Query psy18035
Match_columns 104
No_of_seqs 210 out of 1118
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 20:48:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 99.9 9.8E-23 3.3E-27 136.0 11.1 100 4-103 101-203 (242)
2 2db3_A ATP-dependent RNA helic 99.9 1.4E-22 4.9E-27 145.1 11.3 100 4-103 128-230 (434)
3 1wrb_A DJVLGB; RNA helicase, D 99.9 1.2E-21 4E-26 131.3 11.7 99 4-102 99-200 (253)
4 3ly5_A ATP-dependent RNA helic 99.9 2.9E-21 1E-25 130.6 11.2 99 4-102 125-227 (262)
5 3iuy_A Probable ATP-dependent 99.9 3.2E-21 1.1E-25 127.3 10.2 98 4-102 93-193 (228)
6 3ber_A Probable ATP-dependent 99.8 1.3E-20 4.6E-25 126.5 11.9 100 4-103 110-213 (249)
7 1vec_A ATP-dependent RNA helic 99.8 2.5E-20 8.5E-25 121.0 12.3 99 4-102 70-172 (206)
8 3bor_A Human initiation factor 99.8 1.2E-20 4.1E-25 125.6 10.4 99 4-102 97-199 (237)
9 1q0u_A Bstdead; DEAD protein, 99.8 7.8E-21 2.7E-25 124.9 8.9 100 4-103 71-177 (219)
10 2oxc_A Probable ATP-dependent 99.8 4.3E-20 1.5E-24 122.3 11.3 98 4-102 91-193 (230)
11 3fmo_B ATP-dependent RNA helic 99.8 9.7E-21 3.3E-25 130.4 7.7 98 3-103 160-263 (300)
12 2i4i_A ATP-dependent RNA helic 99.8 7.5E-20 2.6E-24 128.9 11.8 98 5-102 101-201 (417)
13 2pl3_A Probable ATP-dependent 99.8 1.3E-19 4.6E-24 120.1 11.2 99 4-103 96-198 (236)
14 2gxq_A Heat resistant RNA depe 99.8 1.5E-19 5.1E-24 117.3 10.7 98 4-103 71-171 (207)
15 1qde_A EIF4A, translation init 99.8 1.6E-19 5.3E-24 118.7 10.6 99 3-102 80-181 (224)
16 1t6n_A Probable ATP-dependent 99.8 3E-19 1E-23 117.2 10.3 99 4-102 81-185 (220)
17 2j0s_A ATP-dependent RNA helic 99.8 5.5E-19 1.9E-23 124.6 11.7 100 3-102 103-205 (410)
18 3dkp_A Probable ATP-dependent 99.8 2E-19 6.7E-24 119.8 6.5 99 4-102 97-204 (245)
19 3eiq_A Eukaryotic initiation f 99.8 1E-17 3.5E-22 117.8 12.0 100 4-103 107-210 (414)
20 2fsf_A Preprotein translocase 99.8 1.1E-18 3.9E-23 132.8 7.2 97 4-102 114-236 (853)
21 3sqw_A ATP-dependent RNA helic 99.7 7.9E-18 2.7E-22 124.1 9.2 99 4-102 94-201 (579)
22 1tf5_A Preprotein translocase 99.7 9.3E-18 3.2E-22 127.9 9.6 98 4-103 123-246 (844)
23 1s2m_A Putative ATP-dependent 99.7 2.5E-17 8.4E-22 115.7 11.0 99 4-102 88-189 (400)
24 3oiy_A Reverse gyrase helicase 99.7 1.2E-17 4.1E-22 118.3 8.0 96 4-102 63-177 (414)
25 1fuu_A Yeast initiation factor 99.7 6.3E-17 2.2E-21 113.0 11.4 98 4-102 88-188 (394)
26 2z0m_A 337AA long hypothetical 99.7 7.2E-17 2.5E-21 110.5 11.0 97 5-102 56-155 (337)
27 3i5x_A ATP-dependent RNA helic 99.7 2.6E-17 8.8E-22 120.5 9.2 99 4-102 145-252 (563)
28 1hv8_A Putative ATP-dependent 99.7 1.9E-16 6.6E-21 109.4 12.2 98 4-102 73-173 (367)
29 1xti_A Probable ATP-dependent 99.7 1.7E-16 5.8E-21 110.8 10.5 99 4-102 75-179 (391)
30 4ddu_A Reverse gyrase; topoiso 99.7 4E-17 1.4E-21 128.0 7.2 96 4-102 120-234 (1104)
31 1nkt_A Preprotein translocase 99.7 8.1E-17 2.8E-21 123.2 8.1 98 4-103 151-274 (922)
32 4a2p_A RIG-I, retinoic acid in 99.7 1E-16 3.5E-21 116.3 7.5 92 5-96 55-150 (556)
33 3tbk_A RIG-I helicase domain; 99.7 2.2E-16 7.4E-21 114.3 7.4 88 5-92 52-143 (555)
34 1gku_B Reverse gyrase, TOP-RG; 99.6 3.5E-16 1.2E-20 122.2 7.5 91 4-101 98-198 (1054)
35 3fmp_B ATP-dependent RNA helic 99.6 8.5E-16 2.9E-20 110.7 7.6 97 3-102 160-262 (479)
36 3pey_A ATP-dependent RNA helic 99.6 2.8E-15 9.4E-20 104.4 9.1 95 4-102 74-172 (395)
37 4a2q_A RIG-I, retinoic acid in 99.6 2.1E-15 7.2E-20 114.8 8.2 89 5-93 296-388 (797)
38 2ipc_A Preprotein translocase 99.6 2.5E-15 8.6E-20 115.3 8.1 88 4-93 119-220 (997)
39 3fht_A ATP-dependent RNA helic 99.6 3.7E-15 1.3E-19 104.5 8.2 97 3-102 93-195 (412)
40 3b6e_A Interferon-induced heli 99.6 1.4E-15 4.8E-20 98.7 4.9 94 4-98 81-184 (216)
41 2ykg_A Probable ATP-dependent 99.6 4.9E-15 1.7E-19 110.6 7.7 87 5-91 61-151 (696)
42 4a2w_A RIG-I, retinoic acid in 99.5 9.6E-15 3.3E-19 113.0 6.8 88 5-92 296-387 (936)
43 3fho_A ATP-dependent RNA helic 99.5 3.3E-14 1.1E-18 103.6 8.5 95 4-102 188-286 (508)
44 3l9o_A ATP-dependent RNA helic 99.5 2.8E-14 9.6E-19 112.0 6.2 88 4-102 226-316 (1108)
45 1wp9_A ATP-dependent RNA helic 99.5 6.3E-13 2.2E-17 94.0 10.4 93 4-97 51-146 (494)
46 4gl2_A Interferon-induced heli 99.4 4.5E-14 1.5E-18 105.5 2.5 87 5-92 56-152 (699)
47 2zj8_A DNA helicase, putative 99.4 3.5E-13 1.2E-17 101.6 6.8 94 5-102 68-164 (720)
48 2p6r_A Afuhel308 helicase; pro 99.4 2.8E-13 9.5E-18 101.8 6.2 94 5-102 68-164 (702)
49 2xgj_A ATP-dependent RNA helic 99.4 7.1E-13 2.4E-17 103.4 8.3 87 4-101 128-217 (1010)
50 2va8_A SSO2462, SKI2-type heli 99.4 4E-13 1.4E-17 101.1 6.1 95 4-102 74-171 (715)
51 1gm5_A RECG; helicase, replica 99.4 1.6E-12 5.4E-17 99.2 8.4 79 5-88 417-502 (780)
52 4a4z_A Antiviral helicase SKI2 99.4 5.2E-13 1.8E-17 104.0 5.3 89 4-101 81-172 (997)
53 3o8b_A HCV NS3 protease/helica 99.3 1.5E-12 5.1E-17 97.9 5.7 84 5-102 257-343 (666)
54 3llm_A ATP-dependent RNA helic 99.3 2.3E-12 7.7E-17 85.5 5.6 90 5-102 109-204 (235)
55 2v1x_A ATP-dependent DNA helic 99.3 7.2E-12 2.5E-16 93.1 7.8 90 5-99 84-190 (591)
56 4f92_B U5 small nuclear ribonu 99.3 1.4E-11 4.9E-16 100.1 8.7 93 4-100 971-1069(1724)
57 4f92_B U5 small nuclear ribonu 99.2 1.6E-11 5.3E-16 99.9 7.5 92 4-99 133-229 (1724)
58 1rif_A DAR protein, DNA helica 99.2 4.8E-12 1.6E-16 85.8 3.5 82 6-93 158-242 (282)
59 1oyw_A RECQ helicase, ATP-depe 99.2 3.1E-11 1.1E-15 88.4 7.0 91 6-100 66-165 (523)
60 2oca_A DAR protein, ATP-depend 99.2 1.7E-11 5.9E-16 88.7 5.3 82 5-92 157-241 (510)
61 2eyq_A TRCF, transcription-rep 99.2 1.5E-10 5.1E-15 91.4 10.2 80 4-88 651-737 (1151)
62 2fwr_A DNA repair protein RAD2 99.0 7.8E-10 2.7E-14 79.4 5.7 78 5-98 133-214 (472)
63 2w00_A HSDR, R.ECOR124I; ATP-b 98.9 4.2E-10 1.4E-14 88.1 3.8 88 5-98 330-423 (1038)
64 3crv_A XPD/RAD3 related DNA he 98.9 2.4E-09 8.2E-14 78.8 7.5 86 5-90 47-187 (551)
65 2fz4_A DNA repair protein RAD2 98.8 5.3E-09 1.8E-13 69.5 5.2 76 5-96 133-212 (237)
66 3rc3_A ATP-dependent RNA helic 98.8 1.2E-09 4E-14 82.5 1.8 83 6-102 180-265 (677)
67 2jlq_A Serine protease subunit 98.8 8.7E-09 3E-13 74.1 5.6 78 4-94 47-127 (451)
68 3h1t_A Type I site-specific re 98.7 1.3E-09 4.3E-14 80.5 0.2 76 4-91 234-317 (590)
69 1yks_A Genome polyprotein [con 98.7 3.6E-10 1.2E-14 81.2 -2.9 65 4-88 36-111 (440)
70 2v6i_A RNA helicase; membrane, 98.7 2.5E-08 8.7E-13 71.4 6.2 82 4-98 30-114 (431)
71 2whx_A Serine protease/ntpase/ 98.6 7.3E-08 2.5E-12 72.0 5.2 86 4-102 214-302 (618)
72 1z63_A Helicase of the SNF2/RA 98.5 4.8E-08 1.6E-12 70.5 3.3 78 5-92 86-165 (500)
73 2z83_A Helicase/nucleoside tri 98.5 1.5E-07 5.3E-12 67.8 5.7 83 4-98 49-139 (459)
74 2wv9_A Flavivirin protease NS2 98.5 4.1E-09 1.4E-13 79.5 -3.5 65 4-88 269-344 (673)
75 2xau_A PRE-mRNA-splicing facto 98.4 1E-06 3.4E-11 67.4 7.3 81 5-91 140-224 (773)
76 1z3i_X Similar to RAD54-like; 98.3 3.2E-06 1.1E-10 63.4 8.6 83 6-91 115-207 (644)
77 2vl7_A XPD; helicase, unknown 98.1 1.4E-06 4.7E-11 64.1 3.6 39 51-89 143-188 (540)
78 3mwy_W Chromo domain-containin 98.1 5.6E-06 1.9E-10 63.4 6.9 81 6-90 287-381 (800)
79 3dmq_A RNA polymerase-associat 97.9 2.1E-06 7.2E-11 67.0 1.1 83 6-92 201-289 (968)
80 3jux_A Protein translocase sub 97.7 0.00012 4E-09 56.2 7.4 84 4-89 115-258 (822)
81 2d7d_A Uvrabc system protein B 96.3 0.00063 2.2E-08 51.2 0.1 42 37-90 304-345 (661)
82 1w36_D RECD, exodeoxyribonucle 96.2 0.0018 6E-08 48.4 2.0 86 4-102 195-284 (608)
83 1c4o_A DNA nucleotide excision 95.3 0.0038 1.3E-07 47.1 0.6 42 37-90 298-339 (664)
84 2hjv_A ATP-dependent RNA helic 95.2 0.21 7.2E-06 30.5 8.4 69 5-83 35-110 (163)
85 2p6n_A ATP-dependent RNA helic 95.2 0.24 8.1E-06 31.3 8.8 68 5-82 54-128 (191)
86 1fuk_A Eukaryotic initiation f 94.6 0.37 1.3E-05 29.4 8.2 69 5-83 30-105 (165)
87 3eaq_A Heat resistant RNA depe 94.3 0.41 1.4E-05 30.6 8.3 68 5-82 31-105 (212)
88 2rb4_A ATP-dependent RNA helic 94.1 0.33 1.1E-05 29.9 7.4 68 5-82 34-108 (175)
89 1t5i_A C_terminal domain of A 93.7 0.36 1.2E-05 29.8 6.9 68 5-82 31-105 (172)
90 2i4i_A ATP-dependent RNA helic 92.9 0.94 3.2E-05 31.2 8.7 69 4-82 275-350 (417)
91 3fht_A ATP-dependent RNA helic 92.8 0.83 2.8E-05 31.3 8.3 68 5-82 266-340 (412)
92 2jgn_A DBX, DDX3, ATP-dependen 92.4 0.42 1.4E-05 29.9 5.9 68 5-82 46-120 (185)
93 2eyq_A TRCF, transcription-rep 92.4 0.52 1.8E-05 37.8 7.5 76 4-87 811-893 (1151)
94 2d7d_A Uvrabc system protein B 92.3 0.62 2.1E-05 35.1 7.5 75 4-88 444-525 (661)
95 3pey_A ATP-dependent RNA helic 91.9 1.2 4.3E-05 30.1 8.2 72 5-86 243-321 (395)
96 1c4o_A DNA nucleotide excision 91.6 1.1 3.7E-05 33.8 8.1 75 4-88 438-519 (664)
97 1hv8_A Putative ATP-dependent 91.3 0.94 3.2E-05 30.4 7.0 70 4-83 237-313 (367)
98 1xti_A Probable ATP-dependent 91.1 1.5 5E-05 29.9 8.0 70 5-84 250-326 (391)
99 3i5x_A ATP-dependent RNA helic 91.0 2 6.9E-05 31.1 8.9 74 4-84 338-418 (563)
100 1s2m_A Putative ATP-dependent 90.9 1.8 6E-05 29.7 8.2 68 5-82 258-332 (400)
101 3sqw_A ATP-dependent RNA helic 90.8 2.2 7.5E-05 31.2 9.0 74 4-84 287-367 (579)
102 3i32_A Heat resistant RNA depe 90.3 1.3 4.6E-05 30.0 7.0 68 5-82 28-102 (300)
103 2j0s_A ATP-dependent RNA helic 90.2 2.1 7.3E-05 29.4 8.2 67 6-82 277-350 (410)
104 1oyw_A RECQ helicase, ATP-depe 89.8 1.7 6E-05 31.6 7.7 68 5-82 236-310 (523)
105 2db3_A ATP-dependent RNA helic 89.8 2.4 8.2E-05 29.9 8.3 66 7-82 302-374 (434)
106 2v1x_A ATP-dependent DNA helic 89.7 1.9 6.5E-05 32.0 7.9 69 4-82 266-341 (591)
107 1wp9_A ATP-dependent RNA helic 88.6 1.4 4.7E-05 30.5 6.3 71 4-84 360-445 (494)
108 2xau_A PRE-mRNA-splicing facto 88.5 2.3 7.8E-05 32.7 7.8 72 5-82 303-393 (773)
109 1yks_A Genome polyprotein [con 87.2 1.4 4.8E-05 31.3 5.7 65 5-81 177-245 (440)
110 2yjt_D ATP-dependent RNA helic 86.8 0.12 4.2E-06 31.8 0.0 68 5-82 30-104 (170)
111 4a15_A XPD helicase, ATP-depen 86.4 0.33 1.1E-05 36.3 2.1 36 5-40 51-89 (620)
112 3lhi_A Putative 6-phosphogluco 85.9 1.2 4.1E-05 29.2 4.4 26 59-84 45-70 (232)
113 2v6i_A RNA helicase; membrane, 85.7 1.4 4.6E-05 31.3 4.9 50 5-59 171-224 (431)
114 3lwd_A 6-phosphogluconolactona 85.4 2.1 7.3E-05 27.9 5.4 27 59-85 44-70 (226)
115 2oca_A DAR protein, ATP-depend 85.3 4.3 0.00015 28.9 7.4 51 31-86 372-426 (510)
116 2wv9_A Flavivirin protease NS2 84.4 4.8 0.00016 30.5 7.5 65 5-81 410-478 (673)
117 3tbk_A RIG-I helicase domain; 84.0 2.1 7.1E-05 30.5 5.3 72 5-82 389-476 (555)
118 3nwp_A 6-phosphogluconolactona 83.4 1.8 6E-05 28.4 4.3 26 59-84 48-73 (233)
119 2i3b_A HCR-ntpase, human cance 83.3 0.4 1.4E-05 30.4 1.1 29 74-102 103-133 (189)
120 2z0m_A 337AA long hypothetical 81.7 4 0.00014 26.9 5.7 67 4-84 219-292 (337)
121 4gl2_A Interferon-induced heli 81.6 0.96 3.3E-05 33.7 2.8 71 5-81 400-487 (699)
122 2ykg_A Probable ATP-dependent 81.3 1.4 4.8E-05 32.8 3.6 73 4-82 397-485 (696)
123 3rc3_A ATP-dependent RNA helic 81.1 8 0.00027 29.3 7.6 69 9-88 324-401 (677)
124 4a15_A XPD helicase, ATP-depen 79.9 1.4 4.8E-05 32.9 3.2 41 50-91 173-219 (620)
125 2jlq_A Serine protease subunit 78.8 6.1 0.00021 28.0 6.1 64 6-81 189-256 (451)
126 3eiq_A Eukaryotic initiation f 76.5 2.3 7.9E-05 29.1 3.3 68 5-82 280-354 (414)
127 3tx2_A Probable 6-phosphogluco 76.0 4 0.00014 27.0 4.2 27 59-85 50-78 (251)
128 3ico_A 6PGL, 6-phosphogluconol 75.8 2.2 7.4E-05 28.6 2.9 27 59-85 66-94 (268)
129 3dmq_A RNA polymerase-associat 75.8 6.2 0.00021 31.1 5.8 74 4-86 502-584 (968)
130 2va8_A SSO2462, SKI2-type heli 75.4 14 0.00049 27.6 7.6 45 32-82 314-362 (715)
131 2gno_A DNA polymerase III, gam 73.5 18 0.00062 24.4 7.5 71 21-91 8-97 (305)
132 3oc6_A 6-phosphogluconolactona 72.7 4.1 0.00014 26.9 3.6 27 59-85 50-78 (248)
133 4a2p_A RIG-I, retinoic acid in 72.5 3.2 0.00011 29.6 3.3 73 4-82 389-477 (556)
134 3bos_A Putative DNA replicatio 72.3 7.8 0.00027 24.1 4.9 75 17-91 38-119 (242)
135 3s99_A Basic membrane lipoprot 72.1 11 0.00037 26.2 5.8 69 16-84 44-118 (356)
136 2z4s_A Chromosomal replication 71.3 17 0.00057 25.8 6.8 71 21-91 119-209 (440)
137 3oiy_A Reverse gyrase helicase 69.6 8.4 0.00029 26.5 4.9 64 6-82 253-326 (414)
138 1vl1_A 6PGL, 6-phosphogluconol 69.6 7.4 0.00025 25.4 4.3 26 59-84 56-81 (232)
139 1jbk_A CLPB protein; beta barr 69.5 4.6 0.00016 24.0 3.2 14 77-90 116-129 (195)
140 4ag6_A VIRB4 ATPase, type IV s 69.1 2.1 7.2E-05 29.7 1.7 28 75-102 261-291 (392)
141 3fmp_B ATP-dependent RNA helic 68.8 1 3.5E-05 32.0 0.0 67 5-81 333-406 (479)
142 3eb9_A 6-phosphogluconolactona 68.6 5.6 0.00019 26.5 3.7 15 71-85 62-77 (266)
143 4a2q_A RIG-I, retinoic acid in 68.5 5.8 0.0002 30.3 4.1 74 4-83 630-719 (797)
144 2zj8_A DNA helicase, putative 68.1 18 0.0006 27.2 6.6 44 32-81 296-343 (720)
145 4a2w_A RIG-I, retinoic acid in 68.0 8.2 0.00028 30.2 4.9 74 4-83 630-719 (936)
146 2r2a_A Uncharacterized protein 68.0 2.4 8.1E-05 27.0 1.6 14 77-90 88-101 (199)
147 2orw_A Thymidine kinase; TMTK, 67.7 3.8 0.00013 25.5 2.6 27 75-102 75-101 (184)
148 1gm5_A RECG; helicase, replica 67.3 1.6 5.3E-05 33.7 0.8 78 4-87 577-668 (780)
149 2p6r_A Afuhel308 helicase; pro 66.8 12 0.0004 28.1 5.4 44 32-81 298-345 (702)
150 2ri0_A Glucosamine-6-phosphate 66.2 22 0.00076 22.7 6.1 26 59-84 39-64 (234)
151 1y89_A DEVB protein; structura 66.1 10 0.00034 24.7 4.4 13 72-84 57-69 (238)
152 3h1t_A Type I site-specific re 65.5 32 0.0011 25.0 7.4 75 5-85 439-526 (590)
153 2whx_A Serine protease/ntpase/ 65.1 11 0.00038 28.1 5.0 63 6-80 356-422 (618)
154 3o8b_A HCV NS3 protease/helica 64.9 7.8 0.00027 29.5 4.1 64 4-81 395-461 (666)
155 3fho_A ATP-dependent RNA helic 64.5 2.5 8.6E-05 30.5 1.4 68 5-82 357-431 (508)
156 3euj_A Chromosome partition pr 62.4 3.2 0.00011 30.3 1.6 14 75-88 413-426 (483)
157 2w00_A HSDR, R.ECOR124I; ATP-b 59.6 67 0.0023 25.8 9.0 34 5-38 537-581 (1038)
158 2z83_A Helicase/nucleoside tri 57.4 6.8 0.00023 27.9 2.6 65 5-81 190-258 (459)
159 2p65_A Hypothetical protein PF 56.4 11 0.00036 22.4 3.0 13 77-89 116-128 (187)
160 2kjq_A DNAA-related protein; s 55.7 3.3 0.00011 24.8 0.6 26 75-101 82-107 (149)
161 1gku_B Reverse gyrase, TOP-RG; 55.3 19 0.00066 28.6 5.0 69 5-86 275-352 (1054)
162 2bkx_A Glucosamine-6-phosphate 54.5 38 0.0013 21.6 5.7 26 59-84 39-68 (242)
163 1tvm_A PTS system, galactitol- 51.5 32 0.0011 19.6 5.2 48 5-60 21-77 (113)
164 3hn6_A Glucosamine-6-phosphate 50.7 10 0.00034 25.7 2.4 26 59-84 65-94 (289)
165 4ddu_A Reverse gyrase; topoiso 50.2 23 0.00078 28.5 4.7 67 5-84 309-385 (1104)
166 1sxj_E Activator 1 40 kDa subu 49.2 5.4 0.00018 26.9 0.9 26 75-101 133-158 (354)
167 4gl0_A LMO0810 protein; struct 49.0 38 0.0013 22.4 5.1 51 21-72 26-79 (333)
168 3czc_A RMPB; alpha/beta sandwi 48.6 35 0.0012 19.2 5.2 49 6-61 19-76 (110)
169 1tue_A Replication protein E1; 46.0 4.5 0.00015 26.3 0.1 28 75-102 102-129 (212)
170 2q5c_A NTRC family transcripti 45.9 53 0.0018 20.6 6.7 58 6-68 5-66 (196)
171 4exk_A Maltose-binding peripla 44.9 69 0.0024 22.9 6.2 54 18-72 24-80 (487)
172 3h4m_A Proteasome-activating n 43.6 11 0.00039 24.4 1.8 12 78-89 112-123 (285)
173 2v1u_A Cell division control p 43.6 22 0.00074 23.9 3.3 16 76-91 130-145 (387)
174 2l8b_A Protein TRAI, DNA helic 42.9 12 0.00043 23.9 1.8 16 74-89 119-134 (189)
175 1a5t_A Delta prime, HOLB; zinc 42.6 9.1 0.00031 25.9 1.2 17 75-91 107-123 (334)
176 4b3n_A Maltose-binding peripla 42.1 53 0.0018 24.1 5.3 54 18-72 34-90 (602)
177 1fnn_A CDC6P, cell division co 41.9 10 0.00034 25.7 1.4 23 77-100 126-148 (389)
178 2hqb_A Transcriptional activat 41.6 72 0.0025 20.8 8.7 68 17-84 24-95 (296)
179 1ye8_A Protein THEP1, hypothet 41.4 14 0.00047 22.8 1.8 28 75-102 98-127 (178)
180 3css_A 6-phosphogluconolactona 41.1 40 0.0014 22.2 4.2 15 71-85 63-77 (267)
181 2gk6_A Regulator of nonsense t 40.4 22 0.00076 26.4 3.1 35 51-89 318-352 (624)
182 2fna_A Conserved hypothetical 40.2 25 0.00087 23.2 3.2 25 78-102 139-166 (357)
183 2chg_A Replication factor C sm 40.1 31 0.0011 20.8 3.4 16 75-90 101-116 (226)
184 2qen_A Walker-type ATPase; unk 39.8 15 0.0005 24.3 1.9 13 78-90 130-142 (350)
185 2qby_B CDC6 homolog 3, cell di 39.1 16 0.00056 24.6 2.1 14 79-92 136-149 (384)
186 1ofh_A ATP-dependent HSL prote 38.4 25 0.00085 22.9 2.9 15 77-91 117-131 (310)
187 1d2n_A N-ethylmaleimide-sensit 38.2 11 0.00038 24.4 1.1 16 75-90 123-138 (272)
188 1oef_A Apolipoprotein E; glyco 38.1 25 0.00086 14.6 2.0 16 11-26 3-18 (26)
189 4dxb_A RG13, maltose-binding p 37.5 68 0.0023 23.7 5.3 54 18-72 20-76 (637)
190 2l2q_A PTS system, cellobiose- 36.5 57 0.002 18.2 7.0 74 6-87 5-87 (109)
191 3syl_A Protein CBBX; photosynt 36.2 15 0.00052 24.1 1.5 13 78-90 132-144 (309)
192 4h1g_A Maltose binding protein 36.0 1.1E+02 0.0037 23.2 6.3 55 18-72 21-77 (715)
193 1njg_A DNA polymerase III subu 35.7 15 0.00051 22.5 1.3 14 76-89 126-139 (250)
194 3u61_B DNA polymerase accessor 34.8 13 0.00046 24.6 1.1 15 75-89 104-118 (324)
195 2qby_A CDC6 homolog 1, cell di 34.8 16 0.00056 24.4 1.5 15 77-91 129-143 (386)
196 3kta_B Chromosome segregation 34.3 15 0.00052 22.7 1.2 28 75-102 85-112 (173)
197 3co5_A Putative two-component 34.0 69 0.0024 18.4 4.2 72 16-89 14-88 (143)
198 3h75_A Periplasmic sugar-bindi 33.7 1E+02 0.0035 20.3 6.3 56 5-60 3-70 (350)
199 3m91_B Prokaryotic ubiquitin-l 33.3 5.7 0.00019 19.2 -0.7 18 81-98 19-36 (44)
200 1g5t_A COB(I)alamin adenosyltr 33.0 42 0.0014 21.4 3.1 19 75-93 119-137 (196)
201 2b8t_A Thymidine kinase; deoxy 32.6 88 0.003 20.1 4.7 34 54-88 68-101 (223)
202 1iqp_A RFCS; clamp loader, ext 32.1 35 0.0012 22.2 2.8 16 75-90 109-124 (327)
203 3r26_A Molybdate-binding perip 31.8 97 0.0033 19.5 6.3 58 14-72 17-76 (237)
204 3u42_A 50S ribosomal protein L 31.3 59 0.002 21.2 3.7 31 36-66 94-124 (229)
205 1xx6_A Thymidine kinase; NESG, 31.0 25 0.00085 22.0 1.8 13 76-88 81-93 (191)
206 2wjy_A Regulator of nonsense t 30.7 35 0.0012 26.4 2.9 34 52-89 495-528 (800)
207 3py7_A Maltose-binding peripla 30.1 1.5E+02 0.0051 21.1 6.1 55 18-72 21-77 (523)
208 2chq_A Replication factor C sm 30.1 55 0.0019 21.2 3.5 16 75-90 101-116 (319)
209 1sxj_C Activator 1 40 kDa subu 29.9 53 0.0018 22.0 3.4 16 75-90 109-124 (340)
210 3ec2_A DNA replication protein 29.8 16 0.00054 22.0 0.7 28 74-101 98-126 (180)
211 1ne7_A Glucosamine-6-phosphate 28.7 1.1E+02 0.0039 20.2 4.9 15 70-84 59-73 (289)
212 3uk6_A RUVB-like 2; hexameric 28.6 21 0.00073 24.0 1.3 12 78-89 191-202 (368)
213 4eqb_A Spermidine/putrescine A 28.1 1.3E+02 0.0043 19.7 5.1 51 22-72 25-77 (330)
214 2r62_A Cell division protease 28.0 23 0.0008 22.7 1.3 13 78-90 105-117 (268)
215 3b9p_A CG5977-PA, isoform A; A 27.8 25 0.00085 22.9 1.5 15 77-91 114-128 (297)
216 1l8q_A Chromosomal replication 27.5 28 0.00097 23.1 1.7 15 76-90 98-112 (324)
217 1sxj_B Activator 1 37 kDa subu 27.3 23 0.00079 23.1 1.2 15 76-90 107-121 (323)
218 3vkw_A Replicase large subunit 27.3 43 0.0015 24.2 2.7 22 77-99 235-256 (446)
219 1z5z_A Helicase of the SNF2/RA 27.3 1.3E+02 0.0045 19.6 6.0 70 5-83 112-190 (271)
220 3h3g_A Fusion protein of malto 27.0 1.7E+02 0.006 20.9 6.0 55 18-72 22-78 (539)
221 2c9o_A RUVB-like 1; hexameric 26.4 24 0.00082 25.0 1.2 12 78-89 297-308 (456)
222 3n94_A Fusion protein of malto 26.3 1.7E+02 0.0057 20.4 6.1 55 18-72 22-78 (475)
223 2pk8_A Uncharacterized protein 26.3 95 0.0032 17.6 3.9 34 52-85 35-77 (103)
224 2fqx_A Membrane lipoprotein TM 26.2 1.4E+02 0.0049 19.6 5.3 48 15-62 22-72 (318)
225 1sxj_A Activator 1 95 kDa subu 26.2 38 0.0013 24.4 2.3 26 76-101 148-175 (516)
226 3puk_A Syntaxin-binding protei 26.2 1.4E+02 0.0047 22.2 5.3 37 33-69 533-579 (592)
227 3e2i_A Thymidine kinase; Zn-bi 26.0 35 0.0012 22.2 1.9 26 75-101 100-125 (219)
228 4i1d_A ABC transporter substra 25.7 1.4E+02 0.0048 19.3 5.9 53 20-72 21-76 (324)
229 1w5s_A Origin recognition comp 25.6 47 0.0016 22.5 2.6 14 77-90 139-152 (412)
230 1sxj_D Activator 1 41 kDa subu 25.5 28 0.00094 23.2 1.4 16 75-90 132-147 (353)
231 1jr3_A DNA polymerase III subu 25.5 26 0.00088 23.5 1.2 17 75-91 118-134 (373)
232 3hjh_A Transcription-repair-co 25.4 1.6E+02 0.0054 21.3 5.4 21 7-27 41-64 (483)
233 3ob4_A Conglutin, maltose ABC 25.3 1.8E+02 0.0063 20.6 5.8 55 18-72 20-76 (500)
234 3mq9_A Bone marrow stromal ant 25.3 1.8E+02 0.0061 20.4 6.0 55 18-72 34-90 (471)
235 3iot_A Maltose-binding protein 24.9 1.7E+02 0.006 20.1 5.6 54 19-72 21-76 (449)
236 3e15_A Glucose-6-phosphate 1-d 24.0 23 0.00077 24.3 0.7 27 59-85 71-100 (312)
237 3l49_A ABC sugar (ribose) tran 23.8 1.4E+02 0.0049 18.8 6.8 58 3-60 3-69 (291)
238 1viz_A PCRB protein homolog; s 23.6 1.5E+02 0.0053 19.3 4.7 37 22-59 173-211 (240)
239 3pfi_A Holliday junction ATP-d 23.5 70 0.0024 21.2 3.1 27 59-89 93-119 (338)
240 1um8_A ATP-dependent CLP prote 23.4 36 0.0012 23.2 1.6 16 76-91 137-152 (376)
241 3o3u_N Maltose-binding peripla 23.1 2E+02 0.007 20.3 6.3 55 18-72 20-76 (581)
242 3mp6_A MBP, SGF29, maltose-bin 23.0 2.1E+02 0.0071 20.4 6.0 54 19-72 22-77 (522)
243 4b3f_X DNA-binding protein smu 23.0 22 0.00074 26.5 0.5 37 53-89 343-379 (646)
244 1vkr_A Mannitol-specific PTS s 22.8 74 0.0025 18.5 2.8 47 6-61 14-68 (125)
245 3gzg_A Molybdate-binding perip 22.7 1.6E+02 0.0054 18.9 6.3 57 14-72 33-92 (253)
246 1w4r_A Thymidine kinase; type 22.5 62 0.0021 20.6 2.5 25 75-101 90-114 (195)
247 3oai_A Maltose-binding peripla 22.4 2E+02 0.0068 19.9 6.1 54 19-72 21-76 (507)
248 3n70_A Transport activator; si 21.8 31 0.0011 20.0 1.0 12 78-89 78-89 (145)
249 1e9r_A Conjugal transfer prote 21.7 55 0.0019 22.8 2.4 16 77-92 280-295 (437)
250 2xzl_A ATP-dependent helicase 21.7 83 0.0028 24.3 3.5 34 51-89 497-530 (802)
251 3vfd_A Spastin; ATPase, microt 21.7 38 0.0013 23.3 1.5 13 78-90 209-221 (389)
252 3upu_A ATP-dependent DNA helic 21.6 43 0.0015 23.7 1.8 15 74-88 126-140 (459)
253 3f5f_A Maltose-binding peripla 21.5 2.5E+02 0.0085 20.7 6.0 54 19-72 21-76 (658)
254 3osq_A Maltose-binding peripla 21.2 2.6E+02 0.0087 21.0 6.0 55 18-72 56-112 (661)
255 1fs5_A Glucosamine-6-phosphate 21.1 62 0.0021 21.0 2.4 15 70-84 59-73 (266)
256 2qz4_A Paraplegin; AAA+, SPG7, 21.1 29 0.00099 22.0 0.8 14 77-90 99-112 (262)
257 3kts_A Glycerol uptake operon 21.0 66 0.0023 20.5 2.4 41 42-83 70-112 (192)
258 3nku_A DRRA, SIDM; posttransla 21.0 86 0.0029 19.1 2.8 21 52-72 150-170 (213)
259 1xnl_A ASLV/FP, membrane prote 20.9 29 0.001 14.9 0.5 22 5-26 5-28 (29)
260 3d8b_A Fidgetin-like protein 1 20.5 39 0.0013 23.0 1.3 14 77-90 177-190 (357)
261 2orv_A Thymidine kinase; TP4A 20.4 74 0.0025 20.9 2.6 15 75-89 89-103 (234)
262 3m9d_G Prokaryotic ubiquitin-l 20.2 14 0.00049 19.5 -0.7 19 81-99 43-61 (68)
263 1g8p_A Magnesium-chelatase 38 20.1 41 0.0014 22.3 1.4 14 77-90 145-158 (350)
264 3osr_A Maltose-binding peripla 20.0 2.8E+02 0.0096 20.8 6.1 53 20-72 58-112 (653)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.89 E-value=9.8e-23 Score=135.99 Aligned_cols=100 Identities=31% Similarity=0.528 Sum_probs=94.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++++++|++| |+.|+++.++++.+..++++..++||.+...+...+.++++|+|+||+++.+++..+...+++++++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~l 180 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 180 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEE
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEE
Confidence 5789999999 9999999999999999999999999999999999998899999999999999999998999999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhhc
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
|+||||.+++.||.+++..|++.
