RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18035
(104 letters)
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC, hydrolase;
HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 105 bits (263), Expect = 1e-29
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 17 QTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELKLS 75
QTF+ ++++GK + ++GG + ++ R++ + +I+V TPGR L H+ + +
Sbjct: 112 QTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN-NINILVCTPGRLLQHMDETVSFHAT 170
Query: 76 SIQYVVFDEADRLFEMGF 93
+Q +V DEADR+ +MGF
Sbjct: 171 DLQMLVLDEADRILDMGF 188
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 89.7 bits (223), Expect = 1e-23
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 22 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELKLSSIQYV 80
+ LG +QS ++GG +Q L P I++ATPGR + H+ L +++Y+
Sbjct: 131 FEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190
Query: 81 VFDEADRLFEMGF 93
V DEADR+ M F
Sbjct: 191 VMDEADRILNMDF 203
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 86.2 bits (214), Expect = 3e-22
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 17 QTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELKLS 75
QTF +KEL ++GG + + +L +I+VATPGR L H+
Sbjct: 141 QTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYK 200
Query: 76 SIQYVVFDEADRLFEMGF 93
++Q +V DEADR+ ++GF
Sbjct: 201 NLQCLVIDEADRILDVGF 218
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 85.7 bits (213), Expect = 3e-22
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 15 VQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 74
QQ + E + +L+STC+ GG Q L +I +ATPGR + + + L
Sbjct: 115 AQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNL 174
Query: 75 SSIQYVVFDEADRLFEMGF 93
Y+V DEADR+ +MGF
Sbjct: 175 RRTTYLVLDEADRMLDMGF 193
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 83.8 bits (208), Expect = 2e-21
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 15 VQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR-LHASPDIVVATPGRFLHIVVE--ME 71
Q + + ++ + T + + +F DI+V TP R ++++ +
Sbjct: 111 ASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPG 170
Query: 72 LKLSSIQYVVFDEADRLFE---MGF 93
+ L+S++++V DE+D+LFE GF
Sbjct: 171 IDLASVEWLVVDESDKLFEDGKTGF 195
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 82.6 bits (205), Expect = 4e-21
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 15 VQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 74
+ L+S C+ GG + + Q + DI++ATPGR + + + L
Sbjct: 107 ALHVEAECSKYSY-KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNL 165
Query: 75 SSIQYVVFDEADRLFEMGF 93
SI Y+V DEAD++ +M F
Sbjct: 166 RSITYLVIDEADKMLDMEF 184
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 82.6 bits (205), Expect = 6e-21
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 15 VQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 74
Q ++ T L+S + GG +Q + ++VATPGR + + + ++ L
Sbjct: 113 AIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISL 172
Query: 75 SSIQYVVFDEADRLFEMGF 93
+Y+V DEADR+ +MGF
Sbjct: 173 EFCKYIVLDEADRMLDMGF 191
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 82.6 bits (205), Expect = 2e-20
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 16 QQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 75
QT + V+ LGK + GG ++ + RL+ + I+V TPGR L + LS
Sbjct: 103 LQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLS 162
Query: 76 SIQYVVFDEADRLFEMGF--DVEQ 97
+ DEAD++ F +EQ
Sbjct: 163 DCSLFIMDEADKMLSRDFKTIIEQ 186
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 82.6 bits (205), Expect = 2e-20
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 15 VQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 74
Q ++ ++ ++++ + GG + Q L ++VATPGR + ++ ++ L
Sbjct: 114 AVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 173
Query: 75 SSIQYVVFDEADRLFEMGF 93
+Y+V DEADR+ +MGF
Sbjct: 174 DFCKYLVLDEADRMLDMGF 192
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 82.2 bits (204), Expect = 4e-20
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 16 QQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 75
Q K + LG + +Q +GG ++ +L +V TPGR ++ L+
Sbjct: 119 VQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR 178
Query: 76 SIQYVVFDEADRLFEMGF--DVEQ 97
+I+ +V DEAD + GF +
Sbjct: 179 AIKMLVLDEADEMLNKGFKEQIYD 202
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 81.4 bits (202), Expect = 7e-20
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 15 VQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 74
Q F ++ + L+ + GG S +Q + +V+ATPGR L V +
Sbjct: 142 AIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITF 201
Query: 75 SSIQYVVFDEADRLFEMGF 93
++VV DEADR+ +MGF
Sbjct: 202 EDTRFVVLDEADRMLDMGF 220
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 78.3 bits (194), Expect = 7e-19
