BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18037
(1390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 99.8 bits (247), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 134/245 (54%), Gaps = 13/245 (5%)
Query: 147 WASVILPLAEKIIEEVKPDQNI-DSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHK 205
W+S+ +A ++ V+ ++N DI++Y +++K+ GG DS V+ G++ +K+V+H
Sbjct: 156 WSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 215
Query: 206 SMLTALNNPKILILQCAIVYQRVEGKL---LSLEP----VIMQETEYLRNVVARISALKP 258
M + NP+I++L ++ Y++ E + ++ E ++ E EY++ + I LKP
Sbjct: 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKP 275
Query: 259 DIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTC 318
D+V+ ++ ++ LAQ L + IT + V+ T RIAR A +V + L + +GT
Sbjct: 276 DVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREE-DVGTG 334
Query: 319 SR-FSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVLYNWKL 377
+ +KK+ D T F C P K T++LRGAS++ L +V+R + V N L
Sbjct: 335 AGLLEIKKIGDEYFT--FITECKDP-KACTILLRGASKEILSEVERNLQDAMQVCRNVLL 391
Query: 378 ESSLL 382
+ L+
Sbjct: 392 DPQLV 396
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 130/250 (52%), Gaps = 27/250 (10%)
Query: 112 RPNNAKADAALTDKFESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPD--QNID 169
+P + + DAA+ K L Q I + W+ + LA ++ V+ D Q ++
Sbjct: 141 KPVDVENDAAM---------KKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVE 191
Query: 170 S-----FDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIV 224
DI++YV+++K+ GG DS V+ G++ +K+V H M + NP++++L C +
Sbjct: 192 GEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLE 251
Query: 225 YQRVEGKL-LSLEP------VIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQ 277
Y++ E + + +E ++ E E ++ + +I A++P +V+ ++ V+ LAQ L +
Sbjct: 252 YKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLK 311
Query: 278 LGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGT-CSRFSVKKLSDSNKTLMFF 336
G +++ VK + RIAR T A +V V+ L + +GT C F V+ + D + F
Sbjct: 312 GGCSVLRRVKKSDNNRIARVTGATIVNRVED-LKESDVGTNCGLFKVEMIGD--EYFSFL 368
Query: 337 EGCAFPHKGS 346
+ C P GS
Sbjct: 369 DNCKEPGSGS 378
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 11/213 (5%)
Query: 177 VQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQR--VEGKLLS 234
+++ K +GG+ ND+ +SGIV K H M + N KI ++ A+ ++ +E K+
Sbjct: 197 IKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQI 256
Query: 235 LEP-----VIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTT 289
+P + QET + +V +I ++VL Q+ + +AQ L + GI V VK +
Sbjct: 257 SDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKS 316
Query: 290 VLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVI 349
+E++A+ T A +V +D L + LG +K+ D T F GC P K +++
Sbjct: 317 DMEKLAKATGAKIVTDLDDLTPSV-LGEAETVEERKIGDDRMT--FVMGCKNP-KAVSIL 372
Query: 350 LRGASRKELMKVKRVTSFMIYVLYNWKLESSLL 382
+RG + + +V+R + I V+ K + L
Sbjct: 373 IRGGTDHVVSEVERALNDAIRVVAITKEDGKFL 405
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 129/258 (50%), Gaps = 32/258 (12%)
Query: 177 VQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVE------- 229
++ +K G +S +V G+V K V H M + N KI ++ A+ ++ E
Sbjct: 200 IKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINI 259
Query: 230 ---GKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNV 286
+L+S + QE + L+++V I+ ++V VQ+ + LAQ L + GI V V
Sbjct: 260 TSPDQLMSF---LEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRV 316
Query: 287 KTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGS 346
K + +E++A+ T A +V +V L + LG +KL+ N ++F EGC P K
Sbjct: 317 KKSDMEKLAKATGAKIVTNVKDLTPE-DLGYAEVVEERKLAGEN--MIFVEGCKNP-KAV 372
Query: 347 TVILRGASRKELMKVKRVTSFMIYVLYNW-------------KLESSLLMDEQAYVIQTK 393
T+++RG + + +V+R + V+ + ++E ++ +DE A + K
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 394 KPI-LQSPSDSVADIIPK 410
+ + +++ +D++ IIPK