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTT
T ss_pred EEeCHHHHhhhCcHHHHHHHHHh
Confidence 99999999999999999998764
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.89 E-value=1.4e-22 Score=145.14 Aligned_cols=100 Identities=27% Similarity=0.442 Sum_probs=94.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.+|++||++| ||.|+++.+++++...++++..++||.+...+...+.++++|+|+|||++.+++.++.+.+++++++
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~l 207 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFV 207 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEE
T ss_pred CCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeE
Confidence 4789999999 9999999999999988999999999999999999999999999999999999999998999999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhhc
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
|+||||+|++.||.+++..|++.
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHC
T ss_pred EEccHhhhhccCcHHHHHHHHHh
Confidence 99999999999999999999763
No 3
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.87 E-value=1.2e-21 Score=131.28 Aligned_cols=99 Identities=28% Similarity=0.488 Sum_probs=93.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.++++||++| |+.|+++.++++....++++..++||.+...+...+..+++|+|+||+++.+++..+...+++++++
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~l 178 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYI 178 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEE
Confidence 3589999999 9999999999999888999999999999888888888899999999999999999988899999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||.+++.||.+++..|++
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~ 200 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIE 200 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHH
T ss_pred EEeCHHHHHhCchHHHHHHHHh
Confidence 9999999999999999999886
No 4
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=130.56 Aligned_cols=99 Identities=30% Similarity=0.476 Sum_probs=91.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC-CCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~-~~~l~~l~~ 79 (104)
++++++|++| ||.|+++.++++....+.++..++||.....+...+.++++|+|+||+++.+++... .+.++++++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 5789999999 999999999999999999999999999999888888888999999999999888765 478999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhh
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
+|+||||++++.||.+++..|++
T Consensus 205 lViDEah~l~~~~~~~~l~~i~~ 227 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQIIK 227 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHH
T ss_pred EEEcChHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999875
No 5
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=127.33 Aligned_cols=98 Identities=27% Similarity=0.495 Sum_probs=85.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++++++|++| ||.|+++.++++. ..++++..++||.+...+...+.++++|+|+||+++.+++..+...+++++++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~l 171 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYL 171 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEE
Confidence 6789999999 9999999999986 56788999999999888888888899999999999999999998899999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||++++.+|.+++..|++
T Consensus 172 ViDEah~~~~~~~~~~~~~i~~ 193 (228)
T 3iuy_A 172 VIDEADKMLDMEFEPQIRKILL 193 (228)
T ss_dssp EECCHHHHHHTTCHHHHHHHHH
T ss_pred EEECHHHHhccchHHHHHHHHH
Confidence 9999999999999999998875
No 6
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=126.51 Aligned_cols=100 Identities=29% Similarity=0.476 Sum_probs=91.7
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~-~~~~l~~l~~ 79 (104)
++++++|++| |+.|+++.++++.+..++++..++||.+...+...+.++++|+|+||+++.+++.. +.+.++++++
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~ 189 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKY 189 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCE
Confidence 4678999999 99999999999999889999999999998888888888999999999999998886 5678999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
+|+||||++++.+|.+++..|++.
T Consensus 190 lViDEah~l~~~~~~~~l~~i~~~ 213 (249)
T 3ber_A 190 LVMDEADRILNMDFETEVDKILKV 213 (249)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHS
T ss_pred EEEcChhhhhccChHHHHHHHHHh
Confidence 999999999999999999988753
No 7
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.85 E-value=2.5e-20 Score=121.04 Aligned_cols=99 Identities=25% Similarity=0.419 Sum_probs=91.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
++++++|++| |+.|+++.++++.+.. ++++...+|+.+..++...+..+++|+|+||+++.+.+.++...++++++
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 149 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQM 149 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCE
Confidence 4689999999 9999999999998876 78999999999998888888888999999999999999998888999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhh
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
+|+||||.+++.+|...+..+++
T Consensus 150 lViDEah~~~~~~~~~~l~~i~~ 172 (206)
T 1vec_A 150 IVLDEADKLLSQDFVQIMEDIIL 172 (206)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHH
T ss_pred EEEEChHHhHhhCcHHHHHHHHH
Confidence 99999999999999999988875
No 8
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.84 E-value=1.2e-20 Score=125.57 Aligned_cols=99 Identities=29% Similarity=0.481 Sum_probs=80.7
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
++++++|++| |+.|+++.++++++..++++...+||.+...+...+..+ ++|+|+||+++.+++..+.+.++++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 5689999999 999999999999988899999999999888887777766 999999999999999988888999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhh
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
+|+||||.+++.+|...+..|++
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~ 199 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQ 199 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHH
T ss_pred EEECCchHhhccCcHHHHHHHHH
Confidence 99999999999999999988875
No 9
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.84 E-value=7.8e-21 Score=124.91 Aligned_cols=100 Identities=28% Similarity=0.562 Sum_probs=90.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccC----CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~----~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++++++|++| |+.|+++.++++.+.. ++++..++||.+...+.+.+.++++|+|+||+++.+++.++...+++
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 150 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHT 150 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGG
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCc
Confidence 4689999999 9999999999998876 78899999999888777777778999999999999999998888999
Q ss_pred ccEEEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 77 IQYVVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 77 l~~lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
++++|+||||.+.+.+|..++..|++.
T Consensus 151 ~~~lViDEah~~~~~~~~~~l~~i~~~ 177 (219)
T 1q0u_A 151 AHILVVDEADLMLDMGFITDVDQIAAR 177 (219)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHT
T ss_pred ceEEEEcCchHHhhhChHHHHHHHHHh
Confidence 999999999999999999999988753
No 10
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.83 E-value=4.3e-20 Score=122.34 Aligned_cols=98 Identities=28% Similarity=0.430 Sum_probs=88.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
.+++++|++| |+.|+++.++++.... ++++..++||.+...+...+. +++|+|+||+++.++++.+.+.++++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 4689999999 9999999999998765 899999999998887766654 6999999999999999988888999999
Q ss_pred EEEchhhhhhhcC-cHHHHHhhhh
Q psy18035 80 VVFDEADRLFEMG-FDVEQQSPCD 102 (104)
Q Consensus 80 lVlDEaD~ll~~g-f~~~i~~i~~ 102 (104)
+|+||||++++.| |.+++..|++
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~ 193 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYS 193 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHH
T ss_pred EEeCCchHhhcCcchHHHHHHHHH
Confidence 9999999999998 9999988875
No 11
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.83 E-value=9.7e-21 Score=130.42 Aligned_cols=98 Identities=24% Similarity=0.325 Sum_probs=83.8
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCCCCCCc
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSI 77 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~-~~~~l~~l 77 (104)
.++|++||++| ||.|+++.++.+.++. ++++...+||....... ..+++|+|||||++.+++.+ +.++++++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 35789999999 9999999999998874 68888888887654332 45689999999999999966 67789999
Q ss_pred cEEEEchhhhhhh-cCcHHHHHhhhhc
Q psy18035 78 QYVVFDEADRLFE-MGFDVEQQSPCDT 103 (104)
Q Consensus 78 ~~lVlDEaD~ll~-~gf~~~i~~i~~~ 103 (104)
+++|+||||+|++ .||.+++..|++.
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~ 263 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRM 263 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTT
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHh
Confidence 9999999999998 6999999888753
No 12
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.83 E-value=7.5e-20 Score=128.95 Aligned_cols=98 Identities=24% Similarity=0.482 Sum_probs=92.8
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
+++++|++| |+.|+++.++++....++++..++||.+...+...+.++++|+|+||+++.+++..+.+.+++++++|
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iV 180 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 180 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred CccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEE
Confidence 478999999 99999999999998889999999999999999888988999999999999999999888999999999
Q ss_pred EchhhhhhhcCcHHHHHhhhh
Q psy18035 82 FDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 82 lDEaD~ll~~gf~~~i~~i~~ 102 (104)
+||||.+++.+|.+.+..+++
T Consensus 181 iDEah~~~~~~~~~~~~~i~~ 201 (417)
T 2i4i_A 181 LDEADRMLDMGFEPQIRRIVE 201 (417)
T ss_dssp ESSHHHHHHTTCHHHHHHHHT
T ss_pred EEChhHhhccCcHHHHHHHHH
Confidence 999999999999999999876
No 13
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=120.06 Aligned_cols=99 Identities=29% Similarity=0.578 Sum_probs=86.3
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC-CCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~-~~~l~~l~~ 79 (104)
++++++|++| |+.|+++.++++....++++..++||.+...+...+ .+++|+|+||+++.+++... .+.++++++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 4789999999 999999999999988889999999998877776665 47999999999999888765 577899999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
+|+||||++++.||.+.+..+++.
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHT
T ss_pred EEEeChHHHhcCCcHHHHHHHHHh
Confidence 999999999999999999988753
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.82 E-value=1.5e-19 Score=117.31 Aligned_cols=98 Identities=30% Similarity=0.419 Sum_probs=88.7
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++++++|++| |+.|+++.++++... +++..++||.+...+...+.++++|+|+||+++.+++..+.+.+++++++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~i 148 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVA 148 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEE
Confidence 5789999999 999999999998764 77888899998888878888889999999999999999988899999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhhc
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
|+||||.+++.+|.+.+..+++.
T Consensus 149 ViDEah~~~~~~~~~~~~~i~~~ 171 (207)
T 2gxq_A 149 VLDEADEMLSMGFEEEVEALLSA 171 (207)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHT
T ss_pred EEEChhHhhccchHHHHHHHHHh
Confidence 99999999999999999988753
No 15
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.81 E-value=1.6e-19 Score=118.70 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=81.9
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
.++++++|++| |+.|+++.++++....++++...+||.+...+...+.+ ++|+|+||+++.+++..+...++++++
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 158 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKM 158 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcE
Confidence 35689999999 99999999999998889999999999888777766654 999999999999999998888999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhh
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
+|+||||.+++.+|...+..+++
T Consensus 159 iViDEah~~~~~~~~~~l~~i~~ 181 (224)
T 1qde_A 159 FILDEADEMLSSGFKEQIYQIFT 181 (224)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHH
T ss_pred EEEcChhHHhhhhhHHHHHHHHH
Confidence 99999999999999999988875
No 16
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=3e-19 Score=117.17 Aligned_cols=99 Identities=25% Similarity=0.437 Sum_probs=88.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcC-CCcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~-~~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
++++++|++| |+.|+++.++++.+.. ++++..++||.+...+...+.+ .++|+|+||+++.++++.+.+.+++++
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 160 (220)
T 1t6n_A 81 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 160 (220)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCC
Confidence 3579999999 9999999999998776 7999999999998887777765 479999999999999999888899999
Q ss_pred EEEEchhhhhhh-cCcHHHHHhhhh
Q psy18035 79 YVVFDEADRLFE-MGFDVEQQSPCD 102 (104)
Q Consensus 79 ~lVlDEaD~ll~-~gf~~~i~~i~~ 102 (104)
++|+||||.+++ .+|...+..+++
T Consensus 161 ~lViDEah~~~~~~~~~~~~~~i~~ 185 (220)
T 1t6n_A 161 HFILDECDKMLEQLDMRRDVQEIFR 185 (220)
T ss_dssp EEEEESHHHHHSSHHHHHHHHHHHH
T ss_pred EEEEcCHHHHhcccCcHHHHHHHHH
Confidence 999999999997 589998888865
No 17
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.80 E-value=5.5e-19 Score=124.55 Aligned_cols=100 Identities=25% Similarity=0.450 Sum_probs=93.6
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
.+++++||++| |+.|+++.+++++...++++...+||.+...+...+..+++|+|+||+++.+++..+.+.++++++
T Consensus 103 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~ 182 (410)
T 2j0s_A 103 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKM 182 (410)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeE
Confidence 35789999999 999999999999999999999999999999998888888999999999999999998889999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhh
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
+|+||||.+++.+|.+.+..+++
T Consensus 183 vViDEah~~~~~~~~~~~~~i~~ 205 (410)
T 2j0s_A 183 LVLDEADEMLNKGFKEQIYDVYR 205 (410)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHT
T ss_pred EEEccHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999988865
No 18
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=119.82 Aligned_cols=99 Identities=24% Similarity=0.385 Sum_probs=82.4
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHH-HhcCCCcEEEeCcHHHHHHHHhC--CCCCCCc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA-RLHASPDIVVATPGRFLHIVVEM--ELKLSSI 77 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~-~l~~~~~IlV~TP~~l~~l~~~~--~~~l~~l 77 (104)
++++++|++| |+.|+++.++++.+..++++..+.|+........ ....+++|+|+||+++.+++..+ .+.++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 176 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASV 176 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccC
Confidence 5789999999 9999999999999988888888777654443322 23456899999999999999876 5779999
Q ss_pred cEEEEchhhhhhh---cCcHHHHHhhhh
Q psy18035 78 QYVVFDEADRLFE---MGFDVEQQSPCD 102 (104)
Q Consensus 78 ~~lVlDEaD~ll~---~gf~~~i~~i~~ 102 (104)
+++|+||||.+++ .+|.+++..++.
T Consensus 177 ~~lViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 177 EWLVVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp CEEEESSHHHHHHHC--CHHHHHHHHHH
T ss_pred cEEEEeChHHhcccccccHHHHHHHHHH
Confidence 9999999999998 589999988864
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=117.77 Aligned_cols=100 Identities=27% Similarity=0.458 Sum_probs=92.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhc-CCCcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
++++++|++| |+.|+++.++++.+..+.++...+||.+...+...+. .+++|+|+||+++.+++..+.+.++++++
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~ 186 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 186 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCE
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcE
Confidence 5789999999 9999999999999999999999999999888888777 56999999999999999999889999999
Q ss_pred EEEchhhhhhhcCcHHHHHhhhhc
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCDT 103 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~~ 103 (104)
+|+||||.+.+.+|...+..++..
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~ 210 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQK 210 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTT
T ss_pred EEEECHHHhhccCcHHHHHHHHHh
Confidence 999999999999999999888753
No 20
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.76 E-value=1.1e-18 Score=132.81 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=75.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH-HHHHHhCC------CC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEME------LK 73 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l-~~l~~~~~------~~ 73 (104)
.+++++|++| ||.|+++++..+.+++++++.+++||.+... +.+..++||+|||||++ .++++.+. +.
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~ 191 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERV 191 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCC
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhc
Confidence 4679999999 9999999999999999999999999998653 34445799999999999 68887653 66
Q ss_pred CCCccEEEEchhhhhh-hcC---------------cHHHHHhhhh
Q psy18035 74 LSSIQYVVFDEADRLF-EMG---------------FDVEQQSPCD 102 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll-~~g---------------f~~~i~~i~~ 102 (104)
+++++++|+||||.|| +.+ |.+++..|++
T Consensus 192 ~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~ 236 (853)
T 2fsf_A 192 QRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIP 236 (853)
T ss_dssp CCSCCEEEESCHHHHTTTTTTCEEEEEEC----------------
T ss_pred ccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHH
Confidence 8999999999999999 554 5667777664
No 21
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=7.9e-18 Score=124.11 Aligned_cols=99 Identities=28% Similarity=0.516 Sum_probs=86.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhc----cCCceEEEEEcCccHHHHHHHhcC-CCcEEEeCcHHHHHHHHhC-CCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGK----FTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEM-ELKL 74 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~----~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlV~TP~~l~~l~~~~-~~~l 74 (104)
.++++||++| ||.|+++.++++.. ...+.+...+||.....+...+.. +++|+|+||+++.+++... ...+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 3689999999 99999999999864 245778889999998888888754 6999999999999988765 4568
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
++++++|+||||.|++.||.+++..|+.
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~ 201 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISG 201 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHH
Confidence 9999999999999999999999988864
No 22
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.74 E-value=9.3e-18 Score=127.89 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=82.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM------ELK 73 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l-~~l~~~~------~~~ 73 (104)
.+++++|++| ||.|+.+++..+.+++++++.+++||.+...+.. ..++||++||||++ .++++.+ .+.
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~ 200 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMV 200 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhc
Confidence 4678999999 9999999999999999999999999998765433 34799999999999 5666543 366
Q ss_pred CCCccEEEEchhhhhh-hcC---------------cHHHHHhhhhc
Q psy18035 74 LSSIQYVVFDEADRLF-EMG---------------FDVEQQSPCDT 103 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll-~~g---------------f~~~i~~i~~~ 103 (104)
++.++++|+||||.|| |.+ |.+++..|++.
T Consensus 201 lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~ 246 (844)
T 1tf5_A 201 QRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRT 246 (844)
T ss_dssp CCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTT
T ss_pred ccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHh
Confidence 8999999999999999 775 67888888753
No 23
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.73 E-value=2.5e-17 Score=115.66 Aligned_cols=99 Identities=28% Similarity=0.463 Sum_probs=91.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++++++|++| |+.|+++.++++.+..++++...+|+.....+...+..+++|+|+||+++.+++..+...+++++++
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~v 167 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLF 167 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEE
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEE
Confidence 5679999999 9999999999999988999999999999888888888889999999999999998888889999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||.+.+.+|...+..+++
T Consensus 168 IiDEaH~~~~~~~~~~~~~i~~ 189 (400)
T 1s2m_A 168 IMDEADKMLSRDFKTIIEQILS 189 (400)
T ss_dssp EEESHHHHSSHHHHHHHHHHHT
T ss_pred EEeCchHhhhhchHHHHHHHHH
Confidence 9999999999999988888764
No 24
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.72 E-value=1.2e-17 Score=118.25 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=83.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccH---HHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSM---DNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++++++|++| |+.|+++.++++++ .++++..++||.+. ..+...+..+ ++|+|+||+++.+++.. +.+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~ 139 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKR 139 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hcccc
Confidence 5789999999 99999999999988 88999999999988 6667777776 99999999999988875 66789
Q ss_pred ccEEEEchh----------hhhhh-cCcHHH-HHhhhh
Q psy18035 77 IQYVVFDEA----------DRLFE-MGFDVE-QQSPCD 102 (104)
Q Consensus 77 l~~lVlDEa----------D~ll~-~gf~~~-i~~i~~ 102 (104)
++++|+||| |++++ .||.++ +..+++
T Consensus 140 ~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~ 177 (414)
T 3oiy_A 140 FDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFS 177 (414)
T ss_dssp CSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHH
Confidence 999999999 56667 899888 777664
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.72 E-value=6.3e-17 Score=112.99 Aligned_cols=98 Identities=24% Similarity=0.375 Sum_probs=88.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.+++++|++| |+.|+++.++++....++++..++|+.+..++...+. +++|+|+||+++.+.+..+.+.+++++++
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~v 166 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMF 166 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 5789999999 9999999999999888999999999998877766655 68999999999999999888889999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||.+.+.+|...+..+++
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~ 188 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFT 188 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHH
T ss_pred EEEChHHhhCCCcHHHHHHHHH
Confidence 9999999999999999888764
No 26
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.72 E-value=7.2e-17 Score=110.54 Aligned_cols=97 Identities=32% Similarity=0.547 Sum_probs=88.1
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
+++++|++| |+.|+++.++++.+..+.++..++|+.+...+...+.+ ++|+|+||+++.+++..+.+.+++++++|
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 134 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVI 134 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEE
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEE
Confidence 568999999 99999999999998889999999999988877776654 89999999999999998888899999999
Q ss_pred EchhhhhhhcCcHHHHHhhhh
Q psy18035 82 FDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 82 lDEaD~ll~~gf~~~i~~i~~ 102 (104)
+||||.+.+.+|...+..++.
T Consensus 135 iDEah~~~~~~~~~~~~~~~~ 155 (337)
T 2z0m_A 135 IDEADLMFEMGFIDDIKIILA 155 (337)
T ss_dssp EESHHHHHHTTCHHHHHHHHH
T ss_pred EEChHHhhccccHHHHHHHHh
Confidence 999999999999999888765
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.72 E-value=2.6e-17 Score=120.52 Aligned_cols=99 Identities=28% Similarity=0.512 Sum_probs=84.7
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhcc----CCceEEEEEcCccHHHHHHHhc-CCCcEEEeCcHHHHHHHHhC-CCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKF----TKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEM-ELKL 74 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~----~~~~~~~~~g~~~~~~~~~~l~-~~~~IlV~TP~~l~~l~~~~-~~~l 74 (104)
.++++||++| ||.|+++.++++... ....+...+||.....+...+. .+++|+|+||+++.+++.+. ...+
T Consensus 145 ~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 224 (563)
T 3i5x_A 145 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 224 (563)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcccccc
Confidence 3579999999 999999999998543 3567888899999888877774 47999999999999988765 3458
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
++++++|+||||+|++.||.+++..|+.
T Consensus 225 ~~~~~lViDEah~l~~~~f~~~~~~i~~ 252 (563)
T 3i5x_A 225 RFVDYKVLDEADRLLEIGFRDDLETISG 252 (563)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred ccceEEEEeCHHHHhccchHHHHHHHHH
Confidence 8999999999999999999999988864
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.71 E-value=1.9e-16 Score=109.37 Aligned_cols=98 Identities=29% Similarity=0.476 Sum_probs=89.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++++++|++| |+.|+++.++++....++++...+|+.....+...+. +++|+|+||+++.+.+..+...+++++++
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 151 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYF 151 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEE
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEE
Confidence 4789999999 9999999999999888899999999998887776665 68999999999999999888889999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||.+.+.+|...+..+++
T Consensus 152 IiDEah~~~~~~~~~~~~~~~~ 173 (367)
T 1hv8_A 152 ILDEADEMLNMGFIKDVEKILN 173 (367)
T ss_dssp EEETHHHHHTTTTHHHHHHHHH
T ss_pred EEeCchHhhhhchHHHHHHHHH
Confidence 9999999999999999888765
No 29
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.69 E-value=1.7e-16 Score=110.84 Aligned_cols=99 Identities=25% Similarity=0.440 Sum_probs=87.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
.+++++|++| |+.|+++.++++.+.. ++++..++|+.+...+...+.++ ++|+|+||+++..++..+...+++++
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 154 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 154 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCS
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccC
Confidence 4679999999 9999999999998776 79999999999988777777654 89999999999999998888899999
Q ss_pred EEEEchhhhhhh-cCcHHHHHhhhh
Q psy18035 79 YVVFDEADRLFE-MGFDVEQQSPCD 102 (104)
Q Consensus 79 ~lVlDEaD~ll~-~gf~~~i~~i~~ 102 (104)
++|+||||.+.+ .+|...+..+++
T Consensus 155 ~vViDEaH~~~~~~~~~~~~~~~~~ 179 (391)
T 1xti_A 155 HFILDECDKMLEQLDMRRDVQEIFR 179 (391)
T ss_dssp EEEECSHHHHTSSHHHHHHHHHHHH
T ss_pred EEEEeCHHHHhhccchHHHHHHHHh
Confidence 999999999998 488888887764
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.68 E-value=4e-17 Score=127.97 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=85.3
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccH---HHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSM---DNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
+++++||++| ||.|+++.+++++ ..++++..++||.+. ..+...+.++ ++|+|+||+++.+++.. +.+++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~ 196 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKR 196 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSC
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccC
Confidence 5789999999 9999999999988 778999999999987 7777888877 99999999999988775 66789
Q ss_pred ccEEEEchh----------hhhhh-cCcHHH-HHhhhh
Q psy18035 77 IQYVVFDEA----------DRLFE-MGFDVE-QQSPCD 102 (104)
Q Consensus 77 l~~lVlDEa----------D~ll~-~gf~~~-i~~i~~ 102 (104)
++++|+||| |+|++ .||.++ ++.+++
T Consensus 197 l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~ 234 (1104)
T 4ddu_A 197 FDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFS 234 (1104)
T ss_dssp CSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHH
T ss_pred cCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHH
Confidence 999999999 77888 899998 777765
No 31
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.68 E-value=8.1e-17 Score=123.19 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=83.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM------ELK 73 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l-~~l~~~~------~~~ 73 (104)
.+.+++|++| ||.|+.+++..+.+++++++.+++||.+...+. +..++||++||||++ .++++.+ .+.
