Query psy18037
Match_columns 1390
No_of_seqs 344 out of 1873
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 20:51:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230|consensus 100.0 5E-166 1E-170 1539.7 63.4 1052 109-1390 291-1486(1598)
2 cd03334 Fab1_TCP TCP-1 like do 100.0 2E-48 4.3E-53 440.0 29.4 251 132-385 2-260 (261)
3 COG5253 MSS4 Phosphatidylinosi 100.0 4.9E-48 1.1E-52 441.7 14.7 248 1083-1389 203-491 (612)
4 TIGR02344 chap_CCT_gamma T-com 100.0 7.5E-40 1.6E-44 404.8 29.3 264 127-395 144-430 (525)
5 TIGR02339 thermosome_arch ther 100.0 5.2E-37 1.1E-41 379.0 29.8 264 127-395 144-429 (519)
6 KOG0364|consensus 100.0 3.9E-38 8.4E-43 356.3 15.9 263 127-395 147-430 (527)
7 cd03343 cpn60 cpn60 chaperonin 100.0 1.8E-36 4E-41 374.3 29.4 263 127-395 143-426 (517)
8 cd03339 TCP1_epsilon TCP-1 (CT 100.0 2.9E-36 6.3E-41 372.8 29.7 264 127-395 153-436 (526)
9 cd03333 chaperonin_like chaper 100.0 3.3E-36 7.1E-41 330.5 24.8 207 128-377 2-208 (209)
10 smart00330 PIPKc Phosphatidyli 100.0 6.4E-37 1.4E-41 355.9 17.9 168 1168-1387 14-183 (342)
11 PTZ00212 T-complex protein 1 s 100.0 1.6E-35 3.5E-40 366.2 30.4 257 127-395 158-435 (533)
12 cd03340 TCP1_eta TCP-1 (CTT or 100.0 3.3E-35 7.1E-40 363.3 31.3 258 127-395 148-428 (522)
13 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.5E-35 5.5E-40 364.5 30.2 264 127-395 137-427 (527)
14 cd00139 PIPKc Phosphatidylinos 100.0 1.4E-36 3.1E-41 348.8 17.1 157 1180-1387 53-212 (313)
15 KOG0361|consensus 100.0 3.4E-36 7.3E-41 335.1 17.5 259 126-395 151-432 (543)
16 cd03336 TCP1_beta TCP-1 (CTT o 100.0 9.6E-35 2.1E-39 358.4 30.8 257 127-395 146-423 (517)
17 TIGR02342 chap_CCT_delta T-com 100.0 9.2E-35 2E-39 358.6 30.3 264 127-395 137-426 (517)
18 cd03338 TCP1_delta TCP-1 (CTT 100.0 8.7E-35 1.9E-39 359.1 30.0 264 127-395 136-425 (515)
19 TIGR02343 chap_CCT_epsi T-comp 100.0 1.4E-34 3.1E-39 357.6 30.0 262 127-395 157-440 (532)
20 TIGR02347 chap_CCT_zeta T-comp 100.0 4.3E-34 9.3E-39 352.8 30.3 261 127-395 145-435 (531)
21 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3.2E-34 6.9E-39 350.9 26.0 230 127-395 144-389 (480)
22 TIGR02345 chap_CCT_eta T-compl 100.0 6.8E-34 1.5E-38 351.2 28.9 259 127-395 148-429 (522)
23 TIGR02340 chap_CCT_alpha T-com 100.0 2.4E-33 5.2E-38 347.4 32.7 264 127-395 141-431 (536)
24 TIGR02341 chap_CCT_beta T-comp 100.0 1.5E-32 3.2E-37 338.8 30.7 257 127-395 147-424 (519)
25 KOG0358|consensus 100.0 4.5E-33 9.8E-38 309.8 17.5 265 127-395 154-443 (534)
26 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.5E-31 3.3E-36 327.5 25.8 239 127-395 141-392 (484)
27 TIGR02346 chap_CCT_theta T-com 100.0 9.5E-31 2.1E-35 323.6 30.1 260 127-395 148-427 (531)
28 PLN03185 phosphatidylinositol 100.0 3.8E-32 8.3E-37 337.9 17.4 151 1182-1386 402-555 (765)
29 KOG0229|consensus 100.0 2.3E-32 5E-37 314.0 13.7 154 1181-1386 95-251 (420)
30 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.8E-30 6.1E-35 316.9 28.9 254 128-393 117-392 (485)
31 cd00309 chaperonin_type_I_II c 100.0 3.8E-30 8.3E-35 314.4 26.3 226 127-394 136-374 (464)
32 cd03341 TCP1_theta TCP-1 (CTT 100.0 3.9E-29 8.5E-34 305.5 26.8 228 127-394 138-378 (472)
33 KOG0363|consensus 100.0 2.2E-29 4.8E-34 279.3 20.3 259 125-395 149-428 (527)
34 KOG0359|consensus 100.0 6.6E-30 1.4E-34 289.4 15.0 262 126-395 141-426 (520)
35 KOG0360|consensus 100.0 5.2E-29 1.1E-33 285.1 18.0 266 124-395 145-437 (545)
36 COG0459 GroL Chaperonin GroEL 100.0 3.3E-27 7.2E-32 288.5 23.6 251 132-392 142-420 (524)
37 PF01504 PIP5K: Phosphatidylin 99.9 6.1E-28 1.3E-32 271.8 8.7 124 1256-1386 2-128 (252)
38 KOG0362|consensus 99.9 7.6E-23 1.7E-27 236.5 26.4 252 132-395 158-430 (537)
39 PRK12849 groEL chaperonin GroE 99.9 3.7E-22 7.9E-27 247.1 25.5 215 146-395 152-436 (542)
40 cd03344 GroEL GroEL_like type 99.9 6.9E-22 1.5E-26 244.0 25.9 225 129-395 140-434 (520)
41 PRK00013 groEL chaperonin GroE 99.9 8.8E-22 1.9E-26 243.7 24.7 216 146-395 152-436 (542)
42 PTZ00114 Heat shock protein 60 99.9 3.2E-21 6.8E-26 239.8 26.3 215 147-395 165-452 (555)
43 PRK12851 groEL chaperonin GroE 99.9 4.2E-21 9.1E-26 237.9 25.5 216 146-395 153-437 (541)
44 TIGR02348 GroEL chaperonin Gro 99.9 7.6E-21 1.6E-25 235.1 24.5 214 146-394 151-434 (524)
45 PRK12850 groEL chaperonin GroE 99.9 1.6E-20 3.5E-25 232.8 25.5 212 148-393 155-435 (544)
46 PRK12852 groEL chaperonin GroE 99.9 4.1E-20 8.8E-25 229.7 25.9 208 148-389 155-432 (545)
47 CHL00093 groEL chaperonin GroE 99.8 7.7E-20 1.7E-24 226.5 21.7 218 146-395 152-438 (529)
48 PLN03167 Chaperonin-60 beta su 99.8 1.7E-19 3.8E-24 225.0 20.9 219 146-395 207-492 (600)
49 PRK14104 chaperonin GroEL; Pro 99.8 2.9E-18 6.4E-23 212.7 26.9 205 148-386 155-429 (546)
50 KOG0357|consensus 99.8 6.4E-19 1.4E-23 195.9 9.1 148 246-395 144-304 (400)
51 KOG0230|consensus 99.1 4.5E-11 9.8E-16 153.8 2.4 124 1115-1248 1239-1389(1598)
52 COG5253 MSS4 Phosphatidylinosi 96.5 0.001 2.2E-08 79.5 1.3 59 1184-1248 340-398 (612)
53 cd00139 PIPKc Phosphatidylinos 94.5 0.0087 1.9E-07 70.4 -0.8 41 1208-1248 80-121 (313)
54 smart00330 PIPKc Phosphatidyli 94.2 0.011 2.4E-07 70.4 -0.7 41 1208-1248 53-94 (342)
55 cd04448 DEP_PIKfyve DEP (Dishe 90.1 0.12 2.5E-06 49.2 0.9 25 1-26 52-76 (81)
56 cd04441 DEP_2_DEP6 DEP (Dishev 87.8 0.21 4.7E-06 47.8 0.9 25 1-26 56-80 (85)
57 cd04443 DEP_GPR155 DEP (Dishev 86.4 0.28 6.1E-06 46.9 0.8 25 1-26 54-78 (83)
58 cd04442 DEP_1_DEP6 DEP (Dishev 85.8 0.3 6.6E-06 46.5 0.7 25 1-26 52-77 (82)
59 cd04439 DEP_1_P-Rex DEP (Dishe 85.5 0.33 7.2E-06 46.2 0.8 25 1-26 52-76 (81)
60 cd04449 DEP_DEPDC5-like DEP (D 85.2 0.36 7.8E-06 46.0 0.9 25 1-26 54-78 (83)
61 cd04440 DEP_2_P-Rex DEP (Dishe 84.1 0.44 9.6E-06 46.4 1.0 25 1-26 61-85 (93)
62 PLN03185 phosphatidylinositol 80.1 0.45 9.8E-06 62.0 -0.7 59 1185-1248 409-469 (765)
63 PF01504 PIP5K: Phosphatidylin 79.5 0.34 7.3E-06 55.7 -2.0 33 1216-1248 8-40 (252)