Sbjct: 433 EALAIENFADALK-IIPK 449
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 129/258 (50%), Gaps = 32/258 (12%)
Query: 177 VQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVE------- 229
++ +K G +S +V G+V K V H M + N KI ++ A+ ++ E
Sbjct: 200 IKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINI 259
Query: 230 ---GKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNV 286
+L+S + QE + L+++V I+ ++V VQ+ + LAQ L + GI V V
Sbjct: 260 TSPDQLMSF---LEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRV 316
Query: 287 KTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGS 346
K + +E++A+ T A +V +V L + LG +KL+ N ++F EGC P K
Sbjct: 317 KKSDMEKLAKATGAKIVTNVKDLTPE-DLGYAEVVEERKLAGEN--MIFVEGCKNP-KAV 372
Query: 347 TVILRGASRKELMKVKRVTSFMIYVLYNW-------------KLESSLLMDEQAYVIQTK 393
T+++RG + + +V+R + V+ + ++E ++ +DE A + K
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 394 KPI-LQSPSDSVADIIPK 410
+ + +++ +D++ IIPK
Sbjct: 433 EALAIENFADALK-IIPK 449
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 129/258 (50%), Gaps = 32/258 (12%)
Query: 177 VQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVE------- 229
++ +K G +S +V G+V K V H M + N KI ++ A+ ++ E
Sbjct: 200 IKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINI 259
Query: 230 ---GKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNV 286
+L+S + QE + L+++V I+ ++V VQ+ + LAQ L + GI V V
Sbjct: 260 TSPDQLMSF---LEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRV 316
Query: 287 KTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGS 346
K + +E++A+ T A +V +V L + LG +KL+ N ++F EGC P K
Sbjct: 317 KKSDMEKLAKATGAKIVTNVKDLTPE-DLGYAEVVEERKLAGEN--MIFVEGCKNP-KAV 372
Query: 347 TVILRGASRKELMKVKRVTSFMIYVLYNW-------------KLESSLLMDEQAYVIQTK 393
T+++RG + + +V+R + V+ + ++E ++ +DE A + K
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 394 KPI-LQSPSDSVADIIPK 410
+ + +++ +D++ IIPK
Sbjct: 433 EALAIENFADALK-IIPK 449
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 17/229 (7%)
Query: 154 LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNN 213
LAE I+E V + + + ++I+K G + +D+ ++ G++ K M + +
Sbjct: 170 LAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTD 229
Query: 214 PKILILQCAIVYQRVE----------GKLLSLEPVIMQETEYLRNVVARISALKPDIVLV 263
KI +L CAI + E KL+ I QE + L+++VA I A +++
Sbjct: 230 AKIALLNCAIEIKETETDAEIRITDPAKLMEF---IEQEEKMLKDMVAEIKASGANVLFC 286
Query: 264 QRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSV 323
Q+ + LAQ L + GI VK + +E++A+ T A+++ ++ L Q LG
Sbjct: 287 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQ-DLGDAGLVEE 345
Query: 324 KKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVL 372
+K+ S +++F E C P K T+++RG + + +V R + V+
Sbjct: 346 RKI--SGDSMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVV 391
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 12/174 (6%)
Query: 189 DSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEGKL-------LSLEPVIMQ 241
DS V+ G++ +K+V+H M + NP+I++L ++ Y++ E + ++
Sbjct: 3 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 62
Query: 242 ETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRAD 301
E EY+ + I LKPD+V+ ++ ++ LAQ L + +T + V+ T RIAR A
Sbjct: 63 EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 122
Query: 302 LVYSVDVLLNQIHLGT-CSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGAS 354
+V S L + +GT +KK+ D T F C P K T++LRGAS
Sbjct: 123 IV-SRPEELREDDVGTGAGLLEIKKIGDEYFT--FITDCKDP-KACTILLRGAS 172
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 17/229 (7%)
Query: 154 LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNN 213
LAE I+E V + + + ++I+K G + +D+ ++ G++ K M + +
Sbjct: 164 LAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTD 223
Query: 214 PKILILQCAIVYQRVE----------GKLLSLEPVIMQETEYLRNVVARISALKPDIVLV 263
KI +L CAI + E KL+ I QE + L+++VA I A +++
