSIL 218 (939)
T PRK12902 204 RPFNYCVIDEVDSIL 218 (939)
T ss_pred CccceEEEeccccee
Confidence 788999999999886
No 106
>KOG3089|consensus
Probab=97.38 E-value=0.00037 Score=46.95 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=35.9
Q ss_pred HHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEEEch
Q psy18035 42 MDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVVFDE 84 (104)
Q Consensus 42 ~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDE 84 (104)
.+++.+.+.++ .++-||||+|+..+++++.+.+++++++|+|=
T Consensus 185 ~~~~~k~~k~~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 185 VQAQVKLLKKRVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred HHHHHHHHhhcceeEeecCcHHHHHHHHhcCCCCCcceeEEeec
Confidence 44555555554 78999999999999999999999999999984
No 107
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.36 E-value=0.0005 Score=54.14 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=65.8
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhCC------CCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEME------LKL 74 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~~------~~l 74 (104)
|-.+-|+++ ||.+-++++..+-+++++++.++.++++..+..... .+||.-||...+- +.++.+. .-.
T Consensus 117 G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~ 194 (870)
T CHL00122 117 GKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQ 194 (870)
T ss_pred CCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhc
Confidence 455667777 999999999999999999999998888876654444 3799999998776 5555432 124
Q ss_pred CCccEEEEchhhhhh
Q psy18035 75 SSIQYVVFDEADRLF 89 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll 89 (104)
+.+.|.|+||+|-+|
T Consensus 195 r~~~faIVDEvDSiL 209 (870)
T CHL00122 195 RPFNYCIIDEVDSIL 209 (870)
T ss_pred cccceeeeecchhhe
Confidence 678899999999886
No 108
>KOG0947|consensus
Probab=97.34 E-value=0.00025 Score=56.21 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=62.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.+.++++-+| |.+|-++.|++--..-+ +++|+..... ...++|.|-.-|..++.++.--.+++.++
T Consensus 339 h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~V 407 (1248)
T KOG0947|consen 339 HMTRTIYTSPIKALSNQKFRDFKETFGDVG----LLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFV 407 (1248)
T ss_pred hccceEecchhhhhccchHHHHHHhccccc----eeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceE
Confidence 4678999999 99999998886533222 6777764443 36899999999999999998888999999
Q ss_pred EEchhhhhhhc
Q psy18035 81 VFDEADRLFEM 91 (104)
Q Consensus 81 VlDEaD~ll~~ 91 (104)
|+||.|.+-|.
T Consensus 408 IFDEVHYiND~ 418 (1248)
T KOG0947|consen 408 IFDEVHYINDV 418 (1248)
T ss_pred EEeeeeecccc
Confidence 99999998655
No 109
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.26 E-value=0.0022 Score=50.63 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=31.7
Q ss_pred CCeeEEEehh---HHHHH-HHHHHHHhccCCceEEEEEcCcc
Q psy18035 4 ANINYLISFP---IVQQT-FKFVKELGKFTKLQSTCLLGGDS 41 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi-~~~~~~l~~~~~~~~~~~~g~~~ 41 (104)
++.+++|++| |++|+ .+.+..+.+..++++.++.|+.+
T Consensus 290 ~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~~ 331 (820)
T PRK07246 290 DQRQIIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGPQN 331 (820)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECCcc
Confidence 3678999999 99999 57899999888888887777643
No 110
>KOG0951|consensus
Probab=97.25 E-value=0.00051 Score=55.91 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=65.5
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCC-CC-CCCccE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LK-LSSIQY 79 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~-~~-l~~l~~ 79 (104)
..+.++++| |++.....+++-...+++++.-.+|+.....+.- .+.+++||||.+---.-+++. .. .+-++.
T Consensus 364 ~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrL 440 (1674)
T KOG0951|consen 364 PFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRL 440 (1674)
T ss_pred cceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccchhhhhhcccCchhHHHHHHH
Confidence 357899999 8888888777777788999999999876443321 246899999999765555432 22 357889
Q ss_pred EEEchhhhhhhcCcHHHHHhh
Q psy18035 80 VVFDEADRLFEMGFDVEQQSP 100 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i 100 (104)
+|+||.|.+-|. -.+.+++|
T Consensus 441 lIIDEIHLLhDd-RGpvLESI 460 (1674)
T KOG0951|consen 441 LIIDEIHLLHDD-RGPVLESI 460 (1674)
T ss_pred Hhhhhhhhcccc-cchHHHHH
Confidence 999999977443 23444443
No 111
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.24 E-value=0.0013 Score=52.95 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=51.1
Q ss_pred eEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH--h-cCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 7 NYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR--L-HASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 7 ~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~--l-~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
..||+|| +..|=.+++++++ ..+++..++|.......... + ....+|+|+|...+..... .+.--+..++|
T Consensus 221 p~LIVvP~SlL~nW~~Ei~kw~--p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VI 296 (1033)
T PLN03142 221 PHMVVAPKSTLGNWMNEIRRFC--PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYII 296 (1033)
T ss_pred CEEEEeChHHHHHHHHHHHHHC--CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEE
Confidence 4799999 7777666666554 24666667765543322211 2 2347999999888764322 22223567999
Q ss_pred Echhhhhhhc
Q psy18035 82 FDEADRLFEM 91 (104)
Q Consensus 82 lDEaD~ll~~ 91 (104)
+||||++=+.
T Consensus 297 vDEAHrIKN~ 306 (1033)
T PLN03142 297 IDEAHRIKNE 306 (1033)
T ss_pred EcCccccCCH
Confidence 9999998543
No 112
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.13 E-value=0.0024 Score=49.39 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=52.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHH---HHhcCC-CcEEEeCcHHHHHHHHhCC-CCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHAS-PDIVVATPGRFLHIVVEME-LKLS 75 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~IlV~TP~~l~~l~~~~~-~~l~ 75 (104)
.|-++|||+| |..|+.+.+++... +-.+..++++.+..+.. ....+| ..|+|||- +.. ..++
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR--------SAvFaP~~ 256 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR--------SAVFAPVE 256 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc--------eeEEeccC
Confidence 3668999999 99999888875432 25677788777655433 334455 89999993 332 3589
Q ss_pred CccEEEEchhh
Q psy18035 76 SIQYVVFDEAD 86 (104)
Q Consensus 76 ~l~~lVlDEaD 86 (104)
++..+|+||=|
T Consensus 257 ~LgLIIvdEEh 267 (665)
T PRK14873 257 DLGLVAIWDDG 267 (665)
T ss_pred CCCEEEEEcCC
Confidence 99999999865
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.01 E-value=0.0017 Score=50.63 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCC-CCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEME-LKLS 75 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~-~~l~ 75 (104)
.|-++|+|+| |-.|+.+.|+.. .+.++.+++++.+..+.... ..+| ..|+||| ++.- ..++
T Consensus 244 ~GkqvLvLVPEI~Ltpq~~~rf~~r---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt--------RSAlF~Pf~ 312 (730)
T COG1198 244 QGKQVLVLVPEIALTPQLLARFKAR---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT--------RSALFLPFK 312 (730)
T ss_pred cCCEEEEEeccccchHHHHHHHHHH---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe--------chhhcCchh
Confidence 4679999999 888988777754 44778888888765443333 3334 8999999 3332 3489
Q ss_pred CccEEEEchhhh
Q psy18035 76 SIQYVVFDEADR 87 (104)
Q Consensus 76 ~l~~lVlDEaD~ 87 (104)
++..+|+||=|.
T Consensus 313 ~LGLIIvDEEHD 324 (730)
T COG1198 313 NLGLIIVDEEHD 324 (730)
T ss_pred hccEEEEecccc
Confidence 999999999764
No 114
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=96.97 E-value=0.0013 Score=52.59 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=45.2
Q ss_pred eeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHH--HhcCCCcEEEeCcHHHHHHH-HhCCCCCCCccEE
Q psy18035 6 INYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA--RLHASPDIVVATPGRFLHIV-VEMELKLSSIQYV 80 (104)
Q Consensus 6 ~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~IlV~TP~~l~~l~-~~~~~~l~~l~~l 80 (104)
-++||+|| |..|=..+ +.+.+++...++.++........ .-....+++|+|-+.+...- ....+.-...+++
T Consensus 200 ~rvLIVvP~sL~~QW~~E---l~~kF~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlv 276 (956)
T PRK04914 200 ERVLILVPETLQHQWLVE---MLRRFNLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLL 276 (956)
T ss_pred CcEEEEcCHHHHHHHHHH---HHHHhCCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEE
Confidence 37999999 88775444 44444555554443321111000 00113578888877665311 0111222467899
Q ss_pred EEchhhhhh
Q psy18035 81 VFDEADRLF 89 (104)
Q Consensus 81 VlDEaD~ll 89 (104)
|+||||.+-
T Consensus 277 IvDEAH~lk 285 (956)
T PRK04914 277 VVDEAHHLV 285 (956)
T ss_pred EEechhhhc
Confidence 999999996
No 115
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.66 E-value=0.0061 Score=38.67 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=42.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++.+.|||+| ++..+++.++ ..+++...-. ... ....+.-|=+.|-+.+.+.+-+ .....+.+++
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~----~~~~~~~t~~----~~~---~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~I 99 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALK----GLPVRFHTNA----RMR---THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVI 99 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTT----TSSEEEESTT----SS-------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEE
T ss_pred ccCeEEEecccHHHHHHHHHHHh----cCCcccCcee----eec---cccCCCcccccccHHHHHHhcC-cccccCccEE
Confidence 4678999999 7776665554 3334332111 101 1123345667888888776655 5557899999
Q ss_pred EEchhhhh
Q psy18035 81 VFDEADRL 88 (104)
Q Consensus 81 VlDEaD~l 88 (104)
|+||+|..
T Consensus 100 I~DEcH~~ 107 (148)
T PF07652_consen 100 IMDECHFT 107 (148)
T ss_dssp EECTTT--
T ss_pred EEeccccC
Confidence 99999975
No 116
>KOG0352|consensus
Probab=96.58 E-value=0.0077 Score=44.64 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=56.9
Q ss_pred eEEEehhHHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh------cCCCcEEEeCcHHHH-----HHHHhCCCCCC
Q psy18035 7 NYLISFPIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL------HASPDIVVATPGRFL-----HIVVEMELKLS 75 (104)
Q Consensus 7 ~~lil~PLa~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l------~~~~~IlV~TP~~l~-----~l~~~~~~~l~ 75 (104)
..||+.||..-|...+..+.+ +++.+..+.+..+..+..+.+ +....++--||+.-. ++++ +-.+-.
T Consensus 63 ITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~ 140 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRD 140 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhc
Confidence 678999955556666666643 345555555555544433322 234688999998754 2222 222346
Q ss_pred CccEEEEchhhhhhhcC--cHHHHHh
Q psy18035 76 SIQYVVFDEADRLFEMG--FDVEQQS 99 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~g--f~~~i~~ 99 (104)
.++|+|+||||+.-.+| |.+|-.+
T Consensus 141 ~L~Y~vVDEAHCVSQWGHDFRPDYL~ 166 (641)
T KOG0352|consen 141 VLRYIVVDEAHCVSQWGHDFRPDYLT 166 (641)
T ss_pred eeeeEEechhhhHhhhccccCcchhh
Confidence 68899999999998886 7766443
No 117
>KOG2340|consensus
Probab=96.58 E-value=0.0059 Score=46.14 Aligned_cols=44 Identities=30% Similarity=0.490 Sum_probs=36.0
Q ss_pred CCcEEEeCcHHHHHHHHhC-----CCC-CCCccEEEEchhhhhhhcCcHH
Q psy18035 52 SPDIVVATPGRFLHIVVEM-----ELK-LSSIQYVVFDEADRLFEMGFDV 95 (104)
Q Consensus 52 ~~~IlV~TP~~l~~l~~~~-----~~~-l~~l~~lVlDEaD~ll~~gf~~ 95 (104)
..||+||+|--|.-++.+. .++ ++.+.++|+|-||.|+-.+|+.
T Consensus 385 ~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh 434 (698)
T KOG2340|consen 385 KSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH 434 (698)
T ss_pred ccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH
Confidence 4799999999988888632 233 7999999999999999888763
No 118
>KOG0389|consensus
Probab=96.54 E-value=0.0031 Score=49.33 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=54.0
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhc-C---CCcEEEeCcHHHHHHHHhCC---
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLH-A---SPDIVVATPGRFLHIVVEME--- 71 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~-~---~~~IlV~TP~~l~~l~~~~~--- 71 (104)
.+||. ||+|| | .++.+++.+++ .+++...||.....++++... . +.+|+++|-.-.. +..
T Consensus 447 ~~gpH-LVVvPsSTl----eNWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~----~~kdDR 517 (941)
T KOG0389|consen 447 NPGPH-LVVVPSSTL----ENWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAA----SSKDDR 517 (941)
T ss_pred CCCCc-EEEecchhH----HHHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeeccc----CChHHH
Confidence 34454 77888 5 45778888875 588888999887666555532 2 4799999943222 221
Q ss_pred --CCCCCccEEEEchhhhhhhcC
Q psy18035 72 --LKLSSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 72 --~~l~~l~~lVlDEaD~ll~~g 92 (104)
+.-.++.+.|+||+|.|=+.+
T Consensus 518 sflk~~~~n~viyDEgHmLKN~~ 540 (941)
T KOG0389|consen 518 SFLKNQKFNYVIYDEGHMLKNRT 540 (941)
T ss_pred HHHHhccccEEEecchhhhhccc
Confidence 223556799999999886554
No 119
>KOG0387|consensus
Probab=96.53 E-value=0.0084 Score=47.07 Aligned_cols=83 Identities=23% Similarity=0.211 Sum_probs=50.4
Q ss_pred eeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccH--------HHHHHH-hc----CCCcEEEeCcHHHHHHHHhC
Q psy18035 6 INYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSM--------DNQFAR-LH----ASPDIVVATPGRFLHIVVEM 70 (104)
Q Consensus 6 ~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~--------~~~~~~-l~----~~~~IlV~TP~~l~~l~~~~ 70 (104)
-.|||+|| +..|=.+++..+. +.+++..++|..+. ...... |. ...+|+++|-..+.- ...
T Consensus 256 ~paLIVCP~Tii~qW~~E~~~w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d 331 (923)
T KOG0387|consen 256 KPALIVCPATIIHQWMKEFQTWW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGD 331 (923)
T ss_pred CceEEEccHHHHHHHHHHHHHhC--cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCc
Confidence 35899999 8888666666553 46788888765442 011111 11 235788888433221 122
Q ss_pred CCCCCCccEEEEchhhhhhhcC
Q psy18035 71 ELKLSSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 71 ~~~l~~l~~lVlDEaD~ll~~g 92 (104)
.+.--...++|+||+|++-..+
T Consensus 332 ~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 332 DLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred ccccccccEEEecCcccccCCc
Confidence 3444667899999999986543
No 120
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.51 E-value=0.0065 Score=44.83 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=50.4
Q ss_pred eEEEehh---HHHHHHHHHHHHhccCCce-EEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEE
Q psy18035 7 NYLISFP---IVQQTFKFVKELGKFTKLQ-STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVF 82 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVl 82 (104)
.+||||| |+.|-.+.+.... ... ..-.+||...... . ..|.|+|=..+...-....+..+...++|+
T Consensus 82 ~~Lvlv~~~~L~~Qw~~~~~~~~---~~~~~~g~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~ 152 (442)
T COG1061 82 STLVLVPTKELLDQWAEALKKFL---LLNDEIGIYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIF 152 (442)
T ss_pred CEEEEECcHHHHHHHHHHHHHhc---CCccccceecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEE
Confidence 4999999 9999765444433 332 1222333222111 0 369999987777532112233346889999
Q ss_pred chhhhhhhcCcHHHHHh
Q psy18035 83 DEADRLFEMGFDVEQQS 99 (104)
Q Consensus 83 DEaD~ll~~gf~~~i~~ 99 (104)
||+|.+-...|..-.+.
T Consensus 153 DE~Hh~~a~~~~~~~~~ 169 (442)
T COG1061 153 DEVHHLPAPSYRRILEL 169 (442)
T ss_pred EccccCCcHHHHHHHHh
Confidence 99999988776654443
No 121
>PRK09694 helicase Cas3; Provisional
Probab=96.39 E-value=0.014 Score=46.62 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=52.8
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhcc--CCceEEEEEcCccHHHH---------------------HHHhc---CC---
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKF--TKLQSTCLLGGDSMDNQ---------------------FARLH---AS--- 52 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~--~~~~~~~~~g~~~~~~~---------------------~~~l~---~~--- 52 (104)
..+.++..| .++|+++.++++.+. ...++.+.+|+...... ..++. +.
T Consensus 331 ~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~ll 410 (878)
T PRK09694 331 ADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFL 410 (878)
T ss_pred CCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhc
Confidence 357888899 899999988865432 23456677766532111 12222 11
Q ss_pred CcEEEeCcHHHH-HHHHhCCCCCCCc----cEEEEchhhhh
Q psy18035 53 PDIVVATPGRFL-HIVVEMELKLSSI----QYVVFDEADRL 88 (104)
Q Consensus 53 ~~IlV~TP~~l~-~l~~~~~~~l~~l----~~lVlDEaD~l 88 (104)
.+++|||+-.++ ..+..++..++.. +.+|+||+|-.
T Consensus 411 api~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy 451 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY 451 (878)
T ss_pred CCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC
Confidence 699999998887 4444333333332 48999999976
No 122
>KOG0948|consensus
Probab=95.95 E-value=0.017 Score=45.38 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=58.5
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
.-|+|+-.| |.+|-|+++..=-+. +.+.+|+..... .+..+|.|-.-|..++..|.--++.+-++|
T Consensus 172 kQRVIYTSPIKALSNQKYREl~~EF~D----VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVI 240 (1041)
T KOG0948|consen 172 KQRVIYTSPIKALSNQKYRELLEEFKD----VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVI 240 (1041)
T ss_pred cCeEEeeChhhhhcchhHHHHHHHhcc----cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEE
Confidence 347788888 999999877643222 344556554333 367999999999999998887789999999
Q ss_pred Echhhhhhhc
Q psy18035 82 FDEADRLFEM 91 (104)
Q Consensus 82 lDEaD~ll~~ 91 (104)
+||.|.|-|.
T Consensus 241 FDEIHYMRDk 250 (1041)
T KOG0948|consen 241 FDEIHYMRDK 250 (1041)
T ss_pred eeeehhcccc
Confidence 9999999876
No 123
>KOG0949|consensus
Probab=95.87 E-value=0.0097 Score=47.88 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=54.2
Q ss_pred eEEEehh---HHHHHHHHHHHHh-ccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC---CCCCCCccE
Q psy18035 7 NYLISFP---IVQQTFKFVKELG-KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM---ELKLSSIQY 79 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~-~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~---~~~l~~l~~ 79 (104)
-++.++| |..|+...+..-- ..+-.+...+.|....+.++. .-+|+|+|+-|.-+-.++-+. ....+++++
T Consensus 558 VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRy 635 (1330)
T KOG0949|consen 558 VVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRY 635 (1330)
T ss_pred EEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceE
Confidence 3577888 8888877665433 222223223334333333322 225899999999999888773 345799999
Q ss_pred EEEchhhhhhh
Q psy18035 80 VVFDEADRLFE 90 (104)
Q Consensus 80 lVlDEaD~ll~ 90 (104)
+|+||.|.+=.
T Consensus 636 iIfDEVH~iG~ 646 (1330)
T KOG0949|consen 636 IIFDEVHLIGN 646 (1330)
T ss_pred EEechhhhccc
Confidence 99999998843
No 124
>KOG4439|consensus
Probab=95.87 E-value=0.005 Score=47.84 Aligned_cols=84 Identities=20% Similarity=0.149 Sum_probs=55.3
Q ss_pred eEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHH----HHHhC-CC-CCCC--
Q psy18035 7 NYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLH----IVVEM-EL-KLSS-- 76 (104)
Q Consensus 7 ~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~----l~~~~-~~-~l~~-- 76 (104)
..||+|| |..|=..++.+-...-.+++.+++|.....-..+.|+ ..||+|+|-.-+.. -.+.+ .. .+-.
T Consensus 385 ~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~-~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~ 463 (901)
T KOG4439|consen 385 KTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKREISAKELR-KYDVVITTYNLVANKPDDELEEGKNSSPLARIA 463 (901)
T ss_pred CeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccccCCHHHHh-hcceEEEeeeccccCCchhhhcccCccHHHHhh
Confidence 4799999 9999888887666666789888888765444444444 47999999544333 01111 10 1222
Q ss_pred ccEEEEchhhhhhhc
Q psy18035 77 IQYVVFDEADRLFEM 91 (104)
Q Consensus 77 l~~lVlDEaD~ll~~ 91 (104)
...+|+||||.+-+.
T Consensus 464 W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 464 WSRVILDEAHNIRNS 478 (901)
T ss_pred HHHhhhhhhhhhccc
Confidence 456899999988655
No 125
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.72 E-value=0.084 Score=37.75 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHH-HhcCC-----CcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhh
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA-RLHAS-----PDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADR 87 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~-~l~~~-----~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ 87 (104)
||..+...+.. ...+.+...++++.+...... .+... ....+..|..+..............+.+|+||||+
T Consensus 17 la~~l~~~l~~--~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 17 LALNLAKELQN--SEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQR 94 (352)
T ss_pred HHHHHHHHhhc--cccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHh
Confidence 56655554411 112344555555554433222 23222 13344555555443332234467889999999999
Q ss_pred hhhcC-------cHHHHHhhhhc
Q psy18035 88 LFEMG-------FDVEQQSPCDT 103 (104)
Q Consensus 88 ll~~g-------f~~~i~~i~~~ 103 (104)
|.+.+ ..+++..|++.
T Consensus 95 l~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 95 LRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhccccccccccHHHHHHHHhc
Confidence 99842 35777777664
No 126
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=95.29 E-value=0.065 Score=42.83 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=61.2
Q ss_pred EEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhCC------CCCCCc
Q psy18035 8 YLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEME------LKLSSI 77 (104)
Q Consensus 8 ~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~~------~~l~~l 77 (104)
+=|++. ||..=.+++..+-+++|+++.+...+++..+..... .+||.-||...+- ++++.+. .-.+.+
T Consensus 122 VhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~ 199 (925)
T PRK12903 122 VIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGL 199 (925)
T ss_pred eEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCccc
Confidence 344444 999888888888889999999998877766554443 4899999999877 6666542 124778
Q ss_pred cEEEEchhhhhh
Q psy18035 78 QYVVFDEADRLF 89 (104)
Q Consensus 78 ~~lVlDEaD~ll 89 (104)
.|.|+||+|-+|
T Consensus 200 ~faIVDEVDSIL 211 (925)
T PRK12903 200 NFCLIDEVDSIL 211 (925)
T ss_pred ceeeeccchhee
Confidence 899999999886
No 127
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.26 E-value=0.08 Score=42.83 Aligned_cols=91 Identities=22% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhC-CCCCCCcc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEM-ELKLSSIQ 78 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~-~~~l~~l~ 78 (104)
..|.+++++= |-.|+.++++.+........ ...+..+-.+.+..+ -.|+|+|=.++....... ....++-.
T Consensus 302 ~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ 377 (962)
T COG0610 302 KNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKN 377 (962)
T ss_pred CCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCc
Confidence 3578888888 99999999999987654432 344555555556555 489999999999888664 22233333
Q ss_pred -EEEEchhhhhhhcCcHHHHH
Q psy18035 79 -YVVFDEADRLFEMGFDVEQQ 98 (104)
Q Consensus 79 -~lVlDEaD~ll~~gf~~~i~ 98 (104)
.+++||||+-=..-....+.
T Consensus 378 ivvI~DEaHRSQ~G~~~~~~~ 398 (962)
T COG0610 378 VVVIIDEAHRSQYGELAKLLK 398 (962)
T ss_pred EEEEEechhhccccHHHHHHH
Confidence 56899999864433333333
No 128
>KOG1001|consensus
Probab=95.24 E-value=0.032 Score=43.44 Aligned_cols=77 Identities=22% Similarity=0.192 Sum_probs=50.0
Q ss_pred CeeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCcc--EE
Q psy18035 5 NINYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ--YV 80 (104)
Q Consensus 5 ~~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~--~l 80 (104)
+--.||++| +-.|=..++.+..+...+.+...+| ....... .+..++++.|++.+.. ..+..++ .+
T Consensus 189 ~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g---r~kd~~e-l~~~dVVltTy~il~~------~~l~~i~w~Ri 258 (674)
T KOG1001|consen 189 FKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG---RTKDKSE-LNSYDVVLTTYDILKN------SPLVKIKWLRI 258 (674)
T ss_pred cCceeEecchHHHHHHHHHHhccCCccceEEEEecc---cccccch-hcCCceEEeeHHHhhc------ccccceeEEEE
Confidence 345789999 7777666666666556677777777 2222122 2357899999987764 2223344 45
Q ss_pred EEchhhhhhhc
Q psy18035 81 VFDEADRLFEM 91 (104)
Q Consensus 81 VlDEaD~ll~~ 91 (104)
|+|||+.+-..
T Consensus 259 ildea~~ikn~ 269 (674)
T KOG1001|consen 259 VLDEAHTIKNK 269 (674)
T ss_pred EeccccccCCc
Confidence 99999987544
No 129
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.15 E-value=0.14 Score=42.23 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=53.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+-+++|++| -+..+.+.+++.. .+.++..++|+++..+..+. .+++ .+|+||| +.+ ...+++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~--p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIi-erGIDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TII-ETGIDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chh-hcccccccC
Confidence 458899999 3444444444332 35788889999987654333 3344 8999999 443 456789999
Q ss_pred cEEEEchhhhh
Q psy18035 78 QYVVFDEADRL 88 (104)
Q Consensus 78 ~~lVlDEaD~l 88 (104)
+++|++.||.+
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999998853
No 130
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.10 E-value=0.19 Score=40.59 Aligned_cols=77 Identities=12% Similarity=0.175 Sum_probs=54.7
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++.+++|++| -+..+++.++++. .++++..++|+++..+..+. ..++ .+|+|+| +.+ ...+++.+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT-----~ii-e~GIDIp~ 730 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT-----TII-ETGIDIPN 730 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chh-hccccccc
Confidence 4568999999 4445555555432 46889999999886554433 3344 8999999 333 45678999
Q ss_pred ccEEEEchhhhh
Q psy18035 77 IQYVVFDEADRL 88 (104)
Q Consensus 77 l~~lVlDEaD~l 88 (104)
+.++|++.+|..
T Consensus 731 v~~VIi~~a~~~ 742 (926)
T TIGR00580 731 ANTIIIERADKF 742 (926)
T ss_pred CCEEEEecCCCC
Confidence 999999998864
No 131
>KOG0392|consensus
Probab=95.04 E-value=0.063 Score=44.31 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=51.1
Q ss_pred EEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchh
Q psy18035 8 YLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEA 85 (104)
Q Consensus 8 ~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEa 85 (104)
.||+|| |+--=..++++|..+ +++...+|+-..+...+.--++.+|+|+.-.-+.+-+. .+.=....|.|+||.
T Consensus 1034 SLIVCPsTLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEG 1109 (1549)
T KOG0392|consen 1034 SLIVCPSTLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEG 1109 (1549)
T ss_pred eEEECCchhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCc
Confidence 899999 877666666666554 56666677655555544444568999998654441110 111144569999999
Q ss_pred hhhhhc
Q psy18035 86 DRLFEM 91 (104)
Q Consensus 86 D~ll~~ 91 (104)
|.+=+.
T Consensus 1110 HVikN~ 1115 (1549)
T KOG0392|consen 1110 HVIKNS 1115 (1549)
T ss_pred ceecch
Confidence 987543
No 132
>KOG0951|consensus
Probab=94.94 E-value=0.13 Score=42.83 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=58.2
Q ss_pred CeeEEEehh----HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 5 NINYLISFP----IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P----La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
--+|+.++| -..|...+-+++.+..+.++..+.|..+.... +....+++|+||.+.-.+ + +...++++
T Consensus 1186 ~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~ 1257 (1674)
T KOG0951|consen 1186 IGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLF 1257 (1674)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceE
Confidence 458899999 44555667778888888888888777665443 233469999999998766 2 67889999
Q ss_pred EEchhhhhh
Q psy18035 81 VFDEADRLF 89 (104)
Q Consensus 81 VlDEaD~ll 89 (104)
+.||+|.+=
T Consensus 1258 i~d~lh~ig 1266 (1674)
T KOG0951|consen 1258 IVDELHLIG 1266 (1674)
T ss_pred eeehhhhhc
Confidence 999999764
No 133
>KOG0391|consensus
Probab=94.78 E-value=0.055 Score=44.72 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=45.6
Q ss_pred EEehh----HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH--hcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 9 LISFP----IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR--LHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 9 lil~P----La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~--l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
||++| |-. .-++++++ .++++...||.-......+. .+.+ .|+.|++-..+..-+. .+.=++.+|+|
T Consensus 669 LIVVpTsviLnW--EMElKRwc--PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLv 742 (1958)
T KOG0391|consen 669 LIVVPTSVILNW--EMELKRWC--PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLV 742 (1958)
T ss_pred eEEeechhhhhh--hHHHhhhC--CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceee
Confidence 67777 322 22455554 36888899987654433332 2222 5777776443333222 34457899999
Q ss_pred Echhhhhhh
Q psy18035 82 FDEADRLFE 90 (104)
Q Consensus 82 lDEaD~ll~ 90 (104)
+|||+.+=.
T Consensus 743 LDEaqnIKn 751 (1958)
T KOG0391|consen 743 LDEAQNIKN 751 (1958)
T ss_pred hhhhhhhcc
Confidence 999998843
No 134
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.72 E-value=0.21 Score=38.51 Aligned_cols=79 Identities=23% Similarity=0.362 Sum_probs=53.0
Q ss_pred CCeeEEEehh-H-------HHHHHHHHHHHhcc-CCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhC
Q psy18035 4 ANINYLISFP-I-------VQQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEM 70 (104)
Q Consensus 4 ~~~~~lil~P-L-------a~Qi~~~~~~l~~~-~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~ 70 (104)
++.+++|++| . .....+.++.+.+. .++++..++|+++..+.... .+++ .+|+|+|. . -..
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----v-ie~ 520 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----V-IEV 520 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----e-eec
Confidence 3568899999 2 12233334444332 56889999999886554433 3344 89999994 3 345
Q ss_pred CCCCCCccEEEEchhhhh
Q psy18035 71 ELKLSSIQYVVFDEADRL 88 (104)
Q Consensus 71 ~~~l~~l~~lVlDEaD~l 88 (104)
.+++.+++++|+..+++.
T Consensus 521 GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 521 GVDVPNATVMVIEDAERF 538 (630)
T ss_pred CcccCCCcEEEEeCCCcC
Confidence 678899999998888763
No 135
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.67 E-value=0.2 Score=39.81 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=48.4
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC-----CCCCCCc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-----ELKLSSI 77 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~-----~~~l~~l 77 (104)
-++|.|+= |..|.+..+..+...-... ..+. +.. ....++|.++|=.++..-+.+. .+.....
T Consensus 216 KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~-n~i~-~~~-------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~F 286 (875)
T COG4096 216 KRVLFLADRNALVDQAYGAFEDFLPFGTKM-NKIE-DKK-------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFF 286 (875)
T ss_pred heeeEEechHHHHHHHHHHHHHhCCCccce-eeee-ccc-------CCcceeEEEeehHHHHhhhhccccccccCCCCce
Confidence 35666666 7777777666654332111 1111 100 0114689999999999877655 3556779
Q ss_pred cEEEEchhhhhhhc
Q psy18035 78 QYVVFDEADRLFEM 91 (104)
Q Consensus 78 ~~lVlDEaD~ll~~ 91 (104)
+++|+||||+=.=.
T Consensus 287 DlIvIDEaHRgi~~ 300 (875)
T COG4096 287 DLIVIDEAHRGIYS 300 (875)
T ss_pred eEEEechhhhhHHh
Confidence 99999999986543
No 136
>KOG0384|consensus
Probab=94.45 E-value=0.078 Score=43.61 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCeeEEEehhHHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhc----C-----CCcEEEeCcHHHHHHHHhCCCCC
Q psy18035 4 ANINYLISFPIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----A-----SPDIVVATPGRFLHIVVEMELKL 74 (104)
Q Consensus 4 ~~~~~lil~PLa~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~----~-----~~~IlV~TP~~l~~l~~~~~~~l 74 (104)
.||. ||++||.. +.++-+++..+..+++.+..|.....+-++... . .++++++|=..++.-- ..+.-
T Consensus 420 ~gpf-lvvvplst-~~~W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~ 495 (1373)
T KOG0384|consen 420 HGPF-LVVVPLST-ITAWEREFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSK 495 (1373)
T ss_pred cCCe-EEEeehhh-hHHHHHHHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhcc
Confidence 3443 67888322 223445666666789999999887666555432 2 3789999976665321 12223
Q ss_pred CCccEEEEchhhhhh
Q psy18035 75 SSIQYVVFDEADRLF 89 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll 89 (104)
-+.+++++||||+|=
T Consensus 496 i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 496 IPWRYLLVDEAHRLK 510 (1373)
T ss_pred CCcceeeecHHhhcC
Confidence 356799999999995
No 137
>KOG0390|consensus
Probab=94.20 E-value=0.19 Score=39.80 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=52.6
Q ss_pred eeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccH--HHHHHHhcC---C--CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 6 INYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSM--DNQFARLHA---S--PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 6 ~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~--~~~~~~l~~---~--~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
-++||++| |..-=.++|.++.....+....++|+.+. ..+.+.+.- . --+++-+-..+.+.++ .+....
T Consensus 299 ~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~ 376 (776)
T KOG0390|consen 299 NKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIR 376 (776)
T ss_pred cccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCC
Confidence 46899999 87766666666654456788888888774 122222211 1 2344444444544444 444678
Q ss_pred ccEEEEchhhhhhhc
Q psy18035 77 IQYVVFDEADRLFEM 91 (104)
Q Consensus 77 l~~lVlDEaD~ll~~ 91 (104)
..++|+||+|++-+.
T Consensus 377 ~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 377 PGLLVCDEGHRLKNS 391 (776)
T ss_pred CCeEEECCCCCccch
Confidence 889999999998544
No 138
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.18 E-value=0.067 Score=42.54 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=39.5
Q ss_pred CCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhcCcHHHHHhh
Q psy18035 52 SPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEMGFDVEQQSP 100 (104)
Q Consensus 52 ~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~gf~~~i~~i 100 (104)
...|+++||.-+..-+-++.++++.+..+|+||||+..+..-+.-|-++
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rl 55 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRL 55 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHH
Confidence 4579999999999667778899999999999999999766544444443
No 139
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=93.86 E-value=0.3 Score=35.53 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=47.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.|-++.|-+| .+..++..+++- +.+..+.++||+++...+ ..++|+|--.++..-+ ..+++
T Consensus 143 ~G~~vciASPRvDVclEl~~Rlk~a--F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~l 206 (441)
T COG4098 143 QGGRVCIASPRVDVCLELYPRLKQA--FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLL 206 (441)
T ss_pred cCCeEEEecCcccchHHHHHHHHHh--hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEE
Confidence 3566777788 666666555542 345778889998765443 4789999777666433 45699
Q ss_pred EEchhhhh
Q psy18035 81 VFDEADRL 88 (104)
Q Consensus 81 VlDEaD~l 88 (104)
++||.|-.