64 cd04437 DEP_Epac DEP (Dishevel 78.1 1.1 2.3E-05 46.2 1.3 25 1-26 55-79 (125)
65 KOG0356|consensus 72.1 39 0.00085 42.4 12.6 190 152-375 172-420 (550)
66 PF00610 DEP: Domain found in 71.2 2 4.4E-05 39.5 1.2 24 1-25 43-67 (74)
67 smart00049 DEP Domain found in 64.9 2.9 6.3E-05 38.8 0.9 24 1-25 44-69 (77)
68 PF02579 Nitro_FeMo-Co: Dinitr 61.1 25 0.00054 33.4 6.7 48 248-296 44-91 (94)
69 cd01143 YvrC Periplasmic bindi 56.1 28 0.00061 37.5 6.8 51 250-300 53-110 (195)
70 KOG0229|consensus 55.2 4.5 9.7E-05 49.1 0.4 33 1221-1256 136-168 (420)
71 cd00851 MTH1175 This uncharact 50.2 37 0.0008 32.9 5.9 39 248-287 54-92 (103)
72 PRK09534 btuF corrinoid ABC tr 48.8 36 0.00077 41.3 6.7 52 249-300 111-169 (359)
73 TIGR03659 IsdE heme ABC transp 48.4 32 0.00069 40.1 6.1 53 249-301 83-141 (289)
74 cd01144 BtuF Cobalamin binding 46.8 42 0.00092 37.7 6.6 52 250-301 50-108 (245)
75 cd04371 DEP DEP domain, named 43.5 10 0.00022 35.3 0.8 24 1-25 52-76 (81)
76 cd01138 FeuA Periplasmic bindi 41.5 49 0.0011 37.3 6.1 50 250-300 59-112 (248)
77 cd00562 NifX_NifB This CD repr 41.3 62 0.0013 31.2 5.9 39 248-287 52-90 (102)
78 COG1433 Uncharacterized conser 40.0 85 0.0018 32.4 6.7 54 248-302 56-109 (121)
79 cd04743 NPD_PKS 2-Nitropropane 35.8 1E+02 0.0022 37.0 7.6 56 247-303 72-127 (320)
80 cd04444 DEP_PLEK2 DEP (Disheve 35.5 11 0.00023 38.0 -0.5 21 1-22 55-75 (109)
81 cd04450 DEP_RGS7-like DEP (Dis 35.2 20 0.00043 34.6 1.3 25 1-26 52-77 (88)
82 cd01146 FhuD Fe3+-siderophore 33.6 88 0.0019 35.5 6.5 52 250-301 58-115 (256)
83 cd04438 DEP_dishevelled DEP (D 33.3 21 0.00046 34.3 1.2 23 2-25 55-77 (84)
84 PLN02667 inositol polyphosphat 33.2 80 0.0017 37.3 6.1 72 1277-1359 23-99 (286)
85 PF01497 Peripla_BP_2: Peripla 32.2 1E+02 0.0022 34.2 6.6 51 251-301 54-112 (238)
86 PRK03379 vitamin B12-transport 31.1 88 0.0019 35.9 6.0 50 250-300 65-122 (260)
87 TIGR00365 monothiol glutaredox 28.3 1.4E+02 0.0031 29.2 6.0 69 248-318 3-81 (97)
88 cd01140 FatB Siderophore bindi 28.0 1.2E+02 0.0025 34.7 6.3 51 250-300 65-122 (270)
89 cd01141 TroA_d Periplasmic bin 27.8 68 0.0015 34.5 4.1 50 250-299 62-119 (186)
90 PF12226 Astro_capsid_p: Turke 27.1 28 0.00061 37.3 0.9 25 1262-1286 130-154 (230)
91 cd00636 TroA-like Helical back 27.0 78 0.0017 31.3 4.2 35 250-284 54-88 (148)
92 cd01139 TroA_f Periplasmic bin 25.6 1.1E+02 0.0025 36.3 5.9 51 250-300 84-147 (342)
93 TIGR03151 enACPred_II putative 25.1 2.2E+02 0.0048 33.9 8.0 57 247-303 77-133 (307)
94 cd01147 HemV-2 Metal binding p 24.6 1.2E+02 0.0027 34.2 5.7 51 250-300 67-126 (262)
95 COG1504 Uncharacterized conser 23.7 2.6E+02 0.0056 28.5 6.7 49 253-301 57-111 (121)
96 KOG2150|consensus 23.6 1.6E+02 0.0034 37.6 6.5 65 799-863 5-72 (575)
97 cd00853 NifX NifX belongs to a 22.0 2.2E+02 0.0047 27.9 6.1 31 256-287 60-90 (102)
98 PF03060 NMO: Nitronate monoox 21.7 2.4E+02 0.0052 33.9 7.5 58 246-303 102-160 (330)
99 cd03308 CmuA_CmuC_like CmuA_Cm 21.7 4.4E+02 0.0096 32.2 9.9 68 232-299 243-311 (378)
100 PF12846 AAA_10: AAA-like doma 20.5 2.1E+02 0.0045 32.7 6.5 58 243-300 239-301 (304)
No 1
>KOG0230|consensus
Probab=100.00 E-value=5.3e-166 Score=1539.69 Aligned_cols=1052 Identities=35% Similarity=0.547 Sum_probs=757.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCC-------hhHHHHHHHHHHHHHHHhCCCCC-CCCCCcccceEEE
Q psy18037 109 DPIRPNNAKADAALTDKFESHRNKLLQQLLIVESLS-------MSWASVILPLAEKIIEEVKPDQN-IDSFDIRQYVQIK 180 (1390)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~~hl~~l~~q~L~sk~l~-------~~w~~~l~~l~~~av~~v~pd~~-~~~~Di~~yVkIk 180 (1390)
++.-|+...+| +.+-..|+++++.|+|..++++ .+|.++++.++|+|+..++|+.+ ++.||+.+|||||
T Consensus 291 ~~~~ee~~~~m---~~~~~~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK 367 (1598)
T KOG0230|consen 291 DKSAEEDEKVM---RNVVESHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVK 367 (1598)
T ss_pred ccchhhcchhh---hccccchHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEE
Confidence 34445555554 4555778999999999999886 38999999999999999999988 8899999999999
Q ss_pred EecCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCE
Q psy18037 181 KVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDI 260 (1390)
Q Consensus 181 kI~GG~~~DS~lI~GvV~~Kn~ahk~M~~~i~nprIlLL~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnV 260 (1390)
||+||++.||++|+||||+|+++||.|++++++|||+|+.|+|||+|..++|.|++++++||.+||+.+|+||...+|||
T Consensus 368 ~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~v 447 (1598)
T KOG0230|consen 368 CVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDV 447 (1598)
T ss_pred EecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccHHHHHHHHHcCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEec---CCcEEEEEe
Q psy18037 261 VLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSD---SNKTLMFFE 337 (1390)
Q Consensus 261 Vlv~k~Vs~~A~~~L~~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~---~~kt~i~fe 337 (1390)
++|+|+|+++||++|...||+++.|||++.|+||||||||+|++|+| .++.++||+|+.|+++++.+ ..||+|||+
T Consensus 448 llVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siD-slt~~klg~C~~F~v~~~~e~hk~sKTlmffe 526 (1598)
T KOG0230|consen 448 LLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVD-SLTSQKLGYCELFRVENYVEEHKPSKTLMFFE 526 (1598)
T ss_pred EEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchh-hhhccccCCCccHhhhhhhhcccchhhhHHhh
Confidence 99999999999999999999999999999999999999999999999 59999999999999999975 389999999
Q ss_pred cCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCCCccccCCCCCCcccc
Q psy18037 338 GCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVLYNWKLESSLLMDEQAYVIQTKKPILQSPSDSVADIIPKPSTDEKH 417 (1390)
Q Consensus 338 gc~~~~~g~TIlLRG~s~~~L~evKr~l~dal~vv~n~~LE~s~~ld~~a~~~~g~~~~~~~~~~s~~~~~~~~~~~~~~ 417 (1390)
||+ +++||||||||++...|.+||++++++++++||+.||.||+.|++|.....+.. .+ ....+ .