Sbjct: 224 AKIALLNCAIEIKETETDAEIRITDPAKLMEF---IEQEEKMLKDMVAEIKASGANVLFC 280
Query: 264 QRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSV 323
Q+ + LAQ L + GI VK + +E++A+ T A+++ ++ L Q LG
Sbjct: 281 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQ-DLGDAGLVEE 339
Query: 324 KKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVL 372
+K+ S +++F E C P K T+++RG + + +V R + V+
Sbjct: 340 RKI--SGDSMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVV 385
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 17/229 (7%)
Query: 154 LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNN 213
LAE I+E V + + + ++I+K G + +D+ ++ G++ K M + +
Sbjct: 164 LAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTD 223
Query: 214 PKILILQCAIVYQRVE----------GKLLSLEPVIMQETEYLRNVVARISALKPDIVLV 263
KI +L CAI + E KL+ I QE + L+++VA I A +++
Sbjct: 224 AKIALLNCAIEIKETETDAEIRITDPAKLMEF---IEQEEKMLKDMVAEIKASGANVLFC 280
Query: 264 QRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSV 323
Q+ + LAQ L + GI VK + +E++A+ T A+++ ++ L Q LG
Sbjct: 281 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQ-DLGDAGLVEE 339
Query: 324 KKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVL 372
+K+ S +++F E C P K T+++RG + + +V R + V+
Sbjct: 340 RKI--SGDSMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVV 385
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 17/229 (7%)
Query: 154 LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNN 213
LAE I+E V + + + ++I+K G + +D+ ++ G++ K M + +
Sbjct: 170 LAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTD 229
Query: 214 PKILILQCAIVYQRVE----------GKLLSLEPVIMQETEYLRNVVARISALKPDIVLV 263
KI +L CAI + E KL+ I QE + L+++VA I A +++
Sbjct: 230 AKIALLNCAIEIKETETDAEIRITDPAKLMEF---IEQEEKMLKDMVAEIKASGANVLFC 286
Query: 264 QRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSV 323
Q+ + LAQ L + GI VK + +E++A+ T A+++ ++ L Q LG
Sbjct: 287 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQ-DLGDAGLVEE 345
Query: 324 KKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVL 372
+K+ S +++F E C P K T+++RG + + +V R + V+
Sbjct: 346 RKI--SGDSMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVV 391
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 95/184 (51%), Gaps = 11/184 (5%)
Query: 177 VQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQR--VEGKLLS 234
+QI K GG+ ND+ +V GIV K V H M L N KI ++ ++ ++ ++ ++
Sbjct: 207 IQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRI 266
Query: 235 LEPVIMQ-----ETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTT 289
+P MQ E ++ V +I A ++++ Q+ + +AQ L + G+ V K +
Sbjct: 267 NDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKS 326
Query: 290 VLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVI 349
LE++AR T +V ++D + Q LG S +K+ + ++F EG P K +++
Sbjct: 327 DLEKLARATGGRVVSNIDEISEQ-DLGYASLIEERKVGEDK--MVFVEGAKNP-KSISIL 382
Query: 350 LRGA 353
+RG
Sbjct: 383 IRGG 386
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 106/204 (51%), Gaps = 13/204 (6%)
Query: 177 VQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQ--------RV 228
+Q+ K GG +D+ +++GI+ K H M + + KI +L + + R+
Sbjct: 198 IQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRI 257
Query: 229 EGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKT 288
E + ++ + QE LR +V +I ++ ++V+ Q+ + +AQ L + GI V VK
Sbjct: 258 EDPSM-IQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKK 316
Query: 289 TVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTV 348
+ ++++A+ T A +V ++D + + LGT R K+ + T F GC P K ++
Sbjct: 317 SDMDKLAKATGASIVSTIDEISSS-DLGTAERVEQVKVGEDYMT--FVTGCKNP-KAVSI 372
Query: 349 ILRGASRKELMKVKRVTSFMIYVL 372
++RG + + +++R + ++V+
Sbjct: 373 LVRGETEHVVDEMERSITDSLHVV 396
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 101/192 (52%), Gaps = 11/192 (5%)
Query: 171 FDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEG 230