T Consensus 207 iIDEVDAF 214 (441)
T COG4098 207 IIDEVDAF 214 (441)
T ss_pred EEeccccc
Confidence 99999975
No 140
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.77 E-value=0.43 Score=37.20 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=54.2
Q ss_pred CCeeEEEehh-----------HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcC-CCcEEEeCcHHHHHHHH
Q psy18035 4 ANINYLISFP-----------IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHA-SPDIVVATPGRFLHIVV 68 (104)
Q Consensus 4 ~~~~~lil~P-----------La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~-~~~IlV~TP~~l~~l~~ 68 (104)
.|-||-++|| -|...++.++ ..+.++++.+++|.++..+.... -++ ..||+|+|- +-
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~--~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT------VI 543 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELK--SFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT------VI 543 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHH--HHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee------EE
Confidence 4678999999 2334444444 22357889999999885544333 334 489999993 23
Q ss_pred hCCCCCCCccEEEEchhhhh
Q psy18035 69 EMELKLSSIQYVVFDEADRL 88 (104)
Q Consensus 69 ~~~~~l~~l~~lVlDEaD~l 88 (104)
.-.++..+-...||..|+++
T Consensus 544 EVGVdVPnATvMVIe~AERF 563 (677)
T COG1200 544 EVGVDVPNATVMVIENAERF 563 (677)
T ss_pred EecccCCCCeEEEEechhhh
Confidence 35678899999999999987
No 141
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.59 E-value=0.14 Score=40.81 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=28.5
Q ss_pred CCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhc
Q psy18035 51 ASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~ 91 (104)
..+||+|+.-.-+...+....--+..-+++|+||||.|-+.
T Consensus 415 ~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~ 455 (850)
T TIGR01407 415 EQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDI 455 (850)
T ss_pred hcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHH
Confidence 35799999988777555333222344479999999999653
No 142
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.47 E-value=0.11 Score=33.32 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=26.1
Q ss_pred cCCCcEEEeCcHHHHHHH-HhC--CCCCCCccEEEEchhhhhhhc
Q psy18035 50 HASPDIVVATPGRFLHIV-VEM--ELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 50 ~~~~~IlV~TP~~l~~l~-~~~--~~~l~~l~~lVlDEaD~ll~~ 91 (104)
...+||+|++=.-+.+-. ... .+.+++ ..+|+||||.+.+.
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~-~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKD-NIVIFDEAHNLEDA 160 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCC-EEEEETTGGGCGGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccC-cEEEEecccchHHH
Confidence 345899999987777332 222 133444 58999999998654
No 143
>KOG0353|consensus
Probab=93.20 E-value=0.3 Score=36.06 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=52.9
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh----cC---CCcEEEeCcHHHHH---HHHh--C
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL----HA---SPDIVVATPGRFLH---IVVE--M 70 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l----~~---~~~IlV~TP~~l~~---l~~~--~ 70 (104)
-.+||++| |.....-+++++ ++....+..+++.+ ..++. .+ ...++--||.++.. ++.. +
T Consensus 135 g~alvi~plislmedqil~lkql----gi~as~lnansske-~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek 209 (695)
T KOG0353|consen 135 GFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKE-EAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK 209 (695)
T ss_pred CceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHH-HHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH
Confidence 36899999 333322334443 44444443334333 23332 22 26899999999872 3322 4
Q ss_pred CCCCCCccEEEEchhhhhhhcC--cHHHH
Q psy18035 71 ELKLSSIQYVVFDEADRLFEMG--FDVEQ 97 (104)
Q Consensus 71 ~~~l~~l~~lVlDEaD~ll~~g--f~~~i 97 (104)
.+....++.+.+||.|+--.+| |+++-
T Consensus 210 a~~~~~~~~iaidevhccsqwghdfr~dy 238 (695)
T KOG0353|consen 210 ALEAGFFKLIAIDEVHCCSQWGHDFRPDY 238 (695)
T ss_pred HhhcceeEEEeecceeehhhhCcccCcch
Confidence 5667888999999999988776 66553
No 144
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=93.13 E-value=0.28 Score=39.89 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhCCC------CCCCccEEEEchhh
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMEL------KLSSIQYVVFDEAD 86 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~~~------~l~~l~~lVlDEaD 86 (104)
||..=.+++..+-.+.++++.++..+.+..+.... -.+||.-||...+- ++++.+.. -.+...|-|+||+|
T Consensus 191 LA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~a--Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 191 LAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQ--YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred hhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 99988889999988999999999776666554333 35899999998876 66654421 23678899999999
Q ss_pred hhh
Q psy18035 87 RLF 89 (104)
Q Consensus 87 ~ll 89 (104)
-+|
T Consensus 269 SvL 271 (1025)
T PRK12900 269 SVL 271 (1025)
T ss_pred hhh
Confidence 875
No 145
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=92.79 E-value=0.41 Score=37.57 Aligned_cols=86 Identities=21% Similarity=0.153 Sum_probs=55.6
Q ss_pred CeeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccH----HHHHHHhcC-C----CcEEEeCcHHHHHHH-HhCCC
Q psy18035 5 NINYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSM----DNQFARLHA-S----PDIVVATPGRFLHIV-VEMEL 72 (104)
Q Consensus 5 ~~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~----~~~~~~l~~-~----~~IlV~TP~~l~~l~-~~~~~ 72 (104)
.+.++|++| +..+..+++.++...... +...+|.... .+....+.. + .+++++|-+.+.... ..+.+
T Consensus 390 ~~~~liv~p~s~~~nw~~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l 468 (866)
T COG0553 390 LGPALIVVPASLLSNWKREFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGL 468 (866)
T ss_pred CCCeEEEecHHHHHHHHHHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHH
Confidence 367999999 888888888777655443 5555665541 333333332 2 689999977776532 22334
Q ss_pred CCCCccEEEEchhhhhhhc
Q psy18035 73 KLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 73 ~l~~l~~lVlDEaD~ll~~ 91 (104)
.-....++|+||||.+-+.
T Consensus 469 ~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 469 KKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred hhceeeeeehhhHHHHhhh
Confidence 4466779999999996433
No 146
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=92.69 E-value=0.23 Score=34.76 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=28.3
Q ss_pred CCCcEEEeCcHHHHHHH-HhC-CCCCCCccEEEEchhhhhhhc
Q psy18035 51 ASPDIVVATPGRFLHIV-VEM-ELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~-~~~-~~~l~~l~~lVlDEaD~ll~~ 91 (104)
..+||+|++-.-+.+-. +.. ...+ .-.++|+||||.+-+.
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d~ 251 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDNV 251 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHHH
Confidence 45899999988887443 322 3344 3679999999999643
No 147
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=92.69 E-value=0.23 Score=34.76 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=28.3
Q ss_pred CCCcEEEeCcHHHHHHH-HhC-CCCCCCccEEEEchhhhhhhc
Q psy18035 51 ASPDIVVATPGRFLHIV-VEM-ELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~-~~~-~~~l~~l~~lVlDEaD~ll~~ 91 (104)
..+||+|++-.-+.+-. +.. ...+ .-.++|+||||.+-+.
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d~ 251 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDNV 251 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHHH
Confidence 45899999988887443 322 3344 3679999999999643
No 148
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.66 E-value=0.95 Score=35.41 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=52.3
Q ss_pred CCeeEEEehhHH--------HHHHHHHHHHhccC-CceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhC
Q psy18035 4 ANINYLISFPIV--------QQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEM 70 (104)
Q Consensus 4 ~~~~~lil~PLa--------~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~ 70 (104)
++-+++|++|+. ....+..+.+.+.. ++++..++|+++..+.... .+++ .+|+|+| +.+ ..
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT-----~vi-e~ 543 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVAT-----TVI-EV 543 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC-----cce-ee
Confidence 345889999821 12233344443332 4889999999876654443 3344 7999999 333 35
Q ss_pred CCCCCCccEEEEchhhhh
Q psy18035 71 ELKLSSIQYVVFDEADRL 88 (104)
Q Consensus 71 ~~~l~~l~~lVlDEaD~l 88 (104)
.+++.+++++|+..+++.
T Consensus 544 GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 544 GVDVPNATVMVIENAERF 561 (681)
T ss_pred CcccCCCcEEEEeCCCCC
Confidence 678899999999888763
No 149
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.55 E-value=1.1 Score=34.39 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=49.4
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
.+.++||+++ .+.++++.+.+ .++++..++|+++..+....+ +++ .+|+|+| +.+. ..+++.+
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~----~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip~ 325 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLER----HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHIDG 325 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCccC
Confidence 3568999999 77776665554 367899999998866544433 344 8999999 4443 5567888
Q ss_pred ccEEEEc
Q psy18035 77 IQYVVFD 83 (104)
Q Consensus 77 l~~lVlD 83 (104)
++++|.-
T Consensus 326 V~~VIny 332 (572)
T PRK04537 326 VKYVYNY 332 (572)
T ss_pred CCEEEEc
Confidence 8887753
No 150
>KOG0950|consensus
Probab=92.52 E-value=0.15 Score=41.04 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=60.5
Q ss_pred EEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHH----HhCCCCCCCccEE
Q psy18035 8 YLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV----VEMELKLSSIQYV 80 (104)
Q Consensus 8 ~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~----~~~~~~l~~l~~l 80 (104)
++.+.| .++.-......+....++.+-..+|+.+..... +.-++-|+|-++-..++ +++. +..+.++
T Consensus 272 ~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~--~~~~g~v 345 (1008)
T KOG0950|consen 272 VLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGR--LDFLGMV 345 (1008)
T ss_pred eeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCC--ccccCcE
Confidence 455556 444444455556666777777777666544432 23579999988865444 4444 5789999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||-|.+.|.|-...++.++.
T Consensus 346 vVdElhmi~d~~rg~~lE~~l~ 367 (1008)
T KOG0950|consen 346 VVDELHMIGDKGRGAILELLLA 367 (1008)
T ss_pred EEeeeeeeeccccchHHHHHHH
Confidence 9999999999988777777664
No 151
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.36 E-value=0.83 Score=37.71 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=55.7
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
+|-|+-++.| -..++.+.++++- +..++.+.+|-++..+-.+.. ....||+||| ..+ ...++..+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LV--PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T-----TII-EtGIDIPn 873 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELV--PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT-----TII-ETGIDIPN 873 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhC--CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe-----eee-ecCcCCCC
Confidence 5678889999 3344444444443 357899999999876654443 3459999999 444 45678999
Q ss_pred ccEEEEchhhhh
Q psy18035 77 IQYVVFDEADRL 88 (104)
Q Consensus 77 l~~lVlDEaD~l 88 (104)
...++++-||++
T Consensus 874 ANTiIIe~AD~f 885 (1139)
T COG1197 874 ANTIIIERADKF 885 (1139)
T ss_pred CceEEEeccccc
Confidence 999999999987
No 152
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.20 E-value=1.1 Score=35.09 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCcc-----HHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhh
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDS-----MDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADR 87 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~-----~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ 87 (104)
=.+++.+.++++ +.+.++..+.+++. .++..+...++ ++|+|||+. + .+.+++.++.++++-.||.
T Consensus 438 G~e~~~e~l~~~--fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-----i-akG~d~p~v~lV~il~aD~ 509 (679)
T PRK05580 438 GTERLEEELAEL--FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQM-----L-AKGHDFPNVTLVGVLDADL 509 (679)
T ss_pred cHHHHHHHHHHh--CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChh-----h-ccCCCCCCcCEEEEEcCch
Confidence 344555555554 24567777777653 23344556664 899999963 3 4567899999999999998
Q ss_pred hhhc
Q psy18035 88 LFEM 91 (104)
Q Consensus 88 ll~~ 91 (104)
.+..
T Consensus 510 ~l~~ 513 (679)
T PRK05580 510 GLFS 513 (679)
T ss_pred hccC
Confidence 8865
No 153
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=91.82 E-value=1.7 Score=32.22 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=46.3
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
..++||.++ -+..+.+.+.+ .++++..++|+.+..+.... .+++ .+|+|+| +.+. ..+++.++
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-rGiDip~v 314 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNK----DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-RGLDIEEL 314 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHH----CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-cCCCcccC
Confidence 357899999 56665555543 46788999999886554443 3344 7999999 4333 45677787
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 315 ~~VI~ 319 (456)
T PRK10590 315 PHVVN 319 (456)
T ss_pred CEEEE
Confidence 77764
No 154
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=91.80 E-value=1.5 Score=33.12 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=46.2
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
.+++||.++ -|..+.+.+. +..++++..++|+.+..+....+ ++| .+|+|+|. . -...+++.++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~---~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----v-l~rGiDip~v 437 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAIT---VVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----V-LGRGVDLLRV 437 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHh---hccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----H-hhccCCcccC
Confidence 367899999 4554444333 34568888999998866554443 344 89999994 2 2345677788
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 438 ~~VI~ 442 (518)
T PLN00206 438 RQVII 442 (518)
T ss_pred CEEEE
Confidence 77764
No 155
>KOG0388|consensus
Probab=91.75 E-value=0.36 Score=38.32 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=50.0
Q ss_pred EEehhHHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHH---------hcCCCcEEEeCcHHHH---HHHHhCCCCCC
Q psy18035 9 LISFPIVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFAR---------LHASPDIVVATPGRFL---HIVVEMELKLS 75 (104)
Q Consensus 9 lil~PLa~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~---------l~~~~~IlV~TP~~l~---~l~~~~~~~l~ 75 (104)
||++| |.-.+++.+++++++ .+++..+.|+.+.....+. -..+.||+|++-..+. .+++ --
T Consensus 621 LVVtp-aStL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~q-----kv 694 (1185)
T KOG0388|consen 621 LVVTP-ASTLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQ-----KV 694 (1185)
T ss_pred EEeeh-HHHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHH-----hh
Confidence 56777 222355777777774 5888888888776555444 1234799998865554 2222 22
Q ss_pred CccEEEEchhhhhhhc
Q psy18035 76 SIQYVVFDEADRLFEM 91 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~ 91 (104)
..+|.|+|||..+=++
T Consensus 695 KWQYMILDEAQAIKSS 710 (1185)
T KOG0388|consen 695 KWQYMILDEAQAIKSS 710 (1185)
T ss_pred hhhheehhHHHHhhhh
Confidence 4569999999887554
No 156
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.56 E-value=1.4 Score=32.22 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=46.4
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
..++||.++ -|..+++.+++ .++++..++|+++..+....+ +++ .+|+|+|. .+ ...+++.++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~----~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~-~rGiDip~v 324 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAA----DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VA-ARGLHIPAV 324 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHh----CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hh-hcCCCcccc
Confidence 457899999 66665555543 467889999998765544433 344 89999993 33 356677888
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 325 ~~VI~ 329 (423)
T PRK04837 325 THVFN 329 (423)
T ss_pred CEEEE
Confidence 77664
No 157
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.54 E-value=1.3 Score=33.56 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhccCCceEEEEEcCccH-----HHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhh
Q psy18035 15 VQQTFKFVKELGKFTKLQSTCLLGGDSM-----DNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRL 88 (104)
Q Consensus 15 a~Qi~~~~~~l~~~~~~~~~~~~g~~~~-----~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~l 88 (104)
.+++.+.++++ +.+.++..+.+++.. +...+...++ ++|+|||+. -.+.+++.++.++++=.||..
T Consensus 271 te~~~e~l~~~--fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~------i~kG~d~~~v~lV~vl~aD~~ 342 (505)
T TIGR00595 271 TEQVEEELAKL--FPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM------IAKGHHFPNVTLVGVLDADSG 342 (505)
T ss_pred HHHHHHHHHhh--CCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc------cccCCCCCcccEEEEEcCccc
Confidence 35566666654 345777777777542 3445556665 899999963 345678999999998889987
Q ss_pred hhc-Cc
Q psy18035 89 FEM-GF 93 (104)
Q Consensus 89 l~~-gf 93 (104)
+.. +|
T Consensus 343 l~~pd~ 348 (505)
T TIGR00595 343 LHSPDF 348 (505)
T ss_pred ccCccc
Confidence 754 44
No 158
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.47 E-value=0.26 Score=32.18 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=22.8
Q ss_pred cCCCcEEEeCcHHHHHHHHhCCCC-C-CCccEEEEchhhhhhhc
Q psy18035 50 HASPDIVVATPGRFLHIVVEMELK-L-SSIQYVVFDEADRLFEM 91 (104)
Q Consensus 50 ~~~~~IlV~TP~~l~~l~~~~~~~-l-~~l~~lVlDEaD~ll~~ 91 (104)
.+.++|+++|+..... ..+. + ...+++|+|||-++.+.
T Consensus 168 l~~~~vi~~T~~~~~~----~~~~~~~~~~d~vIvDEAsq~~e~ 207 (236)
T PF13086_consen 168 LKEADVIFTTLSSAAS----PFLSNFKEKFDVVIVDEASQITEP 207 (236)
T ss_dssp HHT-SEEEEETCGGG-----CCGTT-----SEEEETTGGGS-HH
T ss_pred cccccccccccccchh----hHhhhhcccCCEEEEeCCCCcchH
Confidence 3568999999876622 2222 2 27889999999998643
No 159
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=91.28 E-value=0.5 Score=37.90 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=30.5
Q ss_pred CCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhh
Q psy18035 52 SPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADR 87 (104)
Q Consensus 52 ~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ 87 (104)
...|-+.|.|.|+..+..... ++...++|+||||.
T Consensus 139 ~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHE 173 (845)
T COG1643 139 RTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHE 173 (845)
T ss_pred CceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhh
Confidence 357889999999998887665 89999999999995
No 160
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.17 E-value=0.42 Score=38.65 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhh
Q psy18035 51 ASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~ 90 (104)
..+||+|+.-.-|+..+..+.--+..-+++|+||||.+-+
T Consensus 430 ~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 430 KFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred hcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 4579999998877755533222345578999999999964
No 161
>KOG0344|consensus
Probab=91.10 E-value=1.6 Score=33.58 Aligned_cols=70 Identities=14% Similarity=0.261 Sum_probs=51.2
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccH---HHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSM---DNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
|-++|.+= -|.|++.++. .+.++++..++|.-+. ++.....+.| .+++||| +++..| ++|+++.
T Consensus 388 PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn 458 (593)
T KOG0344|consen 388 PPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT-----DLLARG-IDFKGVN 458 (593)
T ss_pred CCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcc
Confidence 44455544 7778777665 5678999999998553 3444555666 8999999 777766 8899999
Q ss_pred EEEEch
Q psy18035 79 YVVFDE 84 (104)
Q Consensus 79 ~lVlDE 84 (104)
++|-+.
T Consensus 459 ~VInyD 464 (593)
T KOG0344|consen 459 LVINYD 464 (593)
T ss_pred eEEecC
Confidence 998754
No 162
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=90.70 E-value=1.7 Score=34.89 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=47.9
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC---C-CcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA---S-PDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~---~-~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
..+||.+| -+.++++.+++... .++.+..++|+.+..++.+.+.. + ..|+|+|. . -...+++.+++
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----I-AErgItIp~V~ 282 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----I-AETSLTIEGIR 282 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----h-HhhcccccCce
Confidence 46899999 44444444443211 46889999999998888777653 2 68999994 3 34566778888
Q ss_pred EEE
Q psy18035 79 YVV 81 (104)
Q Consensus 79 ~lV 81 (104)
++|
T Consensus 283 ~VI 285 (819)
T TIGR01970 283 VVI 285 (819)
T ss_pred EEE
Confidence 755
No 163
>PTZ00110 helicase; Provisional
Probab=90.66 E-value=2.4 Score=32.31 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=47.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHH---HhcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA---RLHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
.+.++||.|+ -|..+.+.++ ..++.+..++|+.+..+... ..+++ ..|+|+|. .+ ...+++.+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~----~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~-~rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELR----LDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VA-SRGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHH----HcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hh-hcCCCccc
Confidence 4578999999 6666555544 34577888999987665443 33444 78999993 32 45567778
Q ss_pred ccEEEE
Q psy18035 77 IQYVVF 82 (104)
Q Consensus 77 l~~lVl 82 (104)
++++|.
T Consensus 446 v~~VI~ 451 (545)
T PTZ00110 446 VKYVIN 451 (545)
T ss_pred CCEEEE
Confidence 887764
No 164
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.62 E-value=2.5 Score=31.48 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---c-CCCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---H-ASPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~-~~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
.+..+||.++ -+.++.+.+++ .++++..++|+.+..+....+ . ...+|+|+|- .+ ...+++.+
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~----~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-----~~-~~GID~p~ 294 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQN----LGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-----AF-GMGINKPD 294 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHh----cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-----hh-hccCCccc
Confidence 3556799999 66666655543 467888999998866544332 2 3489999993 22 34566777
Q ss_pred ccEEEEch
Q psy18035 77 IQYVVFDE 84 (104)
Q Consensus 77 l~~lVlDE 84 (104)
++++|.-.
T Consensus 295 V~~VI~~~ 302 (470)
T TIGR00614 295 VRFVIHYS 302 (470)
T ss_pred ceEEEEeC
Confidence 77777543
No 165
>KOG1002|consensus
Probab=90.56 E-value=1.7 Score=33.40 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=53.7
Q ss_pred CeeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCC--------C--
Q psy18035 5 NINYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME--------L-- 72 (104)
Q Consensus 5 ~~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~--------~-- 72 (104)
+-..||++| -..|=.+++.+..+ -.+++.+.+|. ......+.+. +.|++.+|-..+-.-.++.. +
T Consensus 231 ra~tLVvaP~VAlmQW~nEI~~~T~-gslkv~~YhG~-~R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~k 307 (791)
T KOG1002|consen 231 RAPTLVVAPTVALMQWKNEIERHTS-GSLKVYIYHGA-KRDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDK 307 (791)
T ss_pred cCCeeEEccHHHHHHHHHHHHHhcc-CceEEEEEecc-cccCCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCccc
Confidence 345899999 55676777777665 34666666654 4444444443 57999999877776554421 1
Q ss_pred ---CCCCccE--EEEchhhhhhhc
Q psy18035 73 ---KLSSIQY--VVFDEADRLFEM 91 (104)
Q Consensus 73 ---~l~~l~~--lVlDEaD~ll~~ 91 (104)
.+..+++ +|+||||.+=+.
T Consensus 308 e~SlLHsi~~~RiIlDEAH~IK~R 331 (791)
T KOG1002|consen 308 EKSLLHSIKFYRIILDEAHNIKDR 331 (791)
T ss_pred ccchhhhceeeeeehhhhcccccc
Confidence 1344554 699999988654
No 166
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=90.42 E-value=2.7 Score=30.77 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=47.4
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
..++||.++ -+..+++.++. .++++..++|+++..+.... .+++ .+|+|+| +.+ ...+++.++
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~-~~GiDip~v 314 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVA-ARGIDIDDV 314 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----ccc-ccCccCCCC
Confidence 468899999 66666655553 46888999999876655443 3444 8999999 333 345678888
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 315 ~~VI~ 319 (434)
T PRK11192 315 SHVIN 319 (434)
T ss_pred CEEEE
Confidence 88773
No 167
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.31 E-value=2.1 Score=32.42 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=46.7
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
.++||.+. .+..+...++ ..++++..++|+.+..+..+.+ +++ .+|+|+| +.. ...+++.++.
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~----~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT-----Dva-aRGiDi~~v~ 343 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLR----KRGFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-----DVA-ARGLDIPDVS 343 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHH----HCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe-----chh-hccCCccccc
Confidence 36888888 6666554444 3458999999998866554444 344 8999999 433 5677788887
Q ss_pred EEE
Q psy18035 79 YVV 81 (104)
Q Consensus 79 ~lV 81 (104)
++|
T Consensus 344 ~Vi 346 (513)
T COG0513 344 HVI 346 (513)
T ss_pred eeE
Confidence 775
No 168
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=90.22 E-value=1.5 Score=29.94 Aligned_cols=87 Identities=15% Similarity=0.256 Sum_probs=48.9
Q ss_pred eEEEehh--HHHHHHHHHHHH-hccCCceEEE--EEcCccHH----HHHH----HhcCCCcEEEeCcHHHHHHHH-----
Q psy18035 7 NYLISFP--IVQQTFKFVKEL-GKFTKLQSTC--LLGGDSMD----NQFA----RLHASPDIVVATPGRFLHIVV----- 68 (104)
Q Consensus 7 ~~lil~P--La~Qi~~~~~~l-~~~~~~~~~~--~~g~~~~~----~~~~----~l~~~~~IlV~TP~~l~~l~~----- 68 (104)
-+-+++| |..|.++.++.- +.-.+-++.. +...++.. .... .....-.|+++||..+..+.-
T Consensus 72 LvrviVpk~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~ 151 (229)
T PF12340_consen 72 LVRVIVPKALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLER 151 (229)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHH
Confidence 4556666 999998887744 4333433332 33333321 1121 122345799999999874431
Q ss_pred --hCCC-----------CCCCccEEEEchhhhhhhcCc
Q psy18035 69 --EMEL-----------KLSSIQYVVFDEADRLFEMGF 93 (104)
Q Consensus 69 --~~~~-----------~l~~l~~lVlDEaD~ll~~gf 93 (104)
.+.. .+++...=|+||+|..|+.-|
T Consensus 152 l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~k~ 189 (229)
T PF12340_consen 152 LQDGKPEEARELLKIQKWLDEHSRDILDESDEILSVKY 189 (229)
T ss_pred HHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCcce
Confidence 1111 123344469999999987544
No 169
>KOG0331|consensus
Probab=90.19 E-value=1.9 Score=32.80 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=50.9
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhc---CC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---AS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~---~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
.+.++||.|- -|.++.+.++.. ++++..++|+.+..+....|. +| +.|+|||- +-.+.+++.+
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLDi~d 409 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLDVPD 409 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCCCcc
Confidence 4568899998 666666555532 378899999988777666654 44 89999993 4456788999
Q ss_pred ccEEEE
Q psy18035 77 IQYVVF 82 (104)
Q Consensus 77 l~~lVl 82 (104)
++++|-
T Consensus 410 V~lVIn 415 (519)
T KOG0331|consen 410 VDLVIN 415 (519)
T ss_pred ccEEEe
Confidence 999884
No 170
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.13 E-value=0.32 Score=29.13 Aligned_cols=23 Identities=39% Similarity=0.365 Sum_probs=15.3
Q ss_pred cEEEEchhhhhhhcCcHHHHHhh
Q psy18035 78 QYVVFDEADRLFEMGFDVEQQSP 100 (104)
Q Consensus 78 ~~lVlDEaD~ll~~gf~~~i~~i 100 (104)
..+|+||||.+.+..+.+.+.++
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l 111 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSL 111 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHH
T ss_pred eEEEEeChHhcCCHHHHHHHHHH
Confidence 78999999996443444444444
No 171
>KOG0952|consensus
Probab=90.11 E-value=0.17 Score=41.26 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=54.4
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh--CCCCCCCcc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE--MELKLSSIQ 78 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~--~~~~l~~l~ 78 (104)
.+-++++++| |...-.+-.++...-.+++..-..|...... ... ..++++|+||.+.-...++ ..-.+.+++
T Consensus 972 p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~--~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~ 1048 (1230)
T KOG0952|consen 972 PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDV--KAV-READIVITTPEKWDGISRSWQTRKYVQSVS 1048 (1230)
T ss_pred CCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCCh--hhe-ecCceEEcccccccCccccccchhhhcccc
Confidence 3467888888 4443332222222223667766666655442 122 2479999999999888873 445689999
Q ss_pred EEEEchhhhhhh
Q psy18035 79 YVVFDEADRLFE 90 (104)
Q Consensus 79 ~lVlDEaD~ll~ 90 (104)
.+|+||.|.+=+
T Consensus 1049 ~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1049 LIVLDEIHLLGE 1060 (1230)
T ss_pred ceeecccccccC
Confidence 999999996643
No 172
>KOG0386|consensus
Probab=89.98 E-value=0.23 Score=40.35 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=42.9
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHH--HHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDN--QFARLHASPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~--~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
.+||+ +|+|| |.+ +-.++.++- ++......|.-.... +.+......+|+++|=..+.. ....+.--+
T Consensus 443 ~~GP~-LvivPlstL~N----W~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~ 515 (1157)
T KOG0386|consen 443 MQGPF-LIIVPLSTLVN----WSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKIS 515 (1157)
T ss_pred cCCCe-EEeccccccCC----chhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccC
Confidence 45665 66778 544 445555553 344444333322221 111122348999999655553 111122234
Q ss_pred ccEEEEchhhhhh
Q psy18035 77 IQYVVFDEADRLF 89 (104)
Q Consensus 77 l~~lVlDEaD~ll 89 (104)
.+++||||.|+|=
T Consensus 516 W~yMIIDEGHRmK 528 (1157)
T KOG0386|consen 516 WKYMIIDEGHRMK 528 (1157)
T ss_pred Ccceeeccccccc
Confidence 5689999999993
No 173
>COG4889 Predicted helicase [General function prediction only]
Probab=89.75 E-value=1.1 Score=36.77 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=50.8
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHH--------------------HHH-----hcCCCcEEE
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQ--------------------FAR-----LHASPDIVV 57 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~--------------------~~~-----l~~~~~IlV 57 (104)
.+.|.|+| |-.|+.+....- +...++...+.++...... .+. -.++.-|+.
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 57899999 666655433321 2245666555544321111 111 113456888
Q ss_pred eCcHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 58 ATPGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 58 ~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
+|-..+...-+....-+...++++-||||+--
T Consensus 286 sTYQSl~~i~eAQe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 286 STYQSLPRIKEAQEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred EcccchHHHHHHHHcCCCCccEEEecchhccc
Confidence 88888776665555567889999999999874
No 174
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.63 E-value=1.8 Score=34.40 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhccCCceEEEEEcCccHH-----HHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhh
Q psy18035 15 VQQTFKFVKELGKFTKLQSTCLLGGDSMD-----NQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRL 88 (104)
Q Consensus 15 a~Qi~~~~~~l~~~~~~~~~~~~g~~~~~-----~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~l 88 (104)
.+++.++++++ +++.++..+.+++... .......+| .+|+|||+ ++- +..+|.++..+.+=.||.+
T Consensus 493 terieeeL~~~--FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQ-----mia-KG~~fp~vtLVgvl~aD~~ 564 (730)
T COG1198 493 TERIEEELKRL--FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQ-----MIA-KGHDFPNVTLVGVLDADTG 564 (730)
T ss_pred HHHHHHHHHHH--CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecch-----hhh-cCCCcccceEEEEEechhh
Confidence 45666666665 3467777777766542 223344455 99999994 444 4478999999988889998
Q ss_pred hhc-Cc
Q psy18035 89 FEM-GF 93 (104)
Q Consensus 89 l~~-gf 93 (104)
|.. +|
T Consensus 565 L~~~Df 570 (730)
T COG1198 565 LGSPDF 570 (730)
T ss_pred hcCCCc
Confidence 865 45
No 175
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=89.36 E-value=3 Score=32.51 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=45.5
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHH---HhcCC-CcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA---RLHAS-PDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
.++||.|+ -+.++++.+++ .++.+..++|+++..+... .++++ .+|+|+| +.+. ..+++.++.
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~----~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~a-rGIDip~V~ 315 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALER----NGYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAA-RGLDVERIS 315 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHh----CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHh-cCCCcccCC
Confidence 57899999 55665555543 4678888999987655433 34444 8999999 4443 446777888
Q ss_pred EEEE
Q psy18035 79 YVVF 82 (104)
Q Consensus 79 ~lVl 82 (104)
++|.
T Consensus 316 ~VI~ 319 (629)
T PRK11634 316 LVVN 319 (629)
T ss_pred EEEE
Confidence 7764
No 176
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=89.23 E-value=4.9 Score=28.92 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=44.4
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++-++||+++ -+..+++.+++. ..++.+..++|..+..+..+.. ..+|+|+| +.+. ..++++.. ++
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~--~~~iLVaT-----dv~~-rGiDi~~~-~v 339 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAM--QFDILLGT-----STVD-VGVDFKRD-WL 339 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhc--cCCEEEEe-----cHHh-cccCCCCc-eE
Confidence 3458999999 666666666543 2345677778877766554332 47999999 4433 45566665 56
Q ss_pred EEc
Q psy18035 81 VFD 83 (104)
Q Consensus 81 VlD 83 (104)
|.|
T Consensus 340 i~~ 342 (357)
T TIGR03158 340 IFS 342 (357)
T ss_pred EEC
Confidence 664
No 177
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.02 E-value=2.6 Score=33.04 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHH---HHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++.+++|+++ .|..+.+.+.+. ++++..++|+.+..+.. ..+++| .+|+||| +.+. ..+++.+
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~ 510 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPE 510 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCC
Confidence 4678899999 667666666543 57788888877654333 334444 8999999 4443 5678899
Q ss_pred ccEEEEchhhhh
Q psy18035 77 IQYVVFDEADRL 88 (104)
Q Consensus 77 l~~lVlDEaD~l 88 (104)
++++|+-++|..
T Consensus 511 v~lVvi~Dadif 522 (655)
T TIGR00631 511 VSLVAILDADKE 522 (655)
T ss_pred CcEEEEeCcccc
Confidence 999988888764
No 178
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=88.74 E-value=3.1 Score=32.14 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=44.4
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cC-CCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++.++||.++ -+.++.+.+++ .++++..++||.+..+....+ .+ ..+|+|+|. .+ ...+++.+
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~----~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~-----a~-~~GIDip~ 304 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQS----RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV-----AF-GMGINKPN 304 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec-----hh-hccCCCCC
Confidence 3457888888 55555554443 467888899998765543333 23 389999994 32 34566677
Q ss_pred ccEEEE
Q psy18035 77 IQYVVF 82 (104)
Q Consensus 77 l~~lVl 82 (104)
++++|.