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 22 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVV 81
++++G++ + + GG Q R+ + DIVVATPGR L + + + LSS + V+
Sbjct: 76 IRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVI 134
Query: 82 FDEADRLFEMGF--DVE 96
DEAD +FEMGF D++
Sbjct: 135 IDEADLMFEMGFIDDIK 151
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 78.4 bits (194), Expect = 1e-18
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 16 QQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKL 74
QQ K V LG + +GG ++ + +L P I+V TPGR ++ L
Sbjct: 122 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 181
Query: 75 SSIQYVVFDEADRLFEMGF--DVEQ 97
I+ V DEAD + GF +
Sbjct: 182 KYIKMFVLDEADEMLSRGFKDQIYD 206
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 77.6 bits (192), Expect = 2e-18
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 16 QQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 75
Q K V L ++ +GG S L IVV TPGR + +
Sbjct: 103 LQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTD 161
Query: 76 SIQYVVFDEADRLFEMGF--DVEQ 97
I+ + DEAD + GF + Q
Sbjct: 162 KIKMFILDEADEMLSSGFKEQIYQ 185
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 74.5 bits (184), Expect = 4e-18
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 14 IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK 73
I +T K K K + + CL+GG +L+ P IV+ TPGR + E L
Sbjct: 88 IYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALD 147
Query: 74 LSSIQYVVFDEADRLFEMGF--DVEQ 97
+ + +V DEAD + +MGF DV+Q
Sbjct: 148 VHTAHILVVDEADLMLDMGFITDVDQ 173
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 74.6 bits (184), Expect = 6e-18
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 16 QQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKL 74
QQ K + LG + +GG ++ N+ +L A P IVV TPGR ++ L
Sbjct: 112 QQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSP 171
Query: 75 SSIQYVVFDEADRLFEMGF--DVEQ 97
I+ V DEAD + GF + +
Sbjct: 172 KWIKMFVLDEADEMLSRGFKDQIYE 196
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 73.7 bits (182), Expect = 6e-18
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 24 ELGKFTK-LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVF 82
EL L+ + GG Q L D VVATPGR L + + L LS ++ V
Sbjct: 91 ELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVL 150
Query: 83 DEADRLFEMGF--DVE 96
DEAD + MGF +VE
Sbjct: 151 DEADEMLSMGFEEEVE 166
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 76.0 bits (187), Expect = 8e-18
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 17 QTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFL-HIVVEM 70
Q VK++ K L+GG +++ P+IV+ATPGR + +
Sbjct: 161 QIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS 220
Query: 71 ELKLSSIQYVVFDEADRLFEMGF--DVEQ 97
+ Y V DEADRL E+GF D+E
Sbjct: 221 NKFFRFVDYKVLDEADRLLEIGFRDDLET 249
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 73.7 bits (182), Expect = 1e-17
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 16 QQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 75
Q K V L ++ +GG S L IVV TPGR + +
Sbjct: 96 LQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTD 154
Query: 76 SIQYVVFDEADRLFEMGF--DVEQ 97
I+ + DEAD + GF + Q
Sbjct: 155 KIKMFILDEADEMLSSGFKEQIYQ 178
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 72.9 bits (180), Expect = 1e-17
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 16 QQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 74
Q + ++ K + GG ++ + RL + +V+ATPGR L ++ + K+
Sbjct: 85 LQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV 144
Query: 75 SSIQYVVFDEADRLFEMGF--DVEQ 97
+Q +V DEAD+L F +E
Sbjct: 145 DHVQMIVLDEADKLLSQDFVQIMED 169
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 75.2 bits (185), Expect = 1e-17
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 16 QQTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFL-HIVVE 69
Q VK++ K L+GG +++ P+IV+ATPGR + +
Sbjct: 109 LQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY 168
Query: 70 MELKLSSIQYVVFDEADRLFEMGF--DVEQ 97
+ Y V DEADRL E+GF D+E
Sbjct: 169 SNKFFRFVDYKVLDEADRLLEIGFRDDLET 198
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 71.4 bits (176), Expect = 3e-16
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 22 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELKLSSIQYV 80
++ L L+ + GG ++ Q L + +IVV TPGR L HI L L +++Y
Sbjct: 94 IESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGT-LNLKNVKYF 151
Query: 81 VFDEADRLFEMGF--DVE 96
+ DEAD + MGF DVE
Sbjct: 152 ILDEADEMLNMGFIKDVE 169
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 67.2 bits (165), Expect = 1e-14
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 16 QQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 75
+Q V E+GK+T+++ G D+ IV+ TPG + ++ +L
Sbjct: 203 RQIMDVVTEMGKYTEVK--TAFGIK--DSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDAR 258