++ + ++I+K GG+ +DS ++ G+V K SH +M + N KIL+L C + +++ E
Sbjct: 145 VNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEV 204
Query: 231 ----KLLS---LEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLV 283
K+ S ++ + QE + +R + ++ A ++V Q+ + +AQ +++ GI V
Sbjct: 205 DSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAV 264
Query: 284 LNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPH 343
VK + L+R+++ T A ++ +D + + +GT K++ T + GC
Sbjct: 265 RRVKKSDLKRLSKVTGATIIQDLDQITTE-DVGTAGLVEEKEVRGGKMT--YVTGCQ-NS 320
Query: 344 KGSTVILRGASR 355
K TV+L G +
Sbjct: 321 KAVTVLLHGGTE 332
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 107/221 (48%), Gaps = 23/221 (10%)
Query: 154 LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNN 213
LAE I+E V + + + ++I+K G + +D+ ++ G++ K M + +
Sbjct: 164 LAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTD 223
Query: 214 PKILILQCAIVYQRVEGKLLSLEPVIMQET--EYLRNVVARISALKPDIVLVQRNVARLA 271
KI +L CAI +ET E L+++VA I A +++ Q+ + LA
Sbjct: 224 AKIALLNCAI-----------------EETASEMLKDMVAEIKASGANVLFCQKGIDDLA 266
Query: 272 QESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNK 331
Q L + GI VK + +E++A+ T A+++ ++ L Q LG +K+ S
Sbjct: 267 QHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQ-DLGDAGLVEERKI--SGD 323
Query: 332 TLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVL 372
+++F E C P K T+++RG + + +V R + V+
Sbjct: 324 SMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVV 363
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 107/221 (48%), Gaps = 23/221 (10%)
Query: 154 LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNN 213
LAE I+E V + + + ++I+K G + +D+ ++ G++ K M + +
Sbjct: 164 LAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTD 223
Query: 214 PKILILQCAIVYQRVEGKLLSLEPVIMQET--EYLRNVVARISALKPDIVLVQRNVARLA 271
KI +L CAI +ET E L+++VA I A +++ Q+ + LA
Sbjct: 224 AKIALLNCAI-----------------EETASEMLKDMVAEIKASGANVLFCQKGIDDLA 266
Query: 272 QESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNK 331
Q L + GI VK + +E++A+ T A+++ ++ L Q LG +K+ S
Sbjct: 267 QHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQ-DLGDAGLVEERKI--SGD 323
Query: 332 TLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVL 372
+++F E C P K T+++RG + + +V R + V+
Sbjct: 324 SMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDAAVGVV 363
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 107/221 (48%), Gaps = 23/221 (10%)
Query: 154 LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNN 213
LAE I+E V + + + ++I+K G + +D+ ++ G++ K M + +
Sbjct: 170 LAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTD 229
Query: 214 PKILILQCAIVYQRVEGKLLSLEPVIMQET--EYLRNVVARISALKPDIVLVQRNVARLA 271
KI +L CAI +ET E L+++VA I A +++ Q+ + LA
Sbjct: 230 AKIALLNCAI-----------------EETASEMLKDMVAEIKASGANVLFCQKGIDDLA 272
Query: 272 QESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNK 331
Q L + GI VK + +E++A+ T A+++ ++ L Q LG +K+ S
Sbjct: 273 QHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQ-DLGDAGLVEERKI--SGD 329
Query: 332 TLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVL 372
+++F E C P K T+++RG + + +V R + V+
Sbjct: 330 SMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVV 369
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 107/221 (48%), Gaps = 23/221 (10%)
Query: 154 LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNN 213
LAE I+E V + + + ++I+K G + +D+ ++ G++ K M + +
Sbjct: 164 LAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTD 223
Query: 214 PKILILQCAIVYQRVEGKLLSLEPVIMQET--EYLRNVVARISALKPDIVLVQRNVARLA 271
KI +L CAI +ET E L+++VA I A +++ Q+ + LA
Sbjct: 224 AKIALLNCAI-----------------EETASEMLKDMVAEIKASGANVLFCQKGIDDLA 266
Query: 272 QESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNK 331
Q L + GI VK + +E++A+ T A+++ ++ L Q LG +K+ S