T Consensus 305 V~~VI~ 310 (607)
T PRK11057 305 VRFVVH 310 (607)
T ss_pred cCEEEE
Confidence 776663
No 179
>PHA02653 RNA helicase NPH-II; Provisional
Probab=88.64 E-value=2.6 Score=33.20 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=46.4
Q ss_pred eeEEEehhHHHHHHHHHHHHhcc-CCceEEEEEcCccHHHH-HHHh-cCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 6 INYLISFPIVQQTFKFVKELGKF-TKLQSTCLLGGDSMDNQ-FARL-HAS-PDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 6 ~~~lil~PLa~Qi~~~~~~l~~~-~~~~~~~~~g~~~~~~~-~~~l-~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
-++||.+|=..++....+.+.+. .++++..++|+.+..++ .+.. +++ ..|+|+|. . -...+++.+++++|
T Consensus 396 g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd-----I-AERGIDIp~V~~VI 469 (675)
T PHA02653 396 SSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP-----Y-LESSVTIRNATHVY 469 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhccCceeEEeccC-----h-hhccccccCeeEEE
Confidence 47899999223344444444433 26889999999886544 3444 344 79999994 3 34577888998775
No 180
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=88.47 E-value=2.3 Score=24.01 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=26.8
Q ss_pred eEEEehh----HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCc
Q psy18035 7 NYLISFP----IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATP 60 (104)
Q Consensus 7 ~~lil~P----La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP 60 (104)
+++++|| .+..+...+++..+..++...+-. .+..+ ......++|++++|+
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~--~~~~~-~~~~~~~~Dliist~ 56 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGIDVKVEQ--CKIAE-VPSLLDDADLIVSTT 56 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEE--ecHHH-hhcccCCCcEEEEcC
Confidence 6889999 333444444444444444332221 12211 121345799999997
No 181
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=88.37 E-value=0.71 Score=37.90 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEc-CccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhCCC------CCCCccEEEEchh
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLG-GDSMDNQFARLHASPDIVVATPGRFL-HIVVEMEL------KLSSIQYVVFDEA 85 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~~~------~l~~l~~lVlDEa 85 (104)
||..=.+++..+-.++++++.++.. +.+..+... .-.+||.-||...+- ++++.+.. -.+...|-|+||+
T Consensus 222 LA~RDaewmgply~fLGLsvg~i~~~~~~~~~rr~--aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEv 299 (1112)
T PRK12901 222 LAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEARRK--AYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEV 299 (1112)
T ss_pred hhhccHHHHHHHHHHhCCceeecCCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchHhhhCcCCceeEeech
Confidence 9888888888888899999998865 334443322 235899999998876 66654421 2466889999999
Q ss_pred hhhh
Q psy18035 86 DRLF 89 (104)
Q Consensus 86 D~ll 89 (104)
|-+|
T Consensus 300 DSIL 303 (1112)
T PRK12901 300 DSVL 303 (1112)
T ss_pred hhhh
Confidence 9875
No 182
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.78 E-value=5.7 Score=29.56 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=33.7
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeC
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVAT 59 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~T 59 (104)
.++||.++ -+..+++.+. ..++++..++|+.+..+.... .++| .+++|+|
T Consensus 336 ~~~IVF~~s~~~~~~l~~~L~----~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT 392 (475)
T PRK01297 336 ERVMVFANRKDEVRRIEERLV----KDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 392 (475)
T ss_pred CeEEEEeCCHHHHHHHHHHHH----HcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc
Confidence 58999999 5555554443 346778888898876655333 3344 7888888
No 183
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=87.70 E-value=1.1 Score=35.24 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=27.6
Q ss_pred CCCcEEEeCcHHHHHHHH--hCCCCCC-CccEEEEchhhhhhh
Q psy18035 51 ASPDIVVATPGRFLHIVV--EMELKLS-SIQYVVFDEADRLFE 90 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~--~~~~~l~-~l~~lVlDEaD~ll~ 90 (104)
..+||+|+.-.-|+..+. .+.+-.+ +-.++|+||||.|-+
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 468999999887774442 2233222 467899999999964
No 184
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=87.40 E-value=4.4 Score=32.61 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=48.8
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC---C-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA---S-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~---~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
.-.+||.+| -++++++.+++.. ..++.+..++|+.+..++.+.+.. + ..|+|+|. +-...+++.++
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~-~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn------IAErsLtIp~V 284 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRV-ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN------IAETSLTIEGI 284 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhc-cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc------hHHhcccccCc
Confidence 356899999 5555555554321 136888899999998887777653 2 68999994 33456778888
Q ss_pred cEEE
Q psy18035 78 QYVV 81 (104)
Q Consensus 78 ~~lV 81 (104)
+++|
T Consensus 285 ~~VI 288 (812)
T PRK11664 285 RLVV 288 (812)
T ss_pred eEEE
Confidence 8665
No 185
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=87.20 E-value=5.6 Score=30.53 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=44.1
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---c-CCCcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---H-ASPDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~-~~~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ .+.++.+.++. .++++..++||.+..+....+ . ...+|+|+|- .+ ...++..++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~----~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~-----a~-~~GID~p~v 293 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLES----QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN-----AF-GMGIDKPNV 293 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHh----CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec-----hh-hccCcCCCC
Confidence 356788888 66666665543 467888899998865544332 2 3489999993 22 234566677
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 294 ~~VI~ 298 (591)
T TIGR01389 294 RFVIH 298 (591)
T ss_pred CEEEE
Confidence 76664
No 186
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=87.20 E-value=1.6 Score=24.65 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=28.1
Q ss_pred eEEEehh----HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH
Q psy18035 7 NYLISFP----IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 63 (104)
Q Consensus 7 ~~lil~P----La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l 63 (104)
+++++|+ -..-+.+.+++..+..++.+....+... ........+|+++.||.--
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~---~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSIL---EVEEIADDADLILLTPQIA 58 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETT---THHHHHTT-SEEEEEESSG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEeccc---ccccccCCCcEEEEcCccc
Confidence 4688888 1112223444444444566655554422 2222345689999999544
No 187
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=87.00 E-value=4.4 Score=23.75 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=46.5
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHH---HHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~---~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.+.||.+| -+.++.+.+++ ....+..+.|+.+..+.. ....++ ..|+++|. . -...+++...
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~-----~-~~~G~d~~~~ 97 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD-----V-IARGIDLPNV 97 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC-----h-hhcCcChhhC
Confidence 567899999 55666655554 456788888887643332 223344 68999994 1 2345667778
Q ss_pred cEEEEchhh
Q psy18035 78 QYVVFDEAD 86 (104)
Q Consensus 78 ~~lVlDEaD 86 (104)
+.+|+.+.+
T Consensus 98 ~~vi~~~~~ 106 (131)
T cd00079 98 SVVINYDLP 106 (131)
T ss_pred CEEEEeCCC
Confidence 888776654
No 188
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=86.60 E-value=6.3 Score=28.97 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=57.2
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEE-cCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLL-GGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
+--.+|.+| ..+|+...+++- ....+++.+. -+....+...++++| .+++|+| ..++ +.+.+.+++.
T Consensus 305 ~~P~liF~p~I~~~eq~a~~lk~~--~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILE-RGVTfp~vdV 376 (441)
T COG4098 305 GRPVLIFFPEIETMEQVAAALKKK--LPKETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TILE-RGVTFPNVDV 376 (441)
T ss_pred CCcEEEEecchHHHHHHHHHHHhh--CCccceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehhh-cccccccceE
Confidence 445788899 788888777543 2345544443 345678888999988 8999999 4444 4556899999
Q ss_pred EEEchhhhhhhc
Q psy18035 80 VVFDEADRLFEM 91 (104)
Q Consensus 80 lVlDEaD~ll~~ 91 (104)
+|++--|+++..
T Consensus 377 ~Vlgaeh~vfTe 388 (441)
T COG4098 377 FVLGAEHRVFTE 388 (441)
T ss_pred EEecCCcccccH
Confidence 999988887654
No 189
>PTZ00424 helicase 45; Provisional
Probab=86.48 E-value=7.8 Score=27.84 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=45.4
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
..+++|.++ -+..+.+.++. .++++..++|+.+..++... .++| .+|+|+| +.+ ...+++.++
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~----~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT-----~~l-~~GiDip~v 336 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHE----RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITT-----DLL-ARGIDVQQV 336 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHH----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEc-----ccc-cCCcCcccC
Confidence 357889998 55555444432 36788899999886654433 3444 8999999 332 345677888
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 337 ~~VI~ 341 (401)
T PTZ00424 337 SLVIN 341 (401)
T ss_pred CEEEE
Confidence 88775
No 190
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.73 E-value=1.1 Score=35.14 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=27.5
Q ss_pred CCCcEEEeCcHHHHHHHHh--CCCCCCCccEEEEchhhhhhhc
Q psy18035 51 ASPDIVVATPGRFLHIVVE--MELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~~--~~~~l~~l~~lVlDEaD~ll~~ 91 (104)
..+||||+.=.-|.+--.. -.+++++ ..+|+||||.+.+.
T Consensus 194 ~~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d~ 235 (705)
T TIGR00604 194 PFANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDNV 235 (705)
T ss_pred hcCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHHH
Confidence 3579999987776633222 2344555 78999999999654
No 191
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=85.62 E-value=6 Score=28.02 Aligned_cols=54 Identities=15% Similarity=0.074 Sum_probs=34.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHH-------HHhcCC-CcEEEeCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQF-------ARLHAS-PDIVVATP 60 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~-------~~l~~~-~~IlV~TP 60 (104)
+.++||+++ -|..+++.+++. ..+.++..++|+.+..+.. +..+++ ..++|+|.
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~--~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~ 286 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKEN--APEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ 286 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhh--cCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc
Confidence 568999999 555555555443 2235688889988654432 233444 78999994
No 192
>PRK13767 ATP-dependent helicase; Provisional
Probab=85.45 E-value=8.3 Score=31.28 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=44.7
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhc--cCCceEEEEEcCccHHHHHH---HhcCC-CcEEEeCcHHHHHHHHhCCCCCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGK--FTKLQSTCLLGGDSMDNQFA---RLHAS-PDIVVATPGRFLHIVVEMELKLS 75 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~--~~~~~~~~~~g~~~~~~~~~---~l~~~-~~IlV~TP~~l~~l~~~~~~~l~ 75 (104)
+.++||.++ .|..++..+++... +.+..+...+|+.+..+... .+++| ..++|||. .+ ...+++.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs-----~L-e~GIDip 357 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSST-----SL-ELGIDIG 357 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hH-HhcCCCC
Confidence 457899999 66666666665322 23467888899988655433 34444 68888884 22 2245566
Q ss_pred CccEEEE
Q psy18035 76 SIQYVVF 82 (104)
Q Consensus 76 ~l~~lVl 82 (104)
+++++|.
T Consensus 358 ~Vd~VI~ 364 (876)
T PRK13767 358 YIDLVVL 364 (876)
T ss_pred CCcEEEE
Confidence 6666654
No 193
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=85.41 E-value=6.7 Score=29.00 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=45.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
..++||.|+ -+..+++.+++ .++++..++|+.+..+....+ +++ .+++|+| +.+ ...+++.++
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~----~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaT-----dv~-~rGiDi~~v 311 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNA----QGFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-----DVA-ARGLDIKAL 311 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEe-----ccc-ccccchhcC
Confidence 346899999 55555554443 467889999998866544433 344 8999999 332 345667777
Q ss_pred cEEEEc
Q psy18035 78 QYVVFD 83 (104)
Q Consensus 78 ~~lVlD 83 (104)
+++|.-
T Consensus 312 ~~VI~~ 317 (460)
T PRK11776 312 EAVINY 317 (460)
T ss_pred CeEEEe
Confidence 777653
No 194
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=84.89 E-value=4.5 Score=21.88 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=38.5
Q ss_pred hccCCceEEEEEcCccHHHHHHHh---cC-CCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchh
Q psy18035 26 GKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEA 85 (104)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEa 85 (104)
.+..++++..++|+++..+....+ .+ ..+++|+|. .-...+++..++.+|+-+.
T Consensus 3 L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~------~~~~Gid~~~~~~vi~~~~ 60 (78)
T PF00271_consen 3 LEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATD------ILGEGIDLPDASHVIFYDP 60 (78)
T ss_dssp HHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESC------GGTTSSTSTTESEEEESSS
T ss_pred hHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeec------ccccccccccccccccccc
Confidence 345678999999988866554444 33 379999993 2345678889999887554
No 195
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=84.72 E-value=4.4 Score=21.58 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=34.5
Q ss_pred CCceEEEEEcCccHHHHHHHhc---C-CCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchh
Q psy18035 29 TKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEA 85 (104)
Q Consensus 29 ~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEa 85 (104)
.++++..++|+++..++...+. + ...++++|. .-...+++.+++.+|+-+.
T Consensus 10 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~------~~~~Gi~~~~~~~vi~~~~ 64 (82)
T smart00490 10 LGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATD------VAERGLDLPGVDLVIIYDL 64 (82)
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECC------hhhCCcChhcCCEEEEeCC
Confidence 3788889999887765544433 2 368999984 2334566777888877554
No 196
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=84.11 E-value=6.6 Score=32.94 Aligned_cols=75 Identities=9% Similarity=0.207 Sum_probs=45.4
Q ss_pred CeeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC-ccEE
Q psy18035 5 NINYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSS-IQYV 80 (104)
Q Consensus 5 ~~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~-l~~l 80 (104)
++.+||.+| .-.+-.+.+..+.+..++++..++|+.+. ...+..++| .+|+|||... .+ +-...+++.+ ++++
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-~~l~~Fr~G~~~vLVata~~-td-v~aRGIDip~~V~~v 402 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-EDYEKFAEGEIDVLIGVASY-YG-TLVRGLDLPERVRYA 402 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-HHHHHHHcCCCCEEEEeccc-cC-cccccCCCCccccEE
Confidence 467899998 22222223333333457899999999864 445555655 8999997300 01 1234667776 6777
Q ss_pred EE
Q psy18035 81 VF 82 (104)
Q Consensus 81 Vl 82 (104)
|.
T Consensus 403 I~ 404 (1171)
T TIGR01054 403 VF 404 (1171)
T ss_pred EE
Confidence 76
No 197
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=83.57 E-value=5.7 Score=26.89 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=17.4
Q ss_pred CcHHHHHHHHhCCCCCCCccEEEEch
Q psy18035 59 TPGRFLHIVVEMELKLSSIQYVVFDE 84 (104)
Q Consensus 59 TP~~l~~l~~~~~~~l~~l~~lVlDE 84 (104)
||..+.+.+.+..++.+++.++-.||
T Consensus 39 tp~~~y~~L~~~~i~w~~v~~f~~DE 64 (233)
T TIGR01198 39 SPIALLEALAAQPLDWSRIHLFLGDE 64 (233)
T ss_pred cHHHHHHHHhhCCCCcceEEEEEecc
Confidence 55555555544467778888888888
No 198
>PRK09401 reverse gyrase; Reviewed
Probab=83.47 E-value=4.7 Score=33.77 Aligned_cols=70 Identities=17% Similarity=0.331 Sum_probs=45.3
Q ss_pred CeeEEEehh---H---HHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC-
Q psy18035 5 NINYLISFP---I---VQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSS- 76 (104)
Q Consensus 5 ~~~~lil~P---L---a~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~- 76 (104)
++++||.+| - |..+.+.++ ..++++..++|+. ....+..++| .+|+|||... .+ +-...+++.+
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~----~~gi~v~~~hg~l--~~~l~~F~~G~~~VLVatas~-td-v~aRGIDiP~~ 399 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLE----DLGINAELAISGF--ERKFEKFEEGEVDVLVGVASY-YG-VLVRGIDLPER 399 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHH----HCCCcEEEEeCcH--HHHHHHHHCCCCCEEEEecCC-CC-ceeecCCCCcc
Confidence 467999999 2 554444443 4579999999998 4445666666 8999997311 01 1234566766
Q ss_pred ccEEEE
Q psy18035 77 IQYVVF 82 (104)
Q Consensus 77 l~~lVl 82 (104)
++++|.
T Consensus 400 IryVI~ 405 (1176)
T PRK09401 400 IRYAIF 405 (1176)
T ss_pred eeEEEE
Confidence 777775
No 199
>KOG1123|consensus
Probab=82.97 E-value=2.5 Score=32.51 Aligned_cols=87 Identities=15% Similarity=0.043 Sum_probs=53.4
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC--------CCCC
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM--------ELKL 74 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~--------~~~l 74 (104)
-++|||+. -+.|=...++.++.--+-.++.++.... .+-..++.|+|+|-.++..--+.. .+.-
T Consensus 346 K~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~ 420 (776)
T KOG1123|consen 346 KSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG 420 (776)
T ss_pred ccEEEEecCccCHHHHHHHHHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc
Confidence 36788888 6777777777665444444555544322 223456899999976655322111 1223
Q ss_pred CCccEEEEchhhhhhhcCcHHHH
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQ 97 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i 97 (104)
...-++++||.|..=..-|+.-+
T Consensus 421 ~EWGllllDEVHvvPA~MFRRVl 443 (776)
T KOG1123|consen 421 REWGLLLLDEVHVVPAKMFRRVL 443 (776)
T ss_pred CeeeeEEeehhccchHHHHHHHH
Confidence 66779999999988666565443
No 200
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=82.88 E-value=11 Score=25.82 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=44.3
Q ss_pred HHHHHHHHhccCCceEEEEEcCcc---HHHHHHHhc-CCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEch
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDS---MDNQFARLH-ASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDE 84 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~---~~~~~~~l~-~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDE 84 (104)
.++-+++..+..+++....-...+ ..+.++.+. +++++||++...+.+.+.+-.-...+.+|+++|-
T Consensus 19 ~~~G~~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~~~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 19 HDEGRKAAEKALGVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSFGFMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECchhhhHHHHHHHHHCCCCEEEECCC
Confidence 356667776667777666544422 333444433 5799999999999988766444456888888764
No 201
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=82.46 E-value=11 Score=24.65 Aligned_cols=86 Identities=8% Similarity=0.045 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhccCCceEEEEEcCccHHH--HHHHh-----cCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhh
Q psy18035 16 QQTFKFVKELGKFTKLQSTCLLGGDSMDN--QFARL-----HASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRL 88 (104)
Q Consensus 16 ~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~--~~~~l-----~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~l 88 (104)
.|..+.++++.....-....++|.....+ -...+ ..+.+++.-+-..+......-.-.+...+.+++||+|.+
T Consensus 23 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l 102 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAI 102 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhh
Confidence 45556666654433445666776543222 22222 123344443333332211110011345578999999987
Q ss_pred hhc-CcHHHHHhhh
Q psy18035 89 FEM-GFDVEQQSPC 101 (104)
Q Consensus 89 l~~-gf~~~i~~i~ 101 (104)
-.. ++.+.+..++
T Consensus 103 ~~~~~~~~~L~~~l 116 (226)
T TIGR03420 103 AGQPEWQEALFHLY 116 (226)
T ss_pred cCChHHHHHHHHHH
Confidence 543 2344454443
No 202
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=82.17 E-value=5.9 Score=26.49 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=17.0
Q ss_pred CcHHHHHHHHhC-CCCCCCccEEEEch
Q psy18035 59 TPGRFLHIVVEM-ELKLSSIQYVVFDE 84 (104)
Q Consensus 59 TP~~l~~l~~~~-~~~l~~l~~lVlDE 84 (104)
||..+.+.+-+. .++.+++.++-+||
T Consensus 34 tp~~~y~~L~~~~~i~w~~v~~f~~DE 60 (219)
T cd01400 34 TPKPLYELLAAAPALDWSKVHVFLGDE 60 (219)
T ss_pred cHHHHHHHhccccCCCCceEEEEEeec
Confidence 444444444443 37788888888888
No 203
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=81.40 E-value=11 Score=26.48 Aligned_cols=78 Identities=10% Similarity=0.180 Sum_probs=54.1
Q ss_pred eEEEehh-------HHHHHHHHHHHHhccC-CceEEEEEcCc----cHHHHHHHhc-CCCcEEEeCcHHHHHHHHhCCCC
Q psy18035 7 NYLISFP-------IVQQTFKFVKELGKFT-KLQSTCLLGGD----SMDNQFARLH-ASPDIVVATPGRFLHIVVEMELK 73 (104)
Q Consensus 7 ~~lil~P-------La~Qi~~~~~~l~~~~-~~~~~~~~g~~----~~~~~~~~l~-~~~~IlV~TP~~l~~l~~~~~~~ 73 (104)
++.++.| -.+..++-++++.+.. ++.....-... ......+.+. .+.++||++-....+.+..-.-.
T Consensus 3 ~v~~~~~g~~~D~g~n~~~~~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~~~~~~~~vA~~ 82 (306)
T PF02608_consen 3 KVALLDPGGINDKGFNQSAYEGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFEYSDALQEVAKE 82 (306)
T ss_dssp EEEEESSS-CCCSSHHHHHHHHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGGGHHHHHHHHTC
T ss_pred EEEEEECCCCCCccHHHHHHHHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHH
Confidence 4556666 6677778888888777 88877766544 3444545543 67999999988888887765556
Q ss_pred CCCccEEEEch
Q psy18035 74 LSSIQYVVFDE 84 (104)
Q Consensus 74 l~~l~~lVlDE 84 (104)
+.+.+|+++|-
T Consensus 83 yPd~~F~~~d~ 93 (306)
T PF02608_consen 83 YPDTKFIIIDG 93 (306)
T ss_dssp -TTSEEEEESS
T ss_pred CCCCEEEEEec
Confidence 68889999885
No 204
>PRK08084 DNA replication initiation factor; Provisional
Probab=80.39 E-value=9.8 Score=25.66 Aligned_cols=85 Identities=6% Similarity=0.010 Sum_probs=41.0
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHH--HHH-----hcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhh
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQ--FAR-----LHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~--~~~-----l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~ 90 (104)
....++++..........++|.....+. ... ..++..+..-+-.........-.-.++..+++++||+|.+-.
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~ 111 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAG 111 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcC
Confidence 4445555544444456777775443221 111 123445555444332221111001134467899999998853
Q ss_pred c-CcHHHHHhhhh
Q psy18035 91 M-GFDVEQQSPCD 102 (104)
Q Consensus 91 ~-gf~~~i~~i~~ 102 (104)
. .+++.+..+++
T Consensus 112 ~~~~~~~lf~l~n 124 (235)
T PRK08084 112 DELWEMAIFDLYN 124 (235)
T ss_pred CHHHHHHHHHHHH
Confidence 3 45555555443
No 205
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=80.25 E-value=12 Score=29.88 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=43.5
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhc----cCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGK----FTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELK 73 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~----~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~ 73 (104)
+.++||.+. .|..+++.+++... ..+.++..+.||...++..+. +++| .+++|+|. .+. ..++
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd-----~le-rGID 344 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTN-----ALE-LGVD 344 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECc-----hHh-ccCC
Confidence 468899999 77777766665422 235667778888876544333 3444 67788873 222 3345
Q ss_pred CCCccEEEE
Q psy18035 74 LSSIQYVVF 82 (104)
Q Consensus 74 l~~l~~lVl 82 (104)
+.+++++|.
T Consensus 345 I~~vd~VI~ 353 (742)
T TIGR03817 345 ISGLDAVVI 353 (742)
T ss_pred cccccEEEE
Confidence 555555554
No 206
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=80.20 E-value=13 Score=31.65 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=47.5
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC--CcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS--PDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
-.+||.+| -+.++.+.+++.. ..++.+..++|+.+..++.+..... ..|+++|. . -...+++.+++++
T Consensus 280 GdILVFLpg~~EI~~l~~~L~~~~-~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATN-----I-AEtSLTIpgV~yV 352 (1283)
T TIGR01967 280 GDILIFLPGEREIRDAAEILRKRN-LRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATN-----V-AETSLTVPGIHYV 352 (1283)
T ss_pred CCEEEeCCCHHHHHHHHHHHHhcC-CCCcEEEeccCCCCHHHHHHHhCCCCCceEEEecc-----H-HHhccccCCeeEE
Confidence 36899999 4444444444321 2356788899999988887776644 58999994 3 3346678888886
Q ss_pred E
Q psy18035 81 V 81 (104)
Q Consensus 81 V 81 (104)
|
T Consensus 353 I 353 (1283)
T TIGR01967 353 I 353 (1283)
T ss_pred E
Confidence 5
No 207
>KOG0333|consensus
Probab=79.99 E-value=12 Score=28.99 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=43.8
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
.|.++|.+. =|.-+.+.+ ...++++..++||.+.++.... ++.+ .+|+|||- .-...++..++
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~L----eK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpnV 586 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKIL----EKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPNV 586 (673)
T ss_pred CCCEEEEEechhhHHHHHHHH----hhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCcc
Confidence 577777777 222222222 2356999999999876654444 4454 89999993 33456788888
Q ss_pred cEEE
Q psy18035 78 QYVV 81 (104)
Q Consensus 78 ~~lV 81 (104)
.++|
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 8775
No 208
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=79.82 E-value=4.1 Score=32.80 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhCC------CCCCCccEEEEchhh
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEME------LKLSSIQYVVFDEAD 86 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~~------~~l~~l~~lVlDEaD 86 (104)
||.-=.+++..+-.+.++++.+...+++..++.... .+||.-+|-..+- +.++-+. .....+.|-|+||+|
T Consensus 133 LA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 133 LARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred hhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 888778888888889999999999888777665554 4799999998876 4444331 124578899999999
Q ss_pred hhh
Q psy18035 87 RLF 89 (104)
Q Consensus 87 ~ll 89 (104)
-++
T Consensus 211 SIL 213 (822)
T COG0653 211 SIL 213 (822)
T ss_pred hee
Confidence 875
No 209
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=79.65 E-value=2.4 Score=32.81 Aligned_cols=41 Identities=34% Similarity=0.410 Sum_probs=29.8
Q ss_pred CCCcEEEeCcHHHHHHHHhCCCC--CCCccEEEEchhhhhhhc
Q psy18035 51 ASPDIVVATPGRFLHIVVEMELK--LSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~~~~~~--l~~l~~lVlDEaD~ll~~ 91 (104)
..++++|+++..+..-....... +..-+.+|+||||.+-+.
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d~ 235 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPDI 235 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchHH
Confidence 46899999998888533322222 456789999999999664
No 210
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=79.45 E-value=7.9 Score=21.61 Aligned_cols=49 Identities=14% Similarity=-0.015 Sum_probs=24.8
Q ss_pred eEEEehh----HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCc
Q psy18035 7 NYLISFP----IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATP 60 (104)
Q Consensus 7 ~~lil~P----La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP 60 (104)
+++++|| .++-+.+.+++..+..++...+-.... .+ . ..+++|++++|.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~--~~-~--~~~~~DlIisT~ 53 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDL--GS-A--KASSADIIVTSK 53 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEecc--cc-c--CCCCCCEEEEch
Confidence 4789999 444444444444333343322222111 11 1 134689999998
No 211
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=79.29 E-value=1.4 Score=31.32 Aligned_cols=83 Identities=20% Similarity=0.439 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhccC---CceEEEEEcCccHHHH-----HHHhcC--------C-CcEEEeCcH-----HHH-HHHHhC
Q psy18035 14 IVQQTFKFVKELGKFT---KLQSTCLLGGDSMDNQ-----FARLHA--------S-PDIVVATPG-----RFL-HIVVEM 70 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~---~~~~~~~~g~~~~~~~-----~~~l~~--------~-~~IlV~TP~-----~l~-~l~~~~ 70 (104)
-|.++.+.+..+..++ ...+.+++|.++..+. +..... . |=+.|-+|. ++. .++..-
T Consensus 41 ~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 41 RAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 7888888888887664 4668888988764332 222111 1 223444443 233 222211
Q ss_pred C-------------------CCCCCccEEEEchhhhhhhcCcHHH
Q psy18035 71 E-------------------LKLSSIQYVVFDEADRLFEMGFDVE 96 (104)
Q Consensus 71 ~-------------------~~l~~l~~lVlDEaD~ll~~gf~~~ 96 (104)
. +.--.++++|+||.|-++..+..++
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~q 165 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQ 165 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHH
Confidence 0 1234589999999999998876543
No 212
>PF15586 Imm47: Immunity protein 47
Probab=79.08 E-value=2.5 Score=25.79 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=25.4
Q ss_pred CCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhh
Q psy18035 52 SPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEAD 86 (104)
Q Consensus 52 ~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD 86 (104)
..++.|+||..|.+...+..+ +-.=.+||++|.|
T Consensus 44 ~F~v~VcTP~wL~~~~~~~~~-~~gr~~LIv~~yd 77 (116)
T PF15586_consen 44 YFQVFVCTPKWLSKNCWKPGI-LWGRHMLIVEEYD 77 (116)
T ss_pred eEEEEEEcHHHHHHhhcCCcc-eeccceEEEecCC
Confidence 368999999999987776543 2344588998876
No 213
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=78.75 E-value=3.5 Score=27.18 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.2
Q ss_pred CCCCCCCccEEEEchhh
Q psy18035 70 MELKLSSIQYVVFDEAD 86 (104)
Q Consensus 70 ~~~~l~~l~~lVlDEaD 86 (104)
..++.+++.++-+||--
T Consensus 46 ~~i~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 46 ERIDWSRVHFFNVDERV 62 (199)
T ss_dssp TCSCGGGEEEEESEEES
T ss_pred ccCChhHeEEEeCcccc
Confidence 36888999999999954
No 214
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=78.74 E-value=3.9 Score=30.94 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=21.9
Q ss_pred CCCCccE-EEEchhhhhhhcC---cHHHHHhhhh
Q psy18035 73 KLSSIQY-VVFDEADRLFEMG---FDVEQQSPCD 102 (104)
Q Consensus 73 ~l~~l~~-lVlDEaD~ll~~g---f~~~i~~i~~ 102 (104)
+++.-++ |.+||||.+++.- +.++|+++.+
T Consensus 251 D~dkPklVfFfDEAHLLF~da~kall~~ieqvvr 284 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVR 284 (502)
T ss_pred CCCCceEEEEEechhhhhcCCCHHHHHHHHHHHH
Confidence 4666776 5799999999764 6677776653
No 215
>KOG0920|consensus
Probab=78.26 E-value=1.9 Score=35.11 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=29.7
Q ss_pred CcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhh
Q psy18035 53 PDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADR 87 (104)
Q Consensus 53 ~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ 87 (104)
..++.+|-|-|+..+.. .-.++++.++|+||+|.
T Consensus 265 t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHE 298 (924)
T KOG0920|consen 265 TRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHE 298 (924)
T ss_pred eeEEEecHHHHHHHhcc-CcccccCceeeeeeEEE
Confidence 57999999999998887 44589999999999985
No 216
>PRK14701 reverse gyrase; Provisional
Probab=78.21 E-value=5.8 Score=34.42 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=42.7
Q ss_pred CeeEEEehh---H---HHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC-
Q psy18035 5 NINYLISFP---I---VQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSS- 76 (104)
Q Consensus 5 ~~~~lil~P---L---a~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~- 76 (104)
+..+||.|| - |.++.+.++ ..++++..++|+ .....+..+++ .+|+|||-.- . -+-...+++.+
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~----~~Gi~a~~~h~~--R~~~l~~F~~G~~~VLVaT~s~-~-gvaaRGIDiP~~ 401 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLL----EDGFKIELVSAK--NKKGFDLFEEGEIDYLIGVATY-Y-GTLVRGLDLPER 401 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHH----HCCCeEEEecch--HHHHHHHHHcCCCCEEEEecCC-C-CeeEecCccCCc
Confidence 467899999 2 344444443 357898888886 44444555555 8999999300 0 01124566665
Q ss_pred ccEEEE
Q psy18035 77 IQYVVF 82 (104)
Q Consensus 77 l~~lVl 82 (104)
++|.|.
T Consensus 402 Vryvi~ 407 (1638)
T PRK14701 402 IRFAVF 407 (1638)
T ss_pred cCEEEE
Confidence 777776
No 217
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=77.41 E-value=5.8 Score=26.58 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=46.4
Q ss_pred CCceEEEEEcCccHHHHHHHhcC-----CCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 29 TKLQSTCLLGGDSMDNQFARLHA-----SPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 29 ~~~~~~~~~g~~~~~~~~~~l~~-----~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
.+.++.++....+.......+.+ -+-++|-.+..+.+.+......+. ++.+.+|||. .++...-.++..+.+
T Consensus 31 ~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQ-F~~~~~v~~l~~lad 107 (201)
T COG1435 31 AGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQ-FFDEELVYVLNELAD 107 (201)
T ss_pred cCCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcccCCC-cCEEEEehhH-hCCHHHHHHHHHHHh
Confidence 45677777666655544444332 256778888888888876544333 8899999997 455555555555544
No 218
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=77.07 E-value=19 Score=24.05 Aligned_cols=84 Identities=14% Similarity=0.233 Sum_probs=49.0
Q ss_pred HHHHHHHhccC--CceEEEEEcCccHHH---------HHHHhcCCCcEEEeCcHHHHHHH----HhCCC-----CCCCcc
Q psy18035 19 FKFVKELGKFT--KLQSTCLLGGDSMDN---------QFARLHASPDIVVATPGRFLHIV----VEMEL-----KLSSIQ 78 (104)
Q Consensus 19 ~~~~~~l~~~~--~~~~~~~~g~~~~~~---------~~~~l~~~~~IlV~TP~~l~~l~----~~~~~-----~l~~l~ 78 (104)
+..++.++... ......++|+....+ .......+..++.-|...+...+ +.+.. .+...+
T Consensus 20 ~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~D 99 (219)
T PF00308_consen 20 YAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSAD 99 (219)
T ss_dssp HHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSS
T ss_pred HHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCC
Confidence 34444554443 356778888764322 22223345678888877776433 33322 267899
Q ss_pred EEEEchhhhhhhc-CcHHHHHhhhh
Q psy18035 79 YVVFDEADRLFEM-GFDVEQQSPCD 102 (104)
Q Consensus 79 ~lVlDEaD~ll~~-gf~~~i~~i~~ 102 (104)
.+++|..|.+-.. ...+.+..+++
T Consensus 100 lL~iDDi~~l~~~~~~q~~lf~l~n 124 (219)
T PF00308_consen 100 LLIIDDIQFLAGKQRTQEELFHLFN 124 (219)
T ss_dssp EEEEETGGGGTTHHHHHHHHHHHHH
T ss_pred EEEEecchhhcCchHHHHHHHHHHH
Confidence 9999999998654 24555555544
No 219
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=76.62 E-value=9.7 Score=20.44 Aligned_cols=51 Identities=14% Similarity=0.017 Sum_probs=25.5
Q ss_pred eEEEehh----HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcH
Q psy18035 7 NYLISFP----IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPG 61 (104)
Q Consensus 7 ~~lil~P----La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~ 61 (104)
+++++|| .+.-+.+.+++..+..++....-..+.... ....++|++++|+.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~dliitt~~ 55 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV----IDLADADLIISTVP 55 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh----hhcCCccEEEECCc
Confidence 3678888 333333444444434444333322222211 22346899999984
No 220
>PRK13766 Hef nuclease; Provisional
Probab=76.58 E-value=19 Score=28.59 Aligned_cols=73 Identities=18% Similarity=0.335 Sum_probs=48.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcC--------ccHHHHH---HHhcCC-CcEEEeCcHHHHHHHH
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGG--------DSMDNQF---ARLHAS-PDIVVATPGRFLHIVV 68 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~--------~~~~~~~---~~l~~~-~~IlV~TP~~l~~l~~ 68 (104)
++-++||.+. -+.++.+.+.. .++++..++|. ++..++. ...+++ .+++|+|. .-
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~------~~ 433 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEK----EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTS------VA 433 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHh----CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECC------hh
Confidence 4568999999 77887777643 35666777765 3333332 223344 89999996 33
Q ss_pred hCCCCCCCccEEEEchhh
Q psy18035 69 EMELKLSSIQYVVFDEAD 86 (104)
Q Consensus 69 ~~~~~l~~l~~lVlDEaD 86 (104)
...+++.+++++|+=+.+
T Consensus 434 ~eGldi~~~~~VI~yd~~ 451 (773)
T PRK13766 434 EEGLDIPSVDLVIFYEPV 451 (773)
T ss_pred hcCCCcccCCEEEEeCCC
Confidence 456778899998876653
No 221
>PRK09694 helicase Cas3; Provisional
Probab=76.17 E-value=21 Score=29.17 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=44.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHH-------HHHh-cCC----CcEEEeCcHHHHHHHH
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQ-------FARL-HAS----PDIVVATPGRFLHIVV 68 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~-------~~~l-~~~----~~IlV~TP~~l~~l~~ 68 (104)
++-+++|+++ -|+++++.+++.. ....++.+++|.....+. .+.. +++ ..|+|+| ..++
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~-~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaT-----QViE 632 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELN-NTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVAT-----QVVE 632 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhC-CCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEEC-----cchh
Confidence 3457899999 8888887777542 124678889998764433 1222 222 3699999 4444
Q ss_pred hCCCCCCCccEEEEch
Q psy18035 69 EMELKLSSIQYVVFDE 84 (104)
Q Consensus 69 ~~~~~l~~l~~lVlDE 84 (104)
.+ +++ +.+.+|.|-
T Consensus 633 ~G-LDI-d~DvlItdl 646 (878)
T PRK09694 633 QS-LDL-DFDWLITQL 646 (878)
T ss_pred he-eec-CCCeEEECC
Confidence 43 333 346666664
No 222
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=76.11 E-value=23 Score=27.21 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=48.0
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEc--------CccHHHHHHHhc---CC-CcEEEeCcHHHHHHHHhC
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLG--------GDSMDNQFARLH---AS-PDIVVATPGRFLHIVVEM 70 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g--------~~~~~~~~~~l~---~~-~~IlV~TP~~l~~l~~~~ 70 (104)
-+++|.+- -|.-+.+.+.+.+. ..+ ..++| |++-.+|...+. +| .+++|+|. +...