T Consensus 527 gc~-~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~---~~----~~~~~-~------ 591 (1598)
T KOG0230|consen 527 GCP-KPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLS---IP----TSVET-S------ 591 (1598)
T ss_pred cCC-CCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcccccccc---cc----ceecc-c------
Confidence 999 799999999999999999999999999999999999999999999987322211 00 00000 0
Q ss_pred ccCCCCCCCcccccccCCCccccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHhhhcceeecccCCccCCCCccc
Q psy18037 418 TRSNSESTGDVKVAIQKPASQSIQDASDPLQSEPNVTSPMSPQDLHLAVDNVPTNSFRKALDDIILSVSPTIKYTVPYLE 497 (1390)
Q Consensus 418 ~~s~~~~~~~~~~~~~~~~~~~~~~~~dpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLS~SP~v~f~~P~ll 497 (1390)
.+..+++..++...+....+.-..+...+ ..|...+..++|++||++.|++|-+.
T Consensus 592 ------------------------~~~~~~s~~~~~t~st~~~a~~~~~~~e~-~~~~~~~~~~~ls~sp~~~~~~~~~~ 646 (1598)
T KOG0230|consen 592 ------------------------IINRSISTSPGETDSTAEKAPVEALQVEP-NRFNGALSSELLSSSPFLEFPLDLLE 646 (1598)
T ss_pred ------------------------ccccccccCCCCCcchhcccchhhhccch-hhhhcccccceeecccccccCCCccc
Confidence 00111111111111100000000011111 12788889999999999999999333
Q ss_pred cccCc---cccccccCCCccccccccCCCCcccccCCCCCCCccccccccCCccccccccccccchHhHHHHHHHHHhhC
Q psy18037 498 NETGK---KCDLRKYFPDNIYWSAQLDPAAPIVKNETPVETIPRHTLELKEPHAFLSEVLTETCDSAKVRSSLALYRAAG 574 (1390)
Q Consensus 498 ~~~g~---~~~lr~~~~~~~y~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ra~~ 574 (1390)
..-|+ .+.+-.+..+. +...+.|.|.... .....+......-+.+.+..+
T Consensus 647 i~P~~~~~e~~~~~~~~~~-------------------------~~~~lv~~~es~~--~~~~~s~~~~~~~l~e~~~~~ 699 (1598)
T KOG0230|consen 647 IAPGELVIETRLSSYSKGP-------------------------KQNGLVPAHESVL--NDLHESTLSILSKLPETRSGT 699 (1598)
T ss_pred cCCccceeecchhhhcCch-------------------------hhccccccccccc--cccccccccccccccchhccc
Confidence 32221 11111111000 1112222222221 000000000111111111111
Q ss_pred CcccC-C--CCCCCCCC-CC-CCCCCCC--CCCCCCCCCCCcceEEEEEEeecCCCCCCccCCceeeeeecCCCCCcchH
Q psy18037 575 GRLTP-S--SKKLSPPP-TV-APPAPVS--TKIDALQPSNHQRLPVLIYICRSPIHSPGFCVEPCTINMDFYARNDIPLG 647 (1390)
Q Consensus 575 ~~~~~-~--~~~~~~~~-~~-~~~~~~~--~~~d~l~p~~HQ~I~VL~Ss~~~s~~~~~pC~~P~lv~i~fYg~nD~tLG 647 (1390)
+.... . .+...... +. .-.++|+ ...+.++|.+||+|+||||+++.. ...+|++|||++|+|||.+|++||
T Consensus 700 ~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~s~~~~~~~~HQsilVl~ss~~~~--k~~~C~r~~l~~ikyy~~~D~~lg 777 (1598)
T KOG0230|consen 700 HEGNEDKGPGLEPELANNQNIQRPEETEEQSSKDALDPSSHQSILVLFSSRSVL--KGSVCERPHLLRIKYYGSFDKPLG 777 (1598)
T ss_pred chhccccCccccccccccccccchhhhhhhhcccCCCccccceeEEEEeeeeec--cCCccccccEEEEEeeccccchHh
Confidence 11000 0 00000000 00 0012222 457889999999999999997332 124499999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCchhcccceeeeCCeEEEEEEeecCCCCCCCCCCcEEEEeeCCCCC---CCCCceecccc
Q psy18037 648 SFLEKYCFRRDYKCPSATCLIPTLEHERWFIHGNGSVCVGLCEIENRPPEAYDERIIMWNWCPSCK---QVSSILPMSSD 724 (1390)
Q Consensus 648 ~FLe~~cf~~~~~C~s~~C~~pm~~H~r~yvH~~g~v~I~v~~~~~~~~p~~~~~IlmWs~C~~C~---~~Tp~v~mS~~ 724 (1390)
+||+++||++.|.||+ |++||++|+|+||||+||++|.|++++...+++.++.||||+||.+|+ ..|++++||++
T Consensus 778 ~fL~~~~f~~~~~C~s--C~~~~laHv~~yvh~~g~l~I~v~~~~e~l~~e~~~kI~~w~~ClkC~~~~~sT~rv~~Sda 855 (1598)
T KOG0230|consen 778 RFLRDYLFDQRYMCPS--CNEPMLAHVRCYVHGNGSLTISVKKLPELLPGEQKGKIWMWSRCLKCNRFPPSTRRVVMSDA 855 (1598)
T ss_pred HHHHHHHhcccccCcc--ccchHHHHHHHHhhccCceEEEeeccccccccccCceEEEEeccccCCCCCCCcceeEcchh
Confidence 9999999999999976 999999999999999999999999999852456889999999999999 67999999999
Q ss_pred hhcccHHhHhhhhccCCCcccccCCCCCCccccceeeeeeCCEEEEEEEceeeeeEEecCCceeEecCCccchhhHHHHH
Q psy18037 725 TWRLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQVHYFAYNNIVASFIYTRIKLYEVCIPSTTLKKSLSTFDKNGLFEEV 804 (1390)
Q Consensus 725 tw~~SFgKfLEL~F~~~~~~~r~~~C~H~~~~dhvryF~~~~~va~F~y~~I~~~ev~~Pp~~i~~~~~~~~k~~~~~e~ 804 (1390)
+|++||||||||+||+|++..|..+|+|++||||+|||||++|||+|+|++|++|+|.+||.++.|++ ....|+.+|+
T Consensus 856 aw~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~L~ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~~--~~~~~~~~e~ 933 (1598)
T KOG0230|consen 856 AWGLSFGKFLELSFSNHATANRVASCGHSLHRDCLRFFGFGNMVACFRYSPIEVYEVDLPPSKLEFNH--IQQEWLQEEI 933 (1598)
T ss_pred hHhhhHHHHHHhhhccccccccccCCcchhhhhhhhhcccCCceeeeeeccceeEEEeCChhhcccch--hhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999993 5677899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccc----cccchhhHHHHHHHHHHHHHHHHHhCCcchhcccccccccccccccchh
Q psy18037 805 KKWSLMGQEVFSIVLEKLHTNQTDATM----NTLQPLLVKDQANLKQKVDDIQMKLTDPDVMNNLWNLEDSILHTNQTDA 880 (1390)
Q Consensus 805 ~~~~~k~~~~f~sv~~rL~~l~~d~~~----~~~~~~l~~e~~e~k~kieei~~~L~s~~~~~~~w~~~~~~~~~~~~~~ 880 (1390)
+++..||+.+|+.|.+||.+++.+... ..++.++++|+.+|++.++.+..+....