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~ 228 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLV 228 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCC
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhc
Confidence 3578999999 999999999999999999999999999865443 334699999999999 6887765 466
Q ss_pred CCCccEEEEchhhhhh-h---------------cCcHHHHHhhhhc
Q psy18035 74 LSSIQYVVFDEADRLF-E---------------MGFDVEQQSPCDT 103 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll-~---------------~gf~~~i~~i~~~ 103 (104)
++.++++|+||||.|| | .+|.+++..|++.
T Consensus 229 lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~ 274 (922)
T 1nkt_A 229 QRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPL 274 (922)
T ss_dssp CCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHh
Confidence 8999999999999999 4 3588888888753
No 32
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.67 E-value=1e-16 Score=116.31 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=78.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCC-CCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~-~l~~l~~l 80 (104)
++++||++| |+.|+++.++++....++++..++|+.+...+...+..+++|+|+||+++.+++..+.+ .+++++++
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~v 134 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 134 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEE
Confidence 789999999 99999999999998889999999999987777777777899999999999999998887 79999999
Q ss_pred EEchhhhhhhcCcHHH
Q psy18035 81 VFDEADRLFEMGFDVE 96 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~ 96 (104)
|+||||.+.+.++...
T Consensus 135 ViDEah~~~~~~~~~~ 150 (556)
T 4a2p_A 135 IFDECHNTTGNHPYNV 150 (556)
T ss_dssp EEETGGGCSTTSHHHH
T ss_pred EEECCcccCCcchHHH
Confidence 9999999998774433
No 33
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.65 E-value=2.2e-16 Score=114.33 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=80.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCC-CCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~-~l~~l~~l 80 (104)
++++||++| |+.|+++.++++.+..++++..++|+.+...+...+..+++|+|+||+++.+++..+.+ .+++++++
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~v 131 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLM 131 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEE
Confidence 789999999 99999999999998889999999999987777667777899999999999999998877 78999999
Q ss_pred EEchhhhhhhcC
Q psy18035 81 VFDEADRLFEMG 92 (104)
Q Consensus 81 VlDEaD~ll~~g 92 (104)
|+||||.+.+.+
T Consensus 132 ViDEah~~~~~~ 143 (555)
T 3tbk_A 132 IFDECHNTSKNH 143 (555)
T ss_dssp EETTGGGCSTTC
T ss_pred EEECccccCCcc
Confidence 999999999875
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.64 E-value=3.5e-16 Score=122.23 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=77.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCc----eEEEEEcCccHHH---HHHHhcCCCcEEEeCcHHHHHHHHhCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKL----QSTCLLGGDSMDN---QFARLHASPDIVVATPGRFLHIVVEMELK 73 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~----~~~~~~g~~~~~~---~~~~l~~~~~IlV~TP~~l~~l~~~~~~~ 73 (104)
++++++|++| ||.|+++.++++.+..++ ++..++||.+... +...+.+ ++|+|+|||++.+++.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---- 172 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---- 172 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----
Confidence 4689999999 999999999999998888 8999999998766 3455556 99999999999998775
Q ss_pred CCCccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 74 LSSIQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
+++++++|+||||+|++ |.++++.++
T Consensus 173 L~~l~~lViDEah~~l~--~~~~~~~i~ 198 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILK--ASKNVDKLL 198 (1054)
T ss_dssp SCCCSEEEESCHHHHHT--STHHHHHHH
T ss_pred hccCCEEEEeChhhhhh--ccccHHHHH
Confidence 67999999999999998 344555443
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.62 E-value=8.5e-16 Score=110.69 Aligned_cols=97 Identities=25% Similarity=0.334 Sum_probs=79.5
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCCCCCCc
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSI 77 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~-~~~~l~~l 77 (104)
.+++++||++| ||.|+++.++++.++. ++++....|+...... ...+++|+|+||+++.+++.+ +.+.++++
T Consensus 160 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 236 (479)
T 3fmp_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (479)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence 35679999999 9999999999998764 6778888777654332 134579999999999999866 56778999
Q ss_pred cEEEEchhhhhhh-cCcHHHHHhhhh
Q psy18035 78 QYVVFDEADRLFE-MGFDVEQQSPCD 102 (104)
Q Consensus 78 ~~lVlDEaD~ll~-~gf~~~i~~i~~ 102 (104)
+++|+||||.+++ .+|...+..+.+
T Consensus 237 ~~iViDEah~~~~~~~~~~~~~~i~~ 262 (479)
T 3fmp_B 237 KVFVLDEADVMIATQGHQDQSIRIQR 262 (479)
T ss_dssp CEEEECCHHHHHTSTTHHHHHHHHHT
T ss_pred CEEEEECHHHHhhcCCcHHHHHHHHh
Confidence 9999999999997 588888877765
No 36
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.61 E-value=2.8e-15 Score=104.44 Aligned_cols=95 Identities=27% Similarity=0.458 Sum_probs=81.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.+++++|++| |+.|+++.++++.+..++.+...+|+...... ..+++|+|+||+++.+++..+...+++++++
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 149 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIF 149 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEE
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEE
Confidence 5689999999 99999999999999888988888877543322 3368999999999999999988899999999
Q ss_pred EEchhhhhhh-cCcHHHHHhhhh
Q psy18035 81 VFDEADRLFE-MGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~-~gf~~~i~~i~~ 102 (104)
|+||||.+.+ .+|...+..+.+
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~ 172 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKR 172 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHH
T ss_pred EEEChhhhcCccccHHHHHHHHH
Confidence 9999999998 688888777654
No 37
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.60 E-value=2.1e-15 Score=114.78 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=77.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCC-CCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~-~l~~l~~l 80 (104)
++++||++| |+.|+++.++++....++++..++|+.+...+...+..+++|+|+||+++.+.+..+.+ .+++++++
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 375 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEE
Confidence 789999999 99999999999998889999999999988777777777899999999999999998877 78999999
Q ss_pred EEchhhhhhhcCc
Q psy18035 81 VFDEADRLFEMGF 93 (104)
Q Consensus 81 VlDEaD~ll~~gf 93 (104)
|+||||++.+.+.
T Consensus 376 ViDEaH~~~~~~~ 388 (797)
T 4a2q_A 376 IFDECHNTTGNHP 388 (797)
T ss_dssp EETTGGGCSTTSH
T ss_pred EEECccccCCCcc
Confidence 9999999987753
No 38
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.59 E-value=2.5e-15 Score=115.27 Aligned_cols=88 Identities=11% Similarity=0.180 Sum_probs=75.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHH-HHHHHhCC------CC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEME------LK 73 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l-~~l~~~~~------~~ 73 (104)
.+.+++|++| ||.|+++++..+.+++++++.+++||.+.... ....++||++||||++ .++++.+. +.
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~ 196 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLV 196 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCC
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcc
Confidence 3568999999 99999999999999999999999999985443 3344699999999999 78888763 56
Q ss_pred CC---CccEEEEchhhhhh-hcCc
Q psy18035 74 LS---SIQYVVFDEADRLF-EMGF 93 (104)
Q Consensus 74 l~---~l~~lVlDEaD~ll-~~gf 93 (104)
++ +++++|+||||.|| +.+.
T Consensus 197 ~r~d~~l~~lIIDEaDsmLiDear 220 (997)
T 2ipc_A 197 LRHDHPLHYAIIDEVDSILIDEAR 220 (997)
T ss_dssp SCSSSSSCEEEETTHHHHTTSSTT
T ss_pred cccCCCcceEEEechHHHHHhCCC
Confidence 78 99999999999998 5454
No 39
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.59 E-value=3.7e-15 Score=104.53 Aligned_cols=97 Identities=25% Similarity=0.331 Sum_probs=79.7
Q ss_pred CCCeeEEEehh---HHHHHHHHHHHHhccC-CceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCCCCCCc
Q psy18035 3 FANINYLISFP---IVQQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSI 77 (104)
Q Consensus 3 ~~~~~~lil~P---La~Qi~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~-~~~~l~~l 77 (104)
.++++++|++| |+.|+++.++++.+.. ++++....|+....... ..+++|+|+||+++.+++.+ +.+.++++
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 35679999999 9999999999998764 67888888776644331 34589999999999999866 66778999
Q ss_pred cEEEEchhhhhhh-cCcHHHHHhhhh
Q psy18035 78 QYVVFDEADRLFE-MGFDVEQQSPCD 102 (104)
Q Consensus 78 ~~lVlDEaD~ll~-~gf~~~i~~i~~ 102 (104)
+++|+||||.+++ .+|...+..+.+
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~ 195 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQR 195 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHH
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHh
Confidence 9999999999997 688888777654
No 40
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=98.68 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCeeEEEehh---HHHH-HHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCC------CC
Q psy18035 4 ANINYLISFP---IVQQ-TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME------LK 73 (104)
Q Consensus 4 ~~~~~lil~P---La~Q-i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~------~~ 73 (104)
.+++++|++| |+.| +.+.++++... ++++..+.|+.........+..+++|+|+||+++.+.+.... ..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 159 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQ 159 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCC
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccc
Confidence 3679999999 9999 78888888765 678888888876555544555578999999999998887653 56
Q ss_pred CCCccEEEEchhhhhhhcCcHHHHH
Q psy18035 74 LSSIQYVVFDEADRLFEMGFDVEQQ 98 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll~~gf~~~i~ 98 (104)
+++++++|+||||.+.+.++...+.
T Consensus 160 ~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 160 LSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp GGGCSEEEETTC-------CHHHHH
T ss_pred hhcccEEEEECchhhccCCcHHHHH
Confidence 7899999999999999887766653
No 41
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.57 E-value=4.9e-15 Score=110.62 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=76.9
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCC-CCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~-~l~~l~~l 80 (104)
+.++||++| |+.|..+.++++....++++..++|+.+...+...+..+++|+|+||+++.+.+..+.+ .+++++++
T Consensus 61 ~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~v 140 (696)
T 2ykg_A 61 KGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 140 (696)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEE
Confidence 378999999 99999999999998889999999999877666666667899999999999999998877 78999999
Q ss_pred EEchhhhhhhc
Q psy18035 81 VFDEADRLFEM 91 (104)
Q Consensus 81 VlDEaD~ll~~ 91 (104)
|+||||.+.+.
T Consensus 141 ViDEaH~~~~~ 151 (696)
T 2ykg_A 141 IFDECHNTSKQ 151 (696)
T ss_dssp EEETGGGCSTT
T ss_pred EEeCCCcccCc
Confidence 99999997543
No 42
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.54 E-value=9.6e-15 Score=113.01 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=75.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCC-CCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~-~l~~l~~l 80 (104)
+.++||++| |+.|.++.++++....++++..++|+.+...+...+..+++|+|+||+++.+++..+.+ .+++++++
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEE
Confidence 688999999 99999999999998889999999999987776666667799999999999999998877 78999999
Q ss_pred EEchhhhhhhcC
Q psy18035 81 VFDEADRLFEMG 92 (104)
Q Consensus 81 VlDEaD~ll~~g 92 (104)
|+||||++.+.+
T Consensus 376 ViDEaH~~~~~~ 387 (936)
T 4a2w_A 376 IFDECHNTTGNH 387 (936)
T ss_dssp EEETGGGCSTTC
T ss_pred EEECccccCCCc
Confidence 999999998765
No 43
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.52 E-value=3.3e-14 Score=103.57 Aligned_cols=95 Identities=21% Similarity=0.392 Sum_probs=73.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.++++||++| |+.|+++.++++.+..++.+...+++...... ..+++|+|+||+++.+.+..+.+.+++++++
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lI 263 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KIDAQIVIGTPGTVMDLMKRRQLDARDIKVF 263 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cCCCCEEEECHHHHHHHHHcCCccccCCCEE
Confidence 4679999999 99999999999988877777766665443322 3368999999999999999988899999999
Q ss_pred EEchhhhhhh-cCcHHHHHhhhh
Q psy18035 81 VFDEADRLFE-MGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~-~gf~~~i~~i~~ 102 (104)
|+||||.+.+ .+|...+..+.+
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~ 286 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKH 286 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHH
T ss_pred EEechhhhcccCCcHHHHHHHHH
Confidence 9999999998 688888877764
No 44
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.8e-14 Score=112.02 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=76.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++.+++|++| ||.|+++.++++.. ++..++|+.+. ..+++|+|+||++|.+++.++...+++++++
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 4689999999 99999999998765 56678888763 3458999999999999999888778999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||+|.+.+|...+..++.
T Consensus 295 VIDEaH~l~d~~rg~~~e~ii~ 316 (1108)
T 3l9o_A 295 IFDEVHYMRDKERGVVWEETII 316 (1108)
T ss_dssp EEETGGGTTSHHHHHHHHHHHH
T ss_pred EEhhhhhccccchHHHHHHHHH
Confidence 9999999999999888887764
No 45
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.45 E-value=6.3e-13 Score=93.96 Aligned_cols=93 Identities=23% Similarity=0.221 Sum_probs=76.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.+.++||++| |+.|..+.++++......++..++|+........ ...+++|+|+||+++...+..+.+.+.+++++
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~v 129 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLI 129 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEE
Confidence 4678999999 9999999999887655668888898887765433 33468999999999999998888889999999
Q ss_pred EEchhhhhhhcCcHHHH
Q psy18035 81 VFDEADRLFEMGFDVEQ 97 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i 97 (104)
|+||||.+.+......+
T Consensus 130 IiDEaH~~~~~~~~~~~ 146 (494)
T 1wp9_A 130 VFDEAHRAVGNYAYVFI 146 (494)
T ss_dssp EEETGGGCSTTCHHHHH
T ss_pred EEECCcccCCCCcHHHH
Confidence 99999999866433333
No 46
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.42 E-value=4.5e-14 Score=105.48 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=69.0
Q ss_pred CeeEEEehh---HHHHH-HHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHH------HhCCCCC
Q psy18035 5 NINYLISFP---IVQQT-FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV------VEMELKL 74 (104)
Q Consensus 5 ~~~~lil~P---La~Qi-~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~------~~~~~~l 74 (104)
+.++||++| |+.|. .+.++++... ++++..++|+.....+...+..+++|+|+||+++.+.+ ..+.+.+
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~ 134 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQL 134 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCG
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceec
Confidence 478999999 99999 9999998765 58899999998776666666678999999999999888 4556788
Q ss_pred CCccEEEEchhhhhhhcC
Q psy18035 75 SSIQYVVFDEADRLFEMG 92 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~g 92 (104)
.+++++|+||||++...+
T Consensus 135 ~~~~lvViDEaH~~~~~~ 152 (699)
T 4gl2_A 135 SDFSLIIIDECHHTNKEA 152 (699)
T ss_dssp GGCSEEEEESGGGCBTTB
T ss_pred ccCcEEEEECccccCccc
Confidence 999999999999986544
No 47
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.41 E-value=3.5e-13 Score=101.58 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=78.4
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
+.++++++| ||.|+++.++++.+ .++++...+|+...... ....++|+|+||+++..++++....+++++++|
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vI 143 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILV 143 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEE
Confidence 579999999 99999999976654 47889999998765432 123689999999999999988776789999999
Q ss_pred EchhhhhhhcCcHHHHHhhhh
Q psy18035 82 FDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 82 lDEaD~ll~~gf~~~i~~i~~ 102 (104)
+||||.+.+.++...++.++.
T Consensus 144 iDE~H~l~~~~r~~~~~~ll~ 164 (720)
T 2zj8_A 144 ADEIHLIGSRDRGATLEVILA 164 (720)
T ss_dssp EETGGGGGCTTTHHHHHHHHH
T ss_pred EECCcccCCCcccHHHHHHHH
Confidence 999999998888888877764
No 48
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.41 E-value=2.8e-13 Score=101.85 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=77.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
+.++++++| ||.|+++.++.+.+ .++++...+|+....+. ...+++|+|+||+++..+++++...+++++++|
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vI 143 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLV 143 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEE
Confidence 578999999 99999998865543 47889999998765442 123689999999999999988776689999999
Q ss_pred EchhhhhhhcCcHHHHHhhhh
Q psy18035 82 FDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 82 lDEaD~ll~~gf~~~i~~i~~ 102 (104)
+||||.+.+.++...++.++.
T Consensus 144 iDE~H~l~~~~r~~~~~~ll~ 164 (702)
T 2p6r_A 144 VDEIHLLDSEKRGATLEILVT 164 (702)
T ss_dssp ETTGGGGGCTTTHHHHHHHHH
T ss_pred EeeeeecCCCCcccHHHHHHH
Confidence 999999998888888777653
No 49
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.40 E-value=7.1e-13 Score=103.40 Aligned_cols=87 Identities=11% Similarity=0.156 Sum_probs=74.3
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++.+++|++| |+.|+++.++++.. ++..++|+.+.. ..++|+|+||+++.+++.++...+++++++
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lV 196 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWV 196 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEE
Confidence 4689999999 99999999998765 577788887643 357999999999999998888889999999
Q ss_pred EEchhhhhhhcCcHHHHHhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~ 101 (104)
|+||||.+.+.++......++
T Consensus 197 ViDEaH~l~d~~rg~~~e~il 217 (1010)
T 2xgj_A 197 IFDEVHYMRDKERGVVWEETI 217 (1010)
T ss_dssp EEETGGGGGCTTTHHHHHHHH
T ss_pred EEechhhhcccchhHHHHHHH
Confidence 999999999998877766654
No 50
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.39 E-value=4e-13 Score=101.05 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=78.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++.++++++| ||.|+++.++.+.. .++++...+|+....+. .+ .+++|+|+||+++..+++++...+++++++
T Consensus 74 ~~~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~v 149 (715)
T 2va8_A 74 NGGKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYF 149 (715)
T ss_dssp SCSEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEE
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEE
Confidence 3679999999 99999998865544 47888888988765443 22 368999999999999998877668999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||.+.+.++...++.+++
T Consensus 150 IiDE~H~l~~~~~~~~l~~i~~ 171 (715)
T 2va8_A 150 VLDELHYLNDPERGPVVESVTI 171 (715)
T ss_dssp EECSGGGGGCTTTHHHHHHHHH
T ss_pred EEechhhcCCcccchHHHHHHH
Confidence 9999999988788888777664
No 51
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.37 E-value=1.6e-12 Score=99.25 Aligned_cols=79 Identities=16% Similarity=0.289 Sum_probs=68.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHH---HHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQ---FARLHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.+++|++| ||.|+++.++++....++++..++|+.+..+. ...+.++ ++|+||||+++.+ .+.++++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCC
Confidence 679999999 99999999999998889999999999886653 3445565 9999999998754 5668999
Q ss_pred cEEEEchhhhh
Q psy18035 78 QYVVFDEADRL 88 (104)
Q Consensus 78 ~~lVlDEaD~l 88 (104)
.++|+||+|++
T Consensus 492 ~lVVIDEaHr~ 502 (780)
T 1gm5_A 492 GLVIIDEQHRF 502 (780)
T ss_dssp CEEEEESCCCC
T ss_pred ceEEecccchh
Confidence 99999999996
No 52
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.36 E-value=5.2e-13 Score=104.04 Aligned_cols=89 Identities=13% Similarity=0.198 Sum_probs=74.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++++++|++| |+.|+++.++++.. ++++..++|+.+.. ..++|+|+||+++.+++..+...+++++++
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lv 151 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFV 151 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEE
Confidence 4678999999 99999998887532 67888888887533 348999999999999998888888999999
Q ss_pred EEchhhhhhhcCcHHHHHhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~ 101 (104)
|+||||++.+.+|......++
T Consensus 152 ViDEaH~l~d~~~g~~~e~ii 172 (997)
T 4a4z_A 152 IFDEVHYVNDQDRGVVWEEVI 172 (997)
T ss_dssp EECCTTCCCTTCTTCCHHHHH
T ss_pred EEECcccccccchHHHHHHHH
Confidence 999999999988777666554
No 53
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.32 E-value=1.5e-12 Score=97.88 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=67.7
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
+.+++|++| ||.|+++.+.+. .+.++...+|+.. +..+++|+|+|||++ ++.+.+.+++++++|
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~---~g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lV 323 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKA---HGIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIII 323 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH---HSCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEE
T ss_pred CCeEEEEcchHHHHHHHHHHHHHH---hCCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEE
Confidence 468999999 999998866544 3455666777754 456799999999997 467788899999999
Q ss_pred EchhhhhhhcCcHHHHHhhhh
Q psy18035 82 FDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 82 lDEaD~ll~~gf~~~i~~i~~ 102 (104)
+||| .+++.+|..++..|++
T Consensus 324 lDEA-H~l~~~~~~~l~~Il~ 343 (666)
T 3o8b_A 324 CDEC-HSTDSTTILGIGTVLD 343 (666)
T ss_dssp ETTT-TCCSHHHHHHHHHHHH
T ss_pred Eccc-hhcCccHHHHHHHHHH
Confidence 9999 5788899888887765
No 54
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=85.51 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=62.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhc-cCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGK-FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~-~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++++++++| ++.|+.+.+.+... ..+..+........ .....+++|+|+|||++.+++.+ .+++++++
T Consensus 109 ~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~l 180 (235)
T 3llm_A 109 ECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHV 180 (235)
T ss_dssp GCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEE
T ss_pred ceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEE
Confidence 568999999 99999877765432 22333322111110 11124589999999999999887 48999999
Q ss_pred EEchhhhh-hhcCcH-HHHHhhhh
Q psy18035 81 VFDEADRL-FEMGFD-VEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~l-l~~gf~-~~i~~i~~ 102 (104)
|+||||++ ++.+|. ..++.+++
T Consensus 181 VlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 181 IVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp EECCTTSCCHHHHHHHHHHHHHHH
T ss_pred EEECCccCCcchHHHHHHHHHHHh
Confidence 99999997 888887 46666553
No 55
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.29 E-value=7.2e-12 Score=93.09 Aligned_cols=90 Identities=14% Similarity=0.237 Sum_probs=69.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---h---cCCCcEEEeCcHHHH------HHHHh
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---L---HASPDIVVATPGRFL------HIVVE 69 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l---~~~~~IlV~TP~~l~------~l~~~ 69 (104)
..++||++| |+.|..+.++++ ++++..+.|+.+..+.... + ..+++|+++||+++. +.+..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~ 159 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK 159 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh
Confidence 458999999 999999988886 6788888888876654433 2 345899999999874 23332
Q ss_pred CCCCCCCccEEEEchhhhhhhcC--cHHHHHh
Q psy18035 70 MELKLSSIQYVVFDEADRLFEMG--FDVEQQS 99 (104)
Q Consensus 70 ~~~~l~~l~~lVlDEaD~ll~~g--f~~~i~~ 99 (104)
...+.++.++|+||||.+.++| |.++...
T Consensus 160 -~~~~~~i~~iViDEAH~is~~g~dfr~~~~~ 190 (591)
T 2v1x_A 160 -AYEARRFTRIAVDEVHCCSQWGHDFRPDYKA 190 (591)
T ss_dssp -HHHTTCEEEEEEETGGGGSTTCTTCCGGGGG
T ss_pred -hhhccCCcEEEEECcccccccccccHHHHHH
Confidence 3457899999999999999987 7777654
No 56
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.26 E-value=1.4e-11 Score=100.05 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHH-HhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCC--CCCCCc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKE-LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME--LKLSSI 77 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~-l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~--~~l~~l 77 (104)
++.++++++| ||.|+++.+++ +++..++++..++|+...... ...+++|+|+||+++..++++.. -.++++
T Consensus 971 ~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v 1047 (1724)
T 4f92_B 971 SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNI 1047 (1724)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCccccccccee
Confidence 4568999999 99999998864 677789999999998764433 22358999999999988887643 237899
Q ss_pred cEEEEchhhhhhhcCcHHHHHhh
Q psy18035 78 QYVVFDEADRLFEMGFDVEQQSP 100 (104)
Q Consensus 78 ~~lVlDEaD~ll~~gf~~~i~~i 100 (104)
+++|+||+|.+.+. ....++.+
T Consensus 1048 ~lvViDE~H~l~d~-rg~~le~i 1069 (1724)
T 4f92_B 1048 NLFVVDEVHLIGGE-NGPVLEVI 1069 (1724)
T ss_dssp SEEEECCGGGGGST-THHHHHHH
T ss_pred eEEEeechhhcCCC-CCccHHHH
Confidence 99999999988764 44444443
No 57
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.23 E-value=1.6e-11 Score=99.85 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=72.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCC--CCCCcc
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL--KLSSIQ 78 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~--~l~~l~ 78 (104)
++.++++++| ||.|+++.+++..+..++++..++|+++..++ ...+++|+|+||+++..++++... .+++++
T Consensus 133 ~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~ 209 (1724)
T 4f92_B 133 DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVR 209 (1724)
T ss_dssp TSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcC
Confidence 4678999999 99999999998888889999999999875432 134689999999998777765432 378999
Q ss_pred EEEEchhhhhhhcCcHHHHHh
Q psy18035 79 YVVFDEADRLFEMGFDVEQQS 99 (104)
Q Consensus 79 ~lVlDEaD~ll~~gf~~~i~~ 99 (104)
++|+||+|.+-| .....++.
T Consensus 210 ~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 210 LIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp EEEETTGGGGGS-TTHHHHHH
T ss_pred EEEEecchhcCC-ccHHHHHH
Confidence 999999996644 44444443
No 58
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.22 E-value=4.8e-12 Score=85.80 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=64.3
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEE
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVF 82 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVl 82 (104)
.++||++| |+.|..+.++++......++..++||..... ....+.+|+|+||+++... ....+++++++|+
T Consensus 158 ~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIi 231 (282)
T 1rif_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMN 231 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEE
Confidence 48999999 9999999999998777778888888875443 2234689999999987543 2234678899999
Q ss_pred chhhhhhhcCc
Q psy18035 83 DEADRLFEMGF 93 (104)
Q Consensus 83 DEaD~ll~~gf 93 (104)
||||++.+..+
T Consensus 232 DEaH~~~~~~~ 242 (282)
T 1rif_A 232 DECHLATGKSI 242 (282)
T ss_dssp ETGGGCCHHHH
T ss_pred ECCccCCcccH
Confidence 99999986533
No 59
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.20 E-value=3.1e-11 Score=88.41 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=67.4
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHH---Hh-cCCCcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA---RL-HASPDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~---~l-~~~~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
..+||++| |+.|..+.++++ ++++..+.|+.+..+... .+ ...++|+++||+++........+...++.
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 56899999 999988888764 577888888777654432 22 24589999999999632222234458899
Q ss_pred EEEEchhhhhhhcC--cHHHHHhh
Q psy18035 79 YVVFDEADRLFEMG--FDVEQQSP 100 (104)
Q Consensus 79 ~lVlDEaD~ll~~g--f~~~i~~i 100 (104)
++|+||||.+.++| |.++...+
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l 165 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAAL 165 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGG
T ss_pred EEEEeCccccCcCCCccHHHHHHH
Confidence 99999999999887 77766554
No 60
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.19 E-value=1.7e-11 Score=88.72 Aligned_cols=82 Identities=18% Similarity=0.164 Sum_probs=67.1
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
..++||++| |+.|.++.++++..+.+.++..++|+.+..++ +..+++|+|+||+++.. .....++++.++|
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liI 230 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMM 230 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEE
Confidence 359999999 99999999999987777888888888776654 45669999999997653 3345578999999
Q ss_pred EchhhhhhhcC
Q psy18035 82 FDEADRLFEMG 92 (104)
Q Consensus 82 lDEaD~ll~~g 92 (104)
+||||++....
T Consensus 231 iDE~H~~~~~~ 241 (510)
T 2oca_A 231 NDECHLATGKS 241 (510)
T ss_dssp EETGGGCCHHH
T ss_pred EECCcCCCccc
Confidence 99999998643
No 61
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.17 E-value=1.5e-10 Score=91.43 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=65.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHH---HHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQ---FARLHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++++++|++| ||.|+++.+++.....++++..+.|..+..+. .+.+..+ ++|+||||+.+ ++.+.+++
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCccccc
Confidence 4679999999 99999999998877778898888877665443 3445565 99999999765 34567899
Q ss_pred ccEEEEchhhhh
Q psy18035 77 IQYVVFDEADRL 88 (104)
Q Consensus 77 l~~lVlDEaD~l 88 (104)
+.++|+||||++
T Consensus 726 l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 726 LGLLIVDEEHRF 737 (1151)
T ss_dssp EEEEEEESGGGS
T ss_pred cceEEEechHhc
Confidence 999999999995
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.97 E-value=7.8e-10 Score=79.36 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=61.4
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCce-EEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQ-STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
+.++||++| |+.|..+.++++ +++ +..+.|+.+ ..++|+|+||+++......- .+++.++
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~li 196 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLL 196 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEE
Confidence 468999999 999998888773 677 777777764 24799999999998766521 2468899
Q ss_pred EEchhhhhhhcCcHHHHH
Q psy18035 81 VFDEADRLFEMGFDVEQQ 98 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~ 98 (104)
|+||||.+.+.+|..-+.