T Consensus 367 ~RvIVFT~yRdTae~i~~~L~~~~~--~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTS------VgEE 437 (542)
T COG1111 367 SRVIVFTEYRDTAEEIVNFLKKIGI--KAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATS------VGEE 437 (542)
T ss_pred ceEEEEehhHhHHHHHHHHHHhcCC--cce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcc------cccc
Confidence 57788887 66666666665432 233 45565 456666665553 44 89999995 5567
Q ss_pred CCCCCCccEEEEchh
Q psy18035 71 ELKLSSIQYVVFDEA 85 (104)
Q Consensus 71 ~~~l~~l~~lVlDEa 85 (104)
.++.-.++++|+=|+
T Consensus 438 GLDIp~vDlVifYEp 452 (542)
T COG1111 438 GLDIPEVDLVIFYEP 452 (542)
T ss_pred cCCCCcccEEEEecC
Confidence 788999999998775
No 223
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=75.71 E-value=19 Score=30.72 Aligned_cols=69 Identities=23% Similarity=0.280 Sum_probs=45.9
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
-.+||.+| -+..+.+.+++.. .....+..++|+.+..++.+.... +..|+|+|. . -...+++.+++++
T Consensus 287 GdILVFLpg~~EIe~lae~L~~~~-~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATN-----I-AEtSITIpgI~yV 359 (1294)
T PRK11131 287 GDILIFMSGEREIRDTADALNKLN-LRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATN-----V-AETSLTVPGIKYV 359 (1294)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhcC-CCcceEeecccCCCHHHHHHHhcccCCeeEEEecc-----H-HhhccccCcceEE
Confidence 35899999 4444444444321 123557788999998888776653 368999994 3 3455778888887
Q ss_pred E
Q psy18035 81 V 81 (104)
Q Consensus 81 V 81 (104)
|
T Consensus 360 I 360 (1294)
T PRK11131 360 I 360 (1294)
T ss_pred E
Confidence 6
No 224
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=75.70 E-value=30 Score=28.61 Aligned_cols=69 Identities=7% Similarity=0.061 Sum_probs=47.7
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cC---CCcEEEeCcHHHHHHHHhCCCCCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA---SPDIVVATPGRFLHIVVEMELKLS 75 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~---~~~IlV~TP~~l~~l~~~~~~~l~ 75 (104)
+.++||++- -+..+.+.++ ...++++..++|+++..+..+.+ .+ ++.|+|+|- +-...+++.
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~---~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd------vgseGlNlq 563 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALR---EREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE------IGSEGRNFQ 563 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHh---hccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech------hhccCCCcc
Confidence 467888888 5555554443 34578999999999866554443 22 488999992 344567888
Q ss_pred CccEEEE
Q psy18035 76 SIQYVVF 82 (104)
Q Consensus 76 ~l~~lVl 82 (104)
.++++|.
T Consensus 564 ~a~~VIn 570 (956)
T PRK04914 564 FASHLVL 570 (956)
T ss_pred cccEEEE
Confidence 8888775
No 225
>PHA02558 uvsW UvsW helicase; Provisional
Probab=75.42 E-value=18 Score=27.31 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=30.1
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVAT 59 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~T 59 (104)
+.+.+|++. =+..+++.++ ..+.++..++|+++.++.... .+++ ..++|+|
T Consensus 344 ~~~~lV~~~~~~h~~~L~~~L~----~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT 401 (501)
T PHA02558 344 GENTFVMFKYVEHGKPLYEMLK----KVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVAS 401 (501)
T ss_pred CCCEEEEEEEHHHHHHHHHHHH----HcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 456777777 3333333333 346789999999886544332 2223 4677777
No 226
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=74.98 E-value=34 Score=26.87 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=49.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHH---HhcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA---RLHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++.+++|+++ -+..+.+.+.+ .++++..+.|+.+..+... ..+++ .+|+||| +.+. ..+++.+
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~----~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t-----~~L~-rGfdlp~ 514 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKE----LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDIPE 514 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhh----cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe-----CHHh-CCccccC
Confidence 4678899998 66655555543 4678888888877543333 33343 7899999 3333 5667899
Q ss_pred ccEEEEchhhh
Q psy18035 77 IQYVVFDEADR 87 (104)
Q Consensus 77 l~~lVlDEaD~ 87 (104)
++++|+=|+|.
T Consensus 515 v~lVii~d~ei 525 (652)
T PRK05298 515 VSLVAILDADK 525 (652)
T ss_pred CcEEEEeCCcc
Confidence 99988777764
No 227
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=74.43 E-value=25 Score=29.76 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=41.9
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
..+||.|. -+.++.+.++ ..++++..++||++..+....+ ....+|+|+|- .+ ...++..+++
T Consensus 681 esgIIYC~SRke~E~LAe~L~----~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATd-----AF-GMGIDkPDVR 750 (1195)
T PLN03137 681 ECGIIYCLSRMDCEKVAERLQ----EFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATV-----AF-GMGINKPDVR 750 (1195)
T ss_pred CCceeEeCchhHHHHHHHHHH----HCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEec-----hh-hcCCCccCCc
Confidence 35677777 4444444333 3578899999998865543332 23489999993 33 3456777777
Q ss_pred EEE
Q psy18035 79 YVV 81 (104)
Q Consensus 79 ~lV 81 (104)
++|
T Consensus 751 ~VI 753 (1195)
T PLN03137 751 FVI 753 (1195)
T ss_pred EEE
Confidence 766
No 228
>KOG0922|consensus
Probab=73.99 E-value=5.1 Score=31.44 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=27.0
Q ss_pred CcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhh
Q psy18035 53 PDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADR 87 (104)
Q Consensus 53 ~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ 87 (104)
..|..-|-|.|+.-+-... .++.-..+|+||||.
T Consensus 141 TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHE 174 (674)
T KOG0922|consen 141 TRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHE 174 (674)
T ss_pred eeEEEecchHHHHHHhcCC-ccccccEEEEechhh
Confidence 4788999999996554333 378899999999995
No 229
>KOG0991|consensus
Probab=73.94 E-value=2.9 Score=29.19 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.1
Q ss_pred CCccEEEEchhhhhhhc
Q psy18035 75 SSIQYVVFDEADRLFEM 91 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~ 91 (104)
..-+.+|+||||-|-+.
T Consensus 112 grhKIiILDEADSMT~g 128 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG 128 (333)
T ss_pred CceeEEEeeccchhhhH
Confidence 66789999999998654
No 230
>PRK04195 replication factor C large subunit; Provisional
Probab=73.78 E-value=36 Score=25.59 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCcc--HHHHHHHhcC--CCcEEEeCcH------HHHHHHHhCC--CC-C-CCccE
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDS--MDNQFARLHA--SPDIVVATPG------RFLHIVVEME--LK-L-SSIQY 79 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~--~~~~~~~l~~--~~~IlV~TP~------~l~~l~~~~~--~~-l-~~l~~ 79 (104)
...++.+.++.+.+....+..+++|... ...-...+.+ +.+++.-++. .+...+.... .. + ..-+.
T Consensus 22 ~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kv 101 (482)
T PRK04195 22 AKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKL 101 (482)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeE
Confidence 4456666666665544467778887543 3333333322 3445444332 2222222211 11 2 25679
Q ss_pred EEEchhhhhhh
Q psy18035 80 VVFDEADRLFE 90 (104)
Q Consensus 80 lVlDEaD~ll~ 90 (104)
+|+||+|.|..
T Consensus 102 IiIDEaD~L~~ 112 (482)
T PRK04195 102 ILLDEVDGIHG 112 (482)
T ss_pred EEEecCccccc
Confidence 99999999865
No 231
>KOG0354|consensus
Probab=73.08 E-value=24 Score=28.38 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=50.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEc--------CccHHHHHHHhc---CC-CcEEEeCcHHHHHHHH
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLG--------GDSMDNQFARLH---AS-PDIVVATPGRFLHIVV 68 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g--------~~~~~~~~~~l~---~~-~~IlV~TP~~l~~l~~ 68 (104)
...|+||.+- .|.-+.+++.++ ...+++...++| |++...|...+. .| .+++|+|. +.
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~-~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATS------V~ 484 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQL-HELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATS------VA 484 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhh-hhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEec------ch
Confidence 4578899888 888888888873 345678888776 344555555543 45 89999994 45
Q ss_pred hCCCCCCCccEEEE
Q psy18035 69 EMELKLSSIQYVVF 82 (104)
Q Consensus 69 ~~~~~l~~l~~lVl 82 (104)
...++...+.++|-
T Consensus 485 EEGLDI~ec~lVIc 498 (746)
T KOG0354|consen 485 EEGLDIGECNLVIC 498 (746)
T ss_pred hccCCcccccEEEE
Confidence 56777888877764
No 232
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=72.58 E-value=23 Score=26.53 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=46.4
Q ss_pred HHHHHHHHhccC--CceEEEEEcCccHHHH--HHH-------hcCCCcEEEeCcHHHHHHHHh------CCC-----CCC
Q psy18035 18 TFKFVKELGKFT--KLQSTCLLGGDSMDNQ--FAR-------LHASPDIVVATPGRFLHIVVE------MEL-----KLS 75 (104)
Q Consensus 18 i~~~~~~l~~~~--~~~~~~~~g~~~~~~~--~~~-------l~~~~~IlV~TP~~l~~l~~~------~~~-----~l~ 75 (104)
.+..++.+++.. ..+...++|+....+. ... ...+..++.-|+..+...+.. +.+ .+.
T Consensus 126 A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 205 (450)
T PRK14087 126 AFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC 205 (450)
T ss_pred HHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 344555555433 3466778886553321 111 123467787887777644321 111 257
Q ss_pred CccEEEEchhhhhhhc-CcHHHHHhhh
Q psy18035 76 SIQYVVFDEADRLFEM-GFDVEQQSPC 101 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~-gf~~~i~~i~ 101 (104)
+.+.|++||+|.+-.. ...+.+..++
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~ 232 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIF 232 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHH
Confidence 7889999999977532 2334444443
No 233
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=72.40 E-value=13 Score=29.52 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=37.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhc--------CCCcEEEeCc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH--------ASPDIVVATP 60 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~~IlV~TP 60 (104)
.+-+++|++- -|+.+|+.++.... ++.++++........+... +++.|+|||.
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~----~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGP----KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCC----CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 3567788888 88888888886554 7888888776544333333 4589999993
No 234
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=72.13 E-value=8.1 Score=23.05 Aligned_cols=57 Identities=12% Similarity=0.359 Sum_probs=29.9
Q ss_pred eeEEEehhHHHHHHHHHHHHhccCC--------------ceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH
Q psy18035 6 INYLISFPIVQQTFKFVKELGKFTK--------------LQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 63 (104)
Q Consensus 6 ~~~lil~PLa~Qi~~~~~~l~~~~~--------------~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l 63 (104)
.-..+..|++..+.+..+.+..+++ +.-...........++.... +|.|+++|+|.+
T Consensus 21 ~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~p~Vvias~gml 91 (126)
T PF10996_consen 21 VPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDNPFDNFKFVKSVDESKELNALS-GPKVVIASSGML 91 (126)
T ss_dssp SEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTTTTTTEEEEESHHHHHHHHHSC-SSEEEEESSTTS
T ss_pred CcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCCCCCCeEEecccccccccccCC-CCeEEEeCCCCC
Confidence 3455556666666666665544432 21112222222223333333 799999999986
No 235
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=71.85 E-value=11 Score=31.50 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=51.0
Q ss_pred CeeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCC-CCCccEE
Q psy18035 5 NINYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELK-LSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~-l~~l~~l 80 (104)
|.-+||.+| +..+..+.+.++.+..++++..+..+. .+.......| .|++||....---+.+ .++ +..++|-
T Consensus 335 G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~--~~~le~F~~GeidvLVGvAsyYG~lVR--GlDLP~rirYa 410 (1187)
T COG1110 335 GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK--EEALEDFEEGEVDVLVGVASYYGVLVR--GLDLPHRIRYA 410 (1187)
T ss_pred CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc--hhhhhhhccCceeEEEEecccccceee--cCCchhheeEE
Confidence 456899999 999999999999888999988887644 4455555556 8999998644333333 222 3455555
Q ss_pred EE
Q psy18035 81 VF 82 (104)
Q Consensus 81 Vl 82 (104)
|+
T Consensus 411 IF 412 (1187)
T COG1110 411 VF 412 (1187)
T ss_pred EE
Confidence 54
No 236
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=70.69 E-value=33 Score=23.86 Aligned_cols=27 Identities=22% Similarity=0.114 Sum_probs=17.1
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
..-+.+++||+|.+-.......+..++
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~l 125 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFM 125 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHH
Confidence 456899999999883322334444444
No 237
>PRK06893 DNA replication initiation factor; Validated
Probab=70.00 E-value=30 Score=23.15 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=19.0
Q ss_pred CCCccEEEEchhhhhhhc-CcHHHHHhhh
Q psy18035 74 LSSIQYVVFDEADRLFEM-GFDVEQQSPC 101 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~-gf~~~i~~i~ 101 (104)
+++.+.+++||.|.+... .++..+..++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~ 117 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLF 117 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHH
Confidence 567889999999988632 3444444444
No 238
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=69.94 E-value=12 Score=24.41 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=24.4
Q ss_pred HHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHH
Q psy18035 23 KELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFL 64 (104)
Q Consensus 23 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~ 64 (104)
+.+++..++++...............+.++ +|++++||.|-.
T Consensus 27 ~~i~~~~g~~i~~~~~~~~~~~~~~~l~~g~~Di~~~~~~r~~ 69 (232)
T TIGR03871 27 QLLADDLGLPLEYTWFPQRRGFVRNTLNAGRCDVVIGVPAGYE 69 (232)
T ss_pred HHHHHHcCCceEEEecCcchhhHHHHHhcCCccEEEeccCccc
Confidence 344445566665554433333333455555 999999987643
No 239
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=69.78 E-value=44 Score=24.94 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=39.9
Q ss_pred HHHHHHhccC-CceEEEEEcCccHHHHH------HHh-c--CCCcEEEeCcHHHHHHH-H---hCCCC-----C-CCccE
Q psy18035 20 KFVKELGKFT-KLQSTCLLGGDSMDNQF------ARL-H--ASPDIVVATPGRFLHIV-V---EMELK-----L-SSIQY 79 (104)
Q Consensus 20 ~~~~~l~~~~-~~~~~~~~g~~~~~~~~------~~l-~--~~~~IlV~TP~~l~~l~-~---~~~~~-----l-~~l~~ 79 (104)
..+.+++... ..+...++|+....+.. ..+ . .+..++..|...+..-+ . .+... + .+.+.
T Consensus 118 ~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dv 197 (440)
T PRK14088 118 HAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDV 197 (440)
T ss_pred HHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCE
Confidence 3444444333 25678888876533211 111 1 23577877877765332 2 12110 1 25789
Q ss_pred EEEchhhhhhhc
Q psy18035 80 VVFDEADRLFEM 91 (104)
Q Consensus 80 lVlDEaD~ll~~ 91 (104)
+++||+|.+.+.
T Consensus 198 LlIDDi~~l~~~ 209 (440)
T PRK14088 198 LLIDDVQFLIGK 209 (440)
T ss_pred EEEechhhhcCc
Confidence 999999988754
No 240
>PRK14873 primosome assembly protein PriA; Provisional
Probab=69.49 E-value=13 Score=29.43 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhc-CcH
Q psy18035 16 QQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEM-GFD 94 (104)
Q Consensus 16 ~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~-gf~ 94 (104)
+++.++++++- .+.++....++ .........++|+|||+|... ++. .++..+++=.||.+|.. +|.
T Consensus 441 er~eeeL~~~F--P~~~V~r~d~d----~~l~~~~~~~~IlVGTqgaep-m~~------g~~~lV~ildaD~~L~~pDfR 507 (665)
T PRK14873 441 RRTAEELGRAF--PGVPVVTSGGD----QVVDTVDAGPALVVATPGAEP-RVE------GGYGAALLLDAWALLGRQDLR 507 (665)
T ss_pred HHHHHHHHHHC--CCCCEEEEChH----HHHHhhccCCCEEEECCCCcc-ccc------CCceEEEEEcchhhhcCCCcC
Confidence 34444555443 24454443322 233444557999999987311 111 25677777789988865 553
No 241
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=69.48 E-value=30 Score=27.03 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=52.9
Q ss_pred eEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHH---HHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 7 NYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQ---FARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
++||.+= +|....+.+. ..++++..++++.+.-+. ++.|+.| .|++||- ++++. .+++-.+.+
T Consensus 448 RvLVTtLTKkmAEdLT~Yl~----e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLRE-GLDiPEVsL 517 (663)
T COG0556 448 RVLVTTLTKKMAEDLTEYLK----ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLRE-GLDLPEVSL 517 (663)
T ss_pred eEEEEeehHHHHHHHHHHHH----hcCceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhhc-cCCCcceeE
Confidence 4444443 6655544444 457999999988876544 4456667 8999998 66664 567899999
Q ss_pred EEEchhhhhhhcCcHHHHH
Q psy18035 80 VVFDEADRLFEMGFDVEQQ 98 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~ 98 (104)
+.+=.||+= ||...-.
T Consensus 518 VAIlDADKe---GFLRse~ 533 (663)
T COG0556 518 VAILDADKE---GFLRSER 533 (663)
T ss_pred EEEeecCcc---ccccccc
Confidence 988788863 5544333
No 242
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=69.28 E-value=14 Score=26.57 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=40.3
Q ss_pred CCeeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhC
Q psy18035 4 ANINYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEM 70 (104)
Q Consensus 4 ~~~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~ 70 (104)
++-+++|++| -..|=.++++.+.+.++.--..+.|+.+ -..+.--.|+.+||.|..+. +.++.+
T Consensus 179 ~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdGaAD---~l~~~GykP~lIvGdp~~i~~~aLR~g 245 (395)
T COG4825 179 RGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGAAD---VLRKAGYKPQLIVGDPDQISTEALRCG 245 (395)
T ss_pred cccEEEEEeCCCChHhHHHHHHHHHHhhCCEEEEccchHH---HHHHcCCCcceeecCcchhhHHHHhcc
Confidence 4678999999 6667677788776654432222333322 22233335999999998887 555544
No 243
>PF13173 AAA_14: AAA domain
Probab=69.07 E-value=4.6 Score=24.36 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=19.2
Q ss_pred CccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 76 SIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
.-.++++||++.+ .++.+.++.+.+
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d 85 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVD 85 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHH
Confidence 5678999999988 356777776665
No 244
>PF12846 AAA_10: AAA-like domain
Probab=68.98 E-value=3 Score=28.29 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=18.6
Q ss_pred CCccEEEEchhhhhhhc-CcHHHHHhhhh
Q psy18035 75 SSIQYVVFDEADRLFEM-GFDVEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~-gf~~~i~~i~~ 102 (104)
..-.++++||||.+++. ...+.+.++++
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~ 247 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLR 247 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHH
Confidence 34457799999999987 34444444443
No 245
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=68.63 E-value=22 Score=24.09 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=19.9
Q ss_pred CcHHHHHHHH----hCCCCCCCccEEEEchh
Q psy18035 59 TPGRFLHIVV----EMELKLSSIQYVVFDEA 85 (104)
Q Consensus 59 TP~~l~~l~~----~~~~~l~~l~~lVlDEa 85 (104)
||..+.+.+- ...++.+++.++-+||-
T Consensus 39 tP~~~y~~L~~~~~~~~l~w~~v~~f~~DE~ 69 (232)
T PRK09762 39 TPLLTYHYLVEKIHQQQVDVSQLTFVKLDEW 69 (232)
T ss_pred CHHHHHHHHHHHHhhcCCCHHHeEEEcCcEE
Confidence 6666665554 35788899999999994
No 246
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=68.52 E-value=19 Score=27.25 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=22.1
Q ss_pred eCcHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 58 ATPGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 58 ~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
-.||.+.++++...-+..+-..+++||.++--
T Consensus 254 ~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 254 RKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred ecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 35677777766544445556789999999764
No 247
>KOG1132|consensus
Probab=68.36 E-value=7 Score=31.80 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=29.2
Q ss_pred HHhcCCCcEEEeCcHHHHHHHHh--CCCCCCCccEEEEchhhhhhh
Q psy18035 47 ARLHASPDIVVATPGRFLHIVVE--MELKLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 47 ~~l~~~~~IlV~TP~~l~~l~~~--~~~~l~~l~~lVlDEaD~ll~ 90 (104)
+.+...+||+.+-=.-|++-.-. ..+++++ ..+|+||||.|-+
T Consensus 217 R~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHNiEd 261 (945)
T KOG1132|consen 217 RELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHNIED 261 (945)
T ss_pred hhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccccHHH
Confidence 33455689998877777744433 3466655 4789999999743
No 248
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=67.85 E-value=28 Score=24.96 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=11.0
Q ss_pred ccEEEEchhhhhh
Q psy18035 77 IQYVVFDEADRLF 89 (104)
Q Consensus 77 l~~lVlDEaD~ll 89 (104)
--.+|+||+|.+.
T Consensus 139 ~~viviDE~d~l~ 151 (394)
T PRK00411 139 VLIVALDDINYLF 151 (394)
T ss_pred EEEEEECCHhHhh
Confidence 3478999999998
No 249
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=66.77 E-value=19 Score=28.41 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=18.5
Q ss_pred eEEEehh---HHHHHHHHHHHHhc
Q psy18035 7 NYLISFP---IVQQTFKFVKELGK 27 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~ 27 (104)
..||++| +|.|.++.++.+..
T Consensus 56 p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 56 PTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred CEEEEECCHHHHHHHHHHHHHhCC
Confidence 4799999 99999999998864
No 250
>PRK05642 DNA replication initiation factor; Validated
Probab=65.43 E-value=39 Score=22.76 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=41.0
Q ss_pred eEEEEEcCccHHH--HHHH-----hcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhc-CcHHHHHhhhh
Q psy18035 32 QSTCLLGGDSMDN--QFAR-----LHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEM-GFDVEQQSPCD 102 (104)
Q Consensus 32 ~~~~~~g~~~~~~--~~~~-----l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~-gf~~~i~~i~~ 102 (104)
+...++|.....+ -... ...+..++..+...+......-.-.+.+.+.+++|+.|.+-.. .+++.+..+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n 124 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFN 124 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHH
Confidence 5567777554322 1222 2235677777777766432211113567789999999977533 45666666665
No 251
>PRK08727 hypothetical protein; Validated
Probab=65.37 E-value=27 Score=23.48 Aligned_cols=61 Identities=10% Similarity=-0.051 Sum_probs=33.3
Q ss_pred ceEEEEEcCccHHHH--HH-----HhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhc
Q psy18035 31 LQSTCLLGGDSMDNQ--FA-----RLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 31 ~~~~~~~g~~~~~~~--~~-----~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~ 91 (104)
.....++|+....+. .. ....+..++..+...+...+..-.-.+.+...+|+||+|.+...
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQ 108 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCC
Confidence 345777876543322 11 12235565555554444332221113567789999999987643
No 252
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=64.39 E-value=12 Score=29.13 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=19.2
Q ss_pred eEEEehh---HHHHHHHHHHHHhcc
Q psy18035 7 NYLISFP---IVQQTFKFVKELGKF 28 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~~ 28 (104)
-+||++| ||.|.+++++++-..
T Consensus 59 PtLV~AhNKTLAaQLy~Efk~fFP~ 83 (663)
T COG0556 59 PTLVLAHNKTLAAQLYSEFKEFFPE 83 (663)
T ss_pred CeEEEecchhHHHHHHHHHHHhCcC
Confidence 3799999 999999999998554
No 253
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=64.13 E-value=51 Score=24.02 Aligned_cols=73 Identities=11% Similarity=0.219 Sum_probs=38.9
Q ss_pred HHHHHHHhccC--CceEEEEEcCccHHHH--HHH----h-cC--CCcEEEeCcHHHHHHH----HhCCC-----CCCCcc
Q psy18035 19 FKFVKELGKFT--KLQSTCLLGGDSMDNQ--FAR----L-HA--SPDIVVATPGRFLHIV----VEMEL-----KLSSIQ 78 (104)
Q Consensus 19 ~~~~~~l~~~~--~~~~~~~~g~~~~~~~--~~~----l-~~--~~~IlV~TP~~l~~l~----~~~~~-----~l~~l~ 78 (104)
+..+++++... ......++|.....+. ... + .+ +..++..|...+...+ ..+.. .+++.+
T Consensus 122 ~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 201 (405)
T TIGR00362 122 HAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVD 201 (405)
T ss_pred HHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 34455554443 2456778886543321 111 1 11 4567776766654322 11111 245678
Q ss_pred EEEEchhhhhhhc
Q psy18035 79 YVVFDEADRLFEM 91 (104)
Q Consensus 79 ~lVlDEaD~ll~~ 91 (104)
.|++||+|.+...
T Consensus 202 lLiiDDi~~l~~~ 214 (405)
T TIGR00362 202 LLLIDDIQFLAGK 214 (405)
T ss_pred EEEEehhhhhcCC
Confidence 9999999987644
No 254
>cd00949 FBP_aldolase_I_bact Fructose-1.6-bisphosphate aldolase found in gram +/- bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). The enzyme is member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=63.94 E-value=22 Score=25.21 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=27.8
Q ss_pred ceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHH
Q psy18035 31 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLH 65 (104)
Q Consensus 31 ~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~ 65 (104)
+|++.+.||.+..+.-..|.+++.++-+-.-.|.+
T Consensus 231 ~rvvalsggysr~~a~~~l~~n~g~iasfsral~e 265 (292)
T cd00949 231 LRVVALSGGYSREEANELLAKNNGVIASFSRALTE 265 (292)
T ss_pred EEEEEcCCCcCHHHHHHHHhhCCCcEEEehHHhhC
Confidence 68888999999999989998888877666544443
No 255
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=63.67 E-value=22 Score=19.38 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=25.3
Q ss_pred eeEEEehh----HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh-cCCCcEEEeCc
Q psy18035 6 INYLISFP----IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL-HASPDIVVATP 60 (104)
Q Consensus 6 ~~~lil~P----La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l-~~~~~IlV~TP 60 (104)
++++++|+ .+.-+.+.+++..+.... ...+ +.. +.... ..++|++++|-
T Consensus 1 ~kilivC~~G~~~s~~l~~~l~~~~~~~~~--v~~~---~~~-~~~~~~~~~~DlIitT~ 54 (85)
T cd05568 1 KKALVVCPSGIGTSRLLKSKLKKLFPEIEI--IDVI---SLR-ELEEVDLDDYDLIISTV 54 (85)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHCCCceE--EEEE---eHH-HHhhCcccCCCEEEEcc
Confidence 36899999 444444444444332222 1111 222 22222 34689999995
No 256
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=63.30 E-value=4.6 Score=26.00 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=20.6
Q ss_pred CCccEEEEchhhhh--hhcCcHHHHHhhhhc
Q psy18035 75 SSIQYVVFDEADRL--FEMGFDVEQQSPCDT 103 (104)
Q Consensus 75 ~~l~~lVlDEaD~l--l~~gf~~~i~~i~~~ 103 (104)
++.+++|+||.-.| .+.+|.+.+..+++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~s 124 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLDS 124 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHCT
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHcC
Confidence 57789999999888 355799999998874
No 257
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=63.22 E-value=49 Score=24.56 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=40.3
Q ss_pred HHHHHHHHhccC--CceEEEEEcCccHHHH--HHH----h-cC--CCcEEEeCcHHHHHHH----HhCC---C--CCCCc
Q psy18035 18 TFKFVKELGKFT--KLQSTCLLGGDSMDNQ--FAR----L-HA--SPDIVVATPGRFLHIV----VEME---L--KLSSI 77 (104)
Q Consensus 18 i~~~~~~l~~~~--~~~~~~~~g~~~~~~~--~~~----l-~~--~~~IlV~TP~~l~~l~----~~~~---~--~l~~l 77 (104)
.+..+++++... ..+...++|.....+. ... + .+ +..++..|...+..-+ +.+. + .+++.
T Consensus 133 a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
T PRK00149 133 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSV 212 (450)
T ss_pred HHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcC
Confidence 344555555443 3466788886543321 111 1 12 4567766766654322 2111 1 24578
Q ss_pred cEEEEchhhhhhhc
Q psy18035 78 QYVVFDEADRLFEM 91 (104)
Q Consensus 78 ~~lVlDEaD~ll~~ 91 (104)
+.|++||+|.+-..
T Consensus 213 dlLiiDDi~~l~~~ 226 (450)
T PRK00149 213 DVLLIDDIQFLAGK 226 (450)
T ss_pred CEEEEehhhhhcCC
Confidence 89999999987543
No 258
>KOG0990|consensus
Probab=62.63 E-value=4.5 Score=29.30 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=12.6
Q ss_pred CccEEEEchhhhhh
Q psy18035 76 SIQYVVFDEADRLF 89 (104)
Q Consensus 76 ~l~~lVlDEaD~ll 89 (104)
..+++|+||||.|-
T Consensus 131 ~fKlvILDEADaMT 144 (360)
T KOG0990|consen 131 AFKLVILDEADAMT 144 (360)
T ss_pred ceeEEEecchhHhh
Confidence 68999999999984
No 259
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=60.43 E-value=31 Score=20.00 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=12.6
Q ss_pred CCCccEEEEchhhhh
Q psy18035 74 LSSIQYVVFDEADRL 88 (104)
Q Consensus 74 l~~l~~lVlDEaD~l 88 (104)
..+...+++||+|.+
T Consensus 82 ~~~~~~lilDe~~~~ 96 (151)
T cd00009 82 KAKPGVLFIDEIDSL 96 (151)
T ss_pred cCCCeEEEEeChhhh
Confidence 456789999999987
No 260
>KOG0989|consensus
Probab=60.23 E-value=4.9 Score=28.94 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=14.1
Q ss_pred CCccEEEEchhhhhhhcC
Q psy18035 75 SSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~g 92 (104)
+.-+.+|+||||.|-+..
T Consensus 128 ~~fKiiIlDEcdsmtsda 145 (346)
T KOG0989|consen 128 PPFKIIILDECDSMTSDA 145 (346)
T ss_pred CcceEEEEechhhhhHHH
Confidence 445899999999996543
No 261
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=59.63 E-value=18 Score=29.27 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=30.0
Q ss_pred CeeEEEehh---HHHHHHH-HHHHHhccCC--ceEEEEEcCccH
Q psy18035 5 NINYLISFP---IVQQTFK-FVKELGKFTK--LQSTCLLGGDSM 42 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~-~~~~l~~~~~--~~~~~~~g~~~~ 42 (104)
+-+++|.+| |..|+.. .+..+.+..+ +++.++.|+.+.
T Consensus 292 ~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~y 335 (850)
T TIGR01407 292 EKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNY 335 (850)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhh
Confidence 458999999 9999854 7777777654 888999988764
No 262
>PRK07952 DNA replication protein DnaC; Validated
Probab=58.93 E-value=56 Score=22.41 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=46.9
Q ss_pred HHHHHHHHhccC--CceEEEEEcCccHHH--HH----HH-hcCCCcEEEeCcHHHHHHHHhC----CC-------CCCCc
Q psy18035 18 TFKFVKELGKFT--KLQSTCLLGGDSMDN--QF----AR-LHASPDIVVATPGRFLHIVVEM----EL-------KLSSI 77 (104)
Q Consensus 18 i~~~~~~l~~~~--~~~~~~~~g~~~~~~--~~----~~-l~~~~~IlV~TP~~l~~l~~~~----~~-------~l~~l 77 (104)
....+.++++.. +....+++|+....+ -. .. ...+..+++.|-..+...++.. .. .+.+.
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNV 163 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccC
Confidence 455555555432 234566777543222 11 11 2346677777777776544321 11 25789
Q ss_pred cEEEEchhhhhhhcCcHHH-HHhhhh
Q psy18035 78 QYVVFDEADRLFEMGFDVE-QQSPCD 102 (104)
Q Consensus 78 ~~lVlDEaD~ll~~gf~~~-i~~i~~ 102 (104)
++|||||.+..-...|..+ +..|++
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~ 189 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVD 189 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 9999999998765555543 334443
No 263
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=58.73 E-value=6.4 Score=25.66 Aligned_cols=16 Identities=31% Similarity=0.465 Sum_probs=12.3
Q ss_pred CccEEEEchhhhhhhc
Q psy18035 76 SIQYVVFDEADRLFEM 91 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~ 91 (104)
.=..+|+|||+..+..