Query: 76 SIQYVVFDEADRLFEM-GF--DVE 96
I+ V DEAD + + G
Sbjct: 259 DIKVFVLDEADNMLDQQGLGDQSM 282
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 64.9 bits (159), Expect = 2e-14
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 16 QQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 74
Q + +G + L+ +GG + RL I V +PGR ++ L
Sbjct: 106 VQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNP 164
Query: 75 SSIQYVVFDEADRLFEMGF---DVEQ 97
SI+ + DEAD+L E G +
Sbjct: 165 GSIRLFILDEADKLLEEGSFQEQINW 190
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 65.5 bits (160), Expect = 3e-14
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 9 LISFP---IVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVATPG 61
+ FP +V+QT + +++L K++ + + I+V +
Sbjct: 68 ALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 126
Query: 62 RFLHIVVEME-LKLSSIQYVVFDEADRLFEMGF--DVE 96
E L +V D+ D + + D
Sbjct: 127 FVSK---NREKLSQKRFDFVFVDDVDAVLKASRNIDTL 161
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 64.9 bits (159), Expect = 5e-14
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 16 QQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELK 73
QT K ++++GKF L+ + G+ ++ S IV+ TPG L +
Sbjct: 109 LQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFID 165
Query: 74 LSSIQYVVFDEADR-LFEMGF--DVEQ 97
I+ V DEAD + G +
Sbjct: 166 PKKIKVFVLDEADVMIATQGHQDQSIR 192
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 64.6 bits (158), Expect = 8e-14
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 16 QQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELK 73
QT K ++++GKF L+ + G+ ++ S IV+ TPG L +
Sbjct: 176 LQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFID 232
Query: 74 LSSIQYVVFDEADR-LFEMGF--DVEQ 97
I+ V DEAD + G +
Sbjct: 233 PKKIKVFVLDEADVMIATQGHQDQSIR 259
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 64.1 bits (157), Expect = 1e-13
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 16 QQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARL-HASPDIVVATPGRFLHIVVEMELK 73
Q K + K+ ++ GG S+ L P IVV TPGR L + L
Sbjct: 90 FQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN 149
Query: 74 LSSIQYVVFDEADR-LFEMGF--DVEQ 97
L I++ + DE D+ L ++ DV++
Sbjct: 150 LKHIKHFILDECDKMLEQLDMRRDVQE 176
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 63.6 bits (155), Expect = 1e-13
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 16 QQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELK 73
QT K ++++GKF L+ + G+ ++ S IV+ TPG L +
Sbjct: 176 LQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFID 232
Query: 74 LSSIQYVVFDEADR-LFEMGF--DVEQ 97
I+ V DEAD + G +
Sbjct: 233 PKKIKVFVLDEADVMIATQGHQDQSIR 259
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 62.6 bits (153), Expect = 2e-13
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 16 QQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARL-HASPDIVVATPGRFLHIVVEMELK 73
Q K + K+ ++ GG S+ L P IVV TPGR L + L
Sbjct: 96 FQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN 155
Query: 74 LSSIQYVVFDEADR-LFEMGF--DVEQ 97
L I++ + DE D+ L ++ DV++
Sbjct: 156 LKHIKHFILDECDKMLEQLDMRRDVQE 182
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 58.7 bits (143), Expect = 9e-12
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 16 QQTFKFVKELGKFTKLQST-CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 74
+QT + V+E+GKFTK+ S + + Q + ++V TPG L ++ ++L
Sbjct: 89 RQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQL 143
Query: 75 SSIQYVVFDEADRLFEM-GF--DVE 96
I+ V DEAD + + G
Sbjct: 144 QKIKIFVLDEADNMLDQQGLGDQCI 168
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 44.4 bits (104), Expect = 9e-07
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 13 PIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 72
P+V Q + + L + L G+ + ++ A ++VATP + ++ +
Sbjct: 63 PLVLQHAESFRRLFNLPPEK-IVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRI 121
Query: 73 KLSSIQYVVFDEADRLFEMGFDVE 96
L + +VFDEA R V
Sbjct: 122 SLEDVSLIVFDEAHRAVGNYAYVF 145
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 39.0 bits (91), Expect = 7e-05
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 13 PIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME- 71
+V+Q F+ + + L G + F + S DI+++T + ++ +E
Sbjct: 93 LLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLEN 152
Query: 72 -----LKLSSIQYVVFDEA 85
++LS ++ DE
Sbjct: 153 GEDAGVQLSDFSLIIIDEC 171
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 39.2 bits (90), Expect = 8e-05
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 13 PIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 72
P+ +Q + + + T + G + + ++ + DI++ TP ++ + + +
Sbjct: 72 PVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 131
Query: 73 -KLSSIQYVVFDEADR 87
LS ++FDE
Sbjct: 132 PSLSIFTLMIFDECHN 147