Sbjct: 267 QHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQ-DLGDAGLVEERKI--SGD 323
Query: 332 TLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVL 372
+++F E C P K T+++RG + + +V R + V+
Sbjct: 324 SMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVV 363
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 10/154 (6%)
Query: 193 VSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQR--VEGKLLSLEP-----VIMQETEY 245
+SGIV K H M + N KI ++ A+ ++ +E K+ +P + QET
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 246 LRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYS 305
+ +V +I ++VL Q+ + +AQ L + GI V VK + +E++A+ T A +V
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 306 VDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGC 339
+D L + LG +K+ D T F GC
Sbjct: 121 LDDLTPSV-LGEAETVEERKIGDDRMT--FVMGC 151
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 112/221 (50%), Gaps = 16/221 (7%)
Query: 147 WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206
++S++ P++ + +V S D+R +KK+ GGT +D +V G+V ++ V++ S
Sbjct: 158 YSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKL-GGTIDDCELVEGLVLTQKVAN-S 215
Query: 207 MLTALNNPKILILQCAIVY-------QRVEGKLLSLEPVIMQETEYLRNVVARISALKPD 259
+T + KI ++Q + Q V + ++ V+ +E Y+ N+V +I +
Sbjct: 216 GITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCN 275
Query: 260 IVLVQRNVAR-----LAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIH 314
++L+Q+++ R LA L ++ I +V +++ +E I + V VD +
Sbjct: 276 VLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADM- 334
Query: 315 LGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASR 355
LG+ L+ S K L+ GCA P K T+++RG+++
Sbjct: 335 LGSAELAEEVSLNGSGK-LIKITGCASPGKTVTIVVRGSNK 374
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 1245 RLEKGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYN 1304
R ++ ++ SL+R E+ G S F + D ++KE+S ++ + NY+
Sbjct: 85 RFGIDDQDYLVSLTRNPPSESEG--SDGRFLISYDRTLVIKEVSSEDIADMHSNLSNYHQ 142
Query: 1305 YVKNCFENSSPTLLCKIFGVFRVICQNNNSKTRSNLLVMENLF-HSRNIKLRFDLKGSLR 1363
Y+ C N TLL + G++RV N +S +LVM N+F H + ++DLKGSL
Sbjct: 143 YIVKCHGN---TLLPQFLGMYRVSVDNEDSY----MLVMRNMFSHRLPVHRKYDLKGSLV 195
Query: 1364 NR 1365
+R
Sbjct: 196 SR 197
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 126/283 (44%), Gaps = 37/283 (13%)
Query: 100 QKIIQAYRRDPIRPNNAKADAALTDKFESHRNKLLQQLLIVESLSMSWASVILP------ 153
Q II+ YR +A AA+ + SH + ++ LI + +S IL
Sbjct: 118 QTIIEGYRLASAAALDALTKAAVDN---SHDKTMFREDLI-HIAKTTLSSKILSQDKDHF 173
Query: 154 --LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTAL 211
LA I +K N+ +++QI K+ GG +DSF+ G + +K + + +
Sbjct: 174 AELATNAILRLKGSTNL------EHIQIIKILGGKLSDSFLDEGFILAKKFGN-NQPKRI 226
Query: 212 NNPKILILQCAIVYQRVE-----------GKLLSLEPVIMQETEYLRNVVARISALKPDI 260
N KILI + +V+ KL LE E E ++N +A+IS +
Sbjct: 227 ENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKA---EREKMKNKIAKISKFGINT 283
Query: 261 VLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSR 320
+ ++ + ++ LGI + + +ER+A T ++V + D ++ LG C
Sbjct: 284 FINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDE-PSKCKLGECD- 341
Query: 321 FSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
++++ + + F GC + T++LRGA+ + L + +R
Sbjct: 342 -VIEEIMLGEQPFLKFSGCK-AGEACTIVLRGATDQTLDEAER 382
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 18/201 (8%)
Query: 175 QYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSML---TALNNPKILILQCAIVYQ----- 226
+ + IKK+ GG +S ++G+ K S+ NNPKIL L + +
Sbjct: 197 KLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDN 256
Query: 227 ---RVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLV 283
RVE + + ++ E + + + ++ +IVL + + LA + I
Sbjct: 257 AEVRVE-HVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCA 315
Query: 284 LNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPH 343
V + R+ + + S + HLGTC+ F ++ L F+GC P