T Consensus 79 ~~~liviDEa~~~~~~ 94 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPS 94 (193)
T ss_dssp TT-EEEETTGGGTSB-
T ss_pred CCcEEEEECChhhcCC
Confidence 4568999999999866
No 264
>KOG0341|consensus
Probab=58.38 E-value=48 Score=25.07 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=45.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
..|-+||.+- =+.-|++.+- .-++..+.+.||.+.++.... .+.+ -|++|+|- +-++.++|.+
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLL----lKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD------VASKGLDFp~ 489 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLL----LKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD------VASKGLDFPD 489 (610)
T ss_pred CCCceEEEeccccChHHHHHHHH----HccceeEEeecCcchhHHHHHHHHHhcCCCceEEEec------chhccCCCcc
Confidence 4577788877 3444444322 346888999999876554433 3444 79999994 4466778888
Q ss_pred ccEEE
Q psy18035 77 IQYVV 81 (104)
Q Consensus 77 l~~lV 81 (104)
++++|
T Consensus 490 iqHVI 494 (610)
T KOG0341|consen 490 IQHVI 494 (610)
T ss_pred chhhc
Confidence 88765
No 265
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=58.04 E-value=43 Score=22.90 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=53.6
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh---CCCCCCCccEEEEchhhhhhhcC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE---MELKLSSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~---~~~~l~~l~~lVlDEaD~ll~~g 92 (104)
+.++...+.+.++.++-+-.|-.....+.. +++.||+.|+...-...+-+ +.++.++++-+-+-|+-.+...|
T Consensus 35 L~~vA~~~~ektg~kVnvt~GPq~tW~~kA--kknADilfgaseqsalaia~~~~~~fs~~~i~ply~R~aiIlvkkg 110 (252)
T COG4588 35 LKDVAKKYEEKTGIKVNVTAGPQATWNEKA--KKNADILFGASEQSALAIAEDHKDSFSEKNIQPLYLRPAIILVKKG 110 (252)
T ss_pred HHHHHHHHHHHhCeEEEEecCCcchhhhhh--hccCceeecccHHHHHHHHHhccccccccccceeeeeceEEEecCC
Confidence 456777888889999988888777655432 35689999999887755433 23778888888888877666554
No 266
>KOG0926|consensus
Probab=57.99 E-value=22 Score=29.27 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=28.3
Q ss_pred CCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhh
Q psy18035 52 SPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADR 87 (104)
Q Consensus 52 ~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ 87 (104)
...|-..|-|-|+.=+.+. +.++.-..+|+||||.
T Consensus 349 ~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 349 DTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHE 383 (1172)
T ss_pred CceeEEecchHHHHHHHHh-HhhhhceeEEechhhh
Confidence 3579999999999766654 3478888999999995
No 267
>KOG1000|consensus
Probab=57.67 E-value=53 Score=25.60 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=21.1
Q ss_pred CcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhc
Q psy18035 53 PDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 53 ~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~ 91 (104)
+.|.|-+=..+..+-. .+.-..-+.+|+||.|.|=+.
T Consensus 287 ~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s 323 (689)
T KOG1000|consen 287 NTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS 323 (689)
T ss_pred CeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc
Confidence 3455555444333222 222344789999999987554
No 268
>KOG0742|consensus
Probab=57.62 E-value=69 Score=24.54 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=47.3
Q ss_pred eeEEEehh-HHHHHHHHHHHHhc----cCCceEEEEEc--CccHHHHHHH--hcCCCcEEEeCcHHHH-----------H
Q psy18035 6 INYLISFP-IVQQTFKFVKELGK----FTKLQSTCLLG--GDSMDNQFAR--LHASPDIVVATPGRFL-----------H 65 (104)
Q Consensus 6 ~~~lil~P-La~Qi~~~~~~l~~----~~~~~~~~~~g--~~~~~~~~~~--l~~~~~IlV~TP~~l~-----------~ 65 (104)
.-.+||-| |...|.+....-+. ...++-.++|| |+...-..+. .++|.|-.+.|-|-+. .
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~ 433 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHK 433 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHH
Confidence 45688999 87777666554432 23577788887 3333322233 3456777777766432 2
Q ss_pred HHHhCCCCCCCccEEEEchhhhhhh
Q psy18035 66 IVVEMELKLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 66 l~~~~~~~l~~l~~lVlDEaD~ll~ 90 (104)
++.-.+-+-+. =++.|||||-+|-
T Consensus 434 lFDWakkS~rG-LllFIDEADAFLc 457 (630)
T KOG0742|consen 434 LFDWAKKSRRG-LLLFIDEADAFLC 457 (630)
T ss_pred HHHHHhhcccc-eEEEehhhHHHHH
Confidence 22111111111 2678999999874
No 269
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=57.40 E-value=33 Score=24.35 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=27.7
Q ss_pred ceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHH
Q psy18035 31 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLH 65 (104)
Q Consensus 31 ~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~ 65 (104)
++++.+.||.+..+.-..|.++..++-+-.-.|.+
T Consensus 234 ~rvVaLSGGysr~eA~~~L~~n~g~iASfSRal~e 268 (296)
T PRK05377 234 LRVVALSGGYSRDEANELLARNHGLIASFSRALTE 268 (296)
T ss_pred eEEEEccCCcCHHHHHHHHhhCCCcEEEehHHhhC
Confidence 67888999999999999999888877666544443
No 270
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=56.22 E-value=37 Score=23.01 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=10.7
Q ss_pred CCCCCccEEEEch
Q psy18035 72 LKLSSIQYVVFDE 84 (104)
Q Consensus 72 ~~l~~l~~lVlDE 84 (104)
...+++.++-+||
T Consensus 55 ~~w~~v~~f~~DE 67 (239)
T PRK12358 55 AWYDNVHYYNFDE 67 (239)
T ss_pred CCHHHcEEEeccc
Confidence 3478899999999
No 271
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=55.94 E-value=42 Score=21.40 Aligned_cols=12 Identities=33% Similarity=0.268 Sum_probs=7.7
Q ss_pred CCCCccEEEEch
Q psy18035 73 KLSSIQYVVFDE 84 (104)
Q Consensus 73 ~l~~l~~lVlDE 84 (104)
+.+++.++-.||
T Consensus 47 ~w~~v~~f~~DE 58 (169)
T cd00458 47 EISDIVGFPTDE 58 (169)
T ss_pred CccceEEEECcc
Confidence 456666666666
No 272
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=55.79 E-value=85 Score=23.54 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=40.6
Q ss_pred CceEEEEEcCccHHHH--H----HHh-cCCCcEEEeCcHHHHHHH----HhCCC-----CCCCccEEEEchhhhhhhcC-
Q psy18035 30 KLQSTCLLGGDSMDNQ--F----ARL-HASPDIVVATPGRFLHIV----VEMEL-----KLSSIQYVVFDEADRLFEMG- 92 (104)
Q Consensus 30 ~~~~~~~~g~~~~~~~--~----~~l-~~~~~IlV~TP~~l~~l~----~~~~~-----~l~~l~~lVlDEaD~ll~~g- 92 (104)
..+...++|+....+. . ..+ ..+..++..|...+...+ +.+.. .++..+.+++||+|.+-...
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChh
Confidence 3567888887653321 1 111 235778877776655332 22211 15778899999999876432
Q ss_pred cHHHHHhh
Q psy18035 93 FDVEQQSP 100 (104)
Q Consensus 93 f~~~i~~i 100 (104)
..+++..+
T Consensus 220 ~qeelf~l 227 (445)
T PRK12422 220 TQEEFFHT 227 (445)
T ss_pred hHHHHHHH
Confidence 23344443
No 273
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=55.72 E-value=9.3 Score=24.72 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=17.3
Q ss_pred cEEEEchhhhhh-h----cCcHHHHHhhhh
Q psy18035 78 QYVVFDEADRLF-E----MGFDVEQQSPCD 102 (104)
Q Consensus 78 ~~lVlDEaD~ll-~----~gf~~~i~~i~~ 102 (104)
-.+|+||+|.+. . .++...+.++++
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLD 149 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence 688999999999 2 245555555543
No 274
>KOG3055|consensus
Probab=53.67 E-value=14 Score=24.96 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=29.9
Q ss_pred CCeeEEEehhHHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeC
Q psy18035 4 ANINYLISFPIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVAT 59 (104)
Q Consensus 4 ~~~~~lil~PLa~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~T 59 (104)
.|..++.|-|.++..... .+-.+++ ...+-||.+...-.+++..+ .+++|++
T Consensus 59 ~G~HVImLGPn~~~AA~~--ALh~~Pg--~LQvGGGIN~~Nc~~wl~egASkVIVTS 111 (263)
T KOG3055|consen 59 TGGHVIMLGPNSQAAAIG--ALHAYPG--GLQVGGGINSENCMSWLEEGASKVIVTS 111 (263)
T ss_pred CcceEEEECCCcHHHHHH--HHHhCCC--ceeecCccChHHHHHHHHhcCceEEEEE
Confidence 456677788833322221 2222222 12345888999999999987 4566554
No 275
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=53.47 E-value=19 Score=23.49 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=21.9
Q ss_pred CCCccEEEEchhhhhhhcCc--HHHHHhhhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGF--DVEQQSPCD 102 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf--~~~i~~i~~ 102 (104)
-...+++|+||+-..++.|+ ++++..+++
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~ 125 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQ 125 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHH
Confidence 35788999999999999986 445555544
No 276
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=53.20 E-value=65 Score=21.40 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=22.5
Q ss_pred CCCccEEEEchhhhhhhcCc--HHHHHhhhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGF--DVEQQSPCD 102 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf--~~~i~~i~~ 102 (104)
-...+++|+||.-..++.|+ .+++.++++
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~ 143 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALN 143 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHH
Confidence 36688999999999999997 555555554
No 277
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=52.84 E-value=15 Score=23.33 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=24.3
Q ss_pred CCCcEEEeCcHHH---------HHHHHhCCCC--CCCccEEEEchhhhhhhc
Q psy18035 51 ASPDIVVATPGRF---------LHIVVEMELK--LSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 51 ~~~~IlV~TP~~l---------~~l~~~~~~~--l~~l~~lVlDEaD~ll~~ 91 (104)
..+|+.+-.|..- .++...-... -..-|.+|+||||.|-..
T Consensus 66 ~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~ 117 (162)
T PF13177_consen 66 NHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE 117 (162)
T ss_dssp -CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH
T ss_pred cCcceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH
Confidence 3588887776632 1222221111 257889999999998654
No 278
>KOG0953|consensus
Probab=52.79 E-value=45 Score=26.27 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhccCCceEEEEEcCccHH---HHHHHhc---CCCcEEEeC
Q psy18035 16 QQTFKFVKELGKFTKLQSTCLLGGDSMD---NQFARLH---ASPDIVVAT 59 (104)
Q Consensus 16 ~Qi~~~~~~l~~~~~~~~~~~~g~~~~~---~~~~~l~---~~~~IlV~T 59 (104)
..|+.+-+++-+..+-+++++||+.+.+ .|...-. +.++|+|+|
T Consensus 367 k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs 416 (700)
T KOG0953|consen 367 KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS 416 (700)
T ss_pred hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee
Confidence 4566677777777788899999998743 3333332 238999999
No 279
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=52.59 E-value=37 Score=26.70 Aligned_cols=22 Identities=18% Similarity=0.076 Sum_probs=18.7
Q ss_pred eeEEEehh---HHHHHHHHHHHHhc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGK 27 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~ 27 (104)
...||++| .|.|+++.++.+..
T Consensus 58 r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 58 RPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhcC
Confidence 45899999 99999999988854
No 280
>KOG2170|consensus
Probab=52.09 E-value=7.6 Score=27.97 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=12.6
Q ss_pred CCCccEEEEchhhhhh
Q psy18035 74 LSSIQYVVFDEADRLF 89 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll 89 (104)
-..=..||+||+|+|=
T Consensus 176 ~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 176 ACQRSLFIFDEVDKLP 191 (344)
T ss_pred hcCCceEEechhhhcC
Confidence 3455689999999983
No 281
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=52.05 E-value=63 Score=26.41 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=27.5
Q ss_pred cEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhcCcHHHHH
Q psy18035 54 DIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEMGFDVEQQ 98 (104)
Q Consensus 54 ~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~gf~~~i~ 98 (104)
+-++..-..|..+- .-.+++-+.+|+||+...+..=|.+.++
T Consensus 123 ~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~ 164 (824)
T PF02399_consen 123 DRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMR 164 (824)
T ss_pred CeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHh
Confidence 45555555555442 2246678899999999998875544444
No 282
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=52.02 E-value=73 Score=25.81 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=33.3
Q ss_pred EEEcCccHHHHHHHhcCCCcEEEe-CcHHHHHHHHhCCCCCCCccEEEEchhhhhhhc
Q psy18035 35 CLLGGDSMDNQFARLHASPDIVVA-TPGRFLHIVVEMELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 35 ~~~g~~~~~~~~~~l~~~~~IlV~-TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~ 91 (104)
...||..-+.+++-- -.--|| -|||+..-+++... .--.+++||.|.|-+.
T Consensus 381 ~sLGGvrDEAEIRGH---RRTYIGamPGrIiQ~mkka~~---~NPv~LLDEIDKm~ss 432 (782)
T COG0466 381 ISLGGVRDEAEIRGH---RRTYIGAMPGKIIQGMKKAGV---KNPVFLLDEIDKMGSS 432 (782)
T ss_pred EecCccccHHHhccc---cccccccCChHHHHHHHHhCC---cCCeEEeechhhccCC
Confidence 345787766655433 233444 89999988776432 1237899999999654
No 283
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=51.44 E-value=9.5 Score=25.05 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=20.3
Q ss_pred CCCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
.....++++||.|.=||......+-.++.
T Consensus 156 ~~~~p~~ilDEvd~~LD~~~~~~l~~~l~ 184 (220)
T PF02463_consen 156 YKPSPFLILDEVDAALDEQNRKRLADLLK 184 (220)
T ss_dssp CS--SEEEEESTTTTS-HHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc
Confidence 35678999999999999877776665554
No 284
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=51.32 E-value=45 Score=24.10 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhccCCceEEEE----EcC---ccHHHHHHHhc-CCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEch
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCL----LGG---DSMDNQFARLH-ASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDE 84 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~----~g~---~~~~~~~~~l~-~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDE 84 (104)
--+|.+.-.+...+..++.+... ..+ .......+.+. .+.+++++|--++.+.+++-.-.+.+++|.++|.
T Consensus 51 ~n~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~~lI~~~gf~~~d~~~~va~~~Pd~~F~iid~ 129 (345)
T COG1744 51 FNQSAYEGLLKAKKELGLKVETYYWEYVQSDSEADYERALRALAEDGYDLIFGTGFAFSDALEKVAAEYPDVKFVIIDG 129 (345)
T ss_pred hhHHHHHHHHHHHHHhCCceEeeeeeecCCcchhHHHHHHHHHHhcCCCEEEEeccchhhHHHHHHHHCCCCEEEEecC
Confidence 56677777777777777666552 222 23334444443 5789999999999988887666678999999998
No 285
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=51.30 E-value=1.1e+02 Score=24.20 Aligned_cols=72 Identities=10% Similarity=0.182 Sum_probs=40.6
Q ss_pred ceEEEEEcCccHHHH--H-------HHhcCCCcEEEeCcHHHH-HHHH---hCC-----CCCCCccEEEEchhhhhhhcC
Q psy18035 31 LQSTCLLGGDSMDNQ--F-------ARLHASPDIVVATPGRFL-HIVV---EME-----LKLSSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 31 ~~~~~~~g~~~~~~~--~-------~~l~~~~~IlV~TP~~l~-~l~~---~~~-----~~l~~l~~lVlDEaD~ll~~g 92 (104)
.+...++|+....+. . .....+..++..|...+. ++.. .+. -.+.+++.|+||+.|.+....
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH
Confidence 455778886543221 1 111235677777777665 3322 121 125678999999999886542
Q ss_pred -cHHHHHhhhh
Q psy18035 93 -FDVEQQSPCD 102 (104)
Q Consensus 93 -f~~~i~~i~~ 102 (104)
..+.+..+++
T Consensus 394 ~tqeeLF~l~N 404 (617)
T PRK14086 394 STQEEFFHTFN 404 (617)
T ss_pred HHHHHHHHHHH
Confidence 3445555544
No 286
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=51.17 E-value=55 Score=27.32 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=24.7
Q ss_pred CCcEEEeCcHHHHHH-H-H--------hCC-CC---CCCcc-EEEEchhhhhhh
Q psy18035 52 SPDIVVATPGRFLHI-V-V--------EME-LK---LSSIQ-YVVFDEADRLFE 90 (104)
Q Consensus 52 ~~~IlV~TP~~l~~l-~-~--------~~~-~~---l~~l~-~lVlDEaD~ll~ 90 (104)
..+|++.|-+.+..- . + .+. .. ++..+ .+|+||+|.+-.
T Consensus 162 ~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~ 215 (986)
T PRK15483 162 TIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR 215 (986)
T ss_pred ceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc
Confidence 479999999988742 2 1 111 11 33344 679999999844
No 287
>KOG1133|consensus
Probab=50.91 E-value=8.8 Score=30.62 Aligned_cols=37 Identities=27% Similarity=0.501 Sum_probs=21.7
Q ss_pred CcEEEeCcHHHH-HHHHh--CCCCCCCccEEEEchhhhhhhc
Q psy18035 53 PDIVVATPGRFL-HIVVE--MELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 53 ~~IlV~TP~~l~-~l~~~--~~~~l~~l~~lVlDEaD~ll~~ 91 (104)
+++ |.-|-.++ +--.. -.+++++ ..+|+||||.++|.
T Consensus 324 aql-V~LPYQ~LL~~stR~slgI~Lkd-sIvIiDEAHNlidt 363 (821)
T KOG1133|consen 324 AQL-VTLPYQLLLHESTRKSLGISLKD-SIVIIDEAHNLIDT 363 (821)
T ss_pred ccE-EeccHHHHHhHHHHHhcCccccc-cEEEEechhHHHHH
Confidence 444 44555544 22222 2345544 47899999999864
No 288
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=50.29 E-value=10 Score=30.71 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=16.9
Q ss_pred CCccEEEEchhhhhhhcCcHHHH
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQ 97 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i 97 (104)
.+-|.+||||+|+|-...|..-+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALL 140 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAML 140 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHH
Confidence 45689999999998765554433
No 289
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=50.06 E-value=71 Score=21.82 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=10.5
Q ss_pred CCCCCCCccEEEEch
Q psy18035 70 MELKLSSIQYVVFDE 84 (104)
Q Consensus 70 ~~~~l~~l~~lVlDE 84 (104)
+.++.+++.++-+||
T Consensus 59 ~~i~w~~v~if~~DE 73 (253)
T PTZ00285 59 GRVSFSNVVTFNMDE 73 (253)
T ss_pred cCCchhHeEEECCcE
Confidence 456677777777777
No 290
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=49.99 E-value=12 Score=21.42 Aligned_cols=29 Identities=14% Similarity=-0.051 Sum_probs=20.0
Q ss_pred CCCCccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 73 KLSSIQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 73 ~l~~l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
.-..++++++|||--=+|......+-.++
T Consensus 60 ~~~~~~~l~lDEaF~~lD~~~~~~~~~~l 88 (90)
T PF13558_consen 60 RGDSPRLLFLDEAFSKLDEENIERLMDLL 88 (90)
T ss_dssp S-TTBSEEEEESTTTTCGHHHHHHHHHHH
T ss_pred CCCCcCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 45789999999997666665555555444
No 291
>KOG2004|consensus
Probab=49.90 E-value=32 Score=27.90 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=32.1
Q ss_pred EcCccHHHHHHHhcCCCcEEEe-CcHHHHHHHHhCCCCCCCccEEEEchhhhhhhcCc
Q psy18035 37 LGGDSMDNQFARLHASPDIVVA-TPGRFLHIVVEMELKLSSIQYVVFDEADRLFEMGF 93 (104)
Q Consensus 37 ~g~~~~~~~~~~l~~~~~IlV~-TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~gf 93 (104)
+||+.-..+++ .+..--|| -|||+..-+++-.. +--.+.+||.|++- .|+
T Consensus 471 vGG~tDvAeIk---GHRRTYVGAMPGkiIq~LK~v~t---~NPliLiDEvDKlG-~g~ 521 (906)
T KOG2004|consen 471 VGGMTDVAEIK---GHRRTYVGAMPGKIIQCLKKVKT---ENPLILIDEVDKLG-SGH 521 (906)
T ss_pred ccccccHHhhc---ccceeeeccCChHHHHHHHhhCC---CCceEEeehhhhhC-CCC
Confidence 46665444433 23344454 89999999886443 22378899999997 444
No 292
>PF14516 AAA_35: AAA-like domain
Probab=49.55 E-value=14 Score=26.31 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=20.6
Q ss_pred EeCcHHHHHHHHhCCCC-CCCccEEEEchhhhhhhc
Q psy18035 57 VATPGRFLHIVVEMELK-LSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 57 V~TP~~l~~l~~~~~~~-l~~l~~lVlDEaD~ll~~ 91 (104)
++.+.++...++.-.+. .+.==.+++||.|.+++.
T Consensus 107 ~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~ 142 (331)
T PF14516_consen 107 IGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY 142 (331)
T ss_pred cCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccC
Confidence 45556665555432111 122227899999999984
No 293
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=49.50 E-value=24 Score=22.65 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=22.6
Q ss_pred CCCCccEEEEchhhhhhhcCc--HHHHHhhhh
Q psy18035 73 KLSSIQYVVFDEADRLFEMGF--DVEQQSPCD 102 (104)
Q Consensus 73 ~l~~l~~lVlDEaD~ll~~gf--~~~i~~i~~ 102 (104)
.....+++|+||.-..++.|+ .+++..+++
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~ 123 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLK 123 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHH
Confidence 346789999999999988886 455555554
No 294
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.83 E-value=9.6 Score=30.24 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=16.4
Q ss_pred CCccEEEEchhhhhhhcCcHH
Q psy18035 75 SSIQYVVFDEADRLFEMGFDV 95 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~ 95 (104)
..-+.+||||+|+|-...|..
T Consensus 123 gr~KViIIDEah~Ls~~AaNA 143 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNA 143 (700)
T ss_pred CCceEEEEEChHhcCHHHHHH
Confidence 457899999999997665543
No 295
>PRK02362 ski2-like helicase; Provisional
Probab=48.82 E-value=87 Score=24.94 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=27.3
Q ss_pred ceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 31 LQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 31 ~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
..+...+||.+..+.... .++| .+++|+|+ .+. ..+++...+.+|
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~-----tla-~GvnlPa~~VVI 352 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTP-----TLA-AGLNLPARRVII 352 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEech-----hhh-hhcCCCceEEEE
Confidence 356777888876544332 2344 89999995 222 245566666555
No 296
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=48.65 E-value=27 Score=22.77 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=21.8
Q ss_pred CCCCCccEEEEchhhhhhhcCc--HHHHHhhhh
Q psy18035 72 LKLSSIQYVVFDEADRLFEMGF--DVEQQSPCD 102 (104)
Q Consensus 72 ~~l~~l~~lVlDEaD~ll~~gf--~~~i~~i~~ 102 (104)
+.-...+++|+||.-..++.|+ .+++..+++
T Consensus 92 i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~ 124 (172)
T PF02572_consen 92 ISSGEYDLVILDEINYAVDYGLLSEEEVLDLLE 124 (172)
T ss_dssp TT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHH
T ss_pred HhCCCCCEEEEcchHHHhHCCCccHHHHHHHHH
Confidence 3346788999999999999997 445555544
No 297
>KOG0925|consensus
Probab=48.48 E-value=13 Score=28.74 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=21.5
Q ss_pred EeCcHHHHHHHHhCC--------CCCCCccEEEEchhhh
Q psy18035 57 VATPGRFLHIVVEME--------LKLSSIQYVVFDEADR 87 (104)
Q Consensus 57 V~TP~~l~~l~~~~~--------~~l~~l~~lVlDEaD~ 87 (104)
.+||..++..+..+. -.+..-..+|+||||.
T Consensus 132 C~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 132 CTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHE 170 (699)
T ss_pred cCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhh
Confidence 456767666554332 2368889999999995
No 298
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=48.48 E-value=85 Score=21.49 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=12.4
Q ss_pred hCCCCCCCccEEEEchh
Q psy18035 69 EMELKLSSIQYVVFDEA 85 (104)
Q Consensus 69 ~~~~~l~~l~~lVlDEa 85 (104)
.+.++.+++.++-.||-
T Consensus 58 ~~~i~w~~v~~f~~DEr 74 (259)
T TIGR00502 58 AGKISFQNVTTFNMDEY 74 (259)
T ss_pred ccCCchhHeEEEeCeec
Confidence 34677788888888885
No 299
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=48.45 E-value=11 Score=28.24 Aligned_cols=33 Identities=33% Similarity=0.495 Sum_probs=20.4
Q ss_pred CcEEEeCcHH---------HH-HHHHhCCCCCCCccEEEEchh
Q psy18035 53 PDIVVATPGR---------FL-HIVVEMELKLSSIQYVVFDEA 85 (104)
Q Consensus 53 ~~IlV~TP~~---------l~-~l~~~~~~~l~~l~~lVlDEa 85 (104)
|.|+|||||. |+ .|+.-..-.++-+-|||=++|
T Consensus 126 p~vlIGTPGIGKS~~~GS~LLyqLLHy~~~~L~vVaYfv~~~a 168 (439)
T PF07999_consen 126 PFVLIGTPGIGKSFGTGSYLLYQLLHYDAEKLPVVAYFVGGEA 168 (439)
T ss_pred ceEEEecCCcCccccchhhhhhhhhcCChhhccEEEEEEeceE
Confidence 7899999996 22 444333334555666665554
No 300
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=48.19 E-value=43 Score=25.06 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=40.2
Q ss_pred CCeeEEEehh-------HHHHHHHHHHHHhccCCceEEEEEcCc---cHHHHHHHhcCCCcEEEeCcHH-------HHHH
Q psy18035 4 ANINYLISFP-------IVQQTFKFVKELGKFTKLQSTCLLGGD---SMDNQFARLHASPDIVVATPGR-------FLHI 66 (104)
Q Consensus 4 ~~~~~lil~P-------La~Qi~~~~~~l~~~~~~~~~~~~g~~---~~~~~~~~l~~~~~IlV~TP~~-------l~~l 66 (104)
.|-+++|+.| |+..+.+.+..- +....+.++..+. ...+-.+.+. ..++++|-+. +...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n--hfdv~v~VlLIgER~~EVtDLqrsIl--g~Vvast~d~p~~~~~~va~~ 242 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN--HPEVELIVLLIDERPEEVTDMQRSVK--GEVVASTFDEPASRHVQVAEM 242 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc--CCceEEEEEEcCCCCccHHHHHHHhh--ceEEEecCCCChHHHHHHHHH
Confidence 3556888888 777766654421 2344444443333 3333333332 3677776442 1111
Q ss_pred HHhC--CC-CCCCccEEEEchhhhh
Q psy18035 67 VVEM--EL-KLSSIQYVVFDEADRL 88 (104)
Q Consensus 67 ~~~~--~~-~l~~l~~lVlDEaD~l 88 (104)
.... .+ .-..=-.+++||++++
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChhHH
Confidence 1110 00 1122238899999988
No 301
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=48.15 E-value=16 Score=26.04 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=39.3
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC------------
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM------------ 70 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~------------ 70 (104)
.+++.+.. |-....+-++.++.. .+.+..+.. .+.. ....+ .-.|+.+|=..|..--+++
T Consensus 92 ~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~-~~~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 92 KRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYG-DIIRL--KEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CceEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccC-cCCCC--CCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 35677666 777777777777543 222222211 0000 00111 2246666655554332211
Q ss_pred --CCCCCCccEEEEchhhhhhhc
Q psy18035 71 --ELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 71 --~~~l~~l~~lVlDEaD~ll~~ 91 (104)
.-+++. .+|+||+|.+=+.
T Consensus 167 W~g~dfdg--vivfDEcH~akn~ 187 (303)
T PF13872_consen 167 WCGEDFDG--VIVFDECHKAKNL 187 (303)
T ss_pred HHhcCCCc--eEEeccchhcCCC
Confidence 012222 8999999998654
No 302
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=48.08 E-value=12 Score=21.88 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.0
Q ss_pred ccEEEEchhhhhhhcC
Q psy18035 77 IQYVVFDEADRLFEMG 92 (104)
Q Consensus 77 l~~lVlDEaD~ll~~g 92 (104)
-..+++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4799999999998775
No 303
>KOG4284|consensus
Probab=48.08 E-value=34 Score=27.58 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=34.3
Q ss_pred hccCCceEEEEEcCccHHHHHHH---hcC-CCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 26 GKFTKLQSTCLLGGDSMDNQFAR---LHA-SPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~~~~~---l~~-~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
.+..++.+.++.|.++-.+.... ++. .+.|+|+| ++.. +.++-.++.++|
T Consensus 292 L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT-----DLta-RGIDa~~vNLVV 345 (980)
T KOG4284|consen 292 LKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST-----DLTA-RGIDADNVNLVV 345 (980)
T ss_pred hhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec-----chhh-ccCCccccceEE
Confidence 34568899999999986655433 333 48999999 5543 455667777665
No 304
>KOG0330|consensus
Probab=47.97 E-value=60 Score=24.45 Aligned_cols=52 Identities=27% Similarity=0.289 Sum_probs=37.7
Q ss_pred HHhccCCceEEEEEcCccHHHHHHHhc---C-CCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 24 ELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 24 ~l~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
-+.+..++.+..+.|.++.......+. + .++|++||- +-++.++..+++.+|
T Consensus 318 ~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD------VaSRGLDip~Vd~VV 373 (476)
T KOG0330|consen 318 LLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD------VASRGLDIPHVDVVV 373 (476)
T ss_pred HHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecc------hhcccCCCCCceEEE
Confidence 344556788888999988776665554 3 489999993 456677778887776
No 305
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=47.96 E-value=76 Score=25.53 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=19.7
Q ss_pred CcHHHHHHHHhCCCCCCCccEEEEchhhhhhh
Q psy18035 59 TPGRFLHIVVEMELKLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 59 TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~ 90 (104)
.||++...+....- .-..+++||+|.+..
T Consensus 400 ~~g~i~~~l~~~~~---~~~villDEidk~~~ 428 (775)
T TIGR00763 400 MPGRIIQGLKKAKT---KNPLFLLDEIDKIGS 428 (775)
T ss_pred CCchHHHHHHHhCc---CCCEEEEechhhcCC
Confidence 58888766654221 113799999999974
No 306
>PRK06835 DNA replication protein DnaC; Validated
Probab=47.91 E-value=1e+02 Score=22.15 Aligned_cols=89 Identities=12% Similarity=0.161 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhccC--CceEEEEEcCccHHHHH-------HHhcCCCcEEEeCcHHHHHHHHhCC-----------CC
Q psy18035 14 IVQQTFKFVKELGKFT--KLQSTCLLGGDSMDNQF-------ARLHASPDIVVATPGRFLHIVVEME-----------LK 73 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~--~~~~~~~~g~~~~~~~~-------~~l~~~~~IlV~TP~~l~~l~~~~~-----------~~ 73 (104)
-..++.+.++.+.+.. .-....++|........ ..+..+..++..|...+...+.... -.
T Consensus 164 ~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~ 243 (329)
T PRK06835 164 NMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL 243 (329)
T ss_pred HHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH
Confidence 4445566566555421 22567778765433211 2234567888888888876653311 12
Q ss_pred CCCccEEEEchhhhhhhcCc-HHHHHhhhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGF-DVEQQSPCD 102 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf-~~~i~~i~~ 102 (104)
+.++++||||+........| ...+..|++
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin 273 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLIN 273 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 46889999999977654433 344555543
No 307
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.52 E-value=11 Score=28.70 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=14.7
Q ss_pred CCccEEEEchhhhhhhcCcH
Q psy18035 75 SSIQYVVFDEADRLFEMGFD 94 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~ 94 (104)
..-+.+||||||+|-...+.
T Consensus 120 g~~KV~IIDEah~Ls~~A~N 139 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFN 139 (484)
T ss_pred CCCEEEEEechhhcCHHHHH
Confidence 34679999999988654443
No 308
>PLN03025 replication factor C subunit; Provisional
Probab=47.42 E-value=10 Score=26.76 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.0
Q ss_pred CCccEEEEchhhhhhhc
Q psy18035 75 SSIQYVVFDEADRLFEM 91 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~ 91 (104)
...+.+++||+|.|-..
T Consensus 98 ~~~kviiiDE~d~lt~~ 114 (319)
T PLN03025 98 GRHKIVILDEADSMTSG 114 (319)
T ss_pred CCeEEEEEechhhcCHH
Confidence 45789999999998654
No 309
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=47.20 E-value=28 Score=22.90 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=22.0
Q ss_pred CCCccEEEEchhhhhhhcCc--HHHHHhhhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGF--DVEQQSPCD 102 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf--~~~i~~i~~ 102 (104)
-...+++|+||.-..++.|+ ++++..+++
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~ 143 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLE 143 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHH
Confidence 36789999999999999997 445555443
No 310
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=47.15 E-value=79 Score=20.64 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHH-HHHHhCCCC
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFL-HIVVEMELK 73 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~-~l~~~~~~~ 73 (104)
+..-+.+..+.+.+.+++++.+..+++.. ....+.. .+|++++...... .+...+...
T Consensus 9 ~~~~~~~l~~~f~~~~g~~v~v~~~~s~~--~~~~l~~g~~~Dv~~~~~~~~~~~l~~~g~~~ 69 (230)
T PF13531_consen 9 LAPALEELAEAFEKQPGIKVEVSFGGSGE--LVRRLQAGKKPDVFIPASSEWLERLAAAGLVD 69 (230)
T ss_dssp GHHHHHHHHHHHHHHHCEEEEEEEECHHH--HHHHHHTT-S-SEEEESSHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHhccCCeEEEEECChHH--HHHHHhcCCCceEEEECCHHHHHHHHhccccc
Confidence 55555566666666788998888876643 3333343 4999999875554 444444443
No 311
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=46.74 E-value=15 Score=26.00 Aligned_cols=13 Identities=38% Similarity=0.485 Sum_probs=11.1
Q ss_pred ccEEEEchhhhhh
Q psy18035 77 IQYVVFDEADRLF 89 (104)
Q Consensus 77 l~~lVlDEaD~ll 89 (104)
-..+||||+|.+.
T Consensus 130 ~~vlvIDE~d~L~ 142 (365)
T TIGR02928 130 SLIIVLDEIDYLV 142 (365)
T ss_pred eEEEEECchhhhc
Confidence 4578999999997
No 312
>KOG0343|consensus
Probab=46.45 E-value=1.3e+02 Score=23.89 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=43.6
Q ss_pred eeEEEehhHHHH---HHHHHHHHhccCCceEEEEEcCccHHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 6 INYLISFPIVQQ---TFKFVKELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 6 ~~~lil~PLa~Q---i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
.+.||...-|.| +++.|+++- ++++...++|+++....+... +...-+++|| + +-.+.++|..+.