T Consensus 934 k~v~~k~~~~~n~v~~~l~~i~~~~~~~~~i~~l~~~l~~e~~~f~~~l~~~~~~~~~~--------------------- 992 (1598)
T KOG0230|consen 934 KEVIEKGEELYNEVLERLSRIAEKDENRPLIQELKELLKHEKKEFKQNLQPIFTLEVDD--------------------- 992 (1598)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhhhhhhHHHHHHhhhhhhhhcccc---------------------
Confidence 999999999999999999999987332 3455677788888887777554433210
Q ss_pred hHhhhchhhhhhhhccchhhhhhhhccCCcccccccccchhhHHHHHHHHHHhhhcccccccccCCCCCCCCCCCCccCc
Q psy18037 881 TMNTLQPLLVKDQANLKQKVDDIQMKLTDPDVMNNLWNLEDSIVKLKRAVVESINNWNSRLMKTRPKTKSTDSSKSLLTD 960 (1390)
Q Consensus 881 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~w~~rl~~~~~~~~~~~~~s~~~~~ 960 (1390)
.....++ ..++++||+|....+.|+.+++.+..+.+...+.-. .+
T Consensus 993 --------------------------------~~~s~d~-l~l~~~rr~l~~~s~~w~~~l~s~~~~~k~~~~~~~--~~ 1037 (1598)
T KOG0230|consen 993 --------------------------------GQLSHDI-LALNRDRRALLASSYLWDERLISLSKSLKLESSKDT--KP 1037 (1598)
T ss_pred --------------------------------CcchhhH-HHHHHHHHHHHhhhccccccchhhhhhhcccccccc--cc
Confidence 0001123 347899999999999999999987655541110000 00
Q ss_pred ccCCCCCccCCCcccccCCCCcccccCCCCCCCccccccchhhhhhhccCCCCCCCCCCCcchHHhhhccccccCCCCCc
Q psy18037 961 IVEGTPTTETSTEYVFDSEESEESDVDHVDDSDTVKTKVPRMKAILSQLLPTNVPSLPISNSLVEAQQHHTLALGCSVPV 1040 (1390)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~lP~~~~~~pi~~~l~~~~~~~~~~~~~~~p~ 1040 (1390)
....+.++.. .+..+..+...+.-+.+++ .+...+...+.+.+..+.+++..... . .+....+.
T Consensus 1038 ~~~~~~~~~~--------~~r~p~~~k~~~~~~~~~~----~~s~~~~~~~~~lp~~~~s~~~d~~~---~-~~~~~~~~ 1101 (1598)
T KOG0230|consen 1038 KESETNSTAK--------RKRSPEPQKGVDEDSFLTD----SSSDVSSLEHLNLPLPEDSNSTDTGL---S-GPSEVLED 1101 (1598)
T ss_pred ccccccCccc--------cccCchhhccccccccccc----cccccCccccccCCCCCcccccchhc---c-Cccccccc
Confidence 0000000000 0000000000000000000 00000000011111111111000000 0 00000000
Q ss_pred ccCCCCccccccCCCCCCCCCccccCCCcccccCCCCCCCCCchhcCchhhHHHHHHhc----CCCCCCCCCcccccccc
Q psy18037 1041 VHSSKSLLTDIVEGTPTTETSTEYVFDSEESEESDVDHVDDSDTVKTKVPRMKAILSQL----LPTNVPSLPISNSLVEA 1116 (1390)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~~~~~~~~~~~~~~~k~~~lk~~Ls~f----~~~~~~~~~l~~p~~~~ 1116 (1390)
+ .+... ....+ .....++ ...++++.+. |.+.... |++.|+ .+
T Consensus 1102 ~------------------~s~~~-------~~~~v-----~n~~s~~-~~~~~~~~~~l~~~~~g~r~~-~~~~P~-s~ 1148 (1598)
T KOG0230|consen 1102 N------------------ESIDE-------MLGSV-----RNTYSLA-NKVRKILKQILDSATIGNRAN-PKSSPF-SG 1148 (1598)
T ss_pred c------------------cchhh-------ccccc-----ccccchh-hHHHHHHHHhccccccccccc-CCCCCC-ch
Confidence 0 00000 00000 0001111 1222222222 2222222 344444 33
Q ss_pred ccccc-------------------------------------ccc--------------------------------CC-
Q psy18037 1117 QQHHT-------------------------------------LAL--------------------------------GC- 1126 (1390)
Q Consensus 1117 ~eH~~-------------------------------------l~~--------------------------------g~- 1126 (1390)
..|.. +.. |.
T Consensus 1149 ~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~~~e~~lns~~~~~~~~~~~k~~~s~~~s~~~~~~rLl~p~~~n 1228 (1598)
T KOG0230|consen 1149 QDHSTDLPLESNPIHVLEKELSSWIEDPLTNMYYREATKELSLNSQKNSAETKEPPKYPSSESESEPESSSRLLLPLGLN 1228 (1598)
T ss_pred hhhccccccccCCccccccccHHHHhhhhhhHhHHHHHHHHHhhcchhhcccccCCcCcccccccccccccceeccccCC
Confidence 33322 100 11
Q ss_pred CccEEeeCCCCchhhhhccCChhhHHHHHHHh-----hhc-------------------------------cccc--c--
Q psy18037 1127 SVPVVVYEQEPSSIISYALSSFDYQYKLEELK-----AAH-------------------------------EIET--N-- 1166 (1390)
Q Consensus 1127 ~~~v~v~e~epss~ia~~L~s~~y~~~~~~~~-----~~~-------------------------------~~~~--~-- 1166 (1390)
.+.|.||||||+|+|||||++.+|.....+-. ..+ ..+. .
T Consensus 1229 dl~vp~~edpp~s~ia~al~s~~~~~q~~~p~~sis~~~S~~~~~~s~~~e~~~~~~~sl~~s~l~~s~~~~~e~l~~~~ 1308 (1598)
T KOG0230|consen 1229 DLVVPVYEDPPPSLIAYALSSKERINQESSPGLSISFSLSNLQGRLSKISEFDDTKSESLDNSGLESSSYRRGENLQKSK 1308 (1598)
T ss_pred cccCCcccCCCchhhhhhhcchhhccCCCCCCccccccccccccchhhhhhhhhhhhccccccccchhhhcchhhccccc
Confidence 24578999999999999999977655332110 000 0111 1
Q ss_pred cCCCCcceeeecCCCcceEEEEccHHHHHHHHHhhCCCChhHHHhhhhhhhhhcccCCCCCCcccccCchHHHHhhhccc
Q psy18037 1167 ECKIPHIDIKFSDTAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRL 1246 (1390)
Q Consensus 1167 ~~~~~h~~~~f~~~~~~~~~~~y~~~~F~~lR~~~~~~~~~~~~~Sl~r~~~~~~~~gksgs~f~~t~d~~~~~~e~~~~ 1246 (1390)
.....|++++|.+|..+|+|++|||++|++||+.||.