T Consensus 197 IvDEaH~~~~~~~~~~~~ 214 (472)
T 2fwr_A 197 IFDEVHHLPAESYVQIAQ 214 (472)
T ss_dssp EEETGGGTTSTTTHHHHH
T ss_pred EEECCcCCCChHHHHHHH
Confidence 999999999988876433
No 63
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.94 E-value=4.2e-10 Score=88.14 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=66.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhc-CCCcEEEeCcHHHHHHHHhCC--CCCCCcc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEME--LKLSSIQ 78 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~IlV~TP~~l~~l~~~~~--~~l~~l~ 78 (104)
.+++|||+| |+.|+.+.++.+... .+.|+.+.......+. .+++|+|+||+++..+++... ..++...
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~ 403 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQV 403 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCE
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhcccccc
Confidence 369999999 999999999887653 1235566666666664 468999999999999887643 2356788
Q ss_pred EEEEchhhhhhhcCcHHHHH
Q psy18035 79 YVVFDEADRLFEMGFDVEQQ 98 (104)
Q Consensus 79 ~lVlDEaD~ll~~gf~~~i~ 98 (104)
++|+||||++...++...+.
T Consensus 404 lvIiDEAHrs~~~~~~~~I~ 423 (1038)
T 2w00_A 404 VFIFDECHRSQFGEAQKNLK 423 (1038)
T ss_dssp EEEEESCCTTHHHHHHHHHH
T ss_pred EEEEEccchhcchHHHHHHH
Confidence 99999999998655544443
No 64
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.94 E-value=2.4e-09 Score=78.82 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=65.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccH---------------------------------HHHH--
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSM---------------------------------DNQF-- 46 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~---------------------------------~~~~-- 46 (104)
+++++|++| |+.|+.+.++.+.+..++++..+.|+.+. ....
T Consensus 47 ~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~ 126 (551)
T 3crv_A 47 KPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKK 126 (551)
T ss_dssp CSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHH
Confidence 578999999 99999999999988888888888774321 1221
Q ss_pred ----------------HHhcCCCcEEEeCcHHHHHHHHhCCCCC-CCccEEEEchhhhhhh
Q psy18035 47 ----------------ARLHASPDIVVATPGRFLHIVVEMELKL-SSIQYVVFDEADRLFE 90 (104)
Q Consensus 47 ----------------~~l~~~~~IlV~TP~~l~~l~~~~~~~l-~~l~~lVlDEaD~ll~ 90 (104)
+.....+||+|+|++.+.+......+.+ .+...+|+||||.|.+
T Consensus 127 ~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 127 LKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 2334568999999999996654443433 4677899999999987
No 65
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.81 E-value=5.3e-09 Score=69.55 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=58.3
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCce-EEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQ-STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
+.+++|++| |+.|..+.++++ +++ +..+.|+.. ...+|+|+||+++......- .++.+++
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~ll 196 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLL 196 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEE
Confidence 457899999 999988877763 567 666766653 25799999999988665521 2468899
Q ss_pred EEchhhhhhhcCcHHH
Q psy18035 81 VFDEADRLFEMGFDVE 96 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~ 96 (104)
|+||||.+.+.+|..-
T Consensus 197 IiDEaH~l~~~~~~~i 212 (237)
T 2fz4_A 197 IFDEVHHLPAESYVQI 212 (237)
T ss_dssp EEECSSCCCTTTHHHH
T ss_pred EEECCccCCChHHHHH
Confidence 9999999988877653
No 66
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.80 E-value=1.2e-09 Score=82.49 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=58.2
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEE
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVF 82 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVl 82 (104)
.++++++| ||.|+++.+++. ++++..++|+...... .-....+++++|++.+. ..+.++++|+
T Consensus 180 ~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVI 245 (677)
T 3rc3_A 180 KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVI 245 (677)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEE
T ss_pred CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEE
Confidence 45699999 999999998875 5778888887654000 00011456666653221 2477899999
Q ss_pred chhhhhhhcCcHHHHHhhhh
Q psy18035 83 DEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 83 DEaD~ll~~gf~~~i~~i~~ 102 (104)
||||++++.+|...+..++.
T Consensus 246 DEaH~l~d~~~g~~~~~~l~ 265 (677)
T 3rc3_A 246 DEIQMIRDPARGWAWTRALL 265 (677)
T ss_dssp CSGGGGGCTTTHHHHHHHHH
T ss_pred ecceecCCccchHHHHHHHH
Confidence 99999999999888876654
No 67
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.77 E-value=8.7e-09 Score=74.15 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=53.5
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++++++|++| ||.|+++.++ ++.+....+.... ....+..+.++|||.+.+.+.+. ..+++++++
T Consensus 47 ~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~i 114 (451)
T 2jlq_A 47 RRLRTLILAPTRVVAAEMEEALR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLI 114 (451)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTT------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEE
T ss_pred cCCcEEEECCCHHHHHHHHHHhc------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEE
Confidence 4689999999 9999998775 2222211111111 12334679999999999777654 558999999
Q ss_pred EEchhhhhhhcCcH
Q psy18035 81 VFDEADRLFEMGFD 94 (104)
Q Consensus 81 VlDEaD~ll~~gf~ 94 (104)
|+||||++ +.++.
T Consensus 115 ViDEah~~-~~~~~ 127 (451)
T 2jlq_A 115 VMDEAHFT-DPCSV 127 (451)
T ss_dssp EEETTTCC-SHHHH
T ss_pred EEeCCccC-CcchH
Confidence 99999976 44333
No 68
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.74 E-value=1.3e-09 Score=80.46 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=41.6
Q ss_pred CCeeEEEehh---HHHHHH-HHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHh----CCCCCC
Q psy18035 4 ANINYLISFP---IVQQTF-KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE----MELKLS 75 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~-~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~----~~~~l~ 75 (104)
.++++||++| |+.|.+ +.++.++. .+..+.++ ....+.+|+|+||+++...... ..+...
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~ 301 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQD 301 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCC
Confidence 5789999999 999998 77765532 23333222 2345689999999999987652 345678
Q ss_pred CccEEEEchhhhhhhc
Q psy18035 76 SIQYVVFDEADRLFEM 91 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~ 91 (104)
+++++|+||||++...
T Consensus 302 ~~~lvIiDEaH~~~~~ 317 (590)
T 3h1t_A 302 FFDLIIIDECHRGSAR 317 (590)
T ss_dssp SCSEEEESCCC-----
T ss_pred ccCEEEEECCcccccc
Confidence 8999999999999864
No 69
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.73 E-value=3.6e-10 Score=81.24 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=45.4
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCC--------C
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME--------L 72 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~--------~ 72 (104)
++++++|++| ||.|+++.++.+ ++ ....+.. -.++||+++.+++..+. .
T Consensus 36 ~~~~~lil~Ptr~La~Q~~~~l~~~----~v--~~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~ 95 (440)
T 1yks_A 36 RRLRTLVLAPTRVVLSEMKEAFHGL----DV--KFHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPT 95 (440)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTS----CE--EEESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSS
T ss_pred cCCeEEEEcchHHHHHHHHHHHhcC----Ce--EEecccc--------------eeccCCccceeeecccchhHhhhCcc
Confidence 4689999999 999999887733 22 2111110 03888888765554433 3
Q ss_pred CCCCccEEEEchhhhh
Q psy18035 73 KLSSIQYVVFDEADRL 88 (104)
Q Consensus 73 ~l~~l~~lVlDEaD~l 88 (104)
.+++++++|+||||++
T Consensus 96 ~~~~l~~vViDEah~~ 111 (440)
T 1yks_A 96 RVVNWEVIIMDEAHFL 111 (440)
T ss_dssp CCCCCSEEEETTTTCC
T ss_pred cccCccEEEEECcccc
Confidence 4899999999999999
No 70
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.70 E-value=2.5e-08 Score=71.39 Aligned_cols=82 Identities=9% Similarity=0.130 Sum_probs=53.9
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++++++|++| ||.|+++.++ ++.+....|+... .-..+..+.+.|.+.+.+.+.+ ...+++++++
T Consensus 30 ~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~v 97 (431)
T 2v6i_A 30 KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLY 97 (431)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEE
T ss_pred CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEE
Confidence 4689999999 9999988765 3445444443221 1112345667799988866665 5568999999
Q ss_pred EEchhhhhhhcCcHHHHH
Q psy18035 81 VFDEADRLFEMGFDVEQQ 98 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~ 98 (104)
|+||||++ +.++.....
T Consensus 98 ViDEaH~~-~~~~~~~~~ 114 (431)
T 2v6i_A 98 IMDEAHFL-DPASVAARG 114 (431)
T ss_dssp EEESTTCC-SHHHHHHHH
T ss_pred EEeCCccC-CccHHHHHH
Confidence 99999997 544444433
No 71
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.55 E-value=7.3e-08 Score=72.04 Aligned_cols=86 Identities=10% Similarity=0.078 Sum_probs=57.0
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
+++++||++| ||.|+++.++. ..+. ..++.. . ..-..+..+-+.|.+.+...+... ..+++++++
T Consensus 214 ~~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~i 281 (618)
T 2whx_A 214 RRLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLI 281 (618)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEE
T ss_pred CCCeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEE
Confidence 4689999999 99999987762 2222 111110 0 001123456667777777555444 458999999
Q ss_pred EEchhhhhhhcCcHHHHHhhhh
Q psy18035 81 VFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~i~~ 102 (104)
|+||||++ +.+|...+..|.+
T Consensus 282 ViDEah~~-~~~~~~~~~~i~~ 302 (618)
T 2whx_A 282 VMDEAHFT-DPCSVAARGYIST 302 (618)
T ss_dssp EEESTTCC-SHHHHHHHHHHHH
T ss_pred EEECCCCC-CccHHHHHHHHHH
Confidence 99999998 7788888877654
No 72
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.52 E-value=4.8e-08 Score=70.51 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=56.9
Q ss_pred CeeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEE
Q psy18035 5 NINYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVF 82 (104)
Q Consensus 5 ~~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVl 82 (104)
..++||+|| |+.|..++++++.. +.++..+.|+... ......+|+|+||+++..... +...+.+++|+
T Consensus 86 ~~~~LIv~P~~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIv 155 (500)
T 1z63_A 86 LTPSLVICPLSVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVI 155 (500)
T ss_dssp CSSEEEEECSTTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEE
T ss_pred CCCEEEEccHHHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEE
Confidence 357999999 99999999988764 4566666665421 112357999999999875433 33456789999
Q ss_pred chhhhhhhcC
Q psy18035 83 DEADRLFEMG 92 (104)
Q Consensus 83 DEaD~ll~~g 92 (104)
||||.+-+.+
T Consensus 156 DEaH~~kn~~ 165 (500)
T 1z63_A 156 DEAQNIKNPQ 165 (500)
T ss_dssp ETGGGGSCTT
T ss_pred eCccccCCHh
Confidence 9999997654
No 73
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.51 E-value=1.5e-07 Score=67.81 Aligned_cols=83 Identities=11% Similarity=0.142 Sum_probs=54.3
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
+++++||++| ||.|+++.++ ++.+....+..... -..+..+.+.|.+.+...+... ..+++++++
T Consensus 49 ~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~i 116 (459)
T 2z83_A 49 QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLF 116 (459)
T ss_dssp TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEE
T ss_pred CCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEE
Confidence 4689999999 9999998876 22222211111110 1233457778888887655543 568999999
Q ss_pred EEchhhh-----hhhcCcHHHHH
Q psy18035 81 VFDEADR-----LFEMGFDVEQQ 98 (104)
Q Consensus 81 VlDEaD~-----ll~~gf~~~i~ 98 (104)
|+||||. ++..+|..+..
T Consensus 117 ViDEaH~~~~~~~~~~~~~~~~~ 139 (459)
T 2z83_A 117 VMDEAHFTDPASIAARGYIATKV 139 (459)
T ss_dssp EESSTTCCSHHHHHHHHHHHHHH
T ss_pred EEECCccCCchhhHHHHHHHHHh
Confidence 9999999 77778776654
No 74
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.47 E-value=4.1e-09 Score=79.48 Aligned_cols=65 Identities=12% Similarity=0.238 Sum_probs=41.9
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhC--------CC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM--------EL 72 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~--------~~ 72 (104)
++++++|++| ||.|+++.++.+ ++. ...+. +. .++||+++.+++..+ ..
T Consensus 269 ~~~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~---------l~-----~v~tp~~ll~~l~~~~l~~~l~~~~ 328 (673)
T 2wv9_A 269 KRLRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPA---------VQ-----REHSGNEIVDVMCHATLTHRLMSPL 328 (673)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC-----------------CCCCSCCCEEEEEHHHHHHHHHSSS
T ss_pred CCCcEEEEccHHHHHHHHHHHHhcC----Cee--eeccc---------cc-----ccCCHHHHHHHHHhhhhHHHHhccc
Confidence 4689999999 999999887743 222 10000 00 155665554333222 24
Q ss_pred CCCCccEEEEchhhhh
Q psy18035 73 KLSSIQYVVFDEADRL 88 (104)
Q Consensus 73 ~l~~l~~lVlDEaD~l 88 (104)
.+++++++|+||||++
T Consensus 329 ~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 329 RVPNYNLFVMDEAHFT 344 (673)
T ss_dssp CCCCCSEEEEESTTCC
T ss_pred ccccceEEEEeCCccc
Confidence 6899999999999998
No 75
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.36 E-value=1e-06 Score=67.42 Aligned_cols=81 Identities=17% Similarity=0.125 Sum_probs=54.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
++++++++| ||.|+.+.+.+. .+.++...+|+....+ .....+.+|+++|||++.+.+... ..+++++++|
T Consensus 140 g~~ilvl~P~r~La~q~~~~l~~~---~~~~v~~~vG~~i~~~--~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lI 213 (773)
T 2xau_A 140 NTQVACTQPRRVAAMSVAQRVAEE---MDVKLGEEVGYSIRFE--NKTSNKTILKYMTDGMLLREAMED-HDLSRYSCII 213 (773)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHH---TTCCBTTTEEEEETTE--EECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEE
T ss_pred CceEEecCchHHHHHHHHHHHHHH---hCCchhheecceeccc--cccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEE
Confidence 678999999 999988755443 2333222222211000 011245899999999999877664 4589999999
Q ss_pred Echhhh-hhhc
Q psy18035 82 FDEADR-LFEM 91 (104)
Q Consensus 82 lDEaD~-ll~~ 91 (104)
+||||. +++.
T Consensus 214 lDEah~R~ld~ 224 (773)
T 2xau_A 214 LDEAHERTLAT 224 (773)
T ss_dssp ECSGGGCCHHH
T ss_pred ecCccccccch
Confidence 999995 7763
No 76
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.30 E-value=3.2e-06 Score=63.36 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=57.8
Q ss_pred eeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHH--HHH-hcC-----CCcEEEeCcHHHHHHHHhCCCCCC
Q psy18035 6 INYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQ--FAR-LHA-----SPDIVVATPGRFLHIVVEMELKLS 75 (104)
Q Consensus 6 ~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~--~~~-l~~-----~~~IlV~TP~~l~~l~~~~~~~l~ 75 (104)
.++||++| |..|-.++++++... .+++..++||...... ... ... ..+|+|+|++.+.... ..+.-.
T Consensus 115 ~~~LiV~P~sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~ 191 (644)
T 1z3i_X 115 DKVIVVSPSSLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKG 191 (644)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTS
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcC
Confidence 35899999 888888888887654 4667777776543321 111 221 3789999999887543 334445
Q ss_pred CccEEEEchhhhhhhc
Q psy18035 76 SIQYVVFDEADRLFEM 91 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~ 91 (104)
+..++|+||||++-+.
T Consensus 192 ~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 192 KVGLVICDEGHRLKNS 207 (644)
T ss_dssp CCCEEEETTGGGCCTT
T ss_pred CccEEEEECceecCCh
Confidence 7789999999998644
No 77
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.14 E-value=1.4e-06 Score=64.08 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.0
Q ss_pred CCCcEEEeCcHHHHHHHHhCCC-------CCCCccEEEEchhhhhh
Q psy18035 51 ASPDIVVATPGRFLHIVVEMEL-------KLSSIQYVVFDEADRLF 89 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~~~~~-------~l~~l~~lVlDEaD~ll 89 (104)
..++|+|+|+..+.+....+.+ .+.+...+|+||||.|.
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 4579999999999954332221 24667899999999993
No 78
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.13 E-value=5.6e-06 Score=63.35 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=57.4
Q ss_pred eeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh------------cCCCcEEEeCcHHHHHHHHhCC
Q psy18035 6 INYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL------------HASPDIVVATPGRFLHIVVEME 71 (104)
Q Consensus 6 ~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l------------~~~~~IlV~TP~~l~~l~~~~~ 71 (104)
..+||+|| |..|-.++++++. .++++.+.+|+.......... ....+|+|+|++.+......
T Consensus 287 ~~~LIV~P~sll~qW~~E~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-- 362 (800)
T 3mwy_W 287 GPHIIVVPLSTMPAWLDTFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-- 362 (800)
T ss_dssp SCEEEECCTTTHHHHHHHHHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--
T ss_pred CCEEEEECchHHHHHHHHHHHHC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--
Confidence 45799999 8888888887775 357777777776655544332 12478999999999854322
Q ss_pred CCCCCccEEEEchhhhhhh
Q psy18035 72 LKLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 72 ~~l~~l~~lVlDEaD~ll~ 90 (104)
+.-.+..++|+||||++-+
T Consensus 363 l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 363 LGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp HHTSEEEEEEETTGGGGCC
T ss_pred HhcCCcceeehhhhhhhcC
Confidence 2223678999999999943
No 79
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.92 E-value=2.1e-06 Score=67.03 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=52.9
Q ss_pred eeEEEehh--HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCCCcEEEeCcHHHHHHHHh-CCCCCCCccE
Q psy18035 6 INYLISFP--IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HASPDIVVATPGRFLHIVVE-MELKLSSIQY 79 (104)
Q Consensus 6 ~~~lil~P--La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~IlV~TP~~l~~l~~~-~~~~l~~l~~ 79 (104)
.++||+|| |+.|..+.+.+. +++++..+.|+.... ..... ....+|+|+|++.+...... ..+...++.+
T Consensus 201 ~rvLIVvP~sLl~Qw~~E~~~~---f~l~v~v~~~~~~~~-~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dl 276 (968)
T 3dmq_A 201 ERVLIIVPETLQHQWLVEMLRR---FNLRFALFDDERYAE-AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL 276 (968)
T ss_dssp CCEEEECCTTTHHHHHHHHHHH---SCCCCEECCHHHHHH-HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCE
T ss_pred CeEEEEeCHHHHHHHHHHHHHH---hCCCEEEEccchhhh-hhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCE
Confidence 37999999 888877777543 356665554433222 22211 12469999999887632111 1233567889
Q ss_pred EEEchhhhhhhcC
Q psy18035 80 VVFDEADRLFEMG 92 (104)
Q Consensus 80 lVlDEaD~ll~~g 92 (104)
+|+||||.+-..+
T Consensus 277 VIvDEAH~~kn~~ 289 (968)
T 3dmq_A 277 LVVDEAHHLVWSE 289 (968)
T ss_dssp EEECCSSCCCCBT
T ss_pred EEehhhHhhcCCC
Confidence 9999999996544
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.71 E-value=0.00012 Score=56.21 Aligned_cols=84 Identities=12% Similarity=0.042 Sum_probs=64.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcC-----------------------------------------
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGG----------------------------------------- 39 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~----------------------------------------- 39 (104)
.|..+.|++| ||.|-.+++..+-+++++++.+++..
T Consensus 115 ~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 194 (822)
T 3jux_A 115 IGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNK 194 (822)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCH
T ss_pred cCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhccccccccccccccccccccccc
Confidence 4677899999 99999999999999999999999872
Q ss_pred ---------ccHHHHHHHhcCCCcEEEeCcHHHH-HHHHhCC------CCCCCccEEEEchhhhhh
Q psy18035 40 ---------DSMDNQFARLHASPDIVVATPGRFL-HIVVEME------LKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 40 ---------~~~~~~~~~l~~~~~IlV~TP~~l~-~l~~~~~------~~l~~l~~lVlDEaD~ll 89 (104)
++..+..... .+||.-||...+- +.++.+. .-.+...|.|+||+|-+|
T Consensus 195 ~~~~~~~~~~~~~err~aY--~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 195 EAVEAFQVELKEITRKEAY--LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HHHTTTCEECCBCCHHHHH--HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred ccchhccccCCHHHHHHHh--cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 1111111111 3799999999988 6776542 224778999999999886
No 81
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.33 E-value=0.00063 Score=51.23 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=32.8
Q ss_pred EcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhh
Q psy18035 37 LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 37 ~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~ 90 (104)
.|+.+...+...+..+ +|||+|.+++..+. ++|+||+|+|++
T Consensus 304 ~G~e~~~~~~~~~~~g-----~tpg~LlDyl~~~~-------llVlDEa~~~l~ 345 (661)
T 2d7d_A 304 SGIENYSRHLTLRPPG-----STPYTLLDYFPDDF-------MIVVDESHVTIP 345 (661)
T ss_dssp TTGGGGHHHHTTCCTT-----CCCBCGGGGSCSSC-------EEEEETHHHHHH
T ss_pred ccchhHHHHHccccCC-----CCccHHHHHcccCc-------EEEEecHHHHHH
Confidence 4666777777666655 99999999986543 899999999873
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.23 E-value=0.0018 Score=48.37 Aligned_cols=86 Identities=10% Similarity=0.037 Sum_probs=42.3
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEe-CcHHHHHHHHhCCCCCCCccE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVA-TPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~-TP~~l~~l~~~~~~~l~~l~~ 79 (104)
.++++++++| .|.|+.+.+.......+++.... .+.+ ......|-+++ +|+.. . +........+.++
T Consensus 195 ~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~-~~~~------~~~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~ 265 (608)
T 1w36_D 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK-KRIP------EDASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDV 265 (608)
T ss_dssp CCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC-CSCS------CCCBTTTSCC-------------CTTSCCSCSE
T ss_pred CCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH-hccc------hhhhhhHhhhccCCCch-H-HHhccCCCCCCCE
Confidence 3568899999 88888877776655544331110 0000 00011222333 33321 1 1222222347899
Q ss_pred EEEchhhhhhhcCcHHHHHhhhh
Q psy18035 80 VVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 80 lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
+|+|||+ |++ .+.+..|++
T Consensus 266 lIIDEAs-ml~---~~~~~~Ll~ 284 (608)
T 1w36_D 266 LVVDEAS-MID---LPMMSRLID 284 (608)
T ss_dssp EEECSGG-GCB---HHHHHHHHH
T ss_pred EEEechh-hCC---HHHHHHHHH
Confidence 9999999 666 445555554
No 83
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.32 E-value=0.0038 Score=47.05 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=31.7
Q ss_pred EcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhhh
Q psy18035 37 LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFE 90 (104)
Q Consensus 37 ~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll~ 90 (104)
.|+.+...+......+ +||++|.+++..+. ++|+||+|++++
T Consensus 298 ~Gie~y~~~~~~~~~g-----~tp~~LlDyl~~~~-------llVlDEah~~~~ 339 (664)
T 1c4o_A 298 PGVENYARYFTGKAPG-----EPPYTLLDYFPEDF-------LVFLDESHVTVP 339 (664)
T ss_dssp TTGGGGHHHHHTCCTT-----SCCCCGGGGSCTTC-------EEEEETHHHHHH
T ss_pred CchHHHHHHHhcccCC-----CCchHHHHHHhhcc-------EEEEecccccHH
Confidence 3555666666666555 89999999886433 899999999874
No 84
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.24 E-value=0.21 Score=30.49 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=47.7
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -+..+.+.+++ .++++..++|+++..+....+ +++ .+|+|+|. . -...+++.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----V-AARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----h-hhcCCchhcC
Confidence 457999999 66666666554 367888999998765544333 344 79999993 2 2346677888
Q ss_pred cEEEEc
Q psy18035 78 QYVVFD 83 (104)
Q Consensus 78 ~~lVlD 83 (104)
+++|.-
T Consensus 105 ~~Vi~~ 110 (163)
T 2hjv_A 105 SLVINY 110 (163)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 887753
No 85
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.23 E-value=0.24 Score=31.33 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=47.2
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cC-CCcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
++++||.++ -+..+.+.++.. ++++..++|+++..+....+ ++ ..+|+|+| +.. ...+++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~-~~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVA-SKGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHH-HTTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cch-hcCCCcccC
Confidence 467999999 666666666543 57888899998765544433 33 48999999 333 345677788
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 124 ~~VI~ 128 (191)
T 2p6n_A 124 QHVIN 128 (191)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87775
No 86
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.56 E-value=0.37 Score=29.37 Aligned_cols=69 Identities=9% Similarity=0.150 Sum_probs=47.2
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -+..+.+.+++ .++.+..++|+++..+....+ +++ .+|+|+|. . -...+++.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----G-GTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----h-hhcCCCcccC
Confidence 468999999 66666655554 367888899998865544333 344 79999993 2 3345677888
Q ss_pred cEEEEc
Q psy18035 78 QYVVFD 83 (104)
Q Consensus 78 ~~lVlD 83 (104)
+++|.-
T Consensus 100 ~~Vi~~ 105 (165)
T 1fuk_A 100 SLVINY 105 (165)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 887763
No 87
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.32 E-value=0.41 Score=30.63 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=46.2
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+-++||.+| -+..+.+.+++. ++.+..++|+++..++...+ +++ .+|+|+|. . -...+++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~-~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----V-AARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----T-TTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----h-hhcCCCCccC
Confidence 457899999 666666655543 67888999998876654443 344 78999993 2 2345667777
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77663
No 88
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.15 E-value=0.33 Score=29.93 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=47.3
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -+..+.+.+++ .++++..++|+++..+....+ +++ .+|+|+|. .-...+++.++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccC
Confidence 458999999 66666555543 467888999998866544333 344 89999993 22456778888
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 104 ~~Vi~ 108 (175)
T 2rb4_A 104 TIVVN 108 (175)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88874
No 89
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.67 E-value=0.36 Score=29.80 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=45.8
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -+..+.+.++. .++++..++|+++..+....+ +++ .+|+|+|. .-...+++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhhC
Confidence 457999999 66666655554 367888899998766544333 344 89999994 12345667777
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 101 ~~Vi~ 105 (172)
T 1t5i_A 101 NIAFN 105 (172)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77765
No 90
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.86 E-value=0.94 Score=31.19 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=47.7
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cC-CCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
.+.++||.++ -+..+++.+++ .++++..++|+.+..+....+ ++ ..+|+|+|. .+ ...+++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HH-HTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcCCCccc
Confidence 3568999999 66666665554 367888999998866544333 33 479999993 33 34567788
Q ss_pred ccEEEE
Q psy18035 77 IQYVVF 82 (104)
Q Consensus 77 l~~lVl 82 (104)
++++|.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 887775
No 91
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.82 E-value=0.83 Score=31.33 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=48.3
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -+..+++.+++. ++++..++|+++..+....+ +++ .+|+|+|. .-...+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCC
Confidence 458999999 666666666543 67788899998866554433 344 79999994 23456788888
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88774
No 92
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=92.42 E-value=0.42 Score=29.94 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=36.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHH---HHhcC-CCcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHA-SPDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -+..+.+.++. .++++..++|+++..+.. +..++ ..+|+|+|. .. ...+++.++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hh-hcCCCcccC
Confidence 567999999 66665555554 367888899987654432 22333 478999993 22 234566777
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77664
No 93
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.39 E-value=0.52 Score=37.80 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcC-CCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHA-SPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~-~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++.+++|++| -+..+++.+++.. .+.++..++|+++..+..+. ..+ ..+|+|+|. +-...+++.+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~------v~e~GiDip~ 882 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPT 882 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGGSCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC------cceeeecccC
Confidence 4578999999 6677777666652 36788899999886554333 334 489999994 3345678999
Q ss_pred ccEEEEchhhh
Q psy18035 77 IQYVVFDEADR 87 (104)
Q Consensus 77 l~~lVlDEaD~ 87 (104)
++++|+..+|.
T Consensus 883 v~~VIi~~~~~ 893 (1151)
T 2eyq_A 883 ANTIIIERADH 893 (1151)
T ss_dssp EEEEEETTTTS
T ss_pred CcEEEEeCCCC
Confidence 99999887764
No 94
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.31 E-value=0.62 Score=35.10 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=53.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++.++||.++ .|..+.+.+++. ++++..++|+.+..+.... .+++ .+|+|||- . -...+++.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~-l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----L-LREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----C-CSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----h-hhCCcccCC
Confidence 3568999998 666666666543 6778888888876555444 3334 89999994 2 245678899
Q ss_pred ccEEEEchhhhh
Q psy18035 77 IQYVVFDEADRL 88 (104)
Q Consensus 77 l~~lVlDEaD~l 88 (104)
++++|+-++|..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999888754
No 95
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.88 E-value=1.2 Score=30.14 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=49.9
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -+..+++.+++. +.++..++|+.+..+.... .+++ .+|+|+|. .-...+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccC
Confidence 468999999 666666666543 5778889999876554443 3344 78999994 23456788888
Q ss_pred cEEEEchhh
Q psy18035 78 QYVVFDEAD 86 (104)
Q Consensus 78 ~~lVlDEaD 86 (104)
+++|.-+..