T Consensus 314 ~K~iVF~SscKqvkf~~e~F~rlr--pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~T-----D-v~aRGLDFpaVd 385 (758)
T KOG0343|consen 314 KKSIVFLSSCKQVKFLYEAFCRLR--PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCT-----D-VAARGLDFPAVD 385 (758)
T ss_pred cceEEEEehhhHHHHHHHHHHhcC--CCCceeeeccchhHHHHHHHHHHHHHhcceEEEee-----h-hhhccCCCcccc
Confidence 345565553444 455555553 578888999998866554443 3456788998 3 344567778888
Q ss_pred EEE
Q psy18035 79 YVV 81 (104)
Q Consensus 79 ~lV 81 (104)
++|
T Consensus 386 wVi 388 (758)
T KOG0343|consen 386 WVI 388 (758)
T ss_pred eEE
Confidence 876
No 313
>PRK04296 thymidine kinase; Provisional
Probab=46.44 E-value=23 Score=22.98 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=19.3
Q ss_pred EeCcHHHHHHHHhCCCCCCCccEEEEchhhhh
Q psy18035 57 VATPGRFLHIVVEMELKLSSIQYVVFDEADRL 88 (104)
Q Consensus 57 V~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~l 88 (104)
+..+..+.+.+.. .-.+.+.+|+|||+.+
T Consensus 62 ~~~~~~~~~~~~~---~~~~~dvviIDEaq~l 90 (190)
T PRK04296 62 VSSDTDIFELIEE---EGEKIDCVLIDEAQFL 90 (190)
T ss_pred eCChHHHHHHHHh---hCCCCCEEEEEccccC
Confidence 4555666666554 2356789999999643
No 314
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=46.35 E-value=26 Score=24.14 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=14.4
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
...+.+++||||.|-.
T Consensus 108 ~~~kviiidead~mt~ 123 (325)
T COG0470 108 GGYKVVIIDEADKLTE 123 (325)
T ss_pred CCceEEEeCcHHHHhH
Confidence 6789999999999975
No 315
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=45.51 E-value=85 Score=24.90 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=13.3
Q ss_pred hCCCCCCCccEEEEchh
Q psy18035 69 EMELKLSSIQYVVFDEA 85 (104)
Q Consensus 69 ~~~~~l~~l~~lVlDEa 85 (104)
...++++++.++-+||-
T Consensus 84 ~~~l~w~~V~~F~~DEr 100 (652)
T PRK02122 84 EEGLSFKNVITFNLDEY 100 (652)
T ss_pred ccCCCchheEEEeCeec
Confidence 44678888888888884
No 316
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=45.29 E-value=54 Score=23.53 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=36.8
Q ss_pred EEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC-CCcEEEeCcHHHHHHHHhCCCCCCCccEEEEch
Q psy18035 8 YLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYVVFDE 84 (104)
Q Consensus 8 ~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDE 84 (104)
.+++.| -+.++..+--.+++..+ +.+++|......-...+.+ +++++|.- |-+++..+ -++++.+++|-
T Consensus 83 ~~~v~~~~~~~~~GDEp~lla~~~~--~~V~V~~dR~~~~~~~~~~~~~dviilD-----DGfQh~~L-~rDl~Ivl~D~ 154 (326)
T PF02606_consen 83 PILVSDGSDAEEVGDEPLLLARKLP--VPVIVGPDRVAAARAALKEFPADVIILD-----DGFQHRRL-KRDLDIVLVDA 154 (326)
T ss_pred eEEEeCCCChhhhcCHHHHHHHhcC--CcEEEeCcHHHHHHHHHHHCCCCEEEEc-----CCcccccc-cCCcEEEEEeC
Confidence 344444 56666666666666555 4444444433333333332 36777765 33443333 27788888885
No 317
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=45.23 E-value=18 Score=24.82 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=19.1
Q ss_pred CcHHHHHHHHh---CCCCCCCccEEEEch
Q psy18035 59 TPGRFLHIVVE---MELKLSSIQYVVFDE 84 (104)
Q Consensus 59 TP~~l~~l~~~---~~~~l~~l~~lVlDE 84 (104)
||-.+.+.+-+ +.++.+++.++-+||
T Consensus 43 TP~~~ye~L~~~~~~~~~w~~v~~f~~DE 71 (238)
T COG0363 43 TPLALYEALVKLPQGQLDWSKVTIFNLDE 71 (238)
T ss_pred CHHHHHHHHHhhhccCCCchheEEEeccc
Confidence 56666644433 359999999999999
No 318
>PRK13695 putative NTPase; Provisional
Probab=45.08 E-value=17 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=18.9
Q ss_pred CCCccEEEEchh--hhhhhcCcHHHHHhhhh
Q psy18035 74 LSSIQYVVFDEA--DRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 74 l~~l~~lVlDEa--D~ll~~gf~~~i~~i~~ 102 (104)
+++.+.+++||+ ..-++.++.+.+..+++
T Consensus 94 l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~ 124 (174)
T PRK13695 94 LEEADVIIIDEIGKMELKSPKFVKAVEEVLD 124 (174)
T ss_pred cCCCCEEEEECCCcchhhhHHHHHHHHHHHh
Confidence 467788999994 34455556666666553
No 319
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=44.82 E-value=14 Score=30.00 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=16.2
Q ss_pred CCccEEEEchhhhhhhcCcH
Q psy18035 75 SSIQYVVFDEADRLFEMGFD 94 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~ 94 (104)
..-|.+||||+|+|-..++.
T Consensus 119 ~~~KV~IIDEad~lt~~a~N 138 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFN 138 (824)
T ss_pred CCceEEEEechhhcCHHHHH
Confidence 56789999999999766544
No 320
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=44.54 E-value=15 Score=29.22 Aligned_cols=27 Identities=15% Similarity=0.039 Sum_probs=18.2
Q ss_pred CCccEEEEchhhhhhh--c-CcHHHHHhhh
Q psy18035 75 SSIQYVVFDEADRLFE--M-GFDVEQQSPC 101 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~--~-gf~~~i~~i~ 101 (104)
+.-+.+++|||+.+++ . .+.+.+..+.
T Consensus 636 ~~~~~~viDEaw~ll~~~~~~~~~~i~~~~ 665 (797)
T TIGR02746 636 KRRKICIIDEAWSLLDGANPQAADFIETGY 665 (797)
T ss_pred CCceEEEEecHHHHhhcccHHHHHHHHHHH
Confidence 3467899999999997 3 2344444443
No 321
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=44.54 E-value=14 Score=29.23 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=19.4
Q ss_pred CccEEEEchhhhhhhc-CcHHHHHhhhh
Q psy18035 76 SIQYVVFDEADRLFEM-GFDVEQQSPCD 102 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~-gf~~~i~~i~~ 102 (104)
.-.++++|||+.+++. .+.+.+..+++
T Consensus 629 ~~~~i~iDEa~~ll~~~~~~~~i~~~~r 656 (785)
T TIGR00929 629 RPFLIIIDEAWQYLGNPVFAAKIRDWLK 656 (785)
T ss_pred CCeEEEEechhhhcCCHHHHHHHHHHHH
Confidence 4468899999999974 45666665554
No 322
>PF06601 Orthopox_F6: Orthopoxvirus F6 protein; InterPro: IPR009521 This family consists of several Orthopoxvirus F6L proteins the function of which is unknown.
Probab=44.40 E-value=13 Score=20.16 Aligned_cols=30 Identities=13% Similarity=0.408 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCCCCCccEEEEchhhhhhhcCc
Q psy18035 62 RFLHIVVEMELKLSSIQYVVFDEADRLFEMGF 93 (104)
Q Consensus 62 ~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~gf 93 (104)
++.+++.+..+. .-+..-+||.|.|++..|
T Consensus 11 KI~Dli~Nd~iK--YS~V~~ieE~~~Ll~~d~ 40 (72)
T PF06601_consen 11 KIIDLITNDQIK--YSRVISIEESDSLLDVDE 40 (72)
T ss_pred HHHHHhccCccc--eeeeeehhhhhccCchhh
Confidence 445666555543 344566899999987643
No 323
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=44.38 E-value=19 Score=26.23 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=17.9
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
...-.+|+||.|.|.+..- +-+..|+
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~ 147 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLL 147 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHH
Confidence 3455789999999998753 4444443
No 324
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=44.35 E-value=13 Score=23.89 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.6
Q ss_pred CCCccEEEEchhhhhhhc
Q psy18035 74 LSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~ 91 (104)
...-+.+|+||+|.|-..
T Consensus 94 ~~~~kviiide~~~l~~~ 111 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA 111 (188)
T ss_pred cCCeEEEEEechhhhCHH
Confidence 467789999999999653
No 325
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=44.31 E-value=90 Score=24.55 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=32.8
Q ss_pred EEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHH----HHHHhcCCCcEEEeCc
Q psy18035 8 YLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDN----QFARLHASPDIVVATP 60 (104)
Q Consensus 8 ~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~----~~~~l~~~~~IlV~TP 60 (104)
+||-|. -+.++.+.+.+- ++++...++|.+..+ |..++.....|+|+|-
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~----g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~ 288 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKN----GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATN 288 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Confidence 455555 556555544432 789999999987543 4445566689999984
No 326
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.24 E-value=13 Score=28.33 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.4
Q ss_pred CCccEEEEchhhhhhhcCcH
Q psy18035 75 SSIQYVVFDEADRLFEMGFD 94 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~ 94 (104)
..-+.++|||+|+|-...|.
T Consensus 118 ~~~kV~iIDE~~~ls~~a~n 137 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFN 137 (509)
T ss_pred CCcEEEEEEChHhcCHHHHH
Confidence 35689999999988765554
No 327
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=44.21 E-value=25 Score=24.12 Aligned_cols=23 Identities=22% Similarity=0.070 Sum_probs=14.4
Q ss_pred cEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 78 QYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 78 ~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
..+++||.|++ +......+..++
T Consensus 107 ~~lllDEi~r~-~~~~q~~Ll~~L 129 (262)
T TIGR02640 107 FTLVYDEFTRS-KPETNNVLLSVF 129 (262)
T ss_pred CEEEEcchhhC-CHHHHHHHHHHh
Confidence 48999999985 333444444444
No 328
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=43.87 E-value=13 Score=29.27 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=16.0
Q ss_pred CCccEEEEchhhhhhhcCcHH
Q psy18035 75 SSIQYVVFDEADRLFEMGFDV 95 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~ 95 (104)
..-+.+||||+|+|-...+..
T Consensus 118 g~~KV~IIDEah~Ls~~a~NA 138 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNA 138 (647)
T ss_pred CCCEEEEEechHhCCHHHHHH
Confidence 467899999999887655443
No 329
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=43.58 E-value=31 Score=25.86 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=20.3
Q ss_pred CCCCeeEEEehh---HHHHHHHHHHHHhcc
Q psy18035 2 GFANINYLISFP---IVQQTFKFVKELGKF 28 (104)
Q Consensus 2 ~~~~~~~lil~P---La~Qi~~~~~~l~~~ 28 (104)
|..+++.++.++ -|..+++.++.+.+.
T Consensus 51 g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 51 GEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 345678888888 888888888877665
No 330
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=43.57 E-value=24 Score=24.02 Aligned_cols=13 Identities=31% Similarity=0.273 Sum_probs=11.1
Q ss_pred cEEEEchhhhhhh
Q psy18035 78 QYVVFDEADRLFE 90 (104)
Q Consensus 78 ~~lVlDEaD~ll~ 90 (104)
..+++||+|.|..
T Consensus 107 ~VL~IDE~~~L~~ 119 (261)
T TIGR02881 107 GVLFIDEAYSLAR 119 (261)
T ss_pred CEEEEechhhhcc
Confidence 4899999999874
No 331
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=43.49 E-value=23 Score=21.34 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=14.7
Q ss_pred CCCccEEEEchhhhhhhc
Q psy18035 74 LSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~ 91 (104)
-...+++|+||.+.+++.
T Consensus 83 ~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 83 RGGDDLIILDELTRLVRA 100 (165)
T ss_pred CCCCEEEEEEcHHHHHHH
Confidence 357789999999988755
No 332
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=42.68 E-value=2e+02 Score=25.39 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=14.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHH
Q psy18035 5 NINYLISFP---IVQQTFKFVKEL 25 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l 25 (104)
+.++||.++ .|..+...+++.
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~ 267 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNEL 267 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHh
Confidence 457899999 666666666554
No 333
>PLN02360 probable 6-phosphogluconolactonase
Probab=42.67 E-value=1.1e+02 Score=21.11 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=10.6
Q ss_pred CCCCCCccEEEEch
Q psy18035 71 ELKLSSIQYVVFDE 84 (104)
Q Consensus 71 ~~~l~~l~~lVlDE 84 (104)
.++.+++.++-+||
T Consensus 68 ~idW~~v~~f~~DE 81 (268)
T PLN02360 68 TVDWAKWYIFWADE 81 (268)
T ss_pred CCCCceEEEEeeec
Confidence 56777788888887
No 334
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=42.63 E-value=7 Score=18.32 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=12.9
Q ss_pred EEchhhhhhhcCcHHHHHh
Q psy18035 81 VFDEADRLFEMGFDVEQQS 99 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~ 99 (104)
++||.|.+|+.+-++-+++
T Consensus 8 lLDeId~vLe~NAe~FV~~ 26 (33)
T TIGR03687 8 LLDEIDGVLESNAEEFVRG 26 (33)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 4688888887765555443
No 335
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.16 E-value=14 Score=29.02 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=16.5
Q ss_pred CCccEEEEchhhhhhhcCcHH
Q psy18035 75 SSIQYVVFDEADRLFEMGFDV 95 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~ 95 (104)
..-+.++|||+|+|-...|..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~Na 143 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNA 143 (618)
T ss_pred CCceEEEEEChhhCCHHHHHH
Confidence 457899999999987666554
No 336
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=41.41 E-value=18 Score=29.25 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=17.3
Q ss_pred ccEEEEchhhhhhhcC---cHHHHHhhh
Q psy18035 77 IQYVVFDEADRLFEMG---FDVEQQSPC 101 (104)
Q Consensus 77 l~~lVlDEaD~ll~~g---f~~~i~~i~ 101 (104)
-+++++|||+.+++.+ +.+.++...
T Consensus 660 ~~~~viDEaw~lL~~~~~~~~~fi~~~~ 687 (844)
T PRK13721 660 KKLNVIDEGWRLLDFKNHKVGEFIEKGY 687 (844)
T ss_pred eEEEEEhhHHHHhccCChHHHHHHHHHH
Confidence 4589999999999632 445555444
No 337
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=41.34 E-value=1e+02 Score=20.26 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcc-CCceEEEEEcCccHHH--HHHHh-----cCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhh
Q psy18035 17 QTFKFVKELGKF-TKLQSTCLLGGDSMDN--QFARL-----HASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRL 88 (104)
Q Consensus 17 Qi~~~~~~l~~~-~~~~~~~~~g~~~~~~--~~~~l-----~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~l 88 (104)
+....++.+... ..-....++|.....+ -...+ ..+..+++.+...+..... ...+.+.+++||+|.+
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~liiDdi~~l 102 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFD----FDPEAELYAVDDVERL 102 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHh----hcccCCEEEEeChhhc
Confidence 334445554332 2235667777543322 22222 3455666666665543321 1345678999999986
No 338
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=41.30 E-value=56 Score=18.78 Aligned_cols=32 Identities=31% Similarity=0.501 Sum_probs=19.3
Q ss_pred CcEEEeCcHHHHHHHHhCCCCCCCccEEEEchh
Q psy18035 53 PDIVVATPGRFLHIVVEMELKLSSIQYVVFDEA 85 (104)
Q Consensus 53 ~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEa 85 (104)
|||+..-|+..-. +....+..++++.-++||.
T Consensus 28 PDivL~G~ef~e~-~~~~~l~~~~lkvy~i~EL 59 (85)
T PF08967_consen 28 PDIVLVGPEFYEF-LSEEVLEVSGLKVYVIEEL 59 (85)
T ss_dssp --EEEE-HHHHHH-HHH---EETTEEEEE-GGG
T ss_pred CCEEEEcHHHHHH-HHHHHHHhhCceEEEHHhc
Confidence 9999999976544 4445667899999999994
No 339
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.27 E-value=15 Score=26.48 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=14.8
Q ss_pred CCccEEEEchhhhhhhcCc
Q psy18035 75 SSIQYVVFDEADRLFEMGF 93 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf 93 (104)
..-+.+|+||+|.|-...+
T Consensus 118 ~~~kviIIDEa~~l~~~a~ 136 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF 136 (363)
T ss_pred CCceEEEEEChhhcCHHHH
Confidence 4568999999999865443
No 340
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=41.22 E-value=1.1e+02 Score=23.44 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=20.9
Q ss_pred HHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH
Q psy18035 22 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 64 (104)
Q Consensus 22 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~ 64 (104)
++.+++..++.................+...-.++|-|+|+..
T Consensus 305 Lr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 305 LRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred HHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcCh
Confidence 3333443444333332233333334444444578899999554
No 341
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=41.01 E-value=85 Score=25.81 Aligned_cols=68 Identities=19% Similarity=0.117 Sum_probs=42.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHH--------HHhcC------------CCcEEEeCcH
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQF--------ARLHA------------SPDIVVATPG 61 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~--------~~l~~------------~~~IlV~TP~ 61 (104)
+-++||+++ -|..+++.+++. ++ ..++|+++..+.. +..++ +..|+|+|
T Consensus 272 g~~vLVF~NTv~~Aq~L~~~L~~~----g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVAT-- 343 (844)
T TIGR02621 272 GGAILVFCRTVKHVRKVFAKLPKE----KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCT-- 343 (844)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEecc--
Confidence 457899999 777777766643 23 7788888765433 11222 25799999
Q ss_pred HHHHHHHhCCCCCCCccEEEEchh
Q psy18035 62 RFLHIVVEMELKLSSIQYVVFDEA 85 (104)
Q Consensus 62 ~l~~l~~~~~~~l~~l~~lVlDEa 85 (104)
+.+.. .++++. .++|.|.+
T Consensus 344 ---dVaer-GLDId~-d~VI~d~a 362 (844)
T TIGR02621 344 ---SAGEV-GVNISA-DHLVCDLA 362 (844)
T ss_pred ---chhhh-cccCCc-ceEEECCC
Confidence 55443 344554 66776543
No 342
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=40.28 E-value=15 Score=28.16 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=18.9
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQS 99 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~ 99 (104)
.+-|.++|||+|+|-...|..-++.
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKT 142 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKT 142 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcc
Confidence 5678999999998877777654443
No 343
>PRK06620 hypothetical protein; Validated
Probab=39.28 E-value=1.1e+02 Score=20.25 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=35.0
Q ss_pred EEehhHHHHHHHHHHHHhccCC----ceEEEEEcCcc--HHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEE
Q psy18035 9 LISFPIVQQTFKFVKELGKFTK----LQSTCLLGGDS--MDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVF 82 (104)
Q Consensus 9 lil~PLa~Qi~~~~~~l~~~~~----~~~~~~~g~~~--~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVl 82 (104)
.|+.|-..+.+..++++.+..+ -+...++|... ...-.+...+.++..+.+.....+ . .+.....+++
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~----~--~~~~~d~lli 91 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE----E--ILEKYNAFII 91 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch----h--HHhcCCEEEE
Confidence 4555522233444444443212 24577787554 333333333444433333222211 0 1245578999
Q ss_pred chhhhh
Q psy18035 83 DEADRL 88 (104)
Q Consensus 83 DEaD~l 88 (104)
||+|.+
T Consensus 92 Ddi~~~ 97 (214)
T PRK06620 92 EDIENW 97 (214)
T ss_pred eccccc
Confidence 999955
No 344
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=39.13 E-value=15 Score=26.53 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=16.6
Q ss_pred CCCccEEEEchhhhhhhcCcHHHHHhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGFDVEQQSP 100 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~~~i~~i 100 (104)
+++++++|+||+-++-. .....+...
T Consensus 100 l~~~~~lIiDEism~~~-~~l~~i~~~ 125 (364)
T PF05970_consen 100 LRKADVLIIDEISMVSA-DMLDAIDRR 125 (364)
T ss_pred hhhheeeecccccchhH-HHHHHHHHh
Confidence 56789999999985543 333344333
No 345
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=38.92 E-value=51 Score=22.73 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=23.4
Q ss_pred ehh-HHHHHHHHHHHHhccCCceEEEEEcCc
Q psy18035 11 SFP-IVQQTFKFVKELGKFTKLQSTCLLGGD 40 (104)
Q Consensus 11 l~P-La~Qi~~~~~~l~~~~~~~~~~~~g~~ 40 (104)
|+| ++.+|++.++++.+..++++.++--..
T Consensus 167 LaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~ 197 (237)
T COG0410 167 LAPKIVEEIFEAIKELRKEGGMTILLVEQNA 197 (237)
T ss_pred cCHHHHHHHHHHHHHHHHcCCcEEEEEeccH
Confidence 478 999999999999987777766654333
No 346
>KOG0335|consensus
Probab=38.61 E-value=1.3e+02 Score=23.08 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEEEc
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSIQYVVFD 83 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlD 83 (104)
-|.|+...+. ..++++..+.|.....++.+.| +++ .+++|+|. +....++.++++++|.=
T Consensus 349 ~~d~l~~~l~----~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~------VaaRGlDi~~V~hVIny 412 (482)
T KOG0335|consen 349 GADELAAFLS----SNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN------VAARGLDIPNVKHVINY 412 (482)
T ss_pred hhhHHHHHHh----cCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh------hhhcCCCCCCCceeEEe
Confidence 5555544333 4456666777766544444443 344 89999994 45577889999998863
No 347
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=37.73 E-value=24 Score=29.62 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=24.2
Q ss_pred CcEEEeCcHHHHHHHH---hCCCCCC----CccEEEEchhhhh
Q psy18035 53 PDIVVATPGRFLHIVV---EMELKLS----SIQYVVFDEADRL 88 (104)
Q Consensus 53 ~~IlV~TP~~l~~l~~---~~~~~l~----~l~~lVlDEaD~l 88 (104)
..++|||+..++.... .+...+. .=+.+|+||+|-.
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY 605 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY 605 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC
Confidence 5899999999996652 2222211 1347899999954
No 348
>KOG0340|consensus
Probab=37.48 E-value=1.4e+02 Score=22.27 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=36.5
Q ss_pred hccCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 26 GKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
.+.+.+++..+++-++.++....|. +...|+|+|- +-+..++.-.++++|
T Consensus 274 l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD------VAsRGLDIP~V~LVv 327 (442)
T KOG0340|consen 274 LKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATD------VASRGLDIPTVELVV 327 (442)
T ss_pred HhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEec------hhhcCCCCCceeEEE
Confidence 4456789999999888888777765 3489999994 345566667776665
No 349
>KOG0923|consensus
Probab=37.10 E-value=35 Score=27.51 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=24.3
Q ss_pred cEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhh
Q psy18035 54 DIVVATPGRFLHIVVEMELKLSSIQYVVFDEADR 87 (104)
Q Consensus 54 ~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ 87 (104)
-|=..|-|.|+.=+.. ..++..-..+++||||.
T Consensus 357 vlKYMTDGmLlREfL~-epdLasYSViiiDEAHE 389 (902)
T KOG0923|consen 357 VLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHE 389 (902)
T ss_pred eeeeecchhHHHHHhc-cccccceeEEEeehhhh
Confidence 3557899998844332 34578889999999995
No 350
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=36.66 E-value=54 Score=27.56 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=17.1
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
.....+||||+|.|...+ .+.+..++
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLF 893 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLF 893 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHH
Confidence 345689999999998642 33344443
No 351
>PRK01172 ski2-like helicase; Provisional
Probab=36.63 E-value=2.1e+02 Score=22.50 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=19.4
Q ss_pred eEEEEEcCccHHHHHHHh---cCC-CcEEEeCc
Q psy18035 32 QSTCLLGGDSMDNQFARL---HAS-PDIVVATP 60 (104)
Q Consensus 32 ~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP 60 (104)
.+...+||.+..++.... ++| ..|+|+|+
T Consensus 287 gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~ 319 (674)
T PRK01172 287 GVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATP 319 (674)
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 466778888866544332 344 89999994
No 352
>PRK06526 transposase; Provisional
Probab=36.41 E-value=25 Score=24.17 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=26.0
Q ss_pred cCCCcEEEeCcHHHHHHHHhC----C-----CCCCCccEEEEchhhhhh
Q psy18035 50 HASPDIVVATPGRFLHIVVEM----E-----LKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 50 ~~~~~IlV~TP~~l~~l~~~~----~-----~~l~~l~~lVlDEaD~ll 89 (104)
..+..++..|...+.+.+... . -.+.+..++|+||++..-
T Consensus 124 ~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 124 QAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred HCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 345677777777766555321 1 125677899999999763
No 353
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=36.38 E-value=1.2e+02 Score=19.47 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=30.6
Q ss_pred HHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHH
Q psy18035 21 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLH 65 (104)
Q Consensus 21 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~ 65 (104)
.+.++++..++++.++.||+......+..+...=|-||-.--|.+
T Consensus 77 ~l~~lae~~g~~v~i~~Ggt~ar~~ik~~~p~~iigVAC~~dL~~ 121 (158)
T PF01976_consen 77 DLKKLAEKYGYKVYIATGGTLARKIIKEYRPKAIIGVACERDLIS 121 (158)
T ss_pred HHHHHHHHcCCEEEEEcChHHHHHHHHHhCCCEEEEEechHHHHH
Confidence 455667778899999999998888777766544444444444443
No 354
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=36.35 E-value=1.3e+02 Score=24.22 Aligned_cols=16 Identities=38% Similarity=0.341 Sum_probs=12.8
Q ss_pred CCCccEEEEchhhhhh
Q psy18035 74 LSSIQYVVFDEADRLF 89 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll 89 (104)
+...+.+|+|||-++=
T Consensus 437 ~~~~~llIvDEasMv~ 452 (744)
T TIGR02768 437 LSDKDVLVIDEAGMVG 452 (744)
T ss_pred CCCCcEEEEECcccCC
Confidence 5677899999998653
No 355
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=35.87 E-value=1.1e+02 Score=21.05 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=23.7
Q ss_pred CCeeEEEehh-------HHHHHHHHHHHHhccCCceEEEE-EcC--ccHHHHHHHh
Q psy18035 4 ANINYLISFP-------IVQQTFKFVKELGKFTKLQSTCL-LGG--DSMDNQFARL 49 (104)
Q Consensus 4 ~~~~~lil~P-------La~Qi~~~~~~l~~~~~~~~~~~-~g~--~~~~~~~~~l 49 (104)
+|-+.+|+.| |+..+++....- ..+..+.+. ++. ....+-.+.+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~--~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN--HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc--cCCeEEEEEEccCCCccHHHHHHHh
Confidence 4567888888 777777655432 234444433 444 3344444444
No 356
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=35.74 E-value=87 Score=17.82 Aligned_cols=34 Identities=6% Similarity=0.080 Sum_probs=22.3
Q ss_pred EEEehh--HHHHHHHHHHHHhccCCceEEEEEcCcc
Q psy18035 8 YLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDS 41 (104)
Q Consensus 8 ~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~ 41 (104)
.+|-+| +|.+..+..-.+.+..++.+.-++-+++
T Consensus 29 ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs 64 (81)
T PF10609_consen 29 IVVTTPQELALADVRRAIDMFRKLNVPILGVVENMS 64 (81)
T ss_dssp EEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-
T ss_pred EEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 345566 9999888888888888988887776553
No 357
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=35.59 E-value=83 Score=17.56 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=24.5
Q ss_pred eEEEehh--------HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCc
Q psy18035 7 NYLISFP--------IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATP 60 (104)
Q Consensus 7 ~~lil~P--------La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP 60 (104)
+++++|+ ++.++.+.+++.. +...+...+.+.. . ...|++++|-
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~----~~~~v~~~~~~~~---~---~~~Dliitt~ 53 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAG----LEIPVTNSAIDEL---P---SDADLVVTHA 53 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCC----CceEEEEcchhhC---C---CCCCEEEECh
Confidence 4788888 4666666666433 3222222222111 1 4579999995
No 358
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=35.38 E-value=1.2e+02 Score=19.50 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=32.3
Q ss_pred HHHHHHHHHhccCCceEEEEEcCccHHH-HHHHhcCCCcEEEeCcHH-HHHHHHhCC
Q psy18035 17 QTFKFVKELGKFTKLQSTCLLGGDSMDN-QFARLHASPDIVVATPGR-FLHIVVEME 71 (104)
Q Consensus 17 Qi~~~~~~l~~~~~~~~~~~~g~~~~~~-~~~~l~~~~~IlV~TP~~-l~~l~~~~~ 71 (104)
-+...++.|.+.+++++...+||+..-. +... ...+||+++-... +..+...+.
T Consensus 7 ~~~~~~~~f~~~~gi~V~~~~~gs~~l~~~l~~-~~~aDv~~~~~~~~~~~l~~~g~ 62 (216)
T TIGR01256 7 ALKEIAKQFEKRTGNKVVFSFGSSGTLYTQIEN-GAPADLFISADNKWPKKLVDKGL 62 (216)
T ss_pred HHHHHHHHHHHhhCCeEEEEeCChHHHHHHHHc-CCCCcEEEECCHHHHHHHHHCCC
Confidence 3445566666667888888888776432 2221 2238999985544 445555443
No 359
>KOG3347|consensus
Probab=35.15 E-value=23 Score=23.03 Aligned_cols=13 Identities=46% Similarity=0.935 Sum_probs=9.6
Q ss_pred cCCCcEEEe-CcHH
Q psy18035 50 HASPDIVVA-TPGR 62 (104)
Q Consensus 50 ~~~~~IlV~-TP~~ 62 (104)
+..|+|+|+ |||.
T Consensus 5 r~~PNILvtGTPG~ 18 (176)
T KOG3347|consen 5 RERPNILVTGTPGT 18 (176)
T ss_pred hcCCCEEEeCCCCC
Confidence 346888876 9985
No 360
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=34.84 E-value=79 Score=22.74 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=50.9
Q ss_pred CceEEEEEcCc--cHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEEEch--hhhhhhcCcHHHHHhhhh
Q psy18035 30 KLQSTCLLGGD--SMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVVFDE--ADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 30 ~~~~~~~~g~~--~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDE--aD~ll~~gf~~~i~~i~~ 102 (104)
.+++.++-+|. +..+..+.++.| .++.+..++.+..+.. .+..-++-|++=|+ ++++++..+.+++..-++
T Consensus 60 ~l~i~vfP~~qLG~~~~~ie~l~~G~id~~~~s~~~l~~~~P--~~~v~~lPflf~d~~~~~~~~~~~~g~~l~~~~e 135 (332)
T COG1638 60 RLKIEVFPNSQLGGEAEMIEQLRSGTLDIGVVSLGFLAGLVP--EFGVFDLPFLFRDEEHARRVLDSEFGEELLKSLE 135 (332)
T ss_pred eEEEEECCCcccCcHHHHHHHHhcCCeeEEeccchhhcccCC--cceeecCCeeeCCHHHHHHHHccHHHHHHHHHHH
Confidence 36777776654 456677788888 8999999988887665 33456777777665 777888778877766544
No 361
>KOG0933|consensus
Probab=34.47 E-value=25 Score=29.29 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=43.1
Q ss_pred ceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 31 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 31 ~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
+-+.+..||. +++....|..|-.=+|+-.- ++.++ .|+.-.+.|+||.|-=||.++-..|-.++++
T Consensus 1066 LEvkV~~G~i-WKeSL~ELSGGQRSLVALsL-IlamL-----~fkPAPlYILDEVDAALDLSHTQNIG~mIkt 1131 (1174)
T KOG0933|consen 1066 LEVKVKFGGI-WKESLSELSGGQRSLVALSL-ILAML-----KFKPAPLYILDEVDAALDLSHTQNIGRMIKT 1131 (1174)
T ss_pred eEEEEEeCcc-HHHHHHHhcCchHHHHHHHH-HHHHH-----cCCCCceeehhhhHHhhcchhhhhHHHHHHh
Confidence 4555556554 44455666655444443311 11333 3677789999999999999999999888764
No 362
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.56 E-value=24 Score=29.16 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=14.6
Q ss_pred CCccEEEEchhhhhhhcCc
Q psy18035 75 SSIQYVVFDEADRLFEMGF 93 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf 93 (104)
..-+.+||||||+|-...+
T Consensus 118 gk~KViIIDEAh~LT~eAq 136 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF 136 (944)
T ss_pred CCcEEEEEechHhcCHHHH
Confidence 4568999999999964443
No 363
>PTZ00209 retrotransposon hot spot protein; Provisional
Probab=33.48 E-value=21 Score=28.30 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=9.6
Q ss_pred CCcEEEeCcHH
Q psy18035 52 SPDIVVATPGR 62 (104)
Q Consensus 52 ~~~IlV~TP~~ 62 (104)
.++++|||||-
T Consensus 173 ~~~vLIGTPGI 183 (693)
T PTZ00209 173 PTHIVIGISGI 183 (693)
T ss_pred CceEEECCCCc
Confidence 47999999996
No 364
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=33.34 E-value=99 Score=17.75 Aligned_cols=48 Identities=2% Similarity=0.117 Sum_probs=26.1
Q ss_pred eeEEEehh--------HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCc
Q psy18035 6 INYLISFP--------IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATP 60 (104)
Q Consensus 6 ~~~lil~P--------La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP 60 (104)
.+++++|. ++..+.+.+++ .++.+.... .+..+ ......++|+++.||
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~----~gi~~~v~~--~~~~e-~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQS----HNIPVELIQ--CRVNE-IETYMDGVHLICTTA 58 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHH----CCCeEEEEE--ecHHH-HhhhcCCCCEEEECC
Confidence 36788888 34444444443 445443333 22222 222235689999998
No 365
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=33.34 E-value=45 Score=26.23 Aligned_cols=35 Identities=31% Similarity=0.301 Sum_probs=23.1
Q ss_pred cCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhc
Q psy18035 50 HASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 50 ~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~ 91 (104)
-...+++.+|.+. . .+.-...+++|+|||-+..+.
T Consensus 342 l~~a~v~~st~~~--~-----~l~~~~Fd~vIIDEAsQ~~ep 376 (637)
T TIGR00376 342 LAESDVVQSTNSS--A-----GLKGWEFDVAVIDEASQAMEP 376 (637)
T ss_pred HhhCCEEEeccCc--H-----hhccCCCCEEEEECccccchH
Confidence 3456777777552 2 233456779999999877653
No 366
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=33.23 E-value=1.4e+02 Score=19.35 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=48.9
Q ss_pred CeeEEEehh-----H-HHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCC-cEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP-----I-VQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP-DIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P-----L-a~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
..+.|.+.| . +.|+.+.-++.++.-+..+.++.-+.+......=-..|. +++...--|-..+-+...+.+...