Sbjct: 316 GRVSADDMNRVIQAVGGS-IQSTTSDIKPEHLGTCALFEEMQIGSERYNL--FQGC--PQ 370
Query: 344 -KGSTVILRGASRKELMKVKR 363
K T++LRG + + + +V+R
Sbjct: 371 AKTCTLLLRGGAEQVIAEVER 391
>pdb|2YBX|A Chain A, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
Length = 394
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 17/153 (11%)
Query: 1245 RLEKGEESFIRSLSRCIRW-EARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYY 1303
R ++ F SL+R +SG+ F + D R+I+K ++ ++ Y+
Sbjct: 93 RFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYH 152
Query: 1304 NYVKNCFENSSPTLLCKIFGVFRVICQNNNSKTRSNLLVMENLF-HSRNIKLRFDLKGSL 1362
Y+ C TLL + G++R+ N ++V N+F H ++ ++DLKGS
Sbjct: 153 QYIVEC---HGITLLPQFLGMYRL----NVDGVEIYVIVTRNVFSHRLSVYRKYDLKGST 205
Query: 1363 RNRLVDTSLDS------MDSDAVNFGQNEEIYL 1389
R + D+D +N GQ +IY+
Sbjct: 206 VAREASDKEKAKELPTLKDNDFINEGQ--KIYI 236
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 17/203 (8%)
Query: 175 QYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSM--LTALNNPKI----LILQCAIVYQRV 228
+ V + K G + +S +V G + V+ ++M A N KI L LQ A + V
Sbjct: 201 KAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGV 260
Query: 229 EGKL---LSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLN 285
+ + LE + +E + V +I +VL + + L + + I V
Sbjct: 261 QINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRR 320
Query: 286 VKTTVLERIARCTRADLVYSVDVL-----LNQIHLGTCSRFSVKKLSDSNKTLMFFEGCA 340
K L RIAR T A LV S+ L +LG C K SD + +G +
Sbjct: 321 CKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDE--CILIKGTS 378
Query: 341 FPHKGSTVILRGASRKELMKVKR 363
H S++ILRGA+ L +++R
Sbjct: 379 -KHSSSSIILRGANDYSLDEMER 400
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 117/276 (42%), Gaps = 19/276 (6%)
Query: 100 QKIIQAYRRDPIRPNNAKADAALTDKFESHRNKLLQQLLIVESLSMSWASVILPLAEKII 159
Q II+A+R N + A+T K E +K+ Q+ L+ + + +S ++ +
Sbjct: 110 QIIIRAFRTATQLAVNKIKEIAVTVKKE---DKVEQRKLLEKCAMTALSSKLISQQKAFF 166
Query: 160 EEVKPDQNIDSFDIRQ--YVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLT---ALNNP 214
++ D + D+ Q + IKKV GG +S +V+G+ K S+ +NP
Sbjct: 167 AKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNP 226
Query: 215 KILILQCAIVYQ----RVEGKLLSLE---PVIMQETEYLRNVVARISALKPDIVLVQRNV 267
I +L + + E ++ ++E ++ E L + + +I +VL + +
Sbjct: 227 MIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPI 286
Query: 268 ARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLS 327
+A + + V L+R + SV+ L + + LG C F ++
Sbjct: 287 GDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDV-LGRCQVFEETQIG 345
Query: 328 DSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
FF GC K T+ILRG + + + + +R
Sbjct: 346 GERYN--FFTGCP-KAKTCTIILRGGAEQFMEETER 378
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 69/337 (20%), Positives = 135/337 (40%), Gaps = 51/337 (15%)
Query: 63 DLNLEDSTASIRPNKNSATRTTREISENPNLLPVHSLQKIIQAYRRDPIRPNNAKADAAL 122
++ ++ TAS+ +A N+L + L K Y + + P +
Sbjct: 58 EMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPR------II 111
Query: 123 TDKFESHRNKLLQQLLIVE-SLSMSWASVI------------LPLAEKIIEEV------- 162
T+ FE+ + K LQ L V+ S M ++I LA+ + E V
Sbjct: 112 TEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAI 171
Query: 163 -KPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQC 221
K D+ ID F V+I ++ + D+ ++ G+V H M + + IL
Sbjct: 172 KKQDEPIDLF----MVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNV 227
Query: 222 AIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARISALKPD---------IVLVQR 265
++ Y++ E E ++ E +++ + V +I LK +V+ Q+
Sbjct: 228 SLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQK 287
Query: 266 NVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKK 325
+ + ++L + GI + K +ER+ + S+D L LG V +
Sbjct: 288 GIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHA---GVYE 344
Query: 326 LSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVK 362
+ + F E C P + T++++G ++ L ++K