T Consensus 313 ~~Vi~~~~p 321 (395)
T 3pey_A 313 SMVVNYDLP 321 (395)
T ss_dssp EEEEESSCC
T ss_pred CEEEEcCCC
Confidence 888864433
No 96
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=91.57 E-value=1.1 Score=33.83 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=53.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
++.++||.++ .|..+.+.+++. ++++..++|+.+..+.... .+++ .+|+|||- .+ ...+++.+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCC
Confidence 3568899998 666666665543 5778888888876554444 4444 89999993 22 45678899
Q ss_pred ccEEEEchhhhh
Q psy18035 77 IQYVVFDEADRL 88 (104)
Q Consensus 77 l~~lVlDEaD~l 88 (104)
++++|+=++|..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999998887753
No 97
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=91.27 E-value=0.94 Score=30.43 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=46.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
.+.++||.++ -+..+++.+++. ++++..++|+.+..+.... .+++ .+|+|+|. .+. ..+++.+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCccc
Confidence 4567899999 666666666543 6788889999876554433 3343 79999993 222 3456777
Q ss_pred ccEEEEc
Q psy18035 77 IQYVVFD 83 (104)
Q Consensus 77 l~~lVlD 83 (104)
++++|.-
T Consensus 307 ~~~Vi~~ 313 (367)
T 1hv8_A 307 LNCVINY 313 (367)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7777753
No 98
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.14 E-value=1.5 Score=29.89 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=48.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -+..+++.+++ .++++..++|+.+..+.... .+++ .+|+|+|. .-...+++.++
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~~ 319 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERV 319 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC------CCSSCBCCTTE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC------hhhcCCCcccC
Confidence 468999999 66666666654 36788889999876554333 3343 79999994 22346778888
Q ss_pred cEEEEch
Q psy18035 78 QYVVFDE 84 (104)
Q Consensus 78 ~~lVlDE 84 (104)
+++|.-+
T Consensus 320 ~~Vi~~~ 326 (391)
T 1xti_A 320 NIAFNYD 326 (391)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8887644
No 99
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.02 E-value=2 Score=31.08 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=50.9
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cC-CCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
.+.++||.++ -+..+.+.+++... .++.+..++|+++..+....+ ++ ..+|+|+|. +-...+++.+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------hhhcCCCccc
Confidence 3568999999 67777777665532 367888899998866544433 33 489999994 2345677888
Q ss_pred ccEEEEch
Q psy18035 77 IQYVVFDE 84 (104)
Q Consensus 77 l~~lVlDE 84 (104)
++++|.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88877543
No 100
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=90.86 E-value=1.8 Score=29.67 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=47.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -+..+++.+++. ++.+..++|+++..+.... .+++ .+|+|+|. .-...+++.++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCC
Confidence 458999999 677777666654 5678888999876554433 3344 79999993 22345677788
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 328 ~~Vi~ 332 (400)
T 1s2m_A 328 NVVIN 332 (400)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 87775
No 101
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.84 E-value=2.2 Score=31.20 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=51.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cC-CCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
.+.++||.++ -+..+++.+++... .++.+..++|+++..+....+ ++ ..+|+|+|. . -...+++.+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~-~~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----h-hhcCCCccc
Confidence 3568999999 77777777766532 367788899998866544333 33 489999994 2 335677888
Q ss_pred ccEEEEch
Q psy18035 77 IQYVVFDE 84 (104)
Q Consensus 77 l~~lVlDE 84 (104)
++++|.-.
T Consensus 360 v~~VI~~~ 367 (579)
T 3sqw_A 360 VHEVLQIG 367 (579)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 88887543
No 102
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=90.27 E-value=1.3 Score=30.04 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=45.1
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+-++||.++ -+..+.+.++ ..++.+..++|+.+..++...+ +++ .+|+|+|. . -...+++.++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~----~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----v-a~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLL----RLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----V-AARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHH----TTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----T-TTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHH----hCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----h-hhcCccccce
Confidence 457899999 4454444443 3478899999998866554443 333 89999993 2 2345677778
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 77764
No 103
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=90.21 E-value=2.1 Score=29.41 Aligned_cols=67 Identities=10% Similarity=0.176 Sum_probs=46.7
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cC-CCcEEEeCcHHHHHHHHhCCCCCCCcc
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSSIQ 78 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlV~TP~~l~~l~~~~~~~l~~l~ 78 (104)
.++||.++ -+..+.+.+++ .++++..++|+.+..+....+ ++ ..+|+|+|. .-...+++.+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHh----CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccCC
Confidence 47899999 66666655554 367788899998765544333 33 478999994 234567888888
Q ss_pred EEEE
Q psy18035 79 YVVF 82 (104)
Q Consensus 79 ~lVl 82 (104)
++|.
T Consensus 347 ~Vi~ 350 (410)
T 2j0s_A 347 LIIN 350 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 104
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.83 E-value=1.7 Score=31.58 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=45.5
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcC-CCcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHA-SPDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~-~~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+..+||.++ -+.++++.+++ .++++..++|+.+..+.... ..+ ..+|+|+|. . -...+++.++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a-~~~GiD~p~v 305 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQS----KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----A-FGMGINKPNV 305 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----T-SCTTTCCTTC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH----CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----h-hhCCCCccCc
Confidence 457899999 66666665554 36788899999886544333 233 489999994 1 2345677777
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 306 ~~VI~ 310 (523)
T 1oyw_A 306 RFVVH 310 (523)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77765
No 105
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=89.80 E-value=2.4 Score=29.87 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=46.8
Q ss_pred eEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 7 NYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
++||.++ -|..+.+.+++ .++.+..++|+.+..+....+ +++ .+|+|+|. +-...+++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSE----KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHH----TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 4899999 66666665554 367888999998766544443 344 89999994 3345778888888
Q ss_pred EEE
Q psy18035 80 VVF 82 (104)
Q Consensus 80 lVl 82 (104)
+|.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 106
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.73 E-value=1.9 Score=32.01 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=47.7
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cC-CCcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
.+.++||.++ -+.++.+.+++ .++++..++|+++..+....+ .+ ..+|+|+|. . -...+++.+
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a-~~~GID~p~ 335 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQN----LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----A-FGMGIDKPD 335 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----T-SCTTCCCSC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHH----CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----h-hhcCCCccc
Confidence 4568999999 67776666654 367889999998866544333 23 489999993 2 234567778
Q ss_pred ccEEEE
Q psy18035 77 IQYVVF 82 (104)
Q Consensus 77 l~~lVl 82 (104)
++++|.
T Consensus 336 V~~VI~ 341 (591)
T 2v1x_A 336 VRFVIH 341 (591)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 887774
No 107
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.64 E-value=1.4 Score=30.50 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=45.6
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEc--------CccHHHHHH---HhcCC-CcEEEeCcHHHHHHHH
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLG--------GDSMDNQFA---RLHAS-PDIVVATPGRFLHIVV 68 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g--------~~~~~~~~~---~l~~~-~~IlV~TP~~l~~l~~ 68 (104)
.+.++||.++ -+..+.+.+++. ++++..++| +++..++.. ...++ .+|+|+|. . -
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~-~ 429 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----V-G 429 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----G-G
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----c-c
Confidence 4678999999 666666666554 678888888 655433332 23333 79999993 2 2
Q ss_pred hCCCCCCCccEEEEch
Q psy18035 69 EMELKLSSIQYVVFDE 84 (104)
Q Consensus 69 ~~~~~l~~l~~lVlDE 84 (104)
...+++..++++|+-+
T Consensus 430 ~~Gldl~~~~~Vi~~d 445 (494)
T 1wp9_A 430 EEGLDVPEVDLVVFYE 445 (494)
T ss_dssp GGGGGSTTCCEEEESS
T ss_pred ccCCCchhCCEEEEeC
Confidence 3467788888888644
No 108
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.54 E-value=2.3 Score=32.69 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=49.3
Q ss_pred CeeEEEehh---HHHHHHHHHHH----H---hccCCceEEEEEcCccHHHHHHHhcC--------C-CcEEEeCcHHHHH
Q psy18035 5 NINYLISFP---IVQQTFKFVKE----L---GKFTKLQSTCLLGGDSMDNQFARLHA--------S-PDIVVATPGRFLH 65 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~----l---~~~~~~~~~~~~g~~~~~~~~~~l~~--------~-~~IlV~TP~~l~~ 65 (104)
+.++||.+| -+.++.+.+++ + ....++.+..++|+.+..++...+.. + ..|+|+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 468999999 55555555543 2 22357889999999998877665532 2 58999994
Q ss_pred HHHhCCCCCCCccEEEE
Q psy18035 66 IVVEMELKLSSIQYVVF 82 (104)
Q Consensus 66 l~~~~~~~l~~l~~lVl 82 (104)
... ..+++.+++++|-
T Consensus 378 iae-~GidIp~v~~VId 393 (773)
T 2xau_A 378 IAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HHH-HTCCCTTEEEEEE
T ss_pred HHH-hCcCcCCeEEEEe
Confidence 333 3567788887763
No 109
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=87.20 E-value=1.4 Score=31.31 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=39.7
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
+.+++|++| -|..+++.+++. ++++..++|.. .....+..+++ .+|+|+|. . -...+++. ++++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~-----v-~e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT-FEREYPTIKQKKPDFILATD-----I-AEMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS-CC--------CCCSEEEESS-----S-TTCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchh-HHHHHhhhcCCCceEEEECC-----h-hheeeccC-ceEE
Confidence 458999999 666666555543 67888888843 33334444444 89999994 3 23556777 8887
Q ss_pred E
Q psy18035 81 V 81 (104)
Q Consensus 81 V 81 (104)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 110
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=86.84 E-value=0.12 Score=31.78 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=41.1
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -+..+.+.+++. ++++..++|+++..+....+ +++ .+|+|+|. .+ ...+++.++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VA-ARGIDIPDV 99 (170)
Confidence 457899999 555555555443 57788888887755443333 333 78999993 22 233445555
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 100 ~~Vi~ 104 (170)
T 2yjt_D 100 SHVFN 104 (170)
Confidence 55554
No 111
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=86.42 E-value=0.33 Score=36.31 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=31.7
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGD 40 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~ 40 (104)
+++++|++| ++.|+.+.++.+.+..++++..+.|+.
T Consensus 51 ~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~gr~ 89 (620)
T 4a15_A 51 KLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRV 89 (620)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEECCC
Confidence 579999999 999999999999887788888887754
No 112
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=85.90 E-value=1.2 Score=29.19 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=20.6
Q ss_pred CcHHHHHHHHhCCCCCCCccEEEEch
Q psy18035 59 TPGRFLHIVVEMELKLSSIQYVVFDE 84 (104)
Q Consensus 59 TP~~l~~l~~~~~~~l~~l~~lVlDE 84 (104)
||..+.+.+.+..++++++.++-+||
T Consensus 45 tp~~~y~~L~~~~i~w~~v~~f~~DE 70 (232)
T 3lhi_A 45 SPIAFFNALSQKDLDWKNVGITLADE 70 (232)
T ss_dssp TTHHHHHHHHTSCCCGGGEEEEESEE
T ss_pred CHHHHHHHHHhcCCCchheEEEEeee
Confidence 56666666666778899999999999
No 113
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=85.69 E-value=1.4 Score=31.29 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=32.9
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC-CCcEEEeC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVAT 59 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlV~T 59 (104)
+.+++|++| -+..+++.+++. ++++..++|+.. .+..+..++ ..+|+|+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTH-HHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccH-HHHHHhhcCCCCeEEEEC
Confidence 347999999 555555555543 678888888743 333333343 48999999
No 114
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=85.41 E-value=2.1 Score=27.91 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=21.2
Q ss_pred CcHHHHHHHHhCCCCCCCccEEEEchh
Q psy18035 59 TPGRFLHIVVEMELKLSSIQYVVFDEA 85 (104)
Q Consensus 59 TP~~l~~l~~~~~~~l~~l~~lVlDEa 85 (104)
||..+.+.+.+..++.+++.++-+||-
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr 70 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADER 70 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeec
Confidence 566666666667888999999999993
No 115
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=85.32 E-value=4.3 Score=28.93 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=35.7
Q ss_pred ceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhh
Q psy18035 31 LQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVVFDEAD 86 (104)
Q Consensus 31 ~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD 86 (104)
.++..+.|+++..+.... ..++ .+|+|+|+..+. ..+++.+++++|+..++
T Consensus 372 ~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~-----~GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 372 DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS-----TGISVKNLHHVVLAHGV 426 (510)
T ss_dssp SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH-----HSCCCCSEEEEEESSCC
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh-----cccccccCcEEEEeCCC
Confidence 478888999876544332 2333 799999964332 35688899999987776
No 116
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=84.37 E-value=4.8 Score=30.47 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=41.5
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
+.++||++| -+..+++.+++ .++++..++|. ......+..+++ .+|+|+| +.+. ..+++. ++++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~----~g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQR----AGKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhh-cceeeC-CcEE
Confidence 458999999 44444444433 37888888884 333344444554 8999999 3333 455677 7776
Q ss_pred E
Q psy18035 81 V 81 (104)
Q Consensus 81 V 81 (104)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 117
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=84.03 E-value=2.1 Score=30.50 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=42.1
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEc--------CccHHHHHHH---hcC-C-CcEEEeCcHHHHHHHH
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLG--------GDSMDNQFAR---LHA-S-PDIVVATPGRFLHIVV 68 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g--------~~~~~~~~~~---l~~-~-~~IlV~TP~~l~~l~~ 68 (104)
+.++||.++ -+..+.+.++.......+++..++| +++..++... .++ + .+|+|+|. .-
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------~~ 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS------VA 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC------CT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc------hh
Confidence 478999999 7888888887765444455555555 5444433332 334 4 79999994 23
Q ss_pred hCCCCCCCccEEEE
Q psy18035 69 EMELKLSSIQYVVF 82 (104)
Q Consensus 69 ~~~~~l~~l~~lVl 82 (104)
...+++.+++++|.
T Consensus 463 ~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 463 DEGIDIAECNLVIL 476 (555)
T ss_dssp TCCEETTSCSEEEE
T ss_pred hcCCccccCCEEEE
Confidence 45678888888875
No 118
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=83.41 E-value=1.8 Score=28.44 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=20.9
Q ss_pred CcHHHHHHHHhCCCCCCCccEEEEch
Q psy18035 59 TPGRFLHIVVEMELKLSSIQYVVFDE 84 (104)
Q Consensus 59 TP~~l~~l~~~~~~~l~~l~~lVlDE 84 (104)
||..+.+.+.+..++.+++.++-+||
T Consensus 48 tp~~~y~~L~~~~idw~~v~~f~~DE 73 (233)
T 3nwp_A 48 TPLKLFQLLSMKSIDWSDVYITLADE 73 (233)
T ss_dssp TTHHHHHHHHHCCSCGGGEEEEESEE
T ss_pred CHHHHHHHHHhcCCChhHeEEEeCee
Confidence 56666666666788999999999999
No 119
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=83.34 E-value=0.4 Score=30.41 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=23.0
Q ss_pred CCCccEEEEchhhhh--hhcCcHHHHHhhhh
Q psy18035 74 LSSIQYVVFDEADRL--FEMGFDVEQQSPCD 102 (104)
Q Consensus 74 l~~l~~lVlDEaD~l--l~~gf~~~i~~i~~ 102 (104)
..+-+.+++||++.| .+..|.+.+..+++
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 456789999999988 55568888887775
No 120
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=81.73 E-value=4 Score=26.94 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=42.2
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~ 76 (104)
.+.++||.++ -+..+.+. .. ++..++|+.+..+..+.+ +++ .+|+|+|. .+ ...+++.+
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~-------l~-~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gid~~~ 284 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRL-------FD-NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VA-SRGLDIPL 284 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTT-------CT-TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HH-HTTCCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHH-------hh-hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----cc-ccCCCccC
Confidence 3457888888 44433332 22 466778888765544333 334 89999993 33 35678888
Q ss_pred ccEEEEch
Q psy18035 77 IQYVVFDE 84 (104)
Q Consensus 77 l~~lVlDE 84 (104)
++++|.-.
T Consensus 285 ~~~Vi~~~ 292 (337)
T 2z0m_A 285 VEKVINFD 292 (337)
T ss_dssp BSEEEESS
T ss_pred CCEEEEec
Confidence 99888643
No 121
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=81.58 E-value=0.96 Score=33.66 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=42.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHh--ccCCceEEEEEcC--------ccHHHHHHHh---cCC-CcEEEeCcHHHHHHH
Q psy18035 5 NINYLISFP---IVQQTFKFVKELG--KFTKLQSTCLLGG--------DSMDNQFARL---HAS-PDIVVATPGRFLHIV 67 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~--~~~~~~~~~~~g~--------~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~ 67 (104)
+.++||.++ .+..+.+.+++.. ...++++..++|+ ++..++...+ +++ .+|+|+|. .
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 578999999 7777777666431 1236888888888 7765554443 344 78999983 2
Q ss_pred HhCCCCCCCccEEE
Q psy18035 68 VEMELKLSSIQYVV 81 (104)
Q Consensus 68 ~~~~~~l~~l~~lV 81 (104)
-...+++.+++++|
T Consensus 474 ~~~GIDip~v~~VI 487 (699)
T 4gl2_A 474 AEEGLDIKECNIVI 487 (699)
T ss_dssp CCTTSCCCSCCCCE
T ss_pred cccCCccccCCEEE
Confidence 23455666666665
No 122
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=81.27 E-value=1.4 Score=32.75 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=38.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEc--------CccHHHHHHHh---cC-C-CcEEEeCcHHHHHHH
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLG--------GDSMDNQFARL---HA-S-PDIVVATPGRFLHIV 67 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g--------~~~~~~~~~~l---~~-~-~~IlV~TP~~l~~l~ 67 (104)
.+.++||.++ -+..+.+.+++......+++..++| +++..++.+.+ ++ + .+|+|+|. .
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------V 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------S
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------h
Confidence 4568999999 7777777777654444477777755 66554443333 33 3 78999993 2
Q ss_pred HhCCCCCCCccEEEE
Q psy18035 68 VEMELKLSSIQYVVF 82 (104)
Q Consensus 68 ~~~~~~l~~l~~lVl 82 (104)
-...+++.+++++|.
T Consensus 471 ~~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 471 ADEGIDIAQCNLVIL 485 (696)
T ss_dssp SCCC---CCCSEEEE
T ss_pred hhcCCcCccCCEEEE
Confidence 234677788888775
No 123
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=81.09 E-value=8 Score=29.35 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=45.9
Q ss_pred EEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHH---HHHHHhcC--C-CcEEEeCcHHHHHHHHhCCCCCCCccE
Q psy18035 9 LISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMD---NQFARLHA--S-PDIVVATPGRFLHIVVEMELKLSSIQY 79 (104)
Q Consensus 9 lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~---~~~~~l~~--~-~~IlV~TP~~l~~l~~~~~~~l~~l~~ 79 (104)
+|+++ -+.++.+.+++ .++++..++|+.+.. .+.+..++ + .+|+|+|- .+ ...+++ ++++
T Consensus 324 iIf~~s~~~ie~la~~L~~----~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~-e~GlDi-~v~~ 392 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEI----RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AI-GMGLNL-SIRR 392 (677)
T ss_dssp EEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GG-GSSCCC-CBSE
T ss_pred EEEEcCHHHHHHHHHHHHh----cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HH-HCCcCc-CccE
Confidence 45555 44444444443 367899999999876 45555554 3 79999994 33 456778 8999
Q ss_pred EEEchhhhh
Q psy18035 80 VVFDEADRL 88 (104)
Q Consensus 80 lVlDEaD~l 88 (104)
+|.-...+.
T Consensus 393 VI~~~~~k~ 401 (677)
T 3rc3_A 393 IIFYSLIKP 401 (677)
T ss_dssp EEESCSBC-
T ss_pred EEECCcccc
Confidence 988776543
No 124
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=79.88 E-value=1.4 Score=32.92 Aligned_cols=41 Identities=27% Similarity=0.371 Sum_probs=26.5
Q ss_pred cCCCcEEEeCcHHHHHHH-HhC-----CCCCCCccEEEEchhhhhhhc
Q psy18035 50 HASPDIVVATPGRFLHIV-VEM-----ELKLSSIQYVVFDEADRLFEM 91 (104)
Q Consensus 50 ~~~~~IlV~TP~~l~~l~-~~~-----~~~l~~l~~lVlDEaD~ll~~ 91 (104)
...+||||+.-.-+.+.. +.. .+. ..-..+|+||||.|-+.
T Consensus 173 ~~~ADvVV~ny~ylld~~~r~~~~~~~~i~-p~~~ivI~DEAHNL~d~ 219 (620)
T 4a15_A 173 LPDADIVIAPYAYFLNRSVAEKFLSHWGVS-RNQIVIILDEAHNLPDI 219 (620)
T ss_dssp GGGCSEEEEEHHHHTCHHHHHHHHHHHTCC-GGGEEEEETTGGGHHHH
T ss_pred hhcCCEEEeCchhhcCHHHHHHHHHhhccC-cCCeEEEEECCCchHHH
Confidence 346899999876655332 221 122 23458999999999654
No 125
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=78.83 E-value=6.1 Score=28.04 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=41.4
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
.++||.+| -|.++++.+++ .++++..++|... ....+..+++ .+|+|+| +.+ ...+++.+ +++|
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~----~g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT-----~v~-~~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSRKTF-DTEYPKTKLTDWDFVVTT-----DIS-EMGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHT----TTCCEEEECTTTH-HHHGGGGGSSCCSEEEEC-----GGG-GSSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHH----cCCeEEECCHHHH-HHHHHhhccCCceEEEEC-----CHH-HhCcCCCC-CEEE
Confidence 47899999 56665555543 3677777777655 3334444554 8999999 333 34566777 6655
No 126
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=76.53 E-value=2.3 Score=29.12 Aligned_cols=68 Identities=7% Similarity=0.122 Sum_probs=38.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -+..+++.++ ..++++..++|+.+..++... .+++ .+|+|+|. . -...+++.++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~v 349 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMH----ARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----L-LARGIDVQQV 349 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHH----TTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----S-CC--CCGGGC
T ss_pred CCcEEEEeCCHHHHHHHHHHHH----hcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-cccCCCccCC
Confidence 347899999 5555555444 346788888999876554433 3344 78999994 2 2345666777
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 350 ~~Vi~ 354 (414)
T 3eiq_A 350 SLVIN 354 (414)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 77664
No 127
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=75.97 E-value=4 Score=26.99 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=18.0
Q ss_pred CcHHHHHHHHh--CCCCCCCccEEEEchh
Q psy18035 59 TPGRFLHIVVE--MELKLSSIQYVVFDEA 85 (104)
Q Consensus 59 TP~~l~~l~~~--~~~~l~~l~~lVlDEa 85 (104)
||..+.+.+.+ ..++++++.++-+||-
T Consensus 50 tP~~~y~~L~~~~~~idw~~v~~f~~DEr 78 (251)
T 3tx2_A 50 TGIALLKHLRDVASGLDWTNVHVFWGDDR 78 (251)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEEESEEE
T ss_pred hHHHHHHHHHhhccCCCCceeEEEeeeec
Confidence 34444444443 6788888888888884
No 128
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=75.82 E-value=2.2 Score=28.63 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=18.2
Q ss_pred CcHHHHHHHHh--CCCCCCCccEEEEchh
Q psy18035 59 TPGRFLHIVVE--MELKLSSIQYVVFDEA 85 (104)
Q Consensus 59 TP~~l~~l~~~--~~~~l~~l~~lVlDEa 85 (104)
||..+.+.+.+ ..++++++.++-+||-
T Consensus 66 tP~~~y~~L~~~~~~idw~~v~~f~~DEr 94 (268)
T 3ico_A 66 NGIALLRYLSAQAQQIEWSKVHLFWGDER 94 (268)
T ss_dssp HHHHHHHHHHHHGGGSCGGGEEEEESEEE
T ss_pred chhHHHHHHHHHhhhhhheeeEEeecccc
Confidence 34444444444 6778888888888884
No 129
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=75.82 E-value=6.2 Score=31.06 Aligned_cols=74 Identities=8% Similarity=0.073 Sum_probs=48.8
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHH---HHhcCC---CcEEEeCcHHHHHHHHhCCCCC
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHAS---PDIVVATPGRFLHIVVEMELKL 74 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~---~~l~~~---~~IlV~TP~~l~~l~~~~~~~l 74 (104)
.+-+++|+++ -+..+.+.++ ...++++..++|+++..+.. +..+++ .+|+|+|. +-...+++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~---~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~------v~~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLR---EREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE------IGSEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHH---TTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC------CTTCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHH---HHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc------hhhcCCCc
Confidence 3568889999 4444444333 34478899999998754433 333444 89999993 13456788
Q ss_pred CCccEEEEchhh
Q psy18035 75 SSIQYVVFDEAD 86 (104)
Q Consensus 75 ~~l~~lVlDEaD 86 (104)
.++.++|+-+.+
T Consensus 573 ~~~~~VI~~d~p 584 (968)
T 3dmq_A 573 QFASHMVMFDLP 584 (968)
T ss_dssp TTCCEEECSSCC
T ss_pred ccCcEEEEecCC
Confidence 888888875544
No 130
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=75.41 E-value=14 Score=27.60 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=30.9
Q ss_pred eEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEEE
Q psy18035 32 QSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSIQYVVF 82 (104)
Q Consensus 32 ~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lVl 82 (104)
.+..++||.+..++.... .++ ..|+|+|. .+ ...+++..++++|-
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~-----~l-~~Gidip~~~~VI~ 362 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFRQRKIKVIVATP-----TL-AAGVNLPARTVIIG 362 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCSCEEEECG-----GG-GGSSCCCBSEEEEC
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCCCeEEEECh-----HH-hcccCCCceEEEEe
Confidence 478889998876654443 234 89999994 22 34667888888663
No 131
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=73.53 E-value=18 Score=24.38 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=36.8
Q ss_pred HHHHHhccCCceEEEEEcCccHH--HHHHHhc--------CCCcEEEeCcH-------HHHHHHHhCC-C-CCCCccEEE
Q psy18035 21 FVKELGKFTKLQSTCLLGGDSMD--NQFARLH--------ASPDIVVATPG-------RFLHIVVEME-L-KLSSIQYVV 81 (104)
Q Consensus 21 ~~~~l~~~~~~~~~~~~g~~~~~--~~~~~l~--------~~~~IlV~TP~-------~l~~l~~~~~-~-~l~~l~~lV 81 (104)
.++...+.-.....+++|-.... .-...+. ..++++.-.|. .+.++++.-. . ....-+.+|
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvvi 87 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVI 87 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEE
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEE
Confidence 34444333335567777754322 2222221 24677766543 1233333211 1 235689999
Q ss_pred Echhhhhhhc
Q psy18035 82 FDEADRLFEM 91 (104)
Q Consensus 82 lDEaD~ll~~ 91 (104)
+||||.|-..
T Consensus 88 Idead~lt~~ 97 (305)
T 2gno_A 88 VHDCERMTQQ 97 (305)
T ss_dssp ETTGGGBCHH
T ss_pred eccHHHhCHH
Confidence 9999998644
No 132
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=72.65 E-value=4.1 Score=26.90 Aligned_cols=27 Identities=30% Similarity=0.150 Sum_probs=17.5
Q ss_pred CcHHHHHHHHh--CCCCCCCccEEEEchh
Q psy18035 59 TPGRFLHIVVE--MELKLSSIQYVVFDEA 85 (104)
Q Consensus 59 TP~~l~~l~~~--~~~~l~~l~~lVlDEa 85 (104)
||..+.+.+.+ ..++.+++.++-+||-
T Consensus 50 tP~~~y~~L~~~~~~idw~~v~~f~~DEr 78 (248)
T 3oc6_A 50 TGIGLLKRVRERSGEIDWSKVHIYWGDER 78 (248)
T ss_dssp HHHHHHHHHHHTGGGSCGGGEEEEESEEE
T ss_pred cHHHHHHHHHhhccCCCcceEEEEEeeec
Confidence 34444444443 5678888888888884
No 133
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.53 E-value=3.2 Score=29.62 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=30.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEE--------cCccHHHHHHH---hcC-C-CcEEEeCcHHHHHHH
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLL--------GGDSMDNQFAR---LHA-S-PDIVVATPGRFLHIV 67 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~--------g~~~~~~~~~~---l~~-~-~~IlV~TP~~l~~l~ 67 (104)
.+.++||.++ -+..+.+.+++......+++..+. |+++..++... .++ + .+|+|+|. .
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~- 462 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V- 462 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----c-
Confidence 4578999999 666666666554222234444443 44544433333 334 4 78999994 2
Q ss_pred HhCCCCCCCccEEEE
Q psy18035 68 VEMELKLSSIQYVVF 82 (104)
Q Consensus 68 ~~~~~~l~~l~~lVl 82 (104)
-...+++.+++++|.
T Consensus 463 ~~~GiDip~v~~VI~ 477 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVL 477 (556)
T ss_dssp ----------CEEEE
T ss_pred hhcCCCchhCCEEEE
Confidence 234567888888875
No 134
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=72.29 E-value=7.8 Score=24.14 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=37.3
Q ss_pred HHHHHHHHHhccCCceEEEEEcCcc--HHHHHHHh-----cCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 17 QTFKFVKELGKFTKLQSTCLLGGDS--MDNQFARL-----HASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 17 Qi~~~~~~l~~~~~~~~~~~~g~~~--~~~~~~~l-----~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
++.+.++.+.....-+..+++|... ...-...+ ..+..++..+...+...+....-.+..-..+++||+|.+.
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~ 117 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVA 117 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGT
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCEEEEecccccc
Confidence 3444555555443456677777433 22222221 1234555554444332221111123556799999999986
Q ss_pred hc
Q psy18035 90 EM 91 (104)
Q Consensus 90 ~~ 91 (104)
..
T Consensus 118 ~~ 119 (242)
T 3bos_A 118 GH 119 (242)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 135
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=72.05 E-value=11 Score=26.15 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhccCC--ceEEEEEcCcc---HHHHHHHh-cCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEch
Q psy18035 16 QQTFKFVKELGKFTK--LQSTCLLGGDS---MDNQFARL-HASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDE 84 (104)
Q Consensus 16 ~Qi~~~~~~l~~~~~--~~~~~~~g~~~---~~~~~~~l-~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDE 84 (104)
....+-+++..+..+ +.....-.... ..+.++.+ .+++++||+|...+.+.+.+-.-.+.+++++++|.