T Consensus 45 k~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~eg 124 (158)
T COG2077 45 KKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIENVITLSDFRDRAFGENYGVLINEG 124 (158)
T ss_pred ceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccc
Confidence 467888999 4 445444434444545555666655555444322233443 355554444444444444444333
Q ss_pred --------cEEEEchhhhhhhcCcHHH
Q psy18035 78 --------QYVVFDEADRLFEMGFDVE 96 (104)
Q Consensus 78 --------~~lVlDEaD~ll~~gf~~~ 96 (104)
..+|+||-+...-..+.++
T Consensus 125 pL~gLlARaV~V~De~g~V~y~elv~e 151 (158)
T COG2077 125 PLAGLLARAVFVLDENGKVTYSELVPE 151 (158)
T ss_pred cccCeeeeEEEEEcCCCcEEEEEccch
Confidence 3679999877664444433
No 367
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=32.99 E-value=48 Score=23.88 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=19.7
Q ss_pred CcHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 59 TPGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 59 TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
-||-+..++. +++.=+.|.+||.|+|-
T Consensus 90 K~gDlaaiLt----~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 90 KPGDLAAILT----NLEEGDVLFIDEIHRLS 116 (332)
T ss_pred ChhhHHHHHh----cCCcCCeEEEehhhhcC
Confidence 4666666655 35666789999999984
No 368
>PRK14566 triosephosphate isomerase; Provisional
Probab=32.79 E-value=1e+02 Score=21.52 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhc----cCCceEEEEEcCccHHHHHHHhcCCCc---EEEeC
Q psy18035 14 IVQQTFKFVKELGK----FTKLQSTCLLGGDSMDNQFARLHASPD---IVVAT 59 (104)
Q Consensus 14 La~Qi~~~~~~l~~----~~~~~~~~~~g~~~~~~~~~~l~~~~~---IlV~T 59 (104)
-+++++..+++... ...-++.++|||+-..+....+...++ ++||-
T Consensus 190 ~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGg 242 (260)
T PRK14566 190 QAQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGG 242 (260)
T ss_pred HHHHHHHHHHHHHHhcCccccccceEEecCCCCHhHHHHHhcCCCCCeEEech
Confidence 66677777776533 223357888999987777777766554 56663
No 369
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=32.72 E-value=66 Score=26.89 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=13.6
Q ss_pred CCCCccEEEEchhhhhhh
Q psy18035 73 KLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 73 ~l~~l~~lVlDEaD~ll~ 90 (104)
.+...+.+|+|||-++=.
T Consensus 430 ~l~~~~vlIVDEASMv~~ 447 (988)
T PRK13889 430 LLTSRDVLVIDEAGMVGT 447 (988)
T ss_pred ccccCcEEEEECcccCCH
Confidence 356778999999996533
No 370
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=32.51 E-value=31 Score=28.18 Aligned_cols=27 Identities=11% Similarity=-0.093 Sum_probs=17.9
Q ss_pred CccEEEEchhhhhhhcC-cHHHHHhhhh
Q psy18035 76 SIQYVVFDEADRLFEMG-FDVEQQSPCD 102 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~g-f~~~i~~i~~ 102 (104)
.-.++|+|||+.+++.. +.+.+..+.+
T Consensus 733 r~~~~viDEaw~l~~~~~~a~fi~~~~k 760 (893)
T TIGR03744 733 RPIVMVTDEGHIITTNPLLAPYVVKITK 760 (893)
T ss_pred ceEEEEeehHhhhhcCHHHHHHHHHHHH
Confidence 34578999999987542 4555555443
No 371
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=32.32 E-value=1.7e+02 Score=20.24 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=24.5
Q ss_pred HHHHHHhccCCceEEEEEcCccHHHH-HHHhcC-CCcEEEeCc
Q psy18035 20 KFVKELGKFTKLQSTCLLGGDSMDNQ-FARLHA-SPDIVVATP 60 (104)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~g~~~~~~~-~~~l~~-~~~IlV~TP 60 (104)
+.++++.+...+-++..+.+...+++ ..+... +.++++||-
T Consensus 132 ~~v~~lk~~~D~IIV~~H~g~tsEk~ala~~ldg~VdvIvGtH 174 (255)
T cd07382 132 ELLEELKEEADIIFVDFHAEATSEKIALGWYLDGRVSAVVGTH 174 (255)
T ss_pred HHHHHHhcCCCEEEEEECCCCCHHHHHHHHhCCCCceEEEeCC
Confidence 44445544556667777777665443 233333 489999983
No 372
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=32.15 E-value=96 Score=22.06 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.4
Q ss_pred CCccEEEEchhhhhhhc
Q psy18035 75 SSIQYVVFDEADRLFEM 91 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~ 91 (104)
..-+.+|+|+||.|-..
T Consensus 123 ~~~kVvII~~ae~m~~~ 139 (314)
T PRK07399 123 APRKVVVIEDAETMNEA 139 (314)
T ss_pred CCceEEEEEchhhcCHH
Confidence 67899999999999654
No 373
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=32.12 E-value=87 Score=22.16 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCcEEEeCcHH-------HHHHHHhCCC--CCCCccEEEEchhhhhhhcC
Q psy18035 52 SPDIVVATPGR-------FLHIVVEMEL--KLSSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 52 ~~~IlV~TP~~-------l~~l~~~~~~--~l~~l~~lVlDEaD~ll~~g 92 (104)
.||+.+-.|.. +.++.+.-.. .-..-|.+|||+||+|-...
T Consensus 71 HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~A 120 (290)
T PRK07276 71 FSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNA 120 (290)
T ss_pred CCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHH
Confidence 48888877742 2232222111 13566899999999996543
No 374
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=32.08 E-value=60 Score=24.26 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=20.5
Q ss_pred HHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHH
Q psy18035 22 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGR 62 (104)
Q Consensus 22 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~ 62 (104)
++.|++-+++...+++......+.+..+.+.-.|+|-|-||
T Consensus 252 Lk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ILVDTaGr 292 (407)
T COG1419 252 LKTYADIMGVPLEVVYSPKELAEAIEALRDCDVILVDTAGR 292 (407)
T ss_pred HHHHHHHhCCceEEecCHHHHHHHHHHhhcCCEEEEeCCCC
Confidence 34444444455555554444444544454444555556555
No 375
>KOG1643|consensus
Probab=32.05 E-value=69 Score=21.87 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=27.7
Q ss_pred hh-HHHHHHHHHHHHhcc-----CCceEEEEEcCccHHHHHHHhcCCCc
Q psy18035 12 FP-IVQQTFKFVKELGKF-----TKLQSTCLLGGDSMDNQFARLHASPD 54 (104)
Q Consensus 12 ~P-La~Qi~~~~~~l~~~-----~~~~~~~~~g~~~~~~~~~~l~~~~~ 54 (104)
+| -|+.++..++++.+. ..-...++|||+-.....+.+.+.+|
T Consensus 176 tp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGGSV~g~N~~el~~~~d 224 (247)
T KOG1643|consen 176 TPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNGGNCKELAKKPD 224 (247)
T ss_pred CHHHHHHHHHHHHHHHhhcchhhhhhceEEEeccccccccHHHhccccc
Confidence 45 788888888888654 12345678888765555555555544
No 376
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=32.05 E-value=29 Score=22.36 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=21.5
Q ss_pred CCCccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
+.+-+++++||.+.-+|......+.+.+
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L 141 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMI 141 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 3567899999999999887666665554
No 377
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=31.95 E-value=59 Score=22.20 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=34.6
Q ss_pred CeeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHH
Q psy18035 5 NINYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 68 (104)
Q Consensus 5 ~~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~ 68 (104)
..+++|++. .+.+ +++ .+.. ++|+....+.++......|.+|+||..+..+-+
T Consensus 71 ~~kV~Vfa~~~~~~e----Ak~----aGad---~vg~edLi~~ik~~~~~fd~~iAt~d~m~~l~k 125 (229)
T CHL00129 71 TIRIAVLTNEEKITE----AKN----AGAD---IVGSDDLIEEITKGNLDFDLLIATPDMMPKLAK 125 (229)
T ss_pred CcEEEEECChHhHHH----HHH----cCCC---EeCHHHHHHHHHcCcccCCEEEECHHHHHHHHH
Confidence 456777777 4333 222 2322 567777777777777779999999987776543
No 378
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=31.67 E-value=43 Score=21.39 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=25.1
Q ss_pred eeEEEehh------HHHHHHHHHHHHhccCCceEEEEEcCcc-HHHHHHHhc-CCCcEEEeCcHH
Q psy18035 6 INYLISFP------IVQQTFKFVKELGKFTKLQSTCLLGGDS-MDNQFARLH-ASPDIVVATPGR 62 (104)
Q Consensus 6 ~~~lil~P------La~Qi~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~l~-~~~~IlV~TP~~ 62 (104)
|++.|+.- -++.+...+++++-.+.+++...+.... ..+-.+.+. ++++++|+.-|+
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~ 65 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGM 65 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEES
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCC
Confidence 45555555 5666666666654322222222221111 112222333 357888877665
No 379
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=31.61 E-value=30 Score=29.04 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=38.3
Q ss_pred hcCCCcEEEeCcHHHHH---HHHhCC------------CCCCCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 49 LHASPDIVVATPGRFLH---IVVEME------------LKLSSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 49 l~~~~~IlV~TP~~l~~---l~~~~~------------~~l~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
+..|..|.+..||+=.. ++..|. ..++...|.||||+|.-||.-...-+-.+++
T Consensus 1046 l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~ 1114 (1163)
T COG1196 1046 LTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIK 1114 (1163)
T ss_pred hhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHH
Confidence 45688999999998653 222221 2468889999999999999866655555543
No 380
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.55 E-value=2.2e+02 Score=21.12 Aligned_cols=57 Identities=7% Similarity=0.028 Sum_probs=32.7
Q ss_pred CCceEEEEEcCccH---HHHHHHhcC--CCcEEE-eCcHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 29 TKLQSTCLLGGDSM---DNQFARLHA--SPDIVV-ATPGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 29 ~~~~~~~~~g~~~~---~~~~~~l~~--~~~IlV-~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
.+.++.++..+... .+|.+.+.+ +..+.+ .++..+...+.. +++.+++++|+|.++.
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ----SKDFDLVLVDTIGKSP 267 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH----hCCCCEEEEcCCCCCc
Confidence 35677777666533 233333333 333333 355555554442 3677899999998875
No 381
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=31.38 E-value=45 Score=22.94 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=15.1
Q ss_pred cHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 60 PGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 60 P~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
++-+...+.+ ++.=..|.+||.|+|-
T Consensus 89 ~~dl~~il~~----l~~~~ILFIDEIHRln 114 (233)
T PF05496_consen 89 AGDLAAILTN----LKEGDILFIDEIHRLN 114 (233)
T ss_dssp CHHHHHHHHT------TT-EEEECTCCC--
T ss_pred HHHHHHHHHh----cCCCcEEEEechhhcc
Confidence 4556655553 4455689999999984
No 382
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=31.29 E-value=22 Score=25.36 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=16.8
Q ss_pred CCCccEEEEchhhhhhhcCcH
Q psy18035 74 LSSIQYVVFDEADRLFEMGFD 94 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~ 94 (104)
.+..+.+++||||.|-=.+|+
T Consensus 163 ~~~~~~iivDEA~~L~~~ale 183 (297)
T COG2842 163 RDTVRLIIVDEADRLPYRALE 183 (297)
T ss_pred ccCcceeeeehhhccChHHHH
Confidence 477899999999999655543
No 383
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=31.16 E-value=34 Score=22.51 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=23.4
Q ss_pred CCccEEEEchhhhh--hhcCcHHHHHhhhhc
Q psy18035 75 SSIQYVVFDEADRL--FEMGFDVEQQSPCDT 103 (104)
Q Consensus 75 ~~l~~lVlDEaD~l--l~~gf~~~i~~i~~~ 103 (104)
+.-+.+|+||.-.| .+..|.+.++.+++.
T Consensus 99 ~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 99 EEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred hcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 44679999999887 466799999998864
No 384
>KOG1015|consensus
Probab=31.15 E-value=2.3e+02 Score=24.45 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=12.0
Q ss_pred CCccEEEEchhhhhh
Q psy18035 75 SSIQYVVFDEADRLF 89 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll 89 (104)
..-+++|-||||.|=
T Consensus 820 pGPD~vVCDE~HiLK 834 (1567)
T KOG1015|consen 820 PGPDFVVCDEGHILK 834 (1567)
T ss_pred CCCCeEEecchhhhc
Confidence 345799999999874
No 385
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.05 E-value=28 Score=27.78 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=14.8
Q ss_pred CCccEEEEchhhhhhhcCcH
Q psy18035 75 SSIQYVVFDEADRLFEMGFD 94 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~ 94 (104)
..-+.+||||+|+|-...+.
T Consensus 117 gk~KV~IIDEVh~LS~~A~N 136 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFN 136 (702)
T ss_pred CCcEEEEEechHhcCHHHHH
Confidence 35689999999987655443
No 386
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=30.76 E-value=39 Score=21.11 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=15.0
Q ss_pred CCCcEEEeCcHHHHHHHH
Q psy18035 51 ASPDIVVATPGRFLHIVV 68 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~ 68 (104)
.=|.+.|||+.+|..++.
T Consensus 76 ~LP~vFVG~~~rL~~iV~ 93 (131)
T TIGR01615 76 SLPEVFVGTTERLRQLVR 93 (131)
T ss_pred hCCcceECCHHHHHHHHH
Confidence 348999999999987764
No 387
>TIGR01631 Trypano_RHS trypanosome RHS (retrotransposon hot spot) family. This model describes full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=30.54 E-value=25 Score=28.29 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=9.5
Q ss_pred CCcEEEeCcHH
Q psy18035 52 SPDIVVATPGR 62 (104)
Q Consensus 52 ~~~IlV~TP~~ 62 (104)
.++++|||||-
T Consensus 280 ~~~vlIGTPGI 290 (760)
T TIGR01631 280 ERRVLIGTPGI 290 (760)
T ss_pred CCeEEECCCCc
Confidence 37999999995
No 388
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.53 E-value=26 Score=26.84 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=15.2
Q ss_pred CCccEEEEchhhhhhhcCcH
Q psy18035 75 SSIQYVVFDEADRLFEMGFD 94 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~ 94 (104)
.+-+.+|+||+|.|-...+.
T Consensus 118 ~~~kVvIIDEad~ls~~a~n 137 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFN 137 (527)
T ss_pred CCceEEEEcCcccCCHHHHH
Confidence 55689999999988665443
No 389
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=30.48 E-value=28 Score=19.92 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.2
Q ss_pred ccEEEEchhhhhhhcCcHH
Q psy18035 77 IQYVVFDEADRLFEMGFDV 95 (104)
Q Consensus 77 l~~lVlDEaD~ll~~gf~~ 95 (104)
...+++||++.+.+.....
T Consensus 79 ~~viiiDei~~~~~~~~~~ 97 (148)
T smart00382 79 PDVLILDEITSLLDAEQEA 97 (148)
T ss_pred CCEEEEECCcccCCHHHHH
Confidence 5899999999998775443
No 390
>KOG1177|consensus
Probab=30.21 E-value=2.3e+02 Score=22.15 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=32.0
Q ss_pred EcCccHHHHHHHhcC-CCcEEEeCcHHHHHHHHhC---CCCCCCccEEEE
Q psy18035 37 LGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEM---ELKLSSIQYVVF 82 (104)
Q Consensus 37 ~g~~~~~~~~~~l~~-~~~IlV~TP~~l~~l~~~~---~~~l~~l~~lVl 82 (104)
..+.+.+...+.+.+ .+-.+.|||..+.++++.. ..+++.++-.++
T Consensus 308 ~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vi 357 (596)
T KOG1177|consen 308 APSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVI 357 (596)
T ss_pred CCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhhee
Confidence 455566666666655 4999999999999999653 345566554444
No 391
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=30.09 E-value=3.6e+02 Score=23.16 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=28.3
Q ss_pred eeEEEehh---HHHHHHHHHHHHh-----ccCCceEEEEEcCccHH-HHHHHhcCC--CcEEEeC
Q psy18035 6 INYLISFP---IVQQTFKFVKELG-----KFTKLQSTCLLGGDSMD-NQFARLHAS--PDIVVAT 59 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~-----~~~~~~~~~~~g~~~~~-~~~~~l~~~--~~IlV~T 59 (104)
.++||+|. -|..+.+.+++.. ...+-.+..++|+.+.. ..++..+++ |.|+|++
T Consensus 699 ~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~~~~li~~Fk~~~~p~IlVsv 763 (1123)
T PRK11448 699 GKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDKPDQLIRRFKNERLPNIVVTV 763 (1123)
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccchHHHHHHHhCCCCCeEEEEe
Confidence 57899998 5555555544421 11223455567776533 333334433 5676665
No 392
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=29.95 E-value=31 Score=24.99 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.4
Q ss_pred CCccEEEEchhhhhhhcC
Q psy18035 75 SSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~g 92 (104)
..-+.+|+||||.|-...
T Consensus 140 g~~rVviIDeAd~l~~~a 157 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA 157 (351)
T ss_pred CCceEEEEEchhhcCHHH
Confidence 567899999999996443
No 393
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.95 E-value=30 Score=26.37 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=15.9
Q ss_pred CCCccEEEEchhhhhhhcCcH
Q psy18035 74 LSSIQYVVFDEADRLFEMGFD 94 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~ 94 (104)
...-+.+|+||+|.|-...|.
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~N 134 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFN 134 (491)
T ss_pred cCCceEEEEeChHhCCHHHHH
Confidence 367789999999988654443
No 394
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.89 E-value=26 Score=27.27 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=16.4
Q ss_pred CCCccEEEEchhhhhhhcCcH
Q psy18035 74 LSSIQYVVFDEADRLFEMGFD 94 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~ 94 (104)
...-+.+|+||+|+|-...+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~N 136 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFN 136 (584)
T ss_pred cCCceEEEEECCCcCCHHHHH
Confidence 356789999999998765544
No 395
>PHA00350 putative assembly protein
Probab=29.85 E-value=28 Score=25.87 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=12.5
Q ss_pred ccEEEEchhhhhhhc
Q psy18035 77 IQYVVFDEADRLFEM 91 (104)
Q Consensus 77 l~~lVlDEaD~ll~~ 91 (104)
=.++|+|||++++..
T Consensus 82 gaLIViDEaq~~~p~ 96 (399)
T PHA00350 82 GALYVIDEAQMIFPK 96 (399)
T ss_pred CCEEEEECchhhcCC
Confidence 358999999999855
No 396
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=29.44 E-value=1.3e+02 Score=22.74 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=20.5
Q ss_pred cHHHHHHHhcC-CCcEEEeCcHHHHHHHH
Q psy18035 41 SMDNQFARLHA-SPDIVVATPGRFLHIVV 68 (104)
Q Consensus 41 ~~~~~~~~l~~-~~~IlV~TP~~l~~l~~ 68 (104)
+.+.+.+.+.. ++.+++|||..++.+-+
T Consensus 170 ~~~~~~~l~~df~~tvI~~tps~~l~lae 198 (438)
T COG1541 170 NTERQLELMKDFKPTVIAATPSYLLYLAE 198 (438)
T ss_pred cHHHHHHHHHhcCCcEEEEChHHHHHHHH
Confidence 45556555554 59999999999886664
No 397
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=29.37 E-value=2.5e+02 Score=21.18 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=43.9
Q ss_pred CCeeEEEehh-------HHHHHHHHHHHHhccCCceEEEEEcCcc---HHHHHHHhcCCCcEEEeCcHHHH-H------H
Q psy18035 4 ANINYLISFP-------IVQQTFKFVKELGKFTKLQSTCLLGGDS---MDNQFARLHASPDIVVATPGRFL-H------I 66 (104)
Q Consensus 4 ~~~~~lil~P-------La~Qi~~~~~~l~~~~~~~~~~~~g~~~---~~~~~~~l~~~~~IlV~TP~~l~-~------l 66 (104)
+|=+++|+.| |+.++++.+..- +..+++.+...+.. ..+-.+.+. ..++++|-..-. . .
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n--hFDv~~~VvLIgER~~EVtdiqrsIl--g~vv~st~d~~~~~~~~~a~~ 243 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN--HPEVHLIVLLIDERPEEVTDMQRSVK--GEVVASTFDEPAERHVQVAEM 243 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh--cCCeEEEEEEeCCchhHHHHHHHHhc--CcEEEECCCCCHHHHHHHHHH
Confidence 4668999999 999988877653 45566544433333 222222232 256667643311 0 1
Q ss_pred -HHh-CCC-CCCCccEEEEchhhhhh
Q psy18035 67 -VVE-MEL-KLSSIQYVVFDEADRLF 89 (104)
Q Consensus 67 -~~~-~~~-~l~~l~~lVlDEaD~ll 89 (104)
+.. ..+ .-..=-.+++||.+++.
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChHHHH
Confidence 100 011 11122288999999874
No 398
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=29.33 E-value=53 Score=26.56 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=21.9
Q ss_pred eCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhc
Q psy18035 58 ATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 58 ~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~ 91 (104)
+.||++...+..... .-..+++||+|++-..
T Consensus 401 ~~~G~~~~~l~~~~~---~~~villDEidk~~~~ 431 (784)
T PRK10787 401 SMPGKLIQKMAKVGV---KNPLFLLDEIDKMSSD 431 (784)
T ss_pred CCCcHHHHHHHhcCC---CCCEEEEEChhhcccc
Confidence 378998877765432 2247899999999753
No 399
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=29.09 E-value=38 Score=27.54 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=19.0
Q ss_pred ccEEEEchhhhhhhc-CcHHHHHhhhh
Q psy18035 77 IQYVVFDEADRLFEM-GFDVEQQSPCD 102 (104)
Q Consensus 77 l~~lVlDEaD~ll~~-gf~~~i~~i~~ 102 (104)
-+++|+|||..+++. .+.+-++..++
T Consensus 666 r~iiviDEaW~lL~~p~~a~fi~~~~k 692 (829)
T TIGR03783 666 RKMILIEEAWKAIASANMAEYIKYLYK 692 (829)
T ss_pred cEEEEEeCHHHHhCCHHHHHHHHHHHH
Confidence 478999999999975 46655555544
No 400
>KOG0350|consensus
Probab=29.05 E-value=2.2e+02 Score=22.39 Aligned_cols=71 Identities=7% Similarity=0.084 Sum_probs=43.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
.-+.|+.+- -+......++-+-...+.++..+.|+.+.+...+.+. .+.+++||| +.+.. .+++.++
T Consensus 429 ~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcS-----D~laR-GiDv~~v 502 (620)
T KOG0350|consen 429 LNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICS-----DALAR-GIDVNDV 502 (620)
T ss_pred cceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEeh-----hhhhc-CCccccc
Confidence 446677766 4555555555333345566666788887766665554 348999999 66554 3455666
Q ss_pred cEEE
Q psy18035 78 QYVV 81 (104)
Q Consensus 78 ~~lV 81 (104)
..+|
T Consensus 503 ~~VI 506 (620)
T KOG0350|consen 503 DNVI 506 (620)
T ss_pred ceEe
Confidence 5544
No 401
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.99 E-value=1.3e+02 Score=17.88 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=23.6
Q ss_pred CeeEEEehh----HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh-cCCCcEEEe
Q psy18035 5 NINYLISFP----IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL-HASPDIVVA 58 (104)
Q Consensus 5 ~~~~lil~P----La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l-~~~~~IlV~ 58 (104)
+|.+++++- ...+..+.++.+.+...-++.++.||....++...+ ..|.+=.+.
T Consensus 50 ~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 50 DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFG 108 (122)
T ss_pred CCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEC
Confidence 455666654 223333333333332111455666665544444333 234444443
No 402
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=28.70 E-value=69 Score=21.80 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=25.1
Q ss_pred EEcCccHHHHHHHhcCCCcEEEeCcHHHHHHH
Q psy18035 36 LLGGDSMDNQFARLHASPDIVVATPGRFLHIV 67 (104)
Q Consensus 36 ~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~ 67 (104)
++|+....+.++......|.+++||..+..+-
T Consensus 92 ~vg~~eLi~~ik~~~~~fd~~iat~~~m~~l~ 123 (227)
T TIGR01169 92 YVGSDDLIEKIKKGWLDFDVVIATPDMMRVVG 123 (227)
T ss_pred EeCHHHHHHHHHcCCccCCEEEECHHHHHHHH
Confidence 56777777777777777999999998877654
No 403
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=28.47 E-value=82 Score=21.13 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=21.1
Q ss_pred CCccEEEEchhhhhhhcCc--HHHHHhhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGF--DVEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf--~~~i~~i~~ 102 (104)
...+++|+||.-..+..|+ .+++..+++
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~ 150 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLK 150 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHh
Confidence 4688999999999999986 345554443
No 404
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.41 E-value=24 Score=22.59 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=13.9
Q ss_pred CccEEEEchhhhhhhcC
Q psy18035 76 SIQYVVFDEADRLFEMG 92 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~g 92 (104)
+=..+|+||.|+|+.-|
T Consensus 114 ~dEvlVVne~d~LlAvG 130 (155)
T COG1370 114 GDEVLVVNEDDELLAVG 130 (155)
T ss_pred CCeEEEECCCCcEEEee
Confidence 34589999999998765
No 405
>CHL00181 cbbX CbbX; Provisional
Probab=28.03 E-value=53 Score=22.98 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=10.9
Q ss_pred cEEEEchhhhhhh
Q psy18035 78 QYVVFDEADRLFE 90 (104)
Q Consensus 78 ~~lVlDEaD~ll~ 90 (104)
..+++||+|.+..
T Consensus 124 gVLfIDE~~~l~~ 136 (287)
T CHL00181 124 GVLFIDEAYYLYK 136 (287)
T ss_pred CEEEEEccchhcc
Confidence 5899999999853
No 406
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=27.74 E-value=1.5e+02 Score=20.06 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=16.5
Q ss_pred EEEcCccHHHHHHHhcC-CC-cEEEeC
Q psy18035 35 CLLGGDSMDNQFARLHA-SP-DIVVAT 59 (104)
Q Consensus 35 ~~~g~~~~~~~~~~l~~-~~-~IlV~T 59 (104)
.+-||....++.+.+.+ ++ .|+|||
T Consensus 179 ~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 179 IVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 34577777777777766 65 456666
No 407
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.52 E-value=34 Score=25.92 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=15.0
Q ss_pred CCCccEEEEchhhhhhhcCc
Q psy18035 74 LSSIQYVVFDEADRLFEMGF 93 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf 93 (104)
...-+.+|+||||.|-...+
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~ 136 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF 136 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH
Confidence 35678999999998865443
No 408
>PRK04132 replication factor C small subunit; Provisional
Probab=27.48 E-value=66 Score=26.39 Aligned_cols=15 Identities=40% Similarity=0.611 Sum_probs=12.6
Q ss_pred CccEEEEchhhhhhh
Q psy18035 76 SIQYVVFDEADRLFE 90 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~ 90 (104)
+-+.+++||||.|-.
T Consensus 630 ~~KVvIIDEaD~Lt~ 644 (846)
T PRK04132 630 SFKIIFLDEADALTQ 644 (846)
T ss_pred CCEEEEEECcccCCH
Confidence 458999999999954
No 409
>KOG2228|consensus
Probab=27.39 E-value=1.2e+02 Score=22.62 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCCCCccEEEEchhhhhhhcC
Q psy18035 62 RFLHIVVEMELKLSSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 62 ~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~g 92 (104)
.++..++++.-..+.--+||+||.|......
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~ 153 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHS 153 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccch
Confidence 4455556655555555789999999876543
No 410
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=27.38 E-value=31 Score=26.60 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=15.6
Q ss_pred CCCccEEEEchhhhhhhcCcH
Q psy18035 74 LSSIQYVVFDEADRLFEMGFD 94 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~ 94 (104)
...-+.+|+||+|.|-...+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n 137 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN 137 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH
Confidence 356789999999988654433
No 411
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=27.37 E-value=27 Score=20.99 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=10.2
Q ss_pred CccEEEEchhhhhh
Q psy18035 76 SIQYVVFDEADRLF 89 (104)
Q Consensus 76 ~l~~lVlDEaD~ll 89 (104)
+=.++++||+++.-
T Consensus 65 ~~~il~lDEin~a~ 78 (139)
T PF07728_consen 65 KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEEESSCGG--
T ss_pred ceeEEEECCcccCC
Confidence 56689999999654
No 412
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=27.09 E-value=1.8e+02 Score=18.89 Aligned_cols=47 Identities=13% Similarity=-0.000 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---h-cCCCcEEEeCc
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---L-HASPDIVVATP 60 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l-~~~~~IlV~TP 60 (104)
-..++.+.+++-++..++++.....+.+...+... + ..+++-+|.+|
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~ 63 (259)
T cd01542 13 STSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLA 63 (259)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34455555555555667887777665554443332 2 34677666654
No 413
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=26.78 E-value=2.2e+02 Score=19.58 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=33.2
Q ss_pred CceEEEEEcCccHHHH-------HHHhcCCCcEEEeCcHHHH-HHHHh---CC-----CC-CCCccEEEEchhhhh
Q psy18035 30 KLQSTCLLGGDSMDNQ-------FARLHASPDIVVATPGRFL-HIVVE---ME-----LK-LSSIQYVVFDEADRL 88 (104)
Q Consensus 30 ~~~~~~~~g~~~~~~~-------~~~l~~~~~IlV~TP~~l~-~l~~~---~~-----~~-l~~l~~lVlDEaD~l 88 (104)
.-...+++|+....+. ......|..+++.|-..+. ++-.. +. .. +++++.|||||.-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 4556778886542221 1122346666666544444 43321 11 23 789999999996554
No 414
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=26.39 E-value=78 Score=21.77 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=13.0
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
..-+.+++||+|.+-.
T Consensus 101 ~~~~vviiDe~~~l~~ 116 (319)
T PRK00440 101 APFKIIFLDEADNLTS 116 (319)
T ss_pred CCceEEEEeCcccCCH
Confidence 4567999999998854
No 415
>PF13072 DUF3936: Protein of unknown function (DUF3936)
Probab=26.29 E-value=82 Score=15.29 Aligned_cols=27 Identities=22% Similarity=0.114 Sum_probs=21.2
Q ss_pred CCCeeEEEehhHHHHHHHHHHHHhccC
Q psy18035 3 FANINYLISFPIVQQTFKFVKELGKFT 29 (104)
Q Consensus 3 ~~~~~~lil~PLa~Qi~~~~~~l~~~~ 29 (104)
+..+..++++--|-||...++++.+..
T Consensus 4 y~~~~~i~lvGKAWeIr~~Lkey~k~~ 30 (38)
T PF13072_consen 4 YRHENGIILVGKAWEIRAKLKEYGKQF 30 (38)
T ss_pred EecCCeEEEEehHHHHHHHHHHHHHhh
Confidence 346778888888999999999887643
No 416
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.01 E-value=38 Score=26.18 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=15.1
Q ss_pred CCCccEEEEchhhhhhhcCc
Q psy18035 74 LSSIQYVVFDEADRLFEMGF 93 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf 93 (104)
..+-+.+++||||+|-...+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~ 136 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSF 136 (546)
T ss_pred cCCcEEEEEechhhccHHHH
Confidence 35668999999999865443
No 417
>PF13479 AAA_24: AAA domain
Probab=26.00 E-value=71 Score=21.09 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=29.7
Q ss_pred CCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhhc
Q psy18035 51 ASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~~ 91 (104)
+...+-|.++..+.+.+..-.-.....+.+|+|-++.+.+.
T Consensus 43 ~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~~~ 83 (213)
T PF13479_consen 43 DGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWLEDM 83 (213)
T ss_pred CCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHHHHH
Confidence 44566677999998876532222678999999999998655
No 418
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.95 E-value=47 Score=25.12 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=13.9
Q ss_pred CCCccEEEEchhhhhhh
Q psy18035 74 LSSIQYVVFDEADRLFE 90 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~ 90 (104)
+.+-+.+++||+|.|-.
T Consensus 115 ~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTK 131 (472)
T ss_pred cCCeEEEEEEChHHhHH
Confidence 45678999999999854
No 419
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A.
Probab=25.94 E-value=2e+02 Score=18.96 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHh
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVE 69 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~ 69 (104)
+..+-......+.+.+++++..... .+..+..+.+.++ .|+++..|.....+.+.
T Consensus 12 ~~~~~~~l~~~L~~~~g~~v~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~ 67 (243)
T PF12974_consen 12 LQQRWAPLADYLSKQLGVPVELVPA-DDYAEFIEALRSGEIDLAFMGPLPYVQARQR 67 (243)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEE---SSHHHHHHHHHTTS-SEEE--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEc-CCHHHHHHHHHcCCccEEEECcHHHHHHhhc
Confidence 3334444555556667887666554 4455555666655 99999999988877655
No 420
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=25.90 E-value=52 Score=17.67 Aligned_cols=7 Identities=14% Similarity=0.539 Sum_probs=3.7
Q ss_pred EEEEcCc
Q psy18035 34 TCLLGGD 40 (104)
Q Consensus 34 ~~~~g~~ 40 (104)
.+.+|+.
T Consensus 24 ~~~VGD~ 30 (75)
T PF13242_consen 24 CVMVGDS 30 (75)
T ss_dssp EEEEESS
T ss_pred EEEEcCC
Confidence 4455555
No 421
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=25.70 E-value=3.3e+02 Score=21.28 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=37.6
Q ss_pred eEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCC--cEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 7 NYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP--DIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
.++|+.| -.+++.+.++..... .....-|..+..+..+.-.... -++|+|. .+.+.-.+.-+.++.+|
T Consensus 481 ~~lvlF~Sy~~l~~~~~~~~~~~~~---~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~g----sf~EGVD~~g~~l~~vv 553 (654)
T COG1199 481 GVLVLFPSYEYLKRVAERLKDERST---LPVLTQGEDEREELLEKFKASGEGLILVGGG----SFWEGVDFPGDALRLVV 553 (654)
T ss_pred CEEEEeccHHHHHHHHHHHhhcCcc---ceeeecCCCcHHHHHHHHHHhcCCeEEEeec----cccCcccCCCCCeeEEE
Confidence 6888888 555555555543221 2233344455554555555544 4888884 22232234446667777
Q ss_pred Ec
Q psy18035 82 FD 83 (104)
Q Consensus 82 lD 83 (104)
|+
T Consensus 554 I~ 555 (654)
T COG1199 554 IV 555 (654)
T ss_pred EE
Confidence 65
No 422
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.59 E-value=1.3e+02 Score=22.17 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=4.9
Q ss_pred cEEEeCcHHH
Q psy18035 54 DIVVATPGRF 63 (104)
Q Consensus 54 ~IlV~TP~~l 63 (104)
-|+|-|||+.
T Consensus 218 lVLIDTaG~~ 227 (374)
T PRK14722 218 MVLIDTIGMS 227 (374)
T ss_pred EEEEcCCCCC
Confidence 3445555544
No 423
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.58 E-value=42 Score=25.62 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=13.8
Q ss_pred CCCccEEEEchhhhhhh
Q psy18035 74 LSSIQYVVFDEADRLFE 90 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~ 90 (104)
+..-+.+|+||+|.|-.