T Consensus 1309 ~~~~~h~~~~f~egk~k~svk~~yAe~F~~LR~~c~~------------------------------------------- 1345 (1598)
T KOG0230|consen 1309 LETRTHLEYQFSEGKAKYSVKCYYAEQFRALRKICCP------------------------------------------- 1345 (1598)
T ss_pred cccccceeeeccCCceEEEEEEEehhhHHHHHHhhCc-------------------------------------------
Confidence 2566899999999999999999999999999999975
Q ss_pred ccChHHHHHHhhhcccccccCCCCCCceeeecCCceEEeccCHHHHHHHHHhhHHHHHHHhhhccCCCCceeeeeeeeEE
Q psy18037 1247 EKGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNCFENSSPTLLCKIFGVFR 1326 (1390)
Q Consensus 1247 ~~~~~~fi~SL~~~~~~~~~gGKSgs~F~~T~D~rfiiKtis~~E~~~fl~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~ 1326 (1390)
++++||+||+||++|.|+|||||++|+||.|+|||||+|++.|+++|++|||+||+||++++++..||+||||||+||
T Consensus 1346 --sEe~fIrSLsRc~~W~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyq 1423 (1598)
T KOG0230|consen 1346 --SEEDFIRSLSRCVKWEAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQ 1423 (1598)
T ss_pred --hHHHHHHHHhcCcccccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC--CCceEEEEEEeccCCCCCceeEEEecCcccCCccCCCCCCCCCCCccccCCccccCC
Q psy18037 1327 VICQNNN--SKTRSNLLVMENLFHSRNIKLRFDLKGSLRNRLVDTSLDSMDSDAVNFGQNEEIYLP 1390 (1390)
Q Consensus 1327 i~~~~~~--~~~k~~~iVMeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~vllD~n~~~~~~ 1390 (1390)
|.+++.. +..|+++||||||||+++++|+||||||+|||++.++ ++. ++|||||||+++++
T Consensus 1424 V~vK~~~sgke~K~DvmVMENLfY~r~vsRifDLKGS~RnR~v~~t-~~~--d~VLLDeNlVe~~~ 1486 (1598)
T KOG0230|consen 1424 VSVKSPKSGKETKMDVMVMENLFYGRKVSRIFDLKGSLRNRYVPTT-SGA--DEVLLDENLVEMMW 1486 (1598)
T ss_pred EEEecCCCCceeEeeeeeehhhhhccccceeeeccchhhhccCCCC-CCC--ceEEecHHHHhhhh
Confidence 9999887 4589999999999999999999999999999999876 444 99999999999874
No 2
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=2e-48 Score=439.98 Aligned_cols=251 Identities=56% Similarity=0.892 Sum_probs=237.9
Q ss_pred HHHHHHhhcccCC--hhHHHHHHHHHHHHHHHhCCCCC-CCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCCCc
Q psy18037 132 KLLQQLLIVESLS--MSWASVILPLAEKIIEEVKPDQN-IDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSML 208 (1390)
Q Consensus 132 ~l~~q~L~sk~l~--~~w~~~l~~l~~~av~~v~pd~~-~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~M~ 208 (1390)
+|+.|+|.++++. ..|.+.|++++++|+..+.++.. ++.+|+++||+|+|++||++.||++|+|+||+|+++|++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~ 81 (261)
T cd03334 2 ALLAQLLKDEGISNDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMP 81 (261)
T ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCC
Confidence 5899999999997 58999999999999999975432 45799987899999999999999999999999999999999
Q ss_pred ceecCCcEEEEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccCh
Q psy18037 209 TALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKT 288 (1390)
Q Consensus 209 ~~i~nprIlLL~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK~ 288 (1390)
++++||||+|++|||||++++.++.+++.++++|++|++++|++|+++|||||||+|+|+++|++||.++||+++++|++
T Consensus 82 ~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~ 161 (261)
T cd03334 82 SKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKP 161 (261)
T ss_pred cccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCC-----cEEEEEecCCCCCCeEEEEEecCCHHHHHHHHH
Q psy18037 289 TVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSN-----KTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363 (1390)
Q Consensus 289 ~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~-----kt~i~fegc~~~~~g~TIlLRG~s~~~L~evKr 363 (1390)
.+|+|||+||||.|+++++.+++++.||+|+.|+++++ +. ++|+||+||+ ...+|||+|||++.++|+|+||
T Consensus 162 ~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~i--g~~~~~~~~~~~~~~~~-~~~~~TIlLRG~t~~~lde~eR 238 (261)
T cd03334 162 SVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTY--VEEHGRSKTLMFFEGCP-KELGCTILLRGGDLEELKKVKR 238 (261)
T ss_pred HHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEe--cCcCCCceeEEEEecCC-CCceeEEEEECCCHHHHHHHHH
Confidence 99999999999999999654789999999999999999 64 7999999999 5789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy18037 364 VTSFMIYVLYNWKLESSLLMDE 385 (1390)
Q Consensus 364 ~l~dal~vv~n~~LE~s~~ld~ 385 (1390)
+++||++++||+.+|.+++.|.
T Consensus 239 ~i~Dal~v~~~~~le~~~~~~~ 260 (261)
T cd03334 239 VVEFMVFAAYHLKLETSFLADE 260 (261)
T ss_pred HHHHHHHHHHHHHHhHHHHhcc
Confidence 9999999999999999999874
No 3
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-48 Score=441.68 Aligned_cols=248 Identities=35% Similarity=0.524 Sum_probs=214.9
Q ss_pred chhcCchhhHHHHHHhcCCCCC--CCCCccccccccccccccccCCCccEEeeCCCCchhhhhccCChhhHHHHHHHhhh
Q psy18037 1083 DTVKTKVPRMKAILSQLLPTNV--PSLPISNSLVEAQQHHTLALGCSVPVVVYEQEPSSIISYALSSFDYQYKLEELKAA 1160 (1390)
Q Consensus 1083 ~~~~~k~~~lk~~Ls~f~~~~~--~~~~l~~p~~~~~eH~~l~~g~~~~v~v~e~epss~ia~~L~s~~y~~~~~~~~~~ 1160 (1390)
+++.+| ..+|++|++||++++ .|.|+.+|. .|++|+|-+++ |+++|+|||+.|||+|++.||+.++-.+++.
T Consensus 203 spl~dk-~~~kr~ls~~~~e~nS~n~~p~~~~s-~p~~~~~s~S~----~iir~~~pss~~a~~~s~~d~~~k~mr~r~s 276 (612)
T COG5253 203 SPLPDK-SLLKRTLSNFWAERNSYNWKPLVYPS-CPSEHIFSDSD----VIIREDEPSSLIAFCLSTSDYRNKMMRLRDS 276 (612)
T ss_pred CCCChH-HHHHHHhhhhhccccccCCCCccCCC-CCCCCCcCccc----cccccCCcchhhhccccchhHHHHHHhhhhh
Confidence 366778 888999999999974 378999999 99999999996 9999999999999999999999988665422
Q ss_pred c-------------c---------------------ccc--ccCCCCcceeeecCCCcceEEEEccHHHHHHHHHhhCCC
Q psy18037 1161 H-------------E---------------------IET--NECKIPHIDIKFSDTAANFSVKMYFADLFAELRKFSCPE 1204 (1390)
Q Consensus 1161 ~-------------~---------------------~~~--~~~~~~h~~~~f~~~~~~~~~~~y~~~~F~~lR~~~~~~ 1204 (1390)
. + ++. ..+++.|+.++|..+...|.||+|||++|+.||++||.