T Consensus 44 ~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~id~ 118 (356)
T 3s99_A 44 YQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHATG 118 (356)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEESC
T ss_pred HHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 445566666665555 66544433222 22223333 36799999998777766654333455777887764
No 136
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=71.25 E-value=17 Score=25.82 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=36.8
Q ss_pred HHHHHhccCC-ceEEEEEcCccH--HHHHHHhc-------CCCcEEEeCcHHHHH-HH---HhCCC-----CCC-CccEE
Q psy18035 21 FVKELGKFTK-LQSTCLLGGDSM--DNQFARLH-------ASPDIVVATPGRFLH-IV---VEMEL-----KLS-SIQYV 80 (104)
Q Consensus 21 ~~~~l~~~~~-~~~~~~~g~~~~--~~~~~~l~-------~~~~IlV~TP~~l~~-l~---~~~~~-----~l~-~l~~l 80 (104)
.+..++...+ ....+++|.... ..-...+. .+..++.-+...+.. +. ..+.. .+. ....+
T Consensus 119 ~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 198 (440)
T 2z4s_A 119 AALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDIL 198 (440)
T ss_dssp HHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEE
T ss_pred HHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEE
Confidence 4444544433 667788885442 22222221 144555555544432 22 22211 123 67799
Q ss_pred EEchhhhhhhc
Q psy18035 81 VFDEADRLFEM 91 (104)
Q Consensus 81 VlDEaD~ll~~ 91 (104)
++||+|.+.+.
T Consensus 199 ~IDEi~~l~~~ 209 (440)
T 2z4s_A 199 LIDDVQFLIGK 209 (440)
T ss_dssp EEECGGGGSSC
T ss_pred EEeCcccccCC
Confidence 99999999853
No 137
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=69.59 E-value=8.4 Score=26.55 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=41.9
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEE-EEEcCccHHHHHHHhcCC-CcEEEe----CcHHHHHHHHhCCCCCCC
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQST-CLLGGDSMDNQFARLHAS-PDIVVA----TPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~-~~~g~~~~~~~~~~l~~~-~~IlV~----TP~~l~~l~~~~~~~l~~ 76 (104)
.++||.++ -|..+.+.+++. ++++. .++|. ..+ .+..+++ .+|+|+ |. +-...+++.+
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~--~r~-~~~f~~g~~~vLvat~s~T~------~~~~GiDip~ 319 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYG------KLTRGVDLPE 319 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCH--HHH-HHHHHTTSCSEEEEECCTTC------CCCCCCCCTT
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCc--chH-HHHHhCCCCeEEEEecCcCc------hhhccCcccc
Confidence 57899999 666666666543 56666 44443 222 5555555 899999 73 2234678888
Q ss_pred -ccEEEE
Q psy18035 77 -IQYVVF 82 (104)
Q Consensus 77 -l~~lVl 82 (104)
++++|.
T Consensus 320 ~v~~VI~ 326 (414)
T 3oiy_A 320 RIKYVIF 326 (414)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 888874
No 138
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=69.56 E-value=7.4 Score=25.39 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=14.1
Q ss_pred CcHHHHHHHHhCCCCCCCccEEEEch
Q psy18035 59 TPGRFLHIVVEMELKLSSIQYVVFDE 84 (104)
Q Consensus 59 TP~~l~~l~~~~~~~l~~l~~lVlDE 84 (104)
||..+.+.+.+..++.+++.++-+||
T Consensus 56 Tp~~ly~~L~~~~i~w~~v~~f~~DE 81 (232)
T 1vl1_A 56 TPLPVYEKLAEQKFPWNRIHFFLSDE 81 (232)
T ss_dssp THHHHHHHHTTSCCCGGGEEEEESEE
T ss_pred cHHHHHHHHHHcCCChhHEEEEeCeE
Confidence 34444444444445566666666666
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=69.54 E-value=4.6 Score=24.05 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=11.6
Q ss_pred ccEEEEchhhhhhh
Q psy18035 77 IQYVVFDEADRLFE 90 (104)
Q Consensus 77 l~~lVlDEaD~ll~ 90 (104)
-..+++||+|.+..
T Consensus 116 ~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 116 NVILFIDELHTMVG 129 (195)
T ss_dssp TEEEEEETGGGGTT
T ss_pred CeEEEEeCHHHHhc
Confidence 34899999999973
No 140
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=69.08 E-value=2.1 Score=29.72 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=19.1
Q ss_pred CCccEEEEchhhhhhhc---CcHHHHHhhhh
Q psy18035 75 SSIQYVVFDEADRLFEM---GFDVEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~---gf~~~i~~i~~ 102 (104)
..-.++++|||+.+++. .+.+.+..+++
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~ 291 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSK 291 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHH
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHH
Confidence 34568999999999963 24455555544
No 141
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=68.79 E-value=1 Score=32.00 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
..+++|.+| -+..+++.++. .+..+..++|+.+..+....+ +++ .+|+|||. .+ ...+++.++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~----~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~-~~GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSK----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHh----CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----cc-ccCCccccC
Confidence 457888999 55555554443 356778888887765443333 333 78999993 33 345667777
Q ss_pred cEEE
Q psy18035 78 QYVV 81 (104)
Q Consensus 78 ~~lV 81 (104)
+++|
T Consensus 403 ~~VI 406 (479)
T 3fmp_B 403 SVVI 406 (479)
T ss_dssp ----
T ss_pred CEEE
Confidence 7766
No 142
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=68.63 E-value=5.6 Score=26.49 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.6
Q ss_pred CCCC-CCccEEEEchh
Q psy18035 71 ELKL-SSIQYVVFDEA 85 (104)
Q Consensus 71 ~~~l-~~l~~lVlDEa 85 (104)
.++. +++.++-+||-
T Consensus 62 ~idw~~~v~~f~~DEr 77 (266)
T 3eb9_A 62 LLREKRALRFFMGDER 77 (266)
T ss_dssp HHTTSCCEEEEESEEE
T ss_pred CCChHHcEEEEeeeee
Confidence 6778 99999999993
No 143
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=68.51 E-value=5.8 Score=30.25 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEE--------EcCccHHHHHHH---hcC-C-CcEEEeCcHHHHHHH
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCL--------LGGDSMDNQFAR---LHA-S-PDIVVATPGRFLHIV 67 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~--------~g~~~~~~~~~~---l~~-~-~~IlV~TP~~l~~l~ 67 (104)
.+.++||.++ .+..+.+.+++.....++++..+ .|+++..++... .++ + .+|+|+|- .
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~------~ 703 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS------V 703 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC------C
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC------c
Confidence 3578999999 77777777766432223443333 444554443333 334 4 79999994 2
Q ss_pred HhCCCCCCCccEEEEc
Q psy18035 68 VEMELKLSSIQYVVFD 83 (104)
Q Consensus 68 ~~~~~~l~~l~~lVlD 83 (104)
-...+++.+++++|.=
T Consensus 704 ~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLY 719 (797)
T ss_dssp -------CCCSEEEEE
T ss_pred hhcCCCchhCCEEEEe
Confidence 2346778888888753
No 144
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=68.11 E-value=18 Score=27.21 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=28.3
Q ss_pred eEEEEEcCccHHHHHHH---hcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 32 QSTCLLGGDSMDNQFAR---LHAS-PDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 32 ~~~~~~g~~~~~~~~~~---l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
.+...+||.+..++... .+++ .+|+|+|. .+ ...+++..++++|
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~-----~l-~~Gvdip~~~~VI 343 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGIIKAVVATP-----TL-SAGINTPAFRVII 343 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSSCEEEECS-----TT-GGGCCCCBSEEEE
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCeEEEECc-----Hh-hccCCCCceEEEE
Confidence 47888899887665433 2344 79999994 22 2345677776644
No 145
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=67.99 E-value=8.2 Score=30.22 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=37.1
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEE--------EcCccHHHHHHH---hcC-C-CcEEEeCcHHHHHHH
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCL--------LGGDSMDNQFAR---LHA-S-PDIVVATPGRFLHIV 67 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~--------~g~~~~~~~~~~---l~~-~-~~IlV~TP~~l~~l~ 67 (104)
.+.++||.++ .+..+.+.+++.....++++..+ +|+++..++... .++ + .+|+|+|- .
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~- 703 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V- 703 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----c-
Confidence 4578999999 88888887776533333444444 445554443333 334 4 79999993 2
Q ss_pred HhCCCCCCCccEEEEc
Q psy18035 68 VEMELKLSSIQYVVFD 83 (104)
Q Consensus 68 ~~~~~~l~~l~~lVlD 83 (104)
-...+++..++++|.=
T Consensus 704 ~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 704 ADEGIDIVQCNLVVLY 719 (936)
T ss_dssp ------CCCCSEEEEE
T ss_pred hhcCCcchhCCEEEEe
Confidence 2346778888888763
No 146
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=67.98 E-value=2.4 Score=27.03 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.7
Q ss_pred ccEEEEchhhhhhh
Q psy18035 77 IQYVVFDEADRLFE 90 (104)
Q Consensus 77 l~~lVlDEaD~ll~ 90 (104)
-..+|+||||.++.
T Consensus 88 ~~vliIDEAq~l~~ 101 (199)
T 2r2a_A 88 GSIVIVDEAQDVWP 101 (199)
T ss_dssp TCEEEETTGGGTSB
T ss_pred ceEEEEEChhhhcc
Confidence 44899999999964
No 147
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=67.72 E-value=3.8 Score=25.50 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=19.2
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
.+.+++++||++.+ +.++.+.+..+.+
T Consensus 75 ~~~dvviIDE~Q~~-~~~~~~~l~~l~~ 101 (184)
T 2orw_A 75 EDTRGVFIDEVQFF-NPSLFEVVKDLLD 101 (184)
T ss_dssp TTEEEEEECCGGGS-CTTHHHHHHHHHH
T ss_pred CCCCEEEEECcccC-CHHHHHHHHHHHH
Confidence 35789999999875 4456766665544
No 148
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=67.32 E-value=1.6 Score=33.74 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=48.6
Q ss_pred CCeeEEEehh-HH-------HHHHHHHHHHhc-c-CCceEEEEEcCccHH---HHHHHhcCC-CcEEEeCcHHHHHHHHh
Q psy18035 4 ANINYLISFP-IV-------QQTFKFVKELGK-F-TKLQSTCLLGGDSMD---NQFARLHAS-PDIVVATPGRFLHIVVE 69 (104)
Q Consensus 4 ~~~~~lil~P-La-------~Qi~~~~~~l~~-~-~~~~~~~~~g~~~~~---~~~~~l~~~-~~IlV~TP~~l~~l~~~ 69 (104)
++-+++|++| .. ..+.+..+.+.+ . .++++..++|+++.. ...+..+++ .+|+|+|. +-.
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~------vie 650 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT------VIE 650 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS------CCC
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC------CCC
Confidence 3567888888 21 123334444444 2 367888888987633 334444454 89999994 334
Q ss_pred CCCCCCCccEEEEchhhh
Q psy18035 70 MELKLSSIQYVVFDEADR 87 (104)
Q Consensus 70 ~~~~l~~l~~lVlDEaD~ 87 (104)
..+++.+++++|+..+++
T Consensus 651 ~GIDiP~v~~VIi~d~~r 668 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPER 668 (780)
T ss_dssp SCSCCTTCCEEEBCSCSS
T ss_pred ccccCCCCCEEEEeCCCC
Confidence 567899999999887775
No 149
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=66.84 E-value=12 Score=28.09 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=28.7
Q ss_pred eEEEEEcCccHHHHHHHh---cCC-CcEEEeCcHHHHHHHHhCCCCCCCccEEE
Q psy18035 32 QSTCLLGGDSMDNQFARL---HAS-PDIVVATPGRFLHIVVEMELKLSSIQYVV 81 (104)
Q Consensus 32 ~~~~~~g~~~~~~~~~~l---~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~lV 81 (104)
.+...+||.+..++.... .++ .+|+|+|. .-...+++..++++|
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~------~l~~Gidip~~~~VI 345 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATP------TLAAGVNLPARRVIV 345 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECS------TTTSSSCCCBSEEEE
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECc------HHhccCCCCceEEEE
Confidence 466788998876554433 334 79999995 223456777777654
No 150
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=66.25 E-value=22 Score=22.70 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=15.8
Q ss_pred CcHHHHHHHHhCCCCCCCccEEEEch
Q psy18035 59 TPGRFLHIVVEMELKLSSIQYVVFDE 84 (104)
Q Consensus 59 TP~~l~~l~~~~~~~l~~l~~lVlDE 84 (104)
||..+.+.+....++.+++.++-+||
T Consensus 39 T~~~~~~~L~~~~~~~~~v~v~~ldE 64 (234)
T 2ri0_A 39 TPLELYKEIRESHLDFSDMVSINLDE 64 (234)
T ss_dssp TTHHHHHHHHTSCCCCTTCEEEESEE
T ss_pred CHHHHHHHHHhcCCChhheEEEeCee
Confidence 45555555544446667777777776
No 151
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=66.14 E-value=10 Score=24.67 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=8.7
Q ss_pred CCCCCccEEEEch
Q psy18035 72 LKLSSIQYVVFDE 84 (104)
Q Consensus 72 ~~l~~l~~lVlDE 84 (104)
++.+++.++-+||
T Consensus 57 ~~w~~v~~f~~DE 69 (238)
T 1y89_A 57 IQWKNLHFWWGDE 69 (238)
T ss_dssp SCGGGEEEEESEE
T ss_pred CChhHeEEEecee
Confidence 5666776666666
No 152
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=65.53 E-value=32 Score=25.02 Aligned_cols=75 Identities=8% Similarity=0.130 Sum_probs=45.0
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhc----cCCceEEEEEcCccH--HHHHHHhcCC----CcEEEeCcHHHHHHHHhCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGK----FTKLQSTCLLGGDSM--DNQFARLHAS----PDIVVATPGRFLHIVVEME 71 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~----~~~~~~~~~~g~~~~--~~~~~~l~~~----~~IlV~TP~~l~~l~~~~~ 71 (104)
+.++||+++ -|..+.+.+++... ..+-.+..++|.++. .+..+..+++ +-|+|+| +++ ...
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l-~~G 512 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLL-TTG 512 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STT-TTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chh-hcC
Confidence 468999999 67777777766532 122235556676653 2333334443 3388887 333 345
Q ss_pred CCCCCccEEEEchh
Q psy18035 72 LKLSSIQYVVFDEA 85 (104)
Q Consensus 72 ~~l~~l~~lVlDEa 85 (104)
+++.+++++|++..
T Consensus 513 iDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 513 VDAPTCKNVVLARV 526 (590)
T ss_dssp CCCTTEEEEEEESC
T ss_pred ccchheeEEEEEec
Confidence 67888888887543
No 153
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=65.14 E-value=11 Score=28.12 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=39.2
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC-CCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
.++||.++ -|..+++.+++. ++++..++|.. ..+..+..++ ..+|+|+|. .+. ..+++. ++++
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~-R~~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~V 422 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKT-FDTEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGRV 422 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTT-HHHHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHH-HHHHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceEE
Confidence 47899999 666666655543 57788888753 3333334444 489999994 333 445554 6665
No 154
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=64.88 E-value=7.8 Score=29.46 Aligned_cols=64 Identities=13% Similarity=0.024 Sum_probs=42.3
Q ss_pred CCeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 4 ANINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 4 ~~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
++-++||.+| -+.++++.+++ .++++..++|+.+..+. -+.+.+|+|+| +.+..+ +++. ++++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCCC-CcEE
Confidence 3458999999 55555554443 46889999999876542 23447999999 444433 3454 7776
Q ss_pred E
Q psy18035 81 V 81 (104)
Q Consensus 81 V 81 (104)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 155
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=64.50 E-value=2.5 Score=30.46 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=38.3
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHH---HHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDN---QFARLHAS-PDIVVATPGRFLHIVVEMELKLSSI 77 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~---~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l 77 (104)
+.++||.++ -|..+.+.+++ .+.++..++|+.+..+ ..+..+++ .+|+|+|. .+ ...+++.++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l-~~GiDip~v 426 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VI-ARGIDVSQV 426 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTC
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hh-hcCCCccCC
Confidence 457899999 55555544433 4677788888876433 22333444 78999994 22 346678888
Q ss_pred cEEEE
Q psy18035 78 QYVVF 82 (104)
Q Consensus 78 ~~lVl 82 (104)
+++|.
T Consensus 427 ~~VI~ 431 (508)
T 3fho_A 427 NLVVN 431 (508)
T ss_dssp CEEEC
T ss_pred CEEEE
Confidence 88874
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=62.43 E-value=3.2 Score=30.29 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=12.3
Q ss_pred CCccEEEEchhhhh
Q psy18035 75 SSIQYVVFDEADRL 88 (104)
Q Consensus 75 ~~l~~lVlDEaD~l 88 (104)
..++++|+|||++|
T Consensus 413 ~~~rlvvlDEA~km 426 (483)
T 3euj_A 413 LPCRLLFLDQAARL 426 (483)
T ss_dssp CCCCEEEESSGGGS
T ss_pred CceeEEEEeccccC
Confidence 58999999999666
No 157
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=59.57 E-value=67 Score=25.76 Aligned_cols=34 Identities=12% Similarity=0.324 Sum_probs=24.5
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhc--------cCCceEEEEEc
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGK--------FTKLQSTCLLG 38 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~--------~~~~~~~~~~g 38 (104)
+.+|+|+|+ -|...++.++++.. ..++++.+++.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s 581 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFS 581 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEe
Confidence 468999999 88888888888762 23466655543
No 158
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=57.39 E-value=6.8 Score=27.90 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=37.9
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCCCCCCccEE
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYV 80 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~TP~~l~~l~~~~~~~l~~l~~l 80 (104)
+.++||.+| -+..+++.+++. ++++..+.|.. ........+++ .+|+|+|. .+. ..+++.+ +++
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT~-----v~~-~GiDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITTD-----ISE-MGANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC-CCCCGGGSSSCCCSEEEESS-----CC----CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH-HHHHHhhccCCCceEEEECC-----hHH-hCeecCC-CEE
Confidence 357899999 666666665543 67777777742 22222333444 79999993 222 3456666 554
Q ss_pred E
Q psy18035 81 V 81 (104)
Q Consensus 81 V 81 (104)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 4
No 159
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=56.35 E-value=11 Score=22.40 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=11.3
Q ss_pred ccEEEEchhhhhh
Q psy18035 77 IQYVVFDEADRLF 89 (104)
Q Consensus 77 l~~lVlDEaD~ll 89 (104)
-..+++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 3589999999997
No 160
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=55.70 E-value=3.3 Score=24.85 Aligned_cols=26 Identities=15% Similarity=0.127 Sum_probs=17.3
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
.+.+.+++||.+.+.... .+.+..++
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li 107 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIF 107 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHH
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHH
Confidence 457899999999854433 44554444
No 161
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=55.31 E-value=19 Score=28.64 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=42.4
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCC-CcEEEe----CcHHHHHHHHhCCCCCCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVA----TPGRFLHIVVEMELKLSS 76 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlV~----TP~~l~~l~~~~~~~l~~ 76 (104)
+.++||.++ -|..+.+ .|.+. +++..++|+.. ...+..++| .+|+|+ | +.+. ..+++.+
T Consensus 275 ~~~~LVF~~t~~~a~~l~~---~L~~~--~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~T-----dv~~-rGIDip~ 341 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYE---SLKNK--FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHYY-----GTLV-RGLDLPE 341 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHH---TTTTS--SCEEECTTSSS--HHHHHHHHTSCSEEEEECC------------CCSCCTT
T ss_pred CCCEEEEEcCHHHHHHHHH---HHhhc--cCeeEEeccHH--HHHHHHHcCCCcEEEEecCCC-----CeeE-eccccCC
Confidence 467899999 4444443 33333 78888888874 333334444 899999 6 3333 4778899
Q ss_pred c-cEEEEchhh
Q psy18035 77 I-QYVVFDEAD 86 (104)
Q Consensus 77 l-~~lVlDEaD 86 (104)
+ +++|.-...
T Consensus 342 VI~~VI~~~~P 352 (1054)
T 1gku_B 342 RIRFAVFVGCP 352 (1054)
T ss_dssp TCCEEEEESCC
T ss_pred cccEEEEeCCC
Confidence 5 888765444
No 162
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=54.47 E-value=38 Score=21.63 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=15.4
Q ss_pred CcHHHHHHHH----hCCCCCCCccEEEEch
Q psy18035 59 TPGRFLHIVV----EMELKLSSIQYVVFDE 84 (104)
Q Consensus 59 TP~~l~~l~~----~~~~~l~~l~~lVlDE 84 (104)
||..+.+.+. ...++.+++.++-+||
T Consensus 39 T~~~~~~~L~~~~~~~~~~~~~v~v~~lde 68 (242)
T 2bkx_A 39 TPEGTYRQLIRLHQTENLSFQNITTVNLDE 68 (242)
T ss_dssp TTHHHHHHHHHHHHHSCCCCTTCEEEESEE
T ss_pred CHHHHHHHHHHHhhccCCChhheEEEeCcc
Confidence 4444444443 3456677777777777
No 163
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=51.53 E-value=32 Score=19.60 Aligned_cols=48 Identities=2% Similarity=0.124 Sum_probs=27.1
Q ss_pred CeeEEEehh--------HHHHHHHHHHHHhccCCceEEEE-EcCccHHHHHHHhcCCCcEEEeCc
Q psy18035 5 NINYLISFP--------IVQQTFKFVKELGKFTKLQSTCL-LGGDSMDNQFARLHASPDIVVATP 60 (104)
Q Consensus 5 ~~~~lil~P--------La~Qi~~~~~~l~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~IlV~TP 60 (104)
..+++++|+ |+.++.+.+++. ++.+.+- .+-..... .....|++++||
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~----gi~~~V~~~~~~~~~~----~~~~~DlIist~ 77 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSH----NIPVELIQCRVNEIET----YMDGVHLICTTA 77 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHT----TCCEEEEEECTTTTTT----STTSCSEEEESS
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHc----CCeEEEEEecHHHHhh----ccCCCCEEEECC
Confidence 357899999 566666666653 3332222 22222211 124689999998
No 164
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=50.69 E-value=10 Score=25.69 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=18.8
Q ss_pred CcHHHHHHH----HhCCCCCCCccEEEEch
Q psy18035 59 TPGRFLHIV----VEMELKLSSIQYVVFDE 84 (104)
Q Consensus 59 TP~~l~~l~----~~~~~~l~~l~~lVlDE 84 (104)
||..+.+.+ +.+.++.+++.++-+||
T Consensus 65 TP~~~y~~L~~~~~~~~idw~~v~~f~~DE 94 (289)
T 3hn6_A 65 SPIGMYKNLIELNKNKKISFQNVITFNMDE 94 (289)
T ss_dssp TTHHHHHHHHHHHHTTSCCCTTEEEEESEE
T ss_pred cHHHHHHHHHHhHhhcCCCchheEEEeCcc
Confidence 454444433 34778999999999999
No 165
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=50.16 E-value=23 Score=28.45 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=44.4
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEE-EEEcCccHHHHHHHhcCC-CcEEEe----CcHHHHHHHHhCCCCCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQST-CLLGGDSMDNQFARLHAS-PDIVVA----TPGRFLHIVVEMELKLS 75 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~-~~~g~~~~~~~~~~l~~~-~~IlV~----TP~~l~~l~~~~~~~l~ 75 (104)
+.++||.+| -+..+.+.++.. ++++. .++|. ..+ .+..+++ .+|+|+ | +.+ ...+++.
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~~~~~lhg~--rr~-l~~F~~G~~~VLVatas~T-----dvl-arGIDip 375 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYY-----GKL-TRGVDLP 375 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHT----TCCEEESSSSH--HHH-HHHHHHTSCSEEEEETTTH-----HHH-CCSCCCT
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCeeeEecCc--HHH-HHHHHCCCCCEEEEecCCC-----Cee-EecCcCC
Confidence 367899999 677666666653 56666 55552 333 5555555 899999 7 433 4567888
Q ss_pred C-ccEEEEch
Q psy18035 76 S-IQYVVFDE 84 (104)
Q Consensus 76 ~-l~~lVlDE 84 (104)
+ ++++|.=.
T Consensus 376 ~~V~~VI~~d 385 (1104)
T 4ddu_A 376 ERIKYVIFWG 385 (1104)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEEC
Confidence 8 88887644
No 166
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.17 E-value=5.4 Score=26.87 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=17.4
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
.+-+.+++||+|. ++......+.+++
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~l 158 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTM 158 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHH
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHH
Confidence 4677999999999 5554444555444
No 167
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=49.00 E-value=38 Score=22.40 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=33.3
Q ss_pred HHHHHhccCCceEEEEEcCccHHHHHHHhc---CCCcEEEeCcHHHHHHHHhCCC
Q psy18035 21 FVKELGKFTKLQSTCLLGGDSMDNQFARLH---ASPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 21 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~IlV~TP~~l~~l~~~~~~ 72 (104)
.++.|.+.+++++.....+.+.. ...++. .++||++.+...+..+.+.+.+
T Consensus 26 ~i~~Fek~tGIkV~~~~~~s~e~-~~~kl~ag~~~~DVv~~~~~~~~~~~~~gll 79 (333)
T 4gl0_A 26 LITKFEKETGIKVIYQTFDSNEA-MMTKIEQGGTTFDIAVPSDYAISKMKEENLL 79 (333)
T ss_dssp HHHHHHHHHCCEEEEEEESCHHH-HHHHHHTCSSCCSEECCBHHHHHHHHHTTCB
T ss_pred HHHHHHHHHCCEEEEEeCCCHHH-HHHHHHcCCCCCeEEEeCHHHHHHHHHcCCc
Confidence 34555566788888776555422 222333 2489999888888888887764
No 168
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=48.58 E-value=35 Score=19.25 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=25.6
Q ss_pred eeEEEehh--------HHHHHHHHHHHHhccCCce-EEEEEcCccHHHHHHHhcCCCcEEEeCcH
Q psy18035 6 INYLISFP--------IVQQTFKFVKELGKFTKLQ-STCLLGGDSMDNQFARLHASPDIVVATPG 61 (104)
Q Consensus 6 ~~~lil~P--------La~Qi~~~~~~l~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~IlV~TP~ 61 (104)
.+++++|+ ++..+.+.+++ .++. +.+-.. +..+-... ....|+++.||.
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~----~gi~~~~i~~~--~~~~~~~~-~~~~DlIi~t~~ 76 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQ----LGVSDIESASC--SVGEAKGL-ASNYDIVVASNH 76 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHH----TTCCCEEEEEE--CHHHHHHH-GGGCSEEEEETT
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHH----cCCCeEEEEEe--eHHHHhhc-cCCCcEEEECCc
Confidence 46889999 33355555544 3343 322222 22221112 346899999983
No 169
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=46.00 E-value=4.5 Score=26.35 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=17.6
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
.+.+.+++||||.-.....++.++.+++
T Consensus 102 ~~~kIiiLDEad~~~~~~~d~~lrn~ld 129 (212)
T 1tue_A 102 TDTKVAMLDDATTTCWTYFDTYMRNALD 129 (212)
T ss_dssp TTCSSEEEEEECHHHHHHHHHHCHHHHH
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHHhC
Confidence 4678999999985432223445555544
No 170
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=45.91 E-value=53 Score=20.57 Aligned_cols=58 Identities=7% Similarity=0.004 Sum_probs=34.5
Q ss_pred eeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHH-HHHHHhcCCCcEEEeCcHHHHHHHH
Q psy18035 6 INYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMD-NQFARLHASPDIVVATPGRFLHIVV 68 (104)
Q Consensus 6 ~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~IlV~TP~~l~~l~~ 68 (104)
.+.++++| |...+.+.+.++. .......++.... +..+.+..++|++|+--|. ..+++
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~----~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgt-a~~lr 66 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKN----FIPITKTASLTRASKIAFGLQDEVDAIISRGAT-SDYIK 66 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHT----CEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHH-HHHHH
T ss_pred CcEEEEEccHHHHHHHHHHHhhhC----CceEEEECCHHHHHHHHHHhcCCCeEEEECChH-HHHHH
Confidence 57788888 7776666666543 2455566665422 3333335579998887444 34444
No 171
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Probab=44.85 E-value=69 Score=22.87 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=35.2
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHHH-HhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQFA-RLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~-~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+.+.++++.+.+++++.....+ +....+. .+.. .|||+...+..+..+...+.+
T Consensus 24 l~ei~~~Fek~~gIkV~~~~~~-~~~~kl~t~~asG~~PDV~~~~~~~~~~~~~~G~L 80 (487)
T 4exk_A 24 LAEVGKKFEKDTGIKVTVEHPD-KLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 80 (487)
T ss_dssp HHHHHHHHHHHHCCEEEEECCT-THHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCB
T ss_pred HHHHHHHhhhccCcEEEEEeCC-CHHHHHHHHHhCCCCCeEEEECcHHHHHHHHCCCc
Confidence 4455666666778888766544 3333333 3333 399999888888888887764
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=43.65 E-value=11 Score=24.42 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=10.8
Q ss_pred cEEEEchhhhhh
Q psy18035 78 QYVVFDEADRLF 89 (104)
Q Consensus 78 ~~lVlDEaD~ll 89 (104)
..+++||+|.+.
T Consensus 112 ~vl~iDEid~l~ 123 (285)
T 3h4m_A 112 SIIFIDEIDAIA 123 (285)
T ss_dssp EEEEEETTHHHH
T ss_pred eEEEEECHHHhc
Confidence 589999999996
No 173
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=43.60 E-value=22 Score=23.86 Aligned_cols=16 Identities=38% Similarity=0.401 Sum_probs=13.0
Q ss_pred CccEEEEchhhhhhhc
Q psy18035 76 SIQYVVFDEADRLFEM 91 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~ 91 (104)
.-..+++||+|.+...