Sbjct: 345 YTLGEEKFTFIEKCNNP-RSVTLLIKGPNKHTLTQIK 380
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 125/290 (43%), Gaps = 37/290 (12%)
Query: 98 SLQKIIQAY---RRDPIRPNNAKADAALTDKFESHRNKLLQQLL------------IVES 142
S +IIQ Y R+ ++ + +TDK + +N+LL+ + I+
Sbjct: 123 SAVEIIQGYNMARKFTLKELDEMVVGEITDK--NDKNELLKMIKPVISSKKYGSEDILSE 180
Query: 143 LSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKN- 201
L S +LP+A++ E P N+DS +++ K+ GG+ ++S V+ G+V ++
Sbjct: 181 LVSEAVSHVLPVAQQAGE--IPYFNVDS------IRVVKIMGGSLSNSTVIKGMVFNREP 232
Query: 202 VSHKSMLTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDI- 260
H L+ K+ + C + E K L + ++ + +I A+ +I
Sbjct: 233 EGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIA 292
Query: 261 ------VLVQRNVARLAQESLQQLGITLVLNVKTTV-LERIARCTRADLVYSVDVLLNQI 313
++ V LA L + GI LVL V + L R+ R A + + +
Sbjct: 293 DMGVECIVAGAGVGELALHYLNRYGI-LVLKVPSKFELRRLCRVCGATPLPRLGAPTPE- 350
Query: 314 HLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
LG ++ ++ +F + + ST+ILRGA++ L ++R
Sbjct: 351 ELGLVETVKTMEIG-GDRVTVFKQEQGEISRTSTIILRGATQNNLDDIER 399
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 102/240 (42%), Gaps = 18/240 (7%)
Query: 156 EKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTAL---- 211
E +I + D+ FD+ ++++ GG+ +DS +++G++ K+ SH M +
Sbjct: 206 EAVINVMDKDRKDVDFDL---IKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKE 262
Query: 212 --NNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEYLRNVVARISALKPDIVL 262
+ K+ IL C + + K + + + E + + ++ + D+V+
Sbjct: 263 GSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVI 322
Query: 263 VQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFS 322
Q A L Q + V V LE IA T +V L++ LGTCSR
Sbjct: 323 CQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQD-LSKDKLGTCSRIY 381
Query: 323 VKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVLYNWKLESSLL 382
++ + ++ E K T +RG+++ + + +R + V+ N +S ++
Sbjct: 382 EQEFGTTKDRMLIIEQSK-ETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVV 440
>pdb|2RHU|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
Bound To Dimethyl-Lysine And In Chimera With Histone
H3.3(28-34)
Length = 329
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 511 PDNIYWSAQLDPAAPIVKNETPVETIPRHTLELKEPHAFLSEVLTETCDSAKVRSSLALY 570
PDN W L+ ET +P +++ PH+FL + E D R + AL
Sbjct: 219 PDNFXWEKYLE--------ETGASAVPTWAFKVRPPHSFLVNMKLEAVD----RRNPALI 266
Query: 571 RAA 573
R A
Sbjct: 267 RVA 269
>pdb|2RI5|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With N358a Point Mutation
Length = 319
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 511 PDNIYWSAQLDPAAPIVKNETPVETIPRHTLELKEPHAFLSEVLTETCDSAKVRSSLALY 570
PDN W L+ ET +P +++ PH+FL + E D R + AL
Sbjct: 219 PDNFXWEKYLE--------ETGASAVPTWAFKVRPPHSFLVNMKLEAVD----RRNPALI 266
Query: 571 RAA 573
R A
Sbjct: 267 RVA 269
>pdb|2RI3|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With N358q Point Mutation
Length = 319
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 511 PDNIYWSAQLDPAAPIVKNETPVETIPRHTLELKEPHAFLSEVLTETCDSAKVRSSLALY 570
PDN W L+ ET +P +++ PH+FL + E D R + AL
Sbjct: 219 PDNFXWEKYLE--------ETGASAVPTWAFKVRPPHSFLVNMKLEAVD----RRNPALI 266
Query: 571 RAA 573
R A
Sbjct: 267 RVA 269
>pdb|2RI2|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With D355a Point Mutation
Length = 319
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 511 PDNIYWSAQLDPAAPIVKNETPVETIPRHTLELKEPHAFLSEVLTETCDSAKVRSSLALY 570
PDN W L+ ET +P +++ PH+FL + E D R + AL
Sbjct: 219 PDNFXWEKYLE--------ETGASAVPTWAFKVRPPHSFLVNMKLEAVD----RRNPALI 266
Query: 571 RAA 573
R A
Sbjct: 267 RVA 269
>pdb|2RHY|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
Bound To Monomethyl-Lysine
Length = 319
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 511 PDNIYWSAQLDPAAPIVKNETPVETIPRHTLELKEPHAFLSEVLTETCDSAKVRSSLALY 570
PDN W L+ ET +P +++ PH+FL + E D R + AL