T Consensus 277 e~~De~~l~~~~le~gh~n~~~synmltgirvtlsr~e~iM~~~tdth~~e~~~eg~~~~s~K~y~~e~Fr~lR~l~g~- 355 (612)
T COG5253 277 ETMDERLLNGMPLEGGHRNPQESYNMLTGIRVTLSRIEEIMIKKTDTHLNEQFEEGLYEFSCKDYFPEVFRELRALCGC- 355 (612)
T ss_pred hcchhhhccccccccccccchhhhhhhhhhHHHHHHHHHHhcCCcCccchhhccccceeeeHHhhCHHHHHHHHHHhCC-
Confidence 1 0 011 45778999999999999999999999999999999985
Q ss_pred ChhHHHhhhhhhhhhcccCCCCCCcccccCchHHHHhhhcccccChHHHHHHhhhcccccccCCCCCCceeeecCCceEE
Q psy18037 1205 GEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEKGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFIL 1284 (1390)
Q Consensus 1205 ~~~~~~~Sl~r~~~~~~~~gksgs~f~~t~d~~~~~~e~~~~~~~~~~fi~SL~~~~~~~~~gGKSgs~F~~T~D~rfii 1284 (1390)
++.|+++++||..|+..|||||||||||.|.||||
T Consensus 356 ---------------------------------------------~~alvsl~sryil~E~~~GKSGSff~~trD~kfIi 390 (612)
T COG5253 356 ---------------------------------------------DEALVSLLSRYILWESNGGKSGSFFLFTRDYKFII 390 (612)
T ss_pred ---------------------------------------------cHHHHHHHhhhheeccCCCcccceEEEeccchhhh
Confidence 45599999999999999999999999999999999
Q ss_pred eccCHHHHHHHHHhhHHHHHHHhhhccCCCCceeeeeeeeEEEEEccCC---CCceEEEEEEeccCCCCCceeEEEecCc
Q psy18037 1285 KEMSRLEMDSFLTFAPNYYNYVKNCFENSSPTLLCKIFGVFRVICQNNN---SKTRSNLLVMENLFHSRNIKLRFDLKGS 1361 (1390)
Q Consensus 1285 Ktis~~E~~~fl~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~i~~~~~~---~~~k~~~iVMeNlf~~~~i~~~yDLKGS 1361 (1390)
|||++.|...|..++-.|+.|+.. ||.|+||||||+|+|+++..- +..|+||||||||||+..|+++||||||
T Consensus 391 Kti~hsE~~~~r~~~~eY~~~V~~----np~T~l~ki~G~yrv~~~~s~~~~k~~K~~fiVMeNlf~~~~i~~ifDLKGS 466 (612)
T COG5253 391 KTISHSEHICFRPMIFEYYVHVLF----NPLTLLCKIFGFYRVKSRSSISSSKSRKIYFIVMENLFYPHGIHRIFDLKGS 466 (612)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHc----CchHHHHHHhceeEEeccccccccccceeEEEEecccCCCCCcceEEeccCc
Confidence 999999995554444444444443 688999999999999998742 5689999999999999999999999999
Q ss_pred ccCCccCCCCCCCCCCCccccCCccccC
Q psy18037 1362 LRNRLVDTSLDSMDSDAVNFGQNEEIYL 1389 (1390)
Q Consensus 1362 ~~~R~~~~~~~~~~~~~vllD~n~~~~~ 1389 (1390)
|+||+++.+ |+. ..||+|+|+++||
T Consensus 467 ~~Nr~ve~~-gk~--~s~l~~mndv~wI 491 (612)
T COG5253 467 MRNRHVERT-GKS--MSVLLDMNDVEWI 491 (612)
T ss_pred hhhhhhhhh-ccc--cchhccchhHHHH
Confidence 999999885 665 8999999999987
No 4
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.5e-40 Score=404.75 Aligned_cols=264 Identities=30% Similarity=0.509 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCC-C-CCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQ-N-IDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH 204 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~-~-~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ah 204 (1390)
...+.++++++|.+|.+. +|.+.|++++++|+..+.++. + ...+|+++||+|+|++||++.||++|+|++|+|+++|
T Consensus 144 ~~~l~~i~~t~l~sk~~~-~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~ 222 (525)
T TIGR02344 144 DAAMLKLIQSCIGTKFVS-RWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTH 222 (525)
T ss_pred HHHHHHHHHHhhccccch-hHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCC
Confidence 345788999999999986 999999999999999998764 2 3478998899999999999999999999999999999
Q ss_pred CCCcceecCCcEEEEEeeeeccccccc-------ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHH
Q psy18037 205 KSMLTALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQ 277 (1390)
Q Consensus 205 k~M~~~i~nprIlLL~~~Ley~r~e~k-------~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~ 277 (1390)
++||+.++||||+|++|||||++++.+ ..++++++++|++|++++|++|++.||+||+++|+|+++|+++|.+
T Consensus 223 ~~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~ 302 (525)
T TIGR02344 223 PKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLK 302 (525)
T ss_pred CCCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhH
Confidence 999999999999999999999988764 3578899999999999999999999999999999999999999999
Q ss_pred cCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccc-cceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHH
Q psy18037 278 LGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGT-CSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRK 356 (1390)
Q Consensus 278 ~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~-c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~ 356 (1390)
+||++++++++.+|+|||++|||+++++++ .+++..||+ |+.|+++++ +.++|++|+||+ ...+|||+|||++..
T Consensus 303 ~~I~av~~v~~~~LerIa~~tGa~ii~~l~-~l~~~~lG~~~~~v~~~~i--g~~~~~~~~g~~-~~~~~TIlLrG~t~~ 378 (525)
T TIGR02344 303 ANISAIRRVRKTDNNRIARACGATIVNRPE-ELRESDVGTGCGLFEVKKI--GDEYFTFFTECK-DPKACTILLRGASKD 378 (525)
T ss_pred CCceEEecCCHHHHHHHHHHhCCeEecchh-hCCHhhcCCcCCEEEEEEE--CCeEEEEEEcCC-CCCEEEEEEEcCCHH
Confidence 999999999999999999999999999999 788899999 999999999 999999999999 568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 357 ELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 357 ~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+|+|+||+++||++++++ .+++++..+++++..++|+++
T Consensus 379 ~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~ 430 (525)
T TIGR02344 379 VLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQ 430 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHH
Confidence 999999999999999998 578899999988776666544
No 5
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=5.2e-37 Score=379.00 Aligned_cols=264 Identities=24% Similarity=0.352 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCC-CC-CCCCcccceEEEEecCCCCCcceeEEeEEEeeccCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQ-NI-DSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH 204 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~-~~-~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ah 204 (1390)
.+.+.++++++|.+|.+...|.+.|++++++|+..+.+.. .+ ..+|++ +|+|+|++||++.||++++|++|++++.|
T Consensus 144 ~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~ 222 (519)
T TIGR02339 144 RDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLD-NIKIEKKTGGSIDDTELVEGIVVDKEPVH 222 (519)
T ss_pred HHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHH-HeEEEEccCcChhcceeEeeEEEecCCCC
Confidence 4678999999999998822899999999999999987522 12 257885 69999999999999999999999999999
Q ss_pred CCCcceecCCcEEEEEeeeeccccccc-------ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHH
Q psy18037 205 KSMLTALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQ 277 (1390)
Q Consensus 205 k~M~~~i~nprIlLL~~~Ley~r~e~k-------~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~ 277 (1390)
++|+++++||||+|++|+|||++++.+ ..++.+++++|++|++++|++|++.||+||+++++|++.|+++|.+
T Consensus 223 ~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~ 302 (519)
T TIGR02339 223 PGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAK 302 (519)
T ss_pred CCCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHH
Confidence 999999999999999999999998753 3568889999999999999999999999999999999999999999
Q ss_pred cCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHH
Q psy18037 278 LGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKE 357 (1390)
Q Consensus 278 ~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~ 357 (1390)
+||++++++++.+|+|||++|||+++++++ .+.+..||+|+.|+++++ ++++|++|+||. ...+|||+|||++..+
T Consensus 303 ~gI~~v~~v~~~~L~rIa~~tGa~ii~~~~-~l~~~~LG~~~~v~~~~i--g~~~~~~~~~~~-~~~~~TI~lrG~t~~~ 378 (519)
T TIGR02339 303 AGILAVRRVKKSDIEKLARATGAKIVSSIK-EITESDLGYAGLVEERKV--GDDKMTFVEGCK-NPKAVTILLRGGTEHV 378 (519)
T ss_pred CCCEEEecCCHHHHHHHHHHhCCEEeCchh-hCChhhccCCceEEEEEE--CCeEEEEEEcCC-CCCEEEEEEECCCHHH
Confidence 999999999999999999999999999999 788889999999999999 999999999998 5789999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 358 LMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 358 L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
|+|+||+++||++++++ .+++++..+++++..+.++++
T Consensus 379 l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~ 429 (519)
T TIGR02339 379 VDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQ 429 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHH
Confidence 99999999999999998 699999999988766555443
No 6
>KOG0364|consensus
Probab=100.00 E-value=3.9e-38 Score=356.26 Aligned_cols=263 Identities=28% Similarity=0.449 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
...+..++..+..++..+ .|++.+..++++|+.+|..+ .+.++||.+|+|+.|||||.+.||++++||.+.|.+.|.+
T Consensus 147 ~~km~~vi~~~v~tk~~~-~~~~~~~~lal~avk~V~~~-~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpk 224 (527)
T KOG0364|consen 147 QAKMLRVINSSVGTKFNS-RWSDLICNLALDAVKTVGVE-NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPK 224 (527)
T ss_pred HHHHHhhhhhhhhhhhhh-hhcchhhhHHHHHHHHhhhc-cCceechhhhccccccCcccccccceecceeeccccCcHH
Confidence 446677888888888887 99999999999999999865 4558999999999999999999999999999999999999
Q ss_pred CcceecCCcEEEEEeeeeccccccc-------ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcC
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLG 279 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~k-------~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~G 279 (1390)
|.+.|+||||.||+|||||.+.+++ -.++..+++-|+||++.++..|+.++||||+++|||+|+|++||.++|
T Consensus 225 mrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~ 304 (527)
T KOG0364|consen 225 MRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKAN 304 (527)
T ss_pred HHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcC
Confidence 9999999999999999999998874 246889999999999999999999999999999999999999999999
Q ss_pred CEEEEccChhHHHHHHHHhCCeEeeecccccCCccccc-cceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHH
Q psy18037 280 ITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGT-CSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKEL 358 (1390)
Q Consensus 280 I~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~-c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L 358 (1390)
|++++++++.+-.||||++||.|++..+ ++.+...|+ |+.|+++++ |+..|.||..|.+ ++.|||+|||++..+|
T Consensus 305 iT~~rr~rKtDn~ria~acga~iv~rpe-dl~e~dvGt~agLf~~kK~--gdeyf~f~~~Ck~-pkaCtillrg~skdil 380 (527)
T KOG0364|consen 305 ITAIRRLRKTDNNRIARACGARIVNRPE-DLPERDVGTGAGLFEVKKI--GDEYFTFFTDCKE-PKACTILLRGPSKDIL 380 (527)
T ss_pred chhhhhhhccccchhhhhcCceeccChh-hCchhccCcccceeeeecc--CchhhhhhhhcCC-CcceEEEeccCchhHH
Confidence 9999999999999999999999999999 788888995 999999999 9999999999994 7899999999999999
Q ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 359 MKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 359 ~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
.|++|.++||+.|++| .|+..|..+.+.+....|.++
T Consensus 381 ~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVek 430 (527)
T KOG0364|consen 381 NEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEK 430 (527)
T ss_pred HHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhc
Confidence 9999999999999999 688899999988777777666
No 7
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.8e-36 Score=374.29 Aligned_cols=263 Identities=24% Similarity=0.374 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCC-CCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQN-IDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHK 205 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~-~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk 205 (1390)
.+.+..++++++.+|.++ .|.+.|++++++|+..+.++.. ...+|++ +|+|+|++||+++||++++|+||++++.|+
T Consensus 143 ~~~l~~va~ts~~sk~~~-~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~-~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~ 220 (517)
T cd03343 143 KDTLRKIAKTSLTGKGAE-AAKDKLADLVVDAVLQVAEKRDGKYVVDLD-NIKIEKKTGGSVDDTELIRGIVIDKEVVHP 220 (517)
T ss_pred HHHHHHHHHHhhcccchh-hHHHHHHHHHHHHHHHhhhccCCCccccHH-HeeEEeecCcCHHHcceeeeEEEeccCCCC
Confidence 467888999999999986 8999999999999999865422 2368884 799999999999999999999999999999
Q ss_pred CCcceecCCcEEEEEeeeeccccccc-------ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHc
Q psy18037 206 SMLTALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQL 278 (1390)
Q Consensus 206 ~M~~~i~nprIlLL~~~Ley~r~e~k-------~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~ 278 (1390)
.|++.++||||++++++|||++++.+ ..++++++++|++|++++|++|++.|++||+++++|++.|++||.++
T Consensus 221 ~m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~ 300 (517)
T cd03343 221 GMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA 300 (517)
T ss_pred CCccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC
Confidence 99999999999999999999998753 34588899999999999999999999999999999999999999999
Q ss_pred CCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHH
Q psy18037 279 GITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKEL 358 (1390)
Q Consensus 279 GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L 358 (1390)
||++++++++.+|+|||++|||+++++++ .+++..||+|+.|+++++ ++++|++|+||. ...+|||+|||++..++
T Consensus 301 gI~~v~~v~~~~l~~Ia~~tGa~ii~~~~-~l~~~~LG~~~~v~~~~i--g~~~~~~~~~~~-~~~~~TI~lrG~t~~~l 376 (517)
T cd03343 301 GILAVRRVKKSDMEKLARATGAKIVTNID-DLTPEDLGEAELVEERKV--GDDKMVFVEGCK-NPKAVTILLRGGTEHVV 376 (517)
T ss_pred CcEEEEeCCHHHHHHHHHHhCCEEecchh-hCChhhCCccceEEEEEE--CCeEEEEEEcCC-CCceEEEEEECCcHHHH
Confidence 99999999999999999999999999999 788889999999999999 999999999999 46799999999999999
Q ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 359 MKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 359 ~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+|+||.++||++++++ .+++++..+++++...+|+++
T Consensus 377 ~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~ 426 (517)
T cd03343 377 DELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQ 426 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHH
Confidence 9999999999999998 699999999988776555544
No 8
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.9e-36 Score=372.79 Aligned_cols=264 Identities=20% Similarity=0.264 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
.+.+.++++++|.+|.. ..|.+.|+.++++|+..+... ++..+|+. +|+|+|++||++.||++++|++|++++.|+.