T Consensus 130 ~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKR 145 (387)
T ss_dssp SEEEEEEETTTHHHHS
T ss_pred CeEEEEEccHhhhccc
Confidence 3458999999999765
No 174
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=42.94 E-value=12 Score=23.86 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.8
Q ss_pred CCCccEEEEchhhhhh
Q psy18035 74 LSSIQYVVFDEADRLF 89 (104)
Q Consensus 74 l~~l~~lVlDEaD~ll 89 (104)
|++=..+|+|||-+|-
T Consensus 119 ~tp~s~lIVD~AekLS 134 (189)
T 2l8b_A 119 FTPGSTVIVDQGEKLS 134 (189)
T ss_dssp CCCCCEEEEEESSSHH
T ss_pred CCCCCEEEEechhhcC
Confidence 4566689999999884
No 175
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=42.64 E-value=9.1 Score=25.94 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.0
Q ss_pred CCccEEEEchhhhhhhc
Q psy18035 75 SSIQYVVFDEADRLFEM 91 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~ 91 (104)
..-+.+|+||||.|-..
T Consensus 107 ~~~kvviIdead~l~~~ 123 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDA 123 (334)
T ss_dssp SSCEEEEESCGGGBCHH
T ss_pred CCcEEEEECchhhcCHH
Confidence 56789999999998643
No 176
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=42.09 E-value=53 Score=24.11 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHH-HHhc--CCCcEEEeCcHHHHHHHHhCCC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQF-ARLH--ASPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~-~~l~--~~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+.+.++++.+.+++++.....+ +....+ ..+. +.|||+...+..+..+...+.+
T Consensus 34 l~e~~~~Fek~~gIkV~~~~~~-~~~~kl~~~~asG~~PDV~~~~~~~~~~~~~~G~L 90 (602)
T 4b3n_A 34 LAEVGKKFEKDTGIKVTVEHPD-KLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 90 (602)
T ss_dssp HHHHHHHHHHHHCCCEEEECCT-THHHHHHHHHHHTCSCSEEEEEGGGHHHHHHHTCB
T ss_pred HHHHHHHHhcccCCEEEEEeCC-CHHHHHHHHHhCCCCCeEEEEChHHHHHHHHCCCe
Confidence 4455666666678888766544 333222 2232 3499999988888888888764
No 177
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=41.92 E-value=10 Score=25.65 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=14.8
Q ss_pred ccEEEEchhhhhhhcCcHHHHHhh
Q psy18035 77 IQYVVFDEADRLFEMGFDVEQQSP 100 (104)
Q Consensus 77 l~~lVlDEaD~ll~~gf~~~i~~i 100 (104)
-..+++||+|.+ +......+..+
T Consensus 126 ~~vlilDE~~~l-~~~~~~~L~~~ 148 (389)
T 1fnn_A 126 YMFLVLDDAFNL-APDILSTFIRL 148 (389)
T ss_dssp CEEEEEETGGGS-CHHHHHHHHHH
T ss_pred eEEEEEECcccc-chHHHHHHHHH
Confidence 458999999998 43334444333
No 178
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=41.62 E-value=72 Score=20.85 Aligned_cols=68 Identities=9% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHHHHHhccCCceEEEEEcCccHHH---HHHHh-cCCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEch
Q psy18035 17 QTFKFVKELGKFTKLQSTCLLGGDSMDN---QFARL-HASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDE 84 (104)
Q Consensus 17 Qi~~~~~~l~~~~~~~~~~~~g~~~~~~---~~~~l-~~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDE 84 (104)
++.+-+++..+..++.+........... .++.+ ..+++.+|.++....+.+..-.-...++.++++|.
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~~~~~~~~~~~~~p~~p~v~id~ 95 (296)
T 2hqb_A 24 KAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFSTIHNQYPDVHFVSFNG 95 (296)
T ss_dssp HHHHHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHTTTTSCTTSEEEEESC
T ss_pred HHHHHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHhHHHHHHHHHHHCCCCEEEEEec
Confidence 4455556666666777655433222222 22333 35799999987665544433221233567777764
No 179
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=41.35 E-value=14 Score=22.79 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=20.2
Q ss_pred CCccEEEEch--hhhhhhcCcHHHHHhhhh
Q psy18035 75 SSIQYVVFDE--ADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDE--aD~ll~~gf~~~i~~i~~ 102 (104)
.+-+.+++|| .-..+|..+.+.+..+++
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 4567999999 445566667777777664
No 180
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=41.14 E-value=40 Score=22.24 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=10.0
Q ss_pred CCCCCCccEEEEchh
Q psy18035 71 ELKLSSIQYVVFDEA 85 (104)
Q Consensus 71 ~~~l~~l~~lVlDEa 85 (104)
.++.+++.++-+||-
T Consensus 63 ~i~w~~v~~f~~DEr 77 (267)
T 3css_A 63 LLQQHAVQFILGDER 77 (267)
T ss_dssp HHHTTCEEEEESEEE
T ss_pred CCChhHeEEEeeeee
Confidence 455677777777773
No 181
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=40.43 E-value=22 Score=26.39 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=22.2
Q ss_pred CCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 51 ASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
...+|+++|-.... ...+.-...+++|+|||.+..
T Consensus 318 ~~~~vI~~T~~~~~----~~~l~~~~fd~viIDEAsQ~~ 352 (624)
T 2gk6_A 318 MNADVICCTCVGAG----DPRLAKMQFRSILIDESTQAT 352 (624)
T ss_dssp HTCSEEEEETGGGG----CGGGTTCCCSEEEETTGGGSC
T ss_pred hcCCEEEEcChhhc----chhhhcCCCCEEEEecccccC
Confidence 35789999864322 112222467899999997654
No 182
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=40.23 E-value=25 Score=23.15 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=17.7
Q ss_pred cEEEEchhhhhhh---cCcHHHHHhhhh
Q psy18035 78 QYVVFDEADRLFE---MGFDVEQQSPCD 102 (104)
Q Consensus 78 ~~lVlDEaD~ll~---~gf~~~i~~i~~ 102 (104)
-.+|+||+|.+.+ ..+...+..+.+
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~ 166 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYD 166 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHH
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHH
Confidence 3789999999875 356666665543
No 183
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=40.14 E-value=31 Score=20.78 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.1
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
..-..+++||+|.+..
T Consensus 101 ~~~~vliiDe~~~l~~ 116 (226)
T 2chg_A 101 APFKIIFLDEADALTA 116 (226)
T ss_dssp CSCEEEEEETGGGSCH
T ss_pred cCceEEEEeChhhcCH
Confidence 5667999999999854
No 184
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=39.85 E-value=15 Score=24.33 Aligned_cols=13 Identities=46% Similarity=0.358 Sum_probs=11.0
Q ss_pred cEEEEchhhhhhh
Q psy18035 78 QYVVFDEADRLFE 90 (104)
Q Consensus 78 ~~lVlDEaD~ll~ 90 (104)
-.+|+||+|.+.+
T Consensus 130 ~vlvlDe~~~~~~ 142 (350)
T 2qen_A 130 FIVAFDEAQYLRF 142 (350)
T ss_dssp EEEEEETGGGGGG
T ss_pred EEEEEeCHHHHhc
Confidence 3789999999875
No 185
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=39.14 E-value=16 Score=24.62 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=12.1
Q ss_pred EEEEchhhhhhhcC
Q psy18035 79 YVVFDEADRLFEMG 92 (104)
Q Consensus 79 ~lVlDEaD~ll~~g 92 (104)
.+++||+|.+....
T Consensus 136 vlilDEi~~l~~~~ 149 (384)
T 2qby_B 136 IIYLDEVDTLVKRR 149 (384)
T ss_dssp EEEEETTHHHHHST
T ss_pred EEEEECHHHhccCC
Confidence 89999999998653
No 186
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=38.44 E-value=25 Score=22.85 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=12.6
Q ss_pred ccEEEEchhhhhhhc
Q psy18035 77 IQYVVFDEADRLFEM 91 (104)
Q Consensus 77 l~~lVlDEaD~ll~~ 91 (104)
-..+++||+|.+...
T Consensus 117 ~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 117 NGIVFIDEIDKICKK 131 (310)
T ss_dssp HCEEEEECGGGGSCC
T ss_pred CCEEEEEChhhcCcc
Confidence 568999999999754
No 187
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=38.18 E-value=11 Score=24.43 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=12.8
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
..-..+++||+|.|+.
T Consensus 123 ~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLD 138 (272)
T ss_dssp SSEEEEEECCHHHHTT
T ss_pred cCCcEEEEEChhhhhc
Confidence 3467999999999953
No 188
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=38.13 E-value=25 Score=14.61 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=11.1
Q ss_pred ehhHHHHHHHHHHHHh
Q psy18035 11 SFPIVQQTFKFVKELG 26 (104)
Q Consensus 11 l~PLa~Qi~~~~~~l~ 26 (104)
+.|++.|+...+..+.
T Consensus 3 ~~P~~e~ik~q~~~i~ 18 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLV 18 (26)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4677888877766654
No 189
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=37.49 E-value=68 Score=23.72 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=34.3
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHHH-Hhc--CCCcEEEeCcHHHHHHHHhCCC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQFA-RLH--ASPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~-~l~--~~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+.+.+++|.+.+++++.....+ +....+. .+. +.|||+...+..+..+...+.+
T Consensus 20 l~ei~~~Fek~~gIkV~~~~~~-~~~~kl~~~~asG~~PDV~~~~~~~~~~~~~~G~L 76 (637)
T 4dxb_A 20 LAEVGKKFEKDTGIKVTVEHPD-KLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 76 (637)
T ss_dssp HHHHHHHHHHHHSCCEEEECCT-THHHHHHHHHHHTCSCSEEEEEGGGHHHHHHTTCB
T ss_pred HHHHHHHHhhccCcEEEEEeCC-CHHHHHHHHHhcCCCCeEEEEChHHHHHHHHCCCE
Confidence 3445556656678888765444 3332222 222 3499999888888888887764
No 190
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=36.49 E-value=57 Score=18.24 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=38.5
Q ss_pred eeEEEehh-------HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcHHHH--HHHHhCCCCCCC
Q psy18035 6 INYLISFP-------IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL--HIVVEMELKLSS 76 (104)
Q Consensus 6 ~~~lil~P-------La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~~l~--~l~~~~~~~l~~ 76 (104)
.+++++|+ ++.++.+.+++..- .+.+ -.++-...... ....|+++.||.--. +-++... .-.+
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi--~~~i-~~~~~~~~~~~----~~~~D~Ii~t~~l~~~~~~~~~~~-~~~~ 76 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNI--NATI-EAIAETRLSEV----VDRFDVVLLAPQSRFNKKRLEEIT-KPKG 76 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTC--SEEE-EEECSTTHHHH----TTTCSEEEECSCCSSHHHHHHHHH-HHHT
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCC--CeEE-EEecHHHHHhh----cCCCCEEEECCccHHHHHHHHHHh-cccC
Confidence 56888888 77777777776532 2222 11222222221 346899999984211 1111000 0013
Q ss_pred ccEEEEchhhh
Q psy18035 77 IQYVVFDEADR 87 (104)
Q Consensus 77 l~~lVlDEaD~ 87 (104)
...++++-.+.
T Consensus 77 ~pv~~I~~~~y 87 (109)
T 2l2q_A 77 IPIEIINTIDY 87 (109)
T ss_dssp CCEEECCHHHH
T ss_pred CCEEEEChHHh
Confidence 56777777665
No 191
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=36.19 E-value=15 Score=24.08 Aligned_cols=13 Identities=31% Similarity=0.421 Sum_probs=11.1
Q ss_pred cEEEEchhhhhhh
Q psy18035 78 QYVVFDEADRLFE 90 (104)
Q Consensus 78 ~~lVlDEaD~ll~ 90 (104)
..+++||+|.+..
T Consensus 132 ~vl~iDEid~l~~ 144 (309)
T 3syl_A 132 GVLFIDEAYYLYR 144 (309)
T ss_dssp SEEEEETGGGSCC
T ss_pred CEEEEEChhhhcc
Confidence 4999999999863
No 192
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=35.98 E-value=1.1e+02 Score=23.18 Aligned_cols=55 Identities=18% Similarity=0.046 Sum_probs=34.5
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+.+.++++.+.+++++.....+.....-...+.. .|||+...+..+..+...+.+
T Consensus 21 l~eii~~Fek~~gIkV~v~~~~~~~~kl~t~~asG~~PDV~~~~~~~~~~~a~~G~L 77 (715)
T 4h1g_A 21 LAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 77 (715)
T ss_dssp HHHHHHHHHHHHCCEEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCB
T ss_pred HHHHHHHHhcCcCCEEEEEeCCCHHHHHHHHHhCCCCCeEEEEChHHHHHHHHCCCE
Confidence 3445556656678888766544322222223333 399999888888888887764
No 193
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=35.73 E-value=15 Score=22.54 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=11.3
Q ss_pred CccEEEEchhhhhh
Q psy18035 76 SIQYVVFDEADRLF 89 (104)
Q Consensus 76 ~l~~lVlDEaD~ll 89 (104)
.-..+++||+|.+-
T Consensus 126 ~~~vlviDe~~~l~ 139 (250)
T 1njg_A 126 RFKVYLIDEVHMLS 139 (250)
T ss_dssp SSEEEEEETGGGSC
T ss_pred CceEEEEECccccc
Confidence 34689999999974
No 194
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=34.83 E-value=13 Score=24.64 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=13.2
Q ss_pred CCccEEEEchhhhhh
Q psy18035 75 SSIQYVVFDEADRLF 89 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll 89 (104)
..-+.+++||+|.+-
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 477899999999986
No 195
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=34.76 E-value=16 Score=24.42 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.4
Q ss_pred ccEEEEchhhhhhhc
Q psy18035 77 IQYVVFDEADRLFEM 91 (104)
Q Consensus 77 l~~lVlDEaD~ll~~ 91 (104)
-..+++||+|.+.+.
T Consensus 129 ~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 129 QVVIVLDEIDAFVKK 143 (386)
T ss_dssp CEEEEEETHHHHHHS
T ss_pred eEEEEEcChhhhhcc
Confidence 458999999999854
No 196
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=34.32 E-value=15 Score=22.69 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=21.0
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPCD 102 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~~ 102 (104)
+.-+++++||.+.-||......+..+++
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~ 112 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIK 112 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHH
Confidence 4457999999999998866666655543
No 197
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=34.01 E-value=69 Score=18.43 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhccCCceEEEEEc--CccHHHHHHHhcCCC-cEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 16 QQTFKFVKELGKFTKLQSTCLLG--GDSMDNQFARLHASP-DIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 16 ~Qi~~~~~~l~~~~~~~~~~~~g--~~~~~~~~~~l~~~~-~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
.++.+.++.+++. + ...+++| |+....-.+.+.... ..+.-....+..-...+.+...+=..+++||.|.+-
T Consensus 14 ~~l~~~~~~~~~~-~-~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~lDei~~l~ 88 (143)
T 3co5_A 14 QEMNREVEAAAKR-T-SPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYS 88 (143)
T ss_dssp HHHHHHHHHHHTC-S-SCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHTTTSEEEEEECTTCC
T ss_pred HHHHHHHHHHhCC-C-CcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhCCCCeEEEeChHHCC
Confidence 4455555555432 2 2355565 344444444454332 233333222221111111111122578999999874
No 198
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=33.71 E-value=1e+02 Score=20.32 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=33.9
Q ss_pred CeeEEEehh------HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh----c--CCCcEEEeCc
Q psy18035 5 NINYLISFP------IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL----H--ASPDIVVATP 60 (104)
Q Consensus 5 ~~~~lil~P------La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l----~--~~~~IlV~TP 60 (104)
.++.-+++| --.++.+.+++.++..++++.....+.+...+.+.+ . .+++-+|.+|
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 455666777 234555666666666678887777666655444332 3 3788666655
No 199
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=33.28 E-value=5.7 Score=19.18 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=9.5
Q ss_pred EEchhhhhhhcCcHHHHH
Q psy18035 81 VFDEADRLFEMGFDVEQQ 98 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~ 98 (104)
++||.|.+|+.+-++-++
T Consensus 19 lLDeId~vLE~NAeeFV~ 36 (44)
T 3m91_B 19 LLDEIDDVLEENAEDFVR 36 (44)
T ss_dssp HHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 468888888766444443
No 200
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=32.99 E-value=42 Score=21.36 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=16.0
Q ss_pred CCccEEEEchhhhhhhcCc
Q psy18035 75 SSIQYVVFDEADRLFEMGF 93 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf 93 (104)
...+++|+||.-..+..|+
T Consensus 119 ~~yDlvILDEi~~al~~g~ 137 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDY 137 (196)
T ss_dssp TTCSEEEEETHHHHHHTTS
T ss_pred CCCCEEEEeCCCccccCCC
Confidence 6688999999988877775
No 201
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=32.57 E-value=88 Score=20.06 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=22.9
Q ss_pred cEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhh
Q psy18035 54 DIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRL 88 (104)
Q Consensus 54 ~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~l 88 (104)
.+-+.++..+.+.+....- -...+.+++|||..+
T Consensus 68 ~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 68 SVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp CEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred ccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 4556677777776664322 245789999999864
No 202
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=32.11 E-value=35 Score=22.24 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=13.0
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
..-+.+++||+|.+-.
T Consensus 109 ~~~~vliiDe~~~l~~ 124 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ 124 (327)
T ss_dssp CSCEEEEEETGGGSCH
T ss_pred CCCeEEEEeCCCcCCH
Confidence 4577999999999853
No 203
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=31.85 E-value=97 Score=19.47 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHH-HHHHHhcCCCcEEEeCcHH-HHHHHHhCCC
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMD-NQFARLHASPDIVVATPGR-FLHIVVEMEL 72 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~IlV~TP~~-l~~l~~~~~~ 72 (104)
+..-..+..+.|.+.+++++...+|++..- .++.. ...+||+++.... +..+.+.+.+
T Consensus 17 ~~~~~~~l~~~Fe~~~gi~V~~~~~~s~~l~~~i~~-g~~~Dv~~~a~~~~~~~l~~~g~~ 76 (237)
T 3r26_A 17 LTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEA-GAPADLFISADQKWMDYAVDKKAI 76 (237)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHH-TCCCSEEECSSHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHc-CCCceEEEECCHHHHHHHHHCCCC
Confidence 333333444455445788888877776532 33321 2248999996554 4455555543
No 204
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=31.32 E-value=59 Score=21.23 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=21.1
Q ss_pred EEcCccHHHHHHHhcCCCcEEEeCcHHHHHH
Q psy18035 36 LLGGDSMDNQFARLHASPDIVVATPGRFLHI 66 (104)
Q Consensus 36 ~~g~~~~~~~~~~l~~~~~IlV~TP~~l~~l 66 (104)
++|+...-+++.......|.+|+||..+..+
T Consensus 94 ~vG~~dLi~kIk~g~~~fD~~iAtpd~m~~v 124 (229)
T 3u42_A 94 YVGGEEIIQKILDGWMDFDAVVATPDVMGAV 124 (229)
T ss_dssp EEECTHHHHHHHTTCCCCSEEEECGGGHHHH
T ss_pred eeCcHHHHHHHhcCCccccEEEEchHHHHHH
Confidence 3566666666655555689999999875544
No 205
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=30.97 E-value=25 Score=22.04 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=11.0
Q ss_pred CccEEEEchhhhh
Q psy18035 76 SIQYVVFDEADRL 88 (104)
Q Consensus 76 ~l~~lVlDEaD~l 88 (104)
+.+++++|||..+
T Consensus 81 ~~dvViIDEaqfl 93 (191)
T 1xx6_A 81 DTEVIAIDEVQFF 93 (191)
T ss_dssp TCSEEEECSGGGS
T ss_pred cCCEEEEECCCCC
Confidence 4789999999874
No 206
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=30.73 E-value=35 Score=26.40 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=21.7
Q ss_pred CCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 52 SPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 52 ~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
..+|+++|-.... ...+.-...+++|+|||-+..
T Consensus 495 ~a~VI~~T~~~~~----~~~l~~~~fd~viIDEAsQ~~ 528 (800)
T 2wjy_A 495 NADVICCTCVGAG----DPRLAKMQFRSILIDESTQAT 528 (800)
T ss_dssp HCSEEEEETGGGG----CTTTTTCCCSEEEETTGGGSC
T ss_pred cCCEEEEchhhhC----ChhhhcCCCCEEEEECCCCCC
Confidence 4688888854322 122223467899999997664
No 207
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=30.10 E-value=1.5e+02 Score=21.11 Aligned_cols=55 Identities=18% Similarity=0.046 Sum_probs=33.3
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+.+.++++.+.+++++.....+.....-...+.. .|||+...+..+..+...+.+
T Consensus 21 ~~~~~~~Fe~~~gI~V~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~G~l 77 (523)
T 3py7_A 21 LAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 77 (523)
T ss_dssp HHHHHHHHHHHHSCEEEEECCTTHHHHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCB
T ss_pred HHHHHHHHhhccCCEEEEEechHHHHHHHHHhhCCCCCcEEEECcHhHHHHHHCCCe
Confidence 3445555555567887766543322222233333 399999888888888887764
No 208
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=30.10 E-value=55 Score=21.18 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.0
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
..-+.+++||+|.+-.
T Consensus 101 ~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 101 APFKIIFLDEADALTA 116 (319)
T ss_dssp CCCEEEEEETGGGSCH
T ss_pred CCceEEEEeCCCcCCH
Confidence 4578999999999854
No 209
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.92 E-value=53 Score=21.96 Aligned_cols=16 Identities=25% Similarity=0.573 Sum_probs=12.9
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
..-+.+++||+|.|-.
T Consensus 109 ~~~~viiiDe~~~l~~ 124 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN 124 (340)
T ss_dssp CSCEEEEETTGGGSCH
T ss_pred CCceEEEEeCCCCCCH
Confidence 4578999999998743
No 210
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=29.83 E-value=16 Score=22.01 Aligned_cols=28 Identities=7% Similarity=-0.136 Sum_probs=16.5
Q ss_pred CCCccEEEEchhhhh-hhcCcHHHHHhhh
Q psy18035 74 LSSIQYVVFDEADRL-FEMGFDVEQQSPC 101 (104)
Q Consensus 74 l~~l~~lVlDEaD~l-l~~gf~~~i~~i~ 101 (104)
+.+.+.+++||.+.. ++......+..++
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 346789999999853 3332333444443
No 211
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=28.70 E-value=1.1e+02 Score=20.19 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=10.6
Q ss_pred CCCCCCCccEEEEch
Q psy18035 70 MELKLSSIQYVVFDE 84 (104)
Q Consensus 70 ~~~~l~~l~~lVlDE 84 (104)
+.++.+++.++-+||
T Consensus 59 ~~i~~~~v~v~~lDE 73 (289)
T 1ne7_A 59 GDLSFKYVKTFNMDE 73 (289)
T ss_dssp TSCCCTTEEEEESEE
T ss_pred cCCCchheEEEeCce
Confidence 456677777777776
No 212
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=28.63 E-value=21 Score=24.00 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=10.5
Q ss_pred cEEEEchhhhhh
Q psy18035 78 QYVVFDEADRLF 89 (104)
Q Consensus 78 ~~lVlDEaD~ll 89 (104)
..++|||+|.|-
T Consensus 191 ~vl~IDEi~~l~ 202 (368)
T 3uk6_A 191 GVLFIDEVHMLD 202 (368)
T ss_dssp CEEEEESGGGSB
T ss_pred ceEEEhhccccC
Confidence 489999999884
No 213
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=28.10 E-value=1.3e+02 Score=19.65 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=30.4
Q ss_pred HHHHhccCCceEEEEEcCcc--HHHHHHHhcCCCcEEEeCcHHHHHHHHhCCC
Q psy18035 22 VKELGKFTKLQSTCLLGGDS--MDNQFARLHASPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 22 ~~~l~~~~~~~~~~~~g~~~--~~~~~~~l~~~~~IlV~TP~~l~~l~~~~~~ 72 (104)
++++.+.+++++.....+.. ....+..-..++||++.....+..+.+.+.+
T Consensus 25 ~~~Fe~~~gi~V~~~~~~~~~~~~~kl~a~~~~~Dv~~~~~~~~~~~~~~g~l 77 (330)
T 4eqb_A 25 LTQFTEETGIQVQYETFDSNEAMYTKIKQGGTTYDIAIPSEYMINKMKDEDLL 77 (330)
T ss_dssp HHHHHHHHCCEEEEEEESSHHHHHHHHHHCCSCCSEECCBHHHHHHHHHTTCB
T ss_pred HHHHHHHHCCEEEEEeCCCHHHHHHHHhcCCCCCCEEEECHHHHHHHHHCCCc
Confidence 33443444777776654432 2222222223499999888888788887764
No 214
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=27.96 E-value=23 Score=22.68 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=11.3
Q ss_pred cEEEEchhhhhhh
Q psy18035 78 QYVVFDEADRLFE 90 (104)
Q Consensus 78 ~~lVlDEaD~ll~ 90 (104)
..+++||+|.+..
T Consensus 105 ~vl~iDEid~l~~ 117 (268)
T 2r62_A 105 SIIFIDEIDAIGK 117 (268)
T ss_dssp CEEEESCGGGTTC
T ss_pred eEEEEeChhhhcc
Confidence 6899999999864
No 215
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=27.82 E-value=25 Score=22.92 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.4
Q ss_pred ccEEEEchhhhhhhc
Q psy18035 77 IQYVVFDEADRLFEM 91 (104)
Q Consensus 77 l~~lVlDEaD~ll~~ 91 (104)
-..+++||+|.+.+.
T Consensus 114 ~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 114 PSIIFIDEVDSLLSE 128 (297)
T ss_dssp SEEEEEETGGGTSBC
T ss_pred CcEEEeccHHHhccc
Confidence 468999999999754
No 216
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=27.50 E-value=28 Score=23.09 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=12.5
Q ss_pred CccEEEEchhhhhhh
Q psy18035 76 SIQYVVFDEADRLFE 90 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~ 90 (104)
+...+++||+|.+..
T Consensus 98 ~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSG 112 (324)
T ss_dssp TCSEEEEECGGGGTT
T ss_pred CCCEEEEcCcccccC
Confidence 367999999999864
No 217
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.35 E-value=23 Score=23.12 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=12.5
Q ss_pred CccEEEEchhhhhhh
Q psy18035 76 SIQYVVFDEADRLFE 90 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~ 90 (104)
.-+.+++||+|.+-.
T Consensus 107 ~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 107 KHKIVILDEADSMTA 121 (323)
T ss_dssp CCEEEEEESGGGSCH
T ss_pred CceEEEEECcccCCH
Confidence 467999999999854
No 218
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=27.31 E-value=43 Score=24.17 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=15.4
Q ss_pred ccEEEEchhhhhhhcCcHHHHHh
Q psy18035 77 IQYVVFDEADRLFEMGFDVEQQS 99 (104)
Q Consensus 77 l~~lVlDEaD~ll~~gf~~~i~~ 99 (104)
.+.+|+|||- |++.|+-..+..
T Consensus 235 ~d~liiDE~s-m~~~~~l~~l~~ 256 (446)
T 3vkw_A 235 FKRLFIDEGL-MLHTGCVNFLVE 256 (446)
T ss_dssp CSEEEEETGG-GSCHHHHHHHHH
T ss_pred CCEEEEeCcc-cCCHHHHHHHHH
Confidence 6899999997 666665544433
No 219
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=27.28 E-value=1.3e+02 Score=19.60 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=41.6
Q ss_pred CeeEEEehh---HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh---cCC--Cc-EEEeCcHHHHHHHHhCCCCCC
Q psy18035 5 NINYLISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HAS--PD-IVVATPGRFLHIVVEMELKLS 75 (104)
Q Consensus 5 ~~~~lil~P---La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l---~~~--~~-IlV~TP~~l~~l~~~~~~~l~ 75 (104)
+-++||.+. .+..+.+.+++- .++++..+.|+++..+....+ .++ .. ++++|- .-...+++.
T Consensus 112 ~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~------~~g~Glnl~ 182 (271)
T 1z5z_A 112 GDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK------AGGFGINLT 182 (271)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC------TTCCCCCCT
T ss_pred CCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh------hhcCCcCcc
Confidence 457888887 555555555432 246677788998765443333 333 44 566763 123456777
Q ss_pred CccEEEEc
Q psy18035 76 SIQYVVFD 83 (104)
Q Consensus 76 ~l~~lVlD 83 (104)
....+|+=
T Consensus 183 ~a~~VI~~ 190 (271)
T 1z5z_A 183 SANRVIHF 190 (271)
T ss_dssp TCSEEEEC
T ss_pred cCCEEEEE
Confidence 77777653
No 220
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=27.03 E-value=1.7e+02 Score=20.89 Aligned_cols=55 Identities=18% Similarity=0.046 Sum_probs=32.8
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+.+.++++.+.+++++.....+.....-...+.. .|||+...+..+..+...+.+
T Consensus 22 ~~~~i~~F~~~~gI~V~~~~~~~~~~kl~~~~asg~~PDv~~~~~~~~~~~~~~G~l 78 (539)
T 3h3g_A 22 LAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 78 (539)
T ss_dssp HHHHHHHHHHHHSCCEEEECCTTHHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCB
T ss_pred HHHHHHHHHhCcCcEEEEEechHHHHHHHHHHhCCCCCeEEEECchhHHHHHHCCce
Confidence 3344455544467777766543222222233333 399999888888888887764
No 221
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=26.40 E-value=24 Score=25.01 Aligned_cols=12 Identities=25% Similarity=0.182 Sum_probs=10.5
Q ss_pred cEEEEchhhhhh
Q psy18035 78 QYVVFDEADRLF 89 (104)
Q Consensus 78 ~~lVlDEaD~ll 89 (104)
+.+++||||.|-
T Consensus 297 ~VliIDEa~~l~ 308 (456)
T 2c9o_A 297 GVLFVDEVHMLD 308 (456)
T ss_dssp CEEEEESGGGCB
T ss_pred eEEEEechhhcC
Confidence 589999999884
No 222
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=26.29 E-value=1.7e+02 Score=20.42 Aligned_cols=55 Identities=18% Similarity=0.046 Sum_probs=32.7
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+.+.++++.+.+++++.....+.....-...+.. .|||+......+..+...+.+
T Consensus 22 ~~~~~~~F~~~~gi~V~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~g~l 78 (475)
T 3n94_A 22 LAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 78 (475)
T ss_dssp HHHHHHHHHHHHSCEEEEECCTTHHHHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCB
T ss_pred HHHHHHHHhhccCcEEEEEeCccHHHHHHHHhcCCCCCcEEEECCccHHHHHHCCCc
Confidence 3444555544467887766543222222223333 399999877788888877754
No 223
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=26.28 E-value=95 Score=17.57 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCcEEEeCcHHHHHHHHh---------CCCCCCCccEEEEchh
Q psy18035 52 SPDIVVATPGRFLHIVVE---------MELKLSSIQYVVFDEA 85 (104)
Q Consensus 52 ~~~IlV~TP~~l~~l~~~---------~~~~l~~l~~lVlDEa 85 (104)
.|||+..-|+..-.+-.. ..+..++++.-++||.