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 37.2 bits (85), Expect = 3e-04
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 13 PIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 72
P+ +Q K + + G + + ++ DI+V TP ++ + L
Sbjct: 66 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL 125
Query: 73 -KLSSIQYVVFDEADR 87
LS ++FDE
Sbjct: 126 TSLSIFTLMIFDECHN 141
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 36.5 bits (83), Expect = 6e-04
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 13 PIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 72
P+ +Q K + + G + + ++ DI+V TP ++ + L
Sbjct: 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL 366
Query: 73 -KLSSIQYVVFDEADR 87
LS ++FDE
Sbjct: 367 TSLSIFTLMIFDECHN 382
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 36.0 bits (82), Expect = 8e-04
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 13 PIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 72
P+ +Q + + G S + DI++ TP ++ + +
Sbjct: 63 PVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAI 122
Query: 73 -KLSSIQYVVFDEADR 87
LS ++FDE
Sbjct: 123 PSLSVFTLMIFDECHN 138
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 36.1 bits (82), Expect = 9e-04
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 13 PIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 72
P+ +Q K + + G + + ++ DI+V TP ++ + L
Sbjct: 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL 366
Query: 73 -KLSSIQYVVFDEADR 87
LS ++FDE
Sbjct: 367 TSLSIFTLMIFDECHN 382
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 34.2 bits (78), Expect = 0.004
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 55 IVVATPGRFLHIVVEMELKLSSIQYVVFDEAD 86
+ +T G+FL + + ++ DE
Sbjct: 300 VTYSTYGKFL---ADGGCSGGAYDIIICDECH 328
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.020
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 70 MEL-KLSSIQYVVFDEADRLFE--MGF---DVEQQSP 100
M+L K S V++ AD F+ GF D+ +P
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP 1669
Score = 26.6 bits (58), Expect = 1.9
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 61 GRFLHIVVEMELKLSSIQYVVFDEADRLFEMGFDVEQ--QSPCDT 103
G + E +L +A+++F G ++ + ++P +T
Sbjct: 185 GDLIKFSAETLSELIRTT----LDAEKVFTQGLNILEWLENPSNT 225
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 30.2 bits (68), Expect = 0.081
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 22 VKELGKFTKLQ-STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80
+E + K+ + GD DI++AT +F ++ + ++ +
Sbjct: 85 FQEFQDWEKIGLRVAMATGDYDSKDEWLGKY--DIIIATAEKFDSLLRHGSSWIKDVKIL 142
Query: 81 VFDE 84
V DE
Sbjct: 143 VADE 146
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 29.0 bits (65), Expect = 0.23
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 22 VKELGKFTKL-QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYV 80
+ K+ K+ + GD DI+V T + ++ + ++ +
Sbjct: 85 YESFKKWEKIGLRIGISTGDYESRDEHLGDC--DIIVTTSEKADSLIRNRASWIKAVSCL 142
Query: 81 VFDE 84
V DE
Sbjct: 143 VVDE 146
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 27.1 bits (60), Expect = 1.2
Identities = 6/53 (11%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 37 LGGDSMDNQFARL----HASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEA 85
L G+ + + + + F +++ +++ + + DEA
Sbjct: 51 LRGEPIRYMTPAVQSERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEA 102
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 26.3 bits (57), Expect = 1.9
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 40 DSMDNQFARLHASPDIVVATPGR-FLHIVVEMELKLSSIQYVVFDEADRLFEMGFDVEQQ 98
+MDN F + + L EL Y V + F++ F+V+
Sbjct: 64 TAMDNAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGKDGRLHFKVYFNVKNF 123
Query: 99 SP 100
Sbjct: 124 KA 125
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 25.7 bits (56), Expect = 3.6
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 55 IVVATPGRFLHIVVEMELKLSSIQYVVFDEA 85
+ V H ++ L++ + V DEA
Sbjct: 312 VDVMCHATLTHRLMS-PLRVPNYNLFVMDEA 341
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 25.3 bits (55), Expect = 4.9
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 51 ASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEA 85
+ + F ++ ++ + +V DEA
Sbjct: 253 GREIVDLMCHATFTTRLLS-STRVPNYNLIVMDEA 286
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 25.1 bits (55), Expect = 5.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 48 RLHASPDIVVATPGRFLHIVV---EMELK----LSSI--QYVVFDEADRL 88
+ +P +F ++++ E LK L SI Q++ DEA RL
Sbjct: 331 EFYTNPRAKGKKTMKF-NVLLTTYEYILKDRAELGSIKWQFMAVDEAHRL 379
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.405
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,541,198
Number of extensions: 78341
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 53
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.1 bits)