Sbjct: 219 PDNFXWEKYLE--------ETGASAVPTWAFKVRPPHSFLVNMKLEAVD----RRNPALI 266
Query: 571 RAA 573
R A
Sbjct: 267 RVA 269
>pdb|2RHZ|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With D355n Point Mutation
Length = 319
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 511 PDNIYWSAQLDPAAPIVKNETPVETIPRHTLELKEPHAFLSEVLTETCDSAKVRSSLALY 570
PDN W L+ ET +P +++ PH+FL + E D R + AL
Sbjct: 219 PDNFXWEKYLE--------ETGASAVPTWAFKVRPPHSFLVNMKLEAVD----RRNPALI 266
Query: 571 RAA 573
R A
Sbjct: 267 RVA 269
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 175 QYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQC 221
+ ++++ GG D+ ++ G++ K+ SH M + + KI IL C
Sbjct: 185 ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTC 231
>pdb|2PQW|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17- 25), Trigonal Form
pdb|3P8H|A Chain A, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
pdb|3P8H|B Chain B, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
pdb|3P8H|C Chain C, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
Length = 323
Score = 30.8 bits (68), Expect = 6.2, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 511 PDNIYWSAQLDPAAPIVKNETPVETIPRHTLELKEPHAFLSEVLTETCDSAKVRSSLALY 570
PDN W L+ ET +P +++ PH+FL + E D R + AL
Sbjct: 220 PDNFCWEKYLE--------ETGASAVPTWAFKVRPPHSFLVNMKLEAVD----RRNPALI 267
Query: 571 RAA 573
R A
Sbjct: 268 RVA 270
>pdb|3OQ5|A Chain A, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
pdb|3OQ5|B Chain B, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
pdb|3OQ5|C Chain C, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
Length = 345
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 511 PDNIYWSAQLDPAAPIVKNETPVETIPRHTLELKEPHAFLSEVLTETCDSAKVRSSLALY 570
PDN W L+ ET +P +++ PH+FL + E D R + AL
Sbjct: 234 PDNFCWEKYLE--------ETGASAVPTWAFKVRPPHSFLVNMKLEAVD----RRNPALI 281
Query: 571 RAA 573
R A
Sbjct: 282 RVA 284
>pdb|2RJC|A Chain A, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJC|B Chain B, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJC|C Chain C, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJD|A Chain A, Crystal Structure Of L3mbtl1 Protein
pdb|2RJE|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJE|B Chain B, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJE|C Chain C, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJF|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|2RJF|C Chain C, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|2RJF|E Chain E, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|3UWN|A Chain A, The 3-Mbt Repeat Domain Of L3mbtl1 In Complex With A
Methyl-Lysine Mimic
Length = 331
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 511 PDNIYWSAQLDPAAPIVKNETPVETIPRHTLELKEPHAFLSEVLTETCDSAKVRSSLALY 570
PDN W L+ ET +P +++ PH+FL + E D R + AL
Sbjct: 220 PDNFCWEKYLE--------ETGASAVPTWAFKVRPPHSFLVNMKLEAVD----RRNPALI 267
Query: 571 RAA 573
R A
Sbjct: 268 RVA 270
>pdb|1OZ2|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-Ii) At 1.55 Angstrom
Length = 331
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 511 PDNIYWSAQLDPAAPIVKNETPVETIPRHTLELKEPHAFLSEVLTETCDSAKVRSSLALY 570
PDN W L+ ET +P +++ PH+FL + E D R + AL
Sbjct: 223 PDNFCWEKYLE--------ETGASAVPTWAFKVRPPHSFLVNMKLEAVD----RRNPALI 270
Query: 571 RAA 573
R A
Sbjct: 271 RVA 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,341,445
Number of Sequences: 62578
Number of extensions: 1473120
Number of successful extensions: 3432
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3395
Number of HSP's gapped (non-prelim): 48
length of query: 1390
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1279
effective length of database: 8,027,179
effective search space: 10266761941
effective search space used: 10266761941
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)