T Consensus 114 ~~~~kVVIIDEad~ls~ 130 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK 130 (504)
T ss_pred cCCCeEEEEECccccCH
Confidence 46778999999998743
No 424
>PRK07413 hypothetical protein; Validated
Probab=25.46 E-value=90 Score=23.13 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=21.9
Q ss_pred CCCccEEEEchhhhhhhcCc--HHHHHhhhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGF--DVEQQSPCD 102 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf--~~~i~~i~~ 102 (104)
-...+++|+||.-..++.|+ .+++..+++
T Consensus 123 sg~ydlvILDEi~~Al~~gll~~eevl~~L~ 153 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVNTLK 153 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHH
Confidence 35678999999999999997 445555443
No 425
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=25.43 E-value=34 Score=22.42 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=9.1
Q ss_pred CccEEEEchhhhh
Q psy18035 76 SIQYVVFDEADRL 88 (104)
Q Consensus 76 ~l~~lVlDEaD~l 88 (104)
..+++|+|||=.+
T Consensus 90 ~~DlliVDEAAaI 102 (177)
T PF05127_consen 90 QADLLIVDEAAAI 102 (177)
T ss_dssp --SCEEECTGGGS
T ss_pred CCCEEEEechhcC
Confidence 3479999999644
No 426
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=25.40 E-value=2e+02 Score=18.70 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=12.3
Q ss_pred CCCccEEEEchhhhhhhc
Q psy18035 74 LSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~ 91 (104)
+..-+.+|+|||.++-..
T Consensus 91 ~~~~~vliVDEasmv~~~ 108 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVDSR 108 (196)
T ss_dssp -TSTSEEEESSGGG-BHH
T ss_pred CCcccEEEEecccccCHH
Confidence 455689999999976433
No 427
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=25.32 E-value=85 Score=26.62 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=12.9
Q ss_pred CCCCccEEEEchhhhhh
Q psy18035 73 KLSSIQYVVFDEADRLF 89 (104)
Q Consensus 73 ~l~~l~~lVlDEaD~ll 89 (104)
.+..-..+|+|||-++=
T Consensus 465 ~l~~~~vlVIDEAsMv~ 481 (1102)
T PRK13826 465 QLDNKTVFVLDEAGMVA 481 (1102)
T ss_pred CCCCCcEEEEECcccCC
Confidence 35567799999999553
No 428
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.31 E-value=45 Score=26.30 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=13.6
Q ss_pred CCccEEEEchhhhhhhc
Q psy18035 75 SSIQYVVFDEADRLFEM 91 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~ 91 (104)
..-+.+||||+|.|-..
T Consensus 118 g~~kVIIIDEad~Lt~~ 134 (624)
T PRK14959 118 GRYKVFIIDEAHMLTRE 134 (624)
T ss_pred CCceEEEEEChHhCCHH
Confidence 55689999999998533
No 429
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=25.29 E-value=57 Score=22.17 Aligned_cols=18 Identities=44% Similarity=0.708 Sum_probs=15.0
Q ss_pred CCCcEEEeCcHHHHHHHH
Q psy18035 51 ASPDIVVATPGRFLHIVV 68 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~ 68 (104)
.=|.+.|||+.+|..+++
T Consensus 165 ~lP~vfVG~~~~L~~iV~ 182 (218)
T PF04720_consen 165 ALPEVFVGTPERLKQIVR 182 (218)
T ss_pred hCCCceEcCHHHHHHHHH
Confidence 348999999999987764
No 430
>KOG2824|consensus
Probab=25.28 E-value=36 Score=24.06 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.6
Q ss_pred EEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
+.+||=|.-++.+|.++++.++..
T Consensus 162 V~v~ERDVSMd~~fr~EL~~~lg~ 185 (281)
T KOG2824|consen 162 VKVDERDVSMDSEFREELQELLGE 185 (281)
T ss_pred eEEEEecccccHHHHHHHHHHHhc
Confidence 578999999999999999998864
No 431
>PRK11564 stationary phase inducible protein CsiE; Provisional
Probab=25.23 E-value=1.7e+02 Score=21.46 Aligned_cols=50 Identities=12% Similarity=0.025 Sum_probs=27.0
Q ss_pred CeeEEEehh----HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhc-CCCcEEEeC
Q psy18035 5 NINYLISFP----IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVAT 59 (104)
Q Consensus 5 ~~~~lil~P----La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~IlV~T 59 (104)
..+++|+|| ++..+.+.++++-.. ++.+. ..+..+-..... .++|++++|
T Consensus 338 ~~~vlvVC~~G~~~~~~L~~~l~~~~~~-~~~i~----~~s~~~~~~~~~~~~~DlIiSt 392 (426)
T PRK11564 338 EKQILLLTGDNPELEAQIEQQLRELTLL-PLNIK----YLSVKAFQQSGAPRGVALIITP 392 (426)
T ss_pred cceEEEEeCCCHHHHHHHHHHhhhceec-ccccc----cccHHHHHhccCCCCCcEEEec
Confidence 468999999 666776766654211 12221 122222211222 369999996
No 432
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=25.22 E-value=2.3e+02 Score=19.27 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=35.8
Q ss_pred eeEEEehhHHHHHHHHHHHHhccCCceEEEEEc--CccHHHHHHHhcC--CC--cEEEeCcHH----HHHHH----HhCC
Q psy18035 6 INYLISFPIVQQTFKFVKELGKFTKLQSTCLLG--GDSMDNQFARLHA--SP--DIVVATPGR----FLHIV----VEME 71 (104)
Q Consensus 6 ~~~lil~PLa~Qi~~~~~~l~~~~~~~~~~~~g--~~~~~~~~~~l~~--~~--~IlV~TP~~----l~~l~----~~~~ 71 (104)
+.-+|++||....+..+-.-.. .. .....+| |+...+..+.+.. |. -+.=++++. +.+++ ..|.
T Consensus 9 ~~rlv~Tplt~r~~~~l~~al~-~~-~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~Ga 86 (231)
T PF12774_consen 9 SPRLVITPLTDRCFLTLTQALS-LN-LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGA 86 (231)
T ss_dssp -------HHHHHHHHHHHHHHC-TT-TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-
T ss_pred CCCceechHHHHHHHHHHHHhc-cC-CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCc
Confidence 4468999976666654443332 12 2334455 4566777777754 32 333334433 22222 3344
Q ss_pred CCCCCccEEEEchhhhhh
Q psy18035 72 LKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 72 ~~l~~l~~lVlDEaD~ll 89 (104)
++++||.++|-
T Consensus 87 -------W~cfdefnrl~ 97 (231)
T PF12774_consen 87 -------WLCFDEFNRLS 97 (231)
T ss_dssp -------EEEEETCCCSS
T ss_pred -------hhhhhhhhhhh
Confidence 89999999884
No 433
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.22 E-value=41 Score=26.08 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=15.1
Q ss_pred CCCccEEEEchhhhhhhcCc
Q psy18035 74 LSSIQYVVFDEADRLFEMGF 93 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf 93 (104)
...-+.+|+||+|+|-...+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~ 136 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAF 136 (576)
T ss_pred cCCceEEEEEChhhCCHHHH
Confidence 35678999999998865433
No 434
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.10 E-value=47 Score=24.28 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=14.8
Q ss_pred CCCccEEEEchhhhhhhc
Q psy18035 74 LSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~ 91 (104)
+..-+.+|+||+|.|-..
T Consensus 125 ~~~~kvvIIdea~~l~~~ 142 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA 142 (397)
T ss_pred cCCeEEEEEeChhhCCHH
Confidence 467789999999999654
No 435
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.04 E-value=49 Score=23.66 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.5
Q ss_pred CCCccEEEEchhhhhhhc
Q psy18035 74 LSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~ 91 (104)
+.+-+.+++||+|.|-..
T Consensus 106 ~~~~kiviIDE~~~l~~~ 123 (367)
T PRK14970 106 TGKYKIYIIDEVHMLSSA 123 (367)
T ss_pred cCCcEEEEEeChhhcCHH
Confidence 466789999999988653
No 436
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=24.99 E-value=40 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=21.7
Q ss_pred CCccEEEEchhhhhhh-cCcHHHHHhhhh
Q psy18035 75 SSIQYVVFDEADRLFE-MGFDVEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~-~gf~~~i~~i~~ 102 (104)
..-+++++||+..+++ ..|.+.+..+++
T Consensus 641 g~p~il~iDE~w~~L~~~~~~~~i~~~lk 669 (800)
T PRK13898 641 GTPSMIVLDEAWALIDNPVFAPKIKDWLK 669 (800)
T ss_pred CCCcEEEEeCChhhCCCHHHHHHHHHHHH
Confidence 4567999999999998 466767666654
No 437
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=24.89 E-value=80 Score=21.78 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=12.4
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
..-..+++||+|.+-.
T Consensus 80 ~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSP 95 (305)
T ss_pred ccCCEEEEehHhhhCH
Confidence 3446899999998854
No 438
>PRK10536 hypothetical protein; Provisional
Probab=24.82 E-value=38 Score=23.69 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=10.3
Q ss_pred cEEEEchhhhhh
Q psy18035 78 QYVVFDEADRLF 89 (104)
Q Consensus 78 ~~lVlDEaD~ll 89 (104)
.++|+|||..+-
T Consensus 178 ~~vIvDEaqn~~ 189 (262)
T PRK10536 178 AVVILDEAQNVT 189 (262)
T ss_pred CEEEEechhcCC
Confidence 799999999763
No 439
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=24.69 E-value=42 Score=26.91 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=14.3
Q ss_pred CCccEEEEchhhhhhhcCc
Q psy18035 75 SSIQYVVFDEADRLFEMGF 93 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf 93 (104)
..-+.+||||+|.|-...+
T Consensus 118 gk~KVIIIDEad~Ls~~A~ 136 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAF 136 (709)
T ss_pred CCcEEEEEECccccCHHHH
Confidence 5668999999998754433
No 440
>PRK11260 cystine transporter subunit; Provisional
Probab=24.44 E-value=2.3e+02 Score=19.00 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEe----CcHHHHHHH
Q psy18035 21 FVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVA----TPGRFLHIV 67 (104)
Q Consensus 21 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~----TP~~l~~l~ 67 (104)
.++.+.+..++++.... .+.......+.+| +|++++ ||+|-..+.
T Consensus 70 l~~~i~~~lg~~~e~~~--~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~ 119 (266)
T PRK11260 70 FAEALAKHLGVKASLKP--TKWDGMLASLDSKRIDVVINQVTISDERKKKYD 119 (266)
T ss_pred HHHHHHHHHCCeEEEEe--CCHHHHHHHHhcCCCCEEEeccccCHHHHhccc
Confidence 33444444566655544 3455666677766 899875 566644433
No 441
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=24.31 E-value=42 Score=25.08 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=19.9
Q ss_pred EeCcHHHHHHHHhCCC----CCCCccEEEEchhhhhhh
Q psy18035 57 VATPGRFLHIVVEMEL----KLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 57 V~TP~~l~~l~~~~~~----~l~~l~~lVlDEaD~ll~ 90 (104)
+|.|++++.-+-...- .-..-..+.|||.|.++.
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g 226 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAG 226 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCC
Confidence 5566666633322111 113456899999999874
No 442
>PF10995 DUF2819: Protein of unknown function (DUF2819); InterPro: IPR017745 This protein, called BcsE (bacterial cellulose synthase E) or YhjS, is required for cellulose biosynthesis in Salmonella enteritidis. Its role is this process across multiple bacterial species is implied by the partial phylogenetic profiling algorithm []. The protein is encoded in the vicinity of other cellulose biosynthesis genes and has been [] suggested to act as a protease.
Probab=24.21 E-value=2.6e+02 Score=20.21 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEe---CcHHHHHHHHh
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVA---TPGRFLHIVVE 69 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~---TP~~l~~l~~~ 69 (104)
||.|+++.=++-++..++-+.-.-.-.....+.-.|.-|.+.||- .+.|++.+++.
T Consensus 122 LA~~ih~LRr~~G~~LKIvVRE~~~~LRy~DE~LLL~~GaNlIvp~~~p~sR~lt~ies 180 (316)
T PF10995_consen 122 LARQIHQLRRQRGSALKIVVREMGQCLRYQDERLLLACGANLIVPFNAPLSRFLTLIES 180 (316)
T ss_pred HHHHHHHHHHhcCccceEEEEecchhHHHHHHHHHHhcCCCEEeecCCCHHHHHHHHHH
Confidence 899998876665554433333222223344555557788999986 45666666653
No 443
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=24.15 E-value=51 Score=24.52 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=9.2
Q ss_pred EEEEchhhhhhhcC
Q psy18035 79 YVVFDEADRLFEMG 92 (104)
Q Consensus 79 ~lVlDEaD~ll~~g 92 (104)
.|.+||+|. ||..
T Consensus 281 VLFIDEvHm-LDiE 293 (398)
T PF06068_consen 281 VLFIDEVHM-LDIE 293 (398)
T ss_dssp EEEEESGGG-SBHH
T ss_pred eEEecchhh-ccHH
Confidence 678999994 4443
No 444
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=24.05 E-value=3.3e+02 Score=21.88 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=29.1
Q ss_pred EEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeC
Q psy18035 8 YLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVAT 59 (104)
Q Consensus 8 ~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~T 59 (104)
+||.+. -+..+.+.++ ..++++..+.|..+..+....... ...|+|+|
T Consensus 476 vLIft~t~~~se~L~~~L~----~~gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVAT 528 (656)
T PRK12898 476 VLVGTRSVAASERLSALLR----EAGLPHQVLNAKQDAEEAAIVARAGQRGRITVAT 528 (656)
T ss_pred EEEEeCcHHHHHHHHHHHH----HCCCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEc
Confidence 788888 5554444444 347888888887654433222222 24788888
No 445
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=23.90 E-value=40 Score=26.03 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=15.1
Q ss_pred CCCccEEEEchhhhhhhcC
Q psy18035 74 LSSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~g 92 (104)
...-+.+|+||||+|-...
T Consensus 115 ~~~~KVvIIDEad~Lt~~A 133 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA 133 (535)
T ss_pred cCCeEEEEEECcccCCHHH
Confidence 4677899999999986543
No 446
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=23.82 E-value=16 Score=20.20 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=9.9
Q ss_pred EEchhhhhhhcCcHHHHH
Q psy18035 81 VFDEADRLFEMGFDVEQQ 98 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~ 98 (104)
+|||.|-+|+.+=++-++
T Consensus 44 lLDeID~vLE~NAeeFVr 61 (69)
T PF05639_consen 44 LLDEIDSVLETNAEEFVR 61 (69)
T ss_dssp HHHHHTTTSSSC------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999888876544443
No 447
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=23.73 E-value=2.5e+02 Score=19.20 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=10.8
Q ss_pred eEEEehhHHHHHHHHHHHHhc
Q psy18035 7 NYLISFPIVQQTFKFVKELGK 27 (104)
Q Consensus 7 ~~lil~PLa~Qi~~~~~~l~~ 27 (104)
+.=|++|+..|+....+++..
T Consensus 127 ~vGVivP~~eQ~~~~~~kW~~ 147 (221)
T PF07302_consen 127 QVGVIVPLPEQIAQQAEKWQP 147 (221)
T ss_pred eEEEEecCHHHHHHHHHHHHh
Confidence 344555555555555555443
No 448
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=23.72 E-value=48 Score=24.45 Aligned_cols=40 Identities=30% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCcEEEeCcHH-------HHHHHHhCC--CCCCCccEEEEchhhhhhhc
Q psy18035 52 SPDIVVATPGR-------FLHIVVEME--LKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 52 ~~~IlV~TP~~-------l~~l~~~~~--~~l~~l~~lVlDEaD~ll~~ 91 (104)
.||+.+-+|.. +.++.+.-. -...+-+.+++||+|+|-..
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~ 132 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER 132 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH
Confidence 47887766631 223332211 12356789999999999654
No 449
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=23.65 E-value=3.3e+02 Score=22.38 Aligned_cols=51 Identities=16% Similarity=0.058 Sum_probs=30.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVAT 59 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~T 59 (104)
+-.+||.|. -+..+.+.+. ..++++..+.|....++....... ...|+|+|
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~----~~gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIAT 483 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLD----EAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVAT 483 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHH----HCCCCEEEecCCccHHHHHHHHHcCCCCeEEEEc
Confidence 456777777 4444443333 347888888888665443333322 24788888
No 450
>KOG0551|consensus
Probab=23.38 E-value=98 Score=22.83 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=35.9
Q ss_pred EeCcHHHHHHHHhC--------CCCCCCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 57 VATPGRFLHIVVEM--------ELKLSSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 57 V~TP~~l~~l~~~~--------~~~l~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
-+|++-++..+-++ ..+++++..++=||++-++..|=..++.+|++
T Consensus 299 ~tT~~elL~~vl~~p~~wD~~~~y~p~nv~Vf~e~~~~gL~kV~~~~~~~~iL~ 352 (390)
T KOG0551|consen 299 LTTVIELLKTVLGEPAPWDLEQKYNPDNVLVFMETEAGGLIKVGKKSTLLDILK 352 (390)
T ss_pred cccHHHHHHHHhCCCCCCCHHhccCccceeEEEeccccceeeccccchHHHHHc
Confidence 47888887665433 46789999999999999888887777777764
No 451
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.23 E-value=2e+02 Score=20.01 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-Cc-EEEeCcHHHHHHHH
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PD-IVVATPGRFLHIVV 68 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~-IlV~TP~~l~~l~~ 68 (104)
+..++.+.++.+-+.++..+. +-+|.+..++.+.+... +| ++||+ .+.+.+.
T Consensus 186 ~~~~~~~~i~~ir~~t~~Pi~-vGFGI~~~e~~~~~~~~GADGvVVGS--alv~~i~ 239 (263)
T CHL00200 186 LDKKLKKLIETIKKMTNKPII-LGFGISTSEQIKQIKGWNINGIVIGS--ACVQILL 239 (263)
T ss_pred ccHHHHHHHHHHHHhcCCCEE-EECCcCCHHHHHHHHhcCCCEEEECH--HHHHHHH
Confidence 344555555555555555444 46677877777776654 76 66777 4555554
No 452
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.23 E-value=54 Score=25.42 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.0
Q ss_pred CCCccEEEEchhhhhhhcC
Q psy18035 74 LSSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~g 92 (104)
+..-+.+||||+|.|-...
T Consensus 118 ~~~~kVvIIDEa~~L~~~a 136 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA 136 (585)
T ss_pred cCCeEEEEEeChHhCCHHH
Confidence 4677899999999886543
No 453
>KOG1805|consensus
Probab=23.16 E-value=65 Score=27.03 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=24.5
Q ss_pred cCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhh
Q psy18035 50 HASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 50 ~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~ 90 (104)
-+.+.|+.+|=--+.+.+ +..+..+|.|+|||-++..
T Consensus 774 ~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 774 LDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred hCCCcEEEEEccCCCchh----hhccccCEEEEcccccccc
Confidence 356888888843333222 2345577999999998853
No 454
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=22.95 E-value=1.9e+02 Score=19.74 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=12.5
Q ss_pred EcCccHHHHHHHhcC-CC-cEEEeC
Q psy18035 37 LGGDSMDNQFARLHA-SP-DIVVAT 59 (104)
Q Consensus 37 ~g~~~~~~~~~~l~~-~~-~IlV~T 59 (104)
-||....++.+.+.+ ++ .|+|||
T Consensus 185 GGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 185 GGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred ecCCCCHHHHHHHHHcCCCEEEECc
Confidence 455666666666555 44 344555
No 455
>KOG0334|consensus
Probab=22.91 E-value=2.7e+02 Score=23.56 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=42.5
Q ss_pred eEEEehhHHHHHHHHHHHHhccCCceEEEEEcCccHH---HHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEEE
Q psy18035 7 NYLISFPIVQQTFKFVKELGKFTKLQSTCLLGGDSMD---NQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVVF 82 (104)
Q Consensus 7 ~~lil~PLa~Qi~~~~~~l~~~~~~~~~~~~g~~~~~---~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lVl 82 (104)
.++|+|--..+.....+.|. ..++.|..+.||.+.. ..+.+.+++ +.++|+|.- -...++++++..+|-
T Consensus 615 ~tiiFv~~qe~~d~l~~~L~-~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv------varGLdv~~l~Lvvn 687 (997)
T KOG0334|consen 615 KTIIFVDKQEKADALLRDLQ-KAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV------VARGLDVKELILVVN 687 (997)
T ss_pred CEEEEEcCchHHHHHHHHHH-hcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh------hhcccccccceEEEE
Confidence 44555552222222333443 3467777788988753 344555665 799999952 345667788887776
Q ss_pred chh
Q psy18035 83 DEA 85 (104)
Q Consensus 83 DEa 85 (104)
+.+
T Consensus 688 yd~ 690 (997)
T KOG0334|consen 688 YDF 690 (997)
T ss_pred ccc
Confidence 543
No 456
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=22.79 E-value=40 Score=22.65 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=11.5
Q ss_pred CccEEEEchhhhhhh
Q psy18035 76 SIQYVVFDEADRLFE 90 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~ 90 (104)
.-..+|+||+|.+-.
T Consensus 123 ~~~vliiDe~~~l~~ 137 (269)
T TIGR03015 123 KRALLVVDEAQNLTP 137 (269)
T ss_pred CCeEEEEECcccCCH
Confidence 345889999998753
No 457
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=22.70 E-value=78 Score=22.61 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=11.3
Q ss_pred CccEEEEchhhhhh
Q psy18035 76 SIQYVVFDEADRLF 89 (104)
Q Consensus 76 ~l~~lVlDEaD~ll 89 (104)
-++.+|+||.|.-.
T Consensus 254 ~~d~~vid~~D~~~ 267 (297)
T TIGR01819 254 FLDVFVVDEVDKAD 267 (297)
T ss_pred cccEEEEecCchhh
Confidence 35899999999654
No 458
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=22.66 E-value=55 Score=26.34 Aligned_cols=27 Identities=11% Similarity=-0.132 Sum_probs=19.2
Q ss_pred CccEEEEchhhhhhhcC-cHHHHHhhhh
Q psy18035 76 SIQYVVFDEADRLFEMG-FDVEQQSPCD 102 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~g-f~~~i~~i~~ 102 (104)
.-..+++|||..+++.. |.+.++..++
T Consensus 627 r~~ii~iDEaw~~l~~~~~~~~i~~~~k 654 (789)
T PRK13853 627 RRFVMSCDEFRAYLLNPKFAAVVDKFLL 654 (789)
T ss_pred CcEEEEEechhHHhCCHHHHHHHHHHHH
Confidence 44567999999998764 6666666554
No 459
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.42 E-value=49 Score=25.34 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=14.4
Q ss_pred CCCccEEEEchhhhhhhcC
Q psy18035 74 LSSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~g 92 (104)
..+-+.+|+||+|.|-...
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a 144 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGA 144 (507)
T ss_pred cCCcEEEEEEChhhcCHHH
Confidence 3567899999999885533
No 460
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=22.40 E-value=58 Score=22.93 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=14.1
Q ss_pred CCCccEEEEchhhhhhhc
Q psy18035 74 LSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~ 91 (104)
+..-+.+|+||||.|-..
T Consensus 115 ~~~~~vviidea~~l~~~ 132 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSKS 132 (355)
T ss_pred cCCceEEEEeChhhcCHH
Confidence 456689999999988543
No 461
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.35 E-value=3.5e+02 Score=20.43 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=9.0
Q ss_pred CCc-EEEeCcHHHH
Q psy18035 52 SPD-IVVATPGRFL 64 (104)
Q Consensus 52 ~~~-IlV~TP~~l~ 64 (104)
+.| |+|=||||+.
T Consensus 182 ~~DvViIDTaGr~~ 195 (429)
T TIGR01425 182 NFDIIIVDTSGRHK 195 (429)
T ss_pred CCCEEEEECCCCCc
Confidence 444 6677999874
No 462
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=22.26 E-value=2.8e+02 Score=19.30 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=40.8
Q ss_pred eeEEEehh-HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhc---CCCcEEEe--CcH-H-------HHHHHHhCC
Q psy18035 6 INYLISFP-IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---ASPDIVVA--TPG-R-------FLHIVVEME 71 (104)
Q Consensus 6 ~~~lil~P-La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~IlV~--TP~-~-------l~~l~~~~~ 71 (104)
+--+|+.+ ..+.+.+..+-+....+--..+-.||+....-. ++. .+.++.=- |.+ . +...+.+..
T Consensus 7 ~m~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~-rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag 85 (268)
T PF12780_consen 7 KMNLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLA-RLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAG 85 (268)
T ss_dssp -------HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHH-HHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHH
T ss_pred ccceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHH-HHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHh
Confidence 44577788 777777777777643322222223454444332 232 22222211 221 1 223333323
Q ss_pred CCCCCccEEEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 72 LKLSSIQYVVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 72 ~~l~~l~~lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
+.=+.+ .|++.+.+ +.+..|.++++.+++.
T Consensus 86 ~~~~~~-vfll~d~q-i~~~~fLe~in~LL~s 115 (268)
T PF12780_consen 86 IKGKPT-VFLLTDSQ-IVDESFLEDINSLLSS 115 (268)
T ss_dssp CS-S-E-EEEEECCC-SSSCHHHHHHHHHHHC
T ss_pred ccCCCe-EEEecCcc-cchHhHHHHHHHHHhC
Confidence 332334 44444444 4567788999988864
No 463
>PHA00012 I assembly protein
Probab=22.26 E-value=44 Score=24.48 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.0
Q ss_pred CCccEEEEchhhhhhhc
Q psy18035 75 SSIQYVVFDEADRLFEM 91 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~ 91 (104)
.+=..+|+|||+..+..
T Consensus 80 p~gsLlVlDEaq~~fp~ 96 (361)
T PHA00012 80 SKNGLLVLDECGTWFNS 96 (361)
T ss_pred CCCcEEEEECcccccCC
Confidence 55669999999999854
No 464
>KOG1969|consensus
Probab=21.93 E-value=1e+02 Score=25.25 Aligned_cols=27 Identities=22% Similarity=-0.053 Sum_probs=19.9
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
++-.+||+||.|--. .++.+-+.++++
T Consensus 386 srP~CLViDEIDGa~-~~~Vdvilslv~ 412 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAP-RAAVDVILSLVK 412 (877)
T ss_pred CCcceEEEecccCCc-HHHHHHHHHHHH
Confidence 677899999999655 456666666665
No 465
>KOG0924|consensus
Probab=21.87 E-value=93 Score=25.44 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=22.6
Q ss_pred cEEEeCcHHHH-HHHHhCCCCCCCccEEEEchhhhh
Q psy18035 54 DIVVATPGRFL-HIVVEMELKLSSIQYVVFDEADRL 88 (104)
Q Consensus 54 ~IlV~TP~~l~-~l~~~~~~~l~~l~~lVlDEaD~l 88 (104)
.|=..|-|-|+ +.+..+ .+..-..+|+||||.=
T Consensus 447 ~IkymTDGiLLrEsL~d~--~L~kYSviImDEAHER 480 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDR--DLDKYSVIIMDEAHER 480 (1042)
T ss_pred eEEEeccchHHHHHhhhh--hhhheeEEEechhhhc
Confidence 45566878777 444433 3677889999999963
No 466
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=21.76 E-value=2.4e+02 Score=19.36 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=18.3
Q ss_pred CCceEEEEEcCccHHHHHHH-hcCCCc-EEEeC
Q psy18035 29 TKLQSTCLLGGDSMDNQFAR-LHASPD-IVVAT 59 (104)
Q Consensus 29 ~~~~~~~~~g~~~~~~~~~~-l~~~~~-IlV~T 59 (104)
.+.....+-||....++.+. +..++| ++|||
T Consensus 182 ~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 182 LDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred cCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 33423445667777777776 556654 55666
No 467
>PRK08116 hypothetical protein; Validated
Probab=21.70 E-value=2.8e+02 Score=19.13 Aligned_cols=37 Identities=8% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCCcEEEeCcHHHHHHHHhC-----------CC-CCCCccEEEEchhhh
Q psy18035 51 ASPDIVVATPGRFLHIVVEM-----------EL-KLSSIQYVVFDEADR 87 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~~~-----------~~-~l~~l~~lVlDEaD~ 87 (104)
.+..++..|...+...+... .+ .+.+.++|||||.+.
T Consensus 141 ~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 141 KGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred cCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence 35566666655555444321 01 267889999999854
No 468
>PRK08181 transposase; Validated
Probab=21.64 E-value=1.4e+02 Score=20.81 Aligned_cols=53 Identities=8% Similarity=0.071 Sum_probs=31.0
Q ss_pred cCCCcEEEeCcHHHHHHHHhC----CC-----CCCCccEEEEchhhhhhhcCc-HHHHHhhhh
Q psy18035 50 HASPDIVVATPGRFLHIVVEM----EL-----KLSSIQYVVFDEADRLFEMGF-DVEQQSPCD 102 (104)
Q Consensus 50 ~~~~~IlV~TP~~l~~l~~~~----~~-----~l~~l~~lVlDEaD~ll~~gf-~~~i~~i~~ 102 (104)
..+..++..|-..+...+... .. .+.+.+.+||||.+..-...+ ...+..|++
T Consensus 132 ~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin 194 (269)
T PRK08181 132 ENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELIS 194 (269)
T ss_pred HcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHH
Confidence 456677777766666544321 11 256789999999987643322 234444443
No 469
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=21.19 E-value=4.9e+02 Score=21.68 Aligned_cols=68 Identities=24% Similarity=0.452 Sum_probs=42.9
Q ss_pred eEEEehh---HHHHHHHHHHHHhcc-CCceEEEEEcCccHHHHHHHhcCC---Cc-EEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 7 NYLISFP---IVQQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLHAS---PD-IVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~~-~~~~~~~~~g~~~~~~~~~~l~~~---~~-IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
-.||+-| -..+..+.+++ .+. ..+.+..+||..+..+|.+..... .. ||++|. +-...+....++
T Consensus 261 dILvFLpG~~EI~~~~~~L~~-~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATN------IAETSLTI~gIr 333 (845)
T COG1643 261 SILVFLPGQREIERTAEWLEK-AELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATN------IAETSLTIPGIR 333 (845)
T ss_pred CEEEECCcHHHHHHHHHHHHh-ccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEcc------ccccceeeCCeE
Confidence 4677788 44444444444 111 347888899999999998877643 23 999994 222334456666
Q ss_pred EEE
Q psy18035 79 YVV 81 (104)
Q Consensus 79 ~lV 81 (104)
++|
T Consensus 334 ~VI 336 (845)
T COG1643 334 YVI 336 (845)
T ss_pred EEe
Confidence 643
No 470
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=21.15 E-value=2e+02 Score=18.38 Aligned_cols=7 Identities=14% Similarity=0.553 Sum_probs=3.4
Q ss_pred EEEEcCc
Q psy18035 34 TCLLGGD 40 (104)
Q Consensus 34 ~~~~g~~ 40 (104)
.+.+|+.
T Consensus 151 ~l~igD~ 157 (205)
T TIGR01454 151 AVMVGDA 157 (205)
T ss_pred eEEEcCC
Confidence 3445554
No 471
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=21.06 E-value=52 Score=23.96 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.2
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
..-+.+++||+|.|-.
T Consensus 140 ~~~kVviIDead~m~~ 155 (365)
T PRK07471 140 GGWRVVIVDTADEMNA 155 (365)
T ss_pred CCCEEEEEechHhcCH
Confidence 5678999999998853
No 472
>PRK13342 recombination factor protein RarA; Reviewed
Probab=20.83 E-value=54 Score=24.08 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=12.1
Q ss_pred CccEEEEchhhhhhh
Q psy18035 76 SIQYVVFDEADRLFE 90 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~ 90 (104)
.-..+++||+|++-.
T Consensus 92 ~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 92 RRTILFIDEIHRFNK 106 (413)
T ss_pred CceEEEEechhhhCH
Confidence 556899999999853
No 473
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.71 E-value=2.9e+02 Score=22.61 Aligned_cols=10 Identities=20% Similarity=0.219 Sum_probs=6.6
Q ss_pred cEEEeCcHHH
Q psy18035 54 DIVVATPGRF 63 (104)
Q Consensus 54 ~IlV~TP~~l 63 (104)
-|+|=||||.
T Consensus 266 ~VLIDTAGRs 275 (767)
T PRK14723 266 LVLIDTVGMS 275 (767)
T ss_pred EEEEeCCCCC
Confidence 4667788853
No 474
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=20.43 E-value=2.1e+02 Score=17.24 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=26.0
Q ss_pred Eehh-HHHHHHHHHHH--HhccCCceEEEEEcCccHHH---HHHHhcCCCcEEEeCcHH
Q psy18035 10 ISFP-IVQQTFKFVKE--LGKFTKLQSTCLLGGDSMDN---QFARLHASPDIVVATPGR 62 (104)
Q Consensus 10 il~P-La~Qi~~~~~~--l~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~IlV~TP~~ 62 (104)
++.| +|..+...+-. +-+.++..+..-+. .+... .++.+....||+|-+|..
T Consensus 33 ii~p~~AD~i~~~ilg~~lr~~~k~A~lv~v~-~~~~~aI~~lrkIHPPAHIiVis~~~ 90 (107)
T PF04009_consen 33 IIPPEYADWILEKILGEPLRKKCKAAALVKVE-EDATKAIDRLRKIHPPAHIIVISPRH 90 (107)
T ss_pred ccChHHHHHHHHHHhCCccccccchheEEEec-CCchhHHHHHhhcCCCceEEEECCCc
Confidence 3456 77766553321 12222333333332 23333 344444568999999865
No 475
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=20.42 E-value=63 Score=22.82 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=12.8
Q ss_pred CCCccEEEEchhhhhh
Q psy18035 74 LSSIQYVVFDEADRLF 89 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll 89 (104)
+..-..+++||+|.+-
T Consensus 100 l~~~~vl~IDEi~~l~ 115 (328)
T PRK00080 100 LEEGDVLFIDEIHRLS 115 (328)
T ss_pred cccCCEEEEecHhhcc
Confidence 3456799999999884
No 476
>CHL00095 clpC Clp protease ATP binding subunit
Probab=20.35 E-value=87 Score=25.39 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCCCCCccEEEEchhhhh
Q psy18035 61 GRFLHIVVEMELKLSSIQYVVFDEADRL 88 (104)
Q Consensus 61 ~~l~~l~~~~~~~l~~l~~lVlDEaD~l 88 (104)
|.+.+.++.. .-+.+++||+|++
T Consensus 601 ~~l~~~~~~~-----p~~VvllDeieka 623 (821)
T CHL00095 601 GQLTEAVRKK-----PYTVVLFDEIEKA 623 (821)
T ss_pred chHHHHHHhC-----CCeEEEECChhhC
Confidence 3454554433 2368999999987
Done!