T Consensus 153 ~~~l~~ia~tsl~sk~~-~~~~~~~s~i~v~av~~i~~~-~~~~~d~~-~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~ 229 (526)
T cd03339 153 KEPLIQTAMTSLGSKIV-SRCHRQFAEIAVDAVLSVADL-ERKDVNFE-LIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQ 229 (526)
T ss_pred HHHHHHHHHHhhcccch-hhHHHHHHHHHHHHHHHHhhc-CCCccchH-HeEEEEecCcCHHHcceeeeEEEecccCCCC
Confidence 45688999999999855 489999999999999988532 23356764 6999999999999999999999999999999
Q ss_pred CcceecCCcEEEEEeeeeccccccc-------ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcC
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLG 279 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~k-------~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~G 279 (1390)
||+.++||||+|++|+|||++++.+ ..+++.++++|++|++.++++|++.|++||+++++|++.|++||.++|
T Consensus 230 m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~ 309 (526)
T cd03339 230 MPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG 309 (526)
T ss_pred CCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC
Confidence 9999999999999999999987642 345788999999999999999999999999999999999999999999
Q ss_pred CEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHHH
Q psy18037 280 ITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELM 359 (1390)
Q Consensus 280 I~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L~ 359 (1390)
|+++++++..+|+|||++|||.++++++ .++..+||+|+.|+++.+....++++||+||+ ...+|||+|||+++.+|+
T Consensus 310 I~av~~v~~~~LerIa~~tGa~ii~~l~-~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~-~~~~~TIllrG~t~~~l~ 387 (526)
T cd03339 310 LPAVRWVGGVEIELIAIATGGRIVPRFE-DLSPEKLGKAGLVREISFGTTKDKMLVIEGCP-NSKAVTIFIRGGNKMIIE 387 (526)
T ss_pred CEEEEeCCHHHHHHHHHHhCCEEecchh-hCChhhcccCceEEEEEecCCCcEEEEEECCC-CCCEEEEEEECCCHHHHH
Confidence 9999999999999999999999999999 78889999999999999921147999999999 578999999999999999
Q ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 360 KVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 360 evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
|+||+++||++++++ .+++++..+++++....|+++
T Consensus 388 E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~ 436 (526)
T cd03339 388 EAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQ 436 (526)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHH
Confidence 999999999999998 689999999988766555443
No 9
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=3.3e-36 Score=330.49 Aligned_cols=207 Identities=32% Similarity=0.457 Sum_probs=195.6
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCCC
Q psy18037 128 SHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSM 207 (1390)
Q Consensus 128 ~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~M 207 (1390)
+.+.+++++.+.+|. + +|.+.|++++++|+..+.++. . ++..+||+|++++||++.||++++|++|+|+++|+.|
T Consensus 2 ~~l~~ia~ts~~sk~-~-~~~~~l~~l~~~Av~~v~~~~--~-~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m 76 (209)
T cd03333 2 ELLLQVATTSLNSKL-S-SWDDFLGKLVVDAVLKVGPDN--R-MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM 76 (209)
T ss_pred hHHHHHHHHHhccch-h-hHHHHHHHHHHHHHHHhhccC--C-CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC
Confidence 467889999999999 4 999999999999999998643 2 4555789999999999999999999999999999999
Q ss_pred cceecCCcEEEEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccC
Q psy18037 208 LTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVK 287 (1390)
Q Consensus 208 ~~~i~nprIlLL~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK 287 (1390)
|+.++||||+|++|+||| |||++++|++.|+++|.++||+++++++
T Consensus 77 ~~~~~n~~Ill~~~~le~----------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~~ 122 (209)
T cd03333 77 PKRLENAKILLLDCPLEY----------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRVK 122 (209)
T ss_pred CeEcCCCcEEEEeCCeeE----------------------------------EEEecCcccHHHHHHHHHCCCEEEEeCC
Confidence 999999999999999999 9999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q psy18037 288 TTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSF 367 (1390)
Q Consensus 288 ~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L~evKr~l~d 367 (1390)
+.+|+|||++|||+++++++ +++.++||+|+.|+++++ +++++++|+||. ...+|||+|||++..+|+|+||+++|
T Consensus 123 ~~~l~~ia~~tga~ii~~~~-~~~~~~lG~~~~v~~~~~--~~~~~~~~~~~~-~~~~~tIllrG~t~~~l~e~kr~l~d 198 (209)
T cd03333 123 KEDLERIARATGATIVSSLE-DLTPEDLGTAELVEETKI--GEEKLTFIEGCK-GGKAATILLRGATEVELDEVKRSLHD 198 (209)
T ss_pred HHHHHHHHHHHCCEEecccc-cCChhhceeeeEEEEEEE--CCeEEEEEEcCC-CCCEEEEEEECCCHhHHHHHHHHHHH
Confidence 99999999999999999999 789999999999999999 999999999999 57899999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy18037 368 MIYVLYNWKL 377 (1390)
Q Consensus 368 al~vv~n~~L 377 (1390)
|++++|++..
T Consensus 199 al~~~~~~~~ 208 (209)
T cd03333 199 ALCAVRAAVE 208 (209)
T ss_pred HHHHHHHHhh
Confidence 9999999753
No 10
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=6.4e-37 Score=355.93 Aligned_cols=168 Identities=35% Similarity=0.512 Sum_probs=153.2
Q ss_pred CCCCcceeeecCCCcceEEEEccHHHHHHHHHhhCCCChhHHHhhhhhhhhhcccCCCCCCcccccCchHHHHhhhcccc
Q psy18037 1168 CKIPHIDIKFSDTAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLE 1247 (1390)
Q Consensus 1168 ~~~~h~~~~f~~~~~~~~~~~y~~~~F~~lR~~~~~~~~~~~~~Sl~r~~~~~~~~gksgs~f~~t~d~~~~~~e~~~~~ 1247 (1390)
....|.+++|.+..+.|.|++|+|.+|++||+++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~Y~P~~F~~lR~~~~i-------------------------------------------- 49 (342)
T smart00330 14 PTPGHLELTPSHGSADFKFKDYCPEVFRNLRELFGI-------------------------------------------- 49 (342)
T ss_pred cCCCcccccCCCCCccEEEEEeCHHHHHHHHHHcCC--------------------------------------------
Confidence 445678889999999999999999999999999987
Q ss_pred cChHHHHHHhhhccc-ccccCCCCCCceeeecCCceEEeccCHHHHHHHHHhhHHHHHHHhhhccCCCCceeeeeeeeEE
Q psy18037 1248 KGEESFIRSLSRCIR-WEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNCFENSSPTLLCKIFGVFR 1326 (1390)
Q Consensus 1248 ~~~~~fi~SL~~~~~-~~~~gGKSgs~F~~T~D~rfiiKtis~~E~~~fl~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~ 1326 (1390)
++++|++||++|.. |.++||||||+||+|.|+|||||||++.|++.|+++||+||+||.+ ||+|||+||||+|+
T Consensus 50 -~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti~~~E~~~l~~~lp~Y~~~~~~----n~~SlL~ki~Gly~ 124 (342)
T smart00330 50 -DPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSKSEIKSLLPMLPNYYEHIVQ----NPNTLLPKFFGLYR 124 (342)
T ss_pred -CHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHHh----CCCcchhhhcEEEE
Confidence 68899999999986 9999999999999999999999999999999999999999999997 89999999999999
Q ss_pred EEEccCCCCceEEEEEEeccCC-CCCceeEEEecCcccCCccCCCCCCCCCCCccccCCccc
Q psy18037 1327 VICQNNNSKTRSNLLVMENLFH-SRNIKLRFDLKGSLRNRLVDTSLDSMDSDAVNFGQNEEI 1387 (1390)
Q Consensus 1327 i~~~~~~~~~k~~~iVMeNlf~-~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~vllD~n~~~ 1387 (1390)
|.+++. +..++|||||+|||+ +..|+++||||||++||++++... ....||+|.||.+
T Consensus 125 i~~~~~-~~~~~~fiVM~NlF~~~~~i~~~yDLKGS~~~R~~~~~~~--~~~~vlkD~df~~ 183 (342)
T smart00330 125 VKVKGG-TEKKIYFLVMENLFYSDLKVHRKYDLKGSTRGREADKKKV--KELPVLKDLDLVE 183 (342)
T ss_pred EEECCC-cceeEEEEEEecCCCCCCceeEEEECCCCCCCCCcCcccc--CCCCcccccchhh
Confidence 998754 246899999999999 459999999999999999976333 3489999999984
No 11
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.6e-35 Score=366.23 Aligned_cols=257 Identities=23% Similarity=0.316 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
.+.+.++++++|++|..+ .|.+.|++++++|+..+.. .+|++ +|+|.+++||++.||.+++|+|+++++.| .
T Consensus 158 ~~~l~~va~t~l~sk~~~-~~~~~l~~i~~~av~~i~~-----~~~~~-~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~ 229 (533)
T PTZ00