T Consensus 35 ePDIiL~G~eayef~~e~v~~e~g~e~~~l~~s~LkV~~ieEL 77 (103)
T 2pk8_A 35 NPDIILFGREAYNFLSNLLKKEMEEEGPFTHVSNIKIEILEEL 77 (103)
T ss_dssp CCCEEEECHHHHHHHHHHHHHHHTCCCCCCEETTEEEEECGGG
T ss_pred CCCeEEEcHHHHHHHHHHHhHhhccccchhhccCceEEEHHhc
Confidence 399999999876544322 1255799999999994
No 224
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=26.17 E-value=1.4e+02 Score=19.62 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhccCCceEEEEEcCcc--HHHHHHHh-cCCCcEEEeCcHH
Q psy18035 15 VQQTFKFVKELGKFTKLQSTCLLGGDS--MDNQFARL-HASPDIVVATPGR 62 (104)
Q Consensus 15 a~Qi~~~~~~l~~~~~~~~~~~~g~~~--~~~~~~~l-~~~~~IlV~TP~~ 62 (104)
-.++.+-+++..+..++.+........ ....++.+ ..+++.+|.++..
T Consensus 22 ~~~~~~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 22 NQQVWEGISRFAQENNAKCKYVTASTDAEYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEECChh
Confidence 344555666666666777665544322 22223333 3568988887643
No 225
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.17 E-value=38 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=17.1
Q ss_pred CccEEEEchhhhhhhc--CcHHHHHhhh
Q psy18035 76 SIQYVVFDEADRLFEM--GFDVEQQSPC 101 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~--gf~~~i~~i~ 101 (104)
.-..+++||+|.|... ++...+..++
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l 175 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFC 175 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHH
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHH
Confidence 4468899999999753 3334454444
No 226
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=26.16 E-value=1.4e+02 Score=22.23 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=24.7
Q ss_pred EEEEEcCccHHHHHHH-----hcCCCcEEEe-----CcHHHHHHHHh
Q psy18035 33 STCLLGGDSMDNQFAR-----LHASPDIVVA-----TPGRFLHIVVE 69 (104)
Q Consensus 33 ~~~~~g~~~~~~~~~~-----l~~~~~IlV~-----TP~~l~~l~~~ 69 (104)
++.++||....+-... ..++.+|++| ||..+++-++.
T Consensus 533 iVFivGGvTysE~r~~~els~~~~~~~vilG~T~i~np~~fl~~l~~ 579 (592)
T 3puk_A 533 IIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKM 579 (592)
T ss_dssp EEEEETCEEHHHHHHHHHHHHHCCSSEEEEEESSEECHHHHHHHHSS
T ss_pred EEEEeCCcCHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHH
Confidence 3445799876653322 2235799998 88888877764
No 227
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=25.97 E-value=35 Score=22.21 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=18.3
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
.+..++.+|||.- |+.+..+++..+.
T Consensus 100 ~~~dvV~IDEaQF-f~~~~v~~l~~la 125 (219)
T 3e2i_A 100 TNVDVIGIDEVQF-FDDEIVSIVEKLS 125 (219)
T ss_dssp TTCSEEEECCGGG-SCTHHHHHHHHHH
T ss_pred cCCCEEEEechhc-CCHHHHHHHHHHH
Confidence 4678999999975 4545666666554
No 228
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=25.72 E-value=1.4e+02 Score=19.32 Aligned_cols=53 Identities=11% Similarity=-0.085 Sum_probs=32.0
Q ss_pred HHHHHHhccCCceEEEEEcCccHHHHHHHhc---CCCcEEEeCcHHHHHHHHhCCC
Q psy18035 20 KFVKELGKFTKLQSTCLLGGDSMDNQFARLH---ASPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~IlV~TP~~l~~l~~~~~~ 72 (104)
..++.+.+.+++++.....+.....-...+. ..+||+......+..+.+.+.+
T Consensus 21 ~~~~~F~~~~gi~V~~~~~~~~~~~l~~~~~~g~~~~Dv~~~~~~~~~~~~~~g~l 76 (324)
T 4i1d_A 21 AILDPSAKKLGITINQDSIPDAWPAIKTQVGSGKPIWDVVDTPTGYCLRGGEQGLI 76 (324)
T ss_dssp HTHHHHHHHHTCEEEEEECSCCHHHHHHHHHTTCCSCCEEEEEHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCEEEEecCCCcHHHHHHHHHhCCCCeEEEECCHHHHHHHHHCCCc
Confidence 3455555555788777654433333223332 2389999988887777777654
No 229
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=25.57 E-value=47 Score=22.51 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=11.6
Q ss_pred ccEEEEchhhhhhh
Q psy18035 77 IQYVVFDEADRLFE 90 (104)
Q Consensus 77 l~~lVlDEaD~ll~ 90 (104)
-..+|+||+|.+.+
T Consensus 139 ~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 139 YLLVILDEFQSMLS 152 (412)
T ss_dssp EEEEEEESTHHHHS
T ss_pred eEEEEEeCHHHHhh
Confidence 34789999999875
No 230
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.54 E-value=28 Score=23.15 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=12.7
Q ss_pred CCccEEEEchhhhhhh
Q psy18035 75 SSIQYVVFDEADRLFE 90 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~ 90 (104)
..-+.+++||+|.+-.
T Consensus 132 ~~~~vliiDE~~~l~~ 147 (353)
T 1sxj_D 132 PPYKIIILDEADSMTA 147 (353)
T ss_dssp CSCEEEEETTGGGSCH
T ss_pred CCceEEEEECCCccCH
Confidence 3457999999999854
No 231
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=25.45 E-value=26 Score=23.52 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=13.1
Q ss_pred CCccEEEEchhhhhhhc
Q psy18035 75 SSIQYVVFDEADRLFEM 91 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~ 91 (104)
..-+.+++||+|.|-..
T Consensus 118 ~~~~vliiDe~~~l~~~ 134 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH 134 (373)
T ss_dssp SSSEEEEEECGGGSCHH
T ss_pred CCeEEEEEECcchhcHH
Confidence 44579999999988543
No 232
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=25.36 E-value=1.6e+02 Score=21.31 Aligned_cols=21 Identities=5% Similarity=0.078 Sum_probs=17.5
Q ss_pred eEEEehh---HHHHHHHHHHHHhc
Q psy18035 7 NYLISFP---IVQQTFKFVKELGK 27 (104)
Q Consensus 7 ~~lil~P---La~Qi~~~~~~l~~ 27 (104)
..||++| .|.|.++.++.+..
T Consensus 41 p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 41 PVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp CEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CEEEEeCCHHHHHHHHHHHHhhCC
Confidence 3678888 99999999998753
No 233
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=25.34 E-value=1.8e+02 Score=20.57 Aligned_cols=55 Identities=18% Similarity=0.046 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+.+.++++.+.+++++.....+.....-...+.. .|||+......+..+...+.+
T Consensus 20 ~~~~i~~Fe~~~gI~V~~~~~~~~~~kl~~~~asg~~PDv~~~~~~~~~~~~~~G~l 76 (500)
T 3ob4_A 20 LAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 76 (500)
T ss_dssp HHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCE
T ss_pred HHHHHHHHHhCcCcEEEEEeCccHHHHHHHHHhCCCCCeEEEECchhHHHHHHCCce
Confidence 3344455544467777766543322222233333 399999888788888877653
No 234
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.34 E-value=1.8e+02 Score=20.44 Aligned_cols=55 Identities=18% Similarity=0.046 Sum_probs=32.9
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+.+.++++.+.+++++.....+.....-...+.. .|||+...+..+..+...+.+
T Consensus 34 ~~~~i~~Fe~~~gI~V~~~~~~~~~~kl~~~~asg~~PDv~~~~~~~~~~~~~~G~l 90 (471)
T 3mq9_A 34 LAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 90 (471)
T ss_dssp HHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEETTHHHHHHHTTCB
T ss_pred HHHHHHHHhhCcCCEEEEEechHHHHHHHHHHhCCCCCeEEEECChhHHHHHHCCce
Confidence 4445555554467777766543322222233333 399999887788888887764
No 235
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=24.88 E-value=1.7e+02 Score=20.15 Aligned_cols=54 Identities=19% Similarity=0.055 Sum_probs=31.8
Q ss_pred HHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 19 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
.+.++++.+..++++.....+.....-...+.. .|||+......+..+...+.+
T Consensus 21 ~~~~~~F~~~~gi~V~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~G~l 76 (449)
T 3iot_A 21 AEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 76 (449)
T ss_dssp HHHHHHHHHHHSCCEEEECCTTHHHHHHHHGGGTCSCSEEEEETTTHHHHHHTTCB
T ss_pred HHHHHHHhhccCCEEEEEecHHHHHHHHHHhhCCCCCCEEEeCchhHHHHHhCCCc
Confidence 344455544467777666543322222233333 399998877778788877754
No 236
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=23.95 E-value=23 Score=24.34 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=18.2
Q ss_pred CcHHHHHHHH---hCCCCCCCccEEEEchh
Q psy18035 59 TPGRFLHIVV---EMELKLSSIQYVVFDEA 85 (104)
Q Consensus 59 TP~~l~~l~~---~~~~~l~~l~~lVlDEa 85 (104)
||..+.+.+. .+.++++++.++-+||-
T Consensus 71 TP~~ly~~L~~~~~~~idw~~V~~f~~DEr 100 (312)
T 3e15_A 71 TPIDVYKNIALVKDIKIDTSKLIFFIIDER 100 (312)
T ss_dssp HHHHHHHHHTTCCSSCCCGGGCEEEESEEE
T ss_pred CHHHHHHHHHHhhccCCCccceEEEEeeee
Confidence 3444544443 25678899999999983
No 237
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=23.82 E-value=1.4e+02 Score=18.78 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=35.0
Q ss_pred CCCeeEEEehh-----HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHh----cCCCcEEEeCc
Q psy18035 3 FANINYLISFP-----IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVATP 60 (104)
Q Consensus 3 ~~~~~~lil~P-----La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~IlV~TP 60 (104)
.+....-+++| .-.++.+.+++.++..++.+.....+.+...+.+.+ ..+++-+|-.|
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 69 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQL 69 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEES
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34444555666 445666677777777788888877666654444333 34677666544
No 238
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=23.58 E-value=1.5e+02 Score=19.30 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=22.7
Q ss_pred HHHHhccC-CceEEEEEcCccHHHHHHHhcCCCc-EEEeC
Q psy18035 22 VKELGKFT-KLQSTCLLGGDSMDNQFARLHASPD-IVVAT 59 (104)
Q Consensus 22 ~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~-IlV~T 59 (104)
++++.+.. ++ ...+-||.+..++.+.+.++++ ++|||
T Consensus 173 i~~i~~~~~~~-Pv~vGgGI~t~e~a~~~~~gAd~VIVGS 211 (240)
T 1viz_A 173 VKKTKAVLETS-TLFYGGGIKDAETAKQYAEHADVIVVGN 211 (240)
T ss_dssp HHHHHHTCSSS-EEEEESSCCSHHHHHHHHTTCSEEEECT
T ss_pred HHHHHHhcCCC-CEEEEeccCCHHHHHHHHhCCCEEEECh
Confidence 34444444 33 3556677787777777766754 67777
No 239
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=23.49 E-value=70 Score=21.16 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=18.2
Q ss_pred CcHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 59 TPGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 59 TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
.++.+...+.. ..+-..+++||+|.+-
T Consensus 93 ~~~~~~~~~~~----~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 93 KSGDLAAILTN----LSEGDILFIDEIHRLS 119 (338)
T ss_dssp SHHHHHHHHHT----CCTTCEEEEETGGGCC
T ss_pred chhHHHHHHHh----ccCCCEEEEechhhcC
Confidence 34555555543 3455799999999884
No 240
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=23.37 E-value=36 Score=23.19 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=11.0
Q ss_pred CccEEEEchhhhhhhc
Q psy18035 76 SIQYVVFDEADRLFEM 91 (104)
Q Consensus 76 ~l~~lVlDEaD~ll~~ 91 (104)
.-..+++||+|.+...
T Consensus 137 ~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 137 QKGIVFIDEIDKISRL 152 (376)
T ss_dssp TTSEEEEETGGGC---
T ss_pred CCeEEEEcCHHHHhhh
Confidence 3468999999998754
No 241
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=23.14 E-value=2e+02 Score=20.31 Aligned_cols=55 Identities=18% Similarity=0.046 Sum_probs=33.0
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+.+.++++.+.+++++.....+.....-...+.. .|||+......+..+...+.+
T Consensus 20 ~~~~~~~f~~~~~i~V~~~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l 76 (581)
T 3o3u_N 20 LAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 76 (581)
T ss_dssp HHHHHHHHHHHHCCEEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCB
T ss_pred HHHHHHHHhhccCcEEEEEecccHHHHHHHHhhCCCCCcEEEECchhHHHHHhCCcc
Confidence 3444555544467887766543322222233333 399999887788888877764
No 242
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=23.02 E-value=2.1e+02 Score=20.40 Aligned_cols=54 Identities=19% Similarity=0.055 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 19 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
.+.++++.+.+++++.....+.....-...+.. .|||+......+..+...+.+
T Consensus 22 ~~~i~~Fe~~~gI~V~~~~~~~~~~kl~~~~asg~~PDV~~~~~~~~~~~~~~G~l 77 (522)
T 3mp6_A 22 AEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 77 (522)
T ss_dssp HHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCB
T ss_pred HHHHHHHhhccCcEEEEEechhHHHHHHHHhhCCCCCeEEEECChhHHHHHhCCCc
Confidence 344445544467777766543322222223333 399999888888888887764
No 243
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=23.00 E-value=22 Score=26.50 Aligned_cols=37 Identities=24% Similarity=0.109 Sum_probs=19.6
Q ss_pred CcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 53 PDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 53 ~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
.+++++|-...........+.-...+++|+|||-+..
T Consensus 343 ~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~ 379 (646)
T 4b3f_X 343 ANVVLATNTGASADGPLKLLPESYFDVVVIDECAQAL 379 (646)
T ss_dssp CSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSC
T ss_pred cceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccc
Confidence 6788777422111000011222456799999997654
No 244
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=22.79 E-value=74 Score=18.46 Aligned_cols=47 Identities=9% Similarity=0.046 Sum_probs=25.0
Q ss_pred eeEEEehh--------HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcCCCcEEEeCcH
Q psy18035 6 INYLISFP--------IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPG 61 (104)
Q Consensus 6 ~~~lil~P--------La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlV~TP~ 61 (104)
.+++++|+ ++..+.+.++++.- ..+.+ -......- ....|++++||.
T Consensus 14 kkIlvVC~sGmgTS~ml~~klkk~~~e~gi-~~~~V--~~~~i~e~------~~~~DlIist~~ 68 (125)
T 1vkr_A 14 RKIIVACDAGMGSSAMGAGVLRKKIQDAGL-SQISV--TNSAINNL------PPDVDLVITHRD 68 (125)
T ss_dssp CEEEECCSSSSHHHHHHHHHHHHHHHHTTC-TTSEE--EECCTTCC------CTTCSEEEEEHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHCCC-ceEEE--EEeeHHHC------CCCCCEEEECCc
Confidence 46889999 45666666655331 01222 11111110 125799999984
No 245
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=22.74 E-value=1.6e+02 Score=18.90 Aligned_cols=57 Identities=7% Similarity=0.023 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHH-HHHHhCCC
Q psy18035 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFL-HIVVEMEL 72 (104)
Q Consensus 14 La~Qi~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~-~l~~~~~~ 72 (104)
+..-..+..+.|.+.+++++...+|++..-. +++.. .+||+++...... .+.+.+.+
T Consensus 33 ~~~~~~~l~~~Fe~~~gi~V~~~~~~Sg~l~--~qi~~g~~~DV~~sa~~~~~~~l~~~gl~ 92 (253)
T 3gzg_A 33 LKESMDEAATAYEKATGTPVRVSYAASSALA--RQIEQGAPADVFLSADLEWMDYLQQHGLV 92 (253)
T ss_dssp GHHHHHHHHHHHHHHHSCCEEEEEECHHHHH--HHHHTTCCCSEEECSSHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHhCCeEEEEECChHHHH--HHHHcCCCceEEEECCHHHHHHHHHCCCc
Confidence 4333344445554445788877777764322 22333 3799999665544 45455543
No 246
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=22.48 E-value=62 Score=20.56 Aligned_cols=25 Identities=8% Similarity=-0.025 Sum_probs=17.0
Q ss_pred CCccEEEEchhhhhhhcCcHHHHHhhh
Q psy18035 75 SSIQYVVFDEADRLFEMGFDVEQQSPC 101 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll~~gf~~~i~~i~ 101 (104)
++++.+.+|||.-+ ..-.+.++.+.
T Consensus 90 ~~~DvIlIDEaQFf--k~~ve~~~~L~ 114 (195)
T 1w4r_A 90 LGVAVIGIDEGQFF--PDIVEFCEAMA 114 (195)
T ss_dssp HTCSEEEESSGGGC--TTHHHHHHHHH
T ss_pred cCCCEEEEEchhhh--HHHHHHHHHHH
Confidence 45789999999987 33444444443
No 247
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=22.36 E-value=2e+02 Score=19.94 Aligned_cols=54 Identities=19% Similarity=0.055 Sum_probs=32.0
Q ss_pred HHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 19 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
.+.++++.+.+++++.....+.....-...+.. .|||+......+..+...+.+
T Consensus 21 ~~~~~~f~~~~~i~V~~~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l 76 (507)
T 3oai_A 21 AEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 76 (507)
T ss_dssp HHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCB
T ss_pred HHHHHHHhhccCcEEEEEeCCcHHHHHHHHhhCCCCCCEEEEcchhHHHHHHCCCc
Confidence 344445544467777666543222222233333 399999887788888887764
No 248
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=21.75 E-value=31 Score=20.00 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=9.9
Q ss_pred cEEEEchhhhhh
Q psy18035 78 QYVVFDEADRLF 89 (104)
Q Consensus 78 ~~lVlDEaD~ll 89 (104)
..+++||+|.+-
T Consensus 78 g~l~ldei~~l~ 89 (145)
T 3n70_A 78 GTLVLSHPEHLT 89 (145)
T ss_dssp SCEEEECGGGSC
T ss_pred cEEEEcChHHCC
Confidence 368999999874
No 249
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=21.75 E-value=55 Score=22.76 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=12.6
Q ss_pred ccEEEEchhhhhhhcC
Q psy18035 77 IQYVVFDEADRLFEMG 92 (104)
Q Consensus 77 l~~lVlDEaD~ll~~g 92 (104)
--++++||++.+....
T Consensus 280 ~~~~~lDE~~~l~~~~ 295 (437)
T 1e9r_A 280 RLWLFIDELASLEKLA 295 (437)
T ss_dssp CEEEEESCGGGSCBCS
T ss_pred cEEEEEEcccccccch
Confidence 3578999999997643
No 250
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=21.67 E-value=83 Score=24.33 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=22.0
Q ss_pred CCCcEEEeCcHHHHHHHHhCCCCCCCccEEEEchhhhhh
Q psy18035 51 ASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLF 89 (104)
Q Consensus 51 ~~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlDEaD~ll 89 (104)
...+|+++|-..+. ...+. +..+++|+|||-...
T Consensus 497 ~~a~VI~~T~~~~~----~~~L~-~~fd~viIDEA~q~~ 530 (802)
T 2xzl_A 497 NKADVVCCTCVGAG----DKRLD-TKFRTVLIDESTQAS 530 (802)
T ss_dssp HTCSEEEEETTGGG----CTTCC-SCCSEEEETTGGGSC
T ss_pred ccCCEEEechhhcC----hHHHh-ccCCEEEEECccccc
Confidence 35789998854322 22222 378899999997654
No 251
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=21.67 E-value=38 Score=23.27 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.7
Q ss_pred cEEEEchhhhhhh
Q psy18035 78 QYVVFDEADRLFE 90 (104)
Q Consensus 78 ~~lVlDEaD~ll~ 90 (104)
..++|||+|.|+.
T Consensus 209 ~il~iDEid~l~~ 221 (389)
T 3vfd_A 209 SIIFIDQVDSLLC 221 (389)
T ss_dssp EEEEEETGGGGC-
T ss_pred eEEEEECchhhcc
Confidence 5899999999953
No 252
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=21.61 E-value=43 Score=23.70 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=12.3
Q ss_pred CCCccEEEEchhhhh
Q psy18035 74 LSSIQYVVFDEADRL 88 (104)
Q Consensus 74 l~~l~~lVlDEaD~l 88 (104)
+...+++++||++.+
T Consensus 126 ~~~~~~iiiDE~~~~ 140 (459)
T 3upu_A 126 LAKCRVLICDEVSMY 140 (459)
T ss_dssp CSSCSEEEESCGGGC
T ss_pred ccCCCEEEEECchhC
Confidence 456889999999954
No 253
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=21.48 E-value=2.5e+02 Score=20.74 Aligned_cols=54 Identities=19% Similarity=0.055 Sum_probs=32.0
Q ss_pred HHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 19 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
.+.++++.+.+++++.....+.....-...+.. .|||+...+..+..+...+.+
T Consensus 21 ~~~i~~Fek~~gI~V~~~~~~~~~~kl~~~~asg~~PDV~~~~~~~~~~~~~~G~l 76 (658)
T 3f5f_A 21 AEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 76 (658)
T ss_dssp HHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHTTCSCSEEEEEHHHHHHHHHTTCB
T ss_pred HHHHHHHHhccCcEEEEEeCccHHHHHHHHHhCCCCCcEEEECcHhHHHHHHCCCE
Confidence 344455544467777666543322222233333 399999887777788877654
No 254
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=21.23 E-value=2.6e+02 Score=21.00 Aligned_cols=55 Identities=18% Similarity=0.046 Sum_probs=33.1
Q ss_pred HHHHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 18 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 18 i~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
..+.++++.+.+++++.....+.....-...+.. .|||+......+..+.+.+.+
T Consensus 56 ~~~~i~~Fek~~gIkV~~~~~~~~~~kl~~~~asG~~PDV~~~~~~~~~~~~~~G~l 112 (661)
T 3osq_A 56 LAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 112 (661)
T ss_dssp HHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCB
T ss_pred HHHHHHHHHhhhCcEEEEEeCCCHHHHHHHHHhcCCCCeEEEECcHHHHHHHHCCCE
Confidence 4445555555567777666543222222233333 499999888888888887764
No 255
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=21.15 E-value=62 Score=21.05 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=11.9
Q ss_pred CCCCCCCccEEEEch
Q psy18035 70 MELKLSSIQYVVFDE 84 (104)
Q Consensus 70 ~~~~l~~l~~lVlDE 84 (104)
..++.+++.++-+||
T Consensus 59 ~~~~~~~v~v~~ldE 73 (266)
T 1fs5_A 59 GQVSFKHVVTFNMDE 73 (266)
T ss_dssp TSCCCTTEEEEESEE
T ss_pred CCCChHHeEEEeCee
Confidence 557788888888888
No 256
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=21.11 E-value=29 Score=21.96 Aligned_cols=14 Identities=29% Similarity=0.169 Sum_probs=7.6
Q ss_pred ccEEEEchhhhhhh
Q psy18035 77 IQYVVFDEADRLFE 90 (104)
Q Consensus 77 l~~lVlDEaD~ll~ 90 (104)
-..+++||+|.+..
T Consensus 99 ~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 99 PCIVYIDEIDAVGK 112 (262)
T ss_dssp SEEEEEECC-----
T ss_pred CeEEEEeCcchhhc
Confidence 35899999999853
No 257
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=21.01 E-value=66 Score=20.45 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=27.9
Q ss_pred HHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCCCCCCccEEEEc
Q psy18035 42 MDNQFARLHA--SPDIVVATPGRFLHIVVEMELKLSSIQYVVFD 83 (104)
Q Consensus 42 ~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~~l~~l~~lVlD 83 (104)
.+.-...+.+ +|+=+|+|-..+....++..+. .=-++|++|
T Consensus 70 d~~ai~fL~~~~~pdGIIsTk~~~i~~Ak~~gL~-tIqR~FliD 112 (192)
T 3kts_A 70 DDYAIDFLCTEICPDGIISTRGNAIMKAKQHKML-AIQRLFMID 112 (192)
T ss_dssp SHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCE-EEEEEECCS
T ss_pred cHHHHHHHHhCCCCCEEEeCcHHHHHHHHHCCCe-EEEEEEEEE
Confidence 3444444543 6999999999999888876542 233466777
No 258
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=20.95 E-value=86 Score=19.11 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=17.7
Q ss_pred CCcEEEeCcHHHHHHHHhCCC
Q psy18035 52 SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 52 ~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+|.=+||||..+.-+++.+.+
T Consensus 150 npsrligtpddlfgmlkdgmv 170 (213)
T 3nku_A 150 NPSRLIGTPDDLFGMLKDGMV 170 (213)
T ss_dssp CCEEEEECHHHHHHHHHTTCS
T ss_pred CHHhhcCCcHHHHHHhhccch
Confidence 467899999999999987754
No 259
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.85 E-value=29 Score=14.89 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=15.6
Q ss_pred CeeEEEehh--HHHHHHHHHHHHh
Q psy18035 5 NINYLISFP--IVQQTFKFVKELG 26 (104)
Q Consensus 5 ~~~~lil~P--La~Qi~~~~~~l~ 26 (104)
...+.+++| -|.|..++++++.
T Consensus 5 ri~as~faPGvaAAqAL~eIERLa 28 (29)
T 1xnl_A 5 RIFASILAPGVAAAQALREIERLA 28 (29)
T ss_dssp SSTTTSSSTTTHHHHHHHHHHHHC
T ss_pred hHHHHHhCccHHHHHHHHHHHHhc
Confidence 345678888 7778777777663
No 260
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=20.50 E-value=39 Score=23.01 Aligned_cols=14 Identities=29% Similarity=0.441 Sum_probs=11.8
Q ss_pred ccEEEEchhhhhhh
Q psy18035 77 IQYVVFDEADRLFE 90 (104)
Q Consensus 77 l~~lVlDEaD~ll~ 90 (104)
-..++|||+|.|..
T Consensus 177 ~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 177 PAVIFIDEIDSLLS 190 (357)
T ss_dssp SEEEEEETHHHHTB
T ss_pred CeEEEEeCchhhhc
Confidence 46899999999965
No 261
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=20.44 E-value=74 Score=20.86 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=12.4
Q ss_pred CCccEEEEchhhhhh
Q psy18035 75 SSIQYVVFDEADRLF 89 (104)
Q Consensus 75 ~~l~~lVlDEaD~ll 89 (104)
.+.+++++|||.-+.
T Consensus 89 ~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 89 LGVAVIGIDEGQFFP 103 (234)
T ss_dssp TTCSEEEESSGGGCT
T ss_pred ccCCEEEEEchhhhh
Confidence 457899999999874
No 262
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=20.20 E-value=14 Score=19.47 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=10.7
Q ss_pred EEchhhhhhhcCcHHHHHh
Q psy18035 81 VFDEADRLFEMGFDVEQQS 99 (104)
Q Consensus 81 VlDEaD~ll~~gf~~~i~~ 99 (104)
+|||.|.+|+.+-++-+++
T Consensus 43 lLDeId~vLe~NAeefV~~ 61 (68)
T 3m9d_G 43 LLDEIDDVLEENAEDFVRA 61 (68)
T ss_dssp HHHHHTTTSSSCC------
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 5899999998765554443
No 263
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=20.12 E-value=41 Score=22.29 Aligned_cols=14 Identities=29% Similarity=0.422 Sum_probs=11.2
Q ss_pred ccEEEEchhhhhhh
Q psy18035 77 IQYVVFDEADRLFE 90 (104)
Q Consensus 77 l~~lVlDEaD~ll~ 90 (104)
-..+++||+|.+-.
T Consensus 145 ~~vl~iDEi~~l~~ 158 (350)
T 1g8p_A 145 RGYLYIDECNLLED 158 (350)
T ss_dssp TEEEEETTGGGSCH
T ss_pred CCEEEEeChhhCCH
Confidence 35899999998753
No 264
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=20.01 E-value=2.8e+02 Score=20.76 Aligned_cols=53 Identities=19% Similarity=0.070 Sum_probs=32.0
Q ss_pred HHHHHHhccCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCcHHHHHHHHhCCC
Q psy18035 20 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHA--SPDIVVATPGRFLHIVVEMEL 72 (104)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~IlV~TP~~l~~l~~~~~~ 72 (104)
+.++++.+.+++++.....+.....-...+.. .|||+......+..+...+.+
T Consensus 58 ~li~~Fek~pgIkV~~~~~~d~~~kL~~~lasG~~PDV~~~~~~~~~~~~~~G~L 112 (653)
T 3osr_A 58 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL 112 (653)
T ss_dssp HHHHHHHHHHSCEEEEECCTTHHHHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCB
T ss_pred HHHHHHHhhhCCEEEEEECCcHHHHHHHHHhCCCCCEEEEECcHHHHHHHHCCCE
Confidence 34445544467887776543322222233333 499999888888888887764
Done!