RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18035
(104 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 70.1 bits (171), Expect = 7e-17
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 1 MGFANINYLISFPIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATP 60
G I + + Q ++ L L+ + GG ++ Q L + +IVV TP
Sbjct: 71 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTP 129
Query: 61 GRFLHIVVEMELKLSSIQYVVFDEADRLFEMGF 93
GR L + L L +++Y + DEAD + MGF
Sbjct: 130 GRILDHINRGTLNLKNVKYFILDEADEMLNMGF 162
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 41.4 bits (96), Expect = 3e-06
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 13 PIVQQTFKFVKELGKFTKLQSTCLLGG--DSMDNQFARLHASPDIVVATPGRFLHIVVEM 70
+ Q K + K+ + G ++ P IVV TPGR L +
Sbjct: 80 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 139
Query: 71 ELKLSSIQYVVFDEADRLFEMGFDVEQ 97
L L I++ + DE D++ E
Sbjct: 140 SLNLKHIKHFILDECDKMLEQLDMRRD 166
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 38.7 bits (89), Expect = 3e-05
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 12 FPIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 71
+ Q K + LG + +Q +GG ++ +L +V TPGR ++
Sbjct: 95 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS 154
Query: 72 LKLSSIQYVVFDEADRLFEMGF 93
L+ +I+ +V DEAD + GF
Sbjct: 155 LRTRAIKMLVLDEADEMLNKGF 176
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 37.5 bits (86), Expect = 7e-05
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 35 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEMGF 93
G + + A IVV TPGR + + I+ + DEAD + GF
Sbjct: 110 HACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGF 168
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 36.4 bits (83), Expect = 2e-04
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 49 LHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEMGF 93
+P I+V TPGR ++ L I+ V DEAD + GF
Sbjct: 128 QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGF 172
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 35.3 bits (80), Expect = 5e-04
Identities = 11/97 (11%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 6 INYLISFPIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA------SPDIVVAT 59
+ +V Q + +++ + + + L+G + IV+ T
Sbjct: 90 YVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITT 149
Query: 60 PGRFLHIVVEMELKLSSIQYVVFDEADRLFEMGFDVE 96
+L ++ D+ D + + +V+
Sbjct: 150 TQFLSKHYR----ELGHFDFIFVDDVDAILKASKNVD 182
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 30.3 bits (67), Expect = 0.024
Identities = 24/98 (24%), Positives = 42/98 (42%)
Query: 1 MGFANINYLISFPIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATP 60
+ + + + QT + V+ LGK + GG ++ + RL+ + I+V TP
Sbjct: 68 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTP 127
Query: 61 GRFLHIVVEMELKLSSIQYVVFDEADRLFEMGFDVEQQ 98
GR L + LS + DEAD++ F +
Sbjct: 128 GRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIE 165
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 29.2 bits (64), Expect = 0.074
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 1 MGFANINYLISFPIVQQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR-LHASPDIVVAT 59
+ + + + Q + ++ K G + L + +V+AT
Sbjct: 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIAT 129
Query: 60 PGRFLHIVVEMELKLSSIQYVVFDEADRLFEM 91
PGR L ++ + K+ +Q +V DEAD+L
Sbjct: 130 PGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 161
>d1hh1a_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 132
Score = 25.9 bits (57), Expect = 0.64
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 47 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQYVVFDEADRLFEMG 92
R PDI+ G + I ++ + YV ++A+ + E
Sbjct: 27 KRKDPIPDIIALKNGVIILIEMKSRKDIEGKIYVRREQAEGIIEFA 72
>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 412
Score = 25.4 bits (55), Expect = 1.6
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 38 GGDSMDNQFARLHASPDIVVATPGRFLHI-VVEMELKLSS 76
G ++ L +P + T + V L S
Sbjct: 364 GVAWLEAVLRLLAQNPKVRPVTAREAVQGPAVRTALPEGS 403
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.405
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 371,175
Number of extensions: 14329
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 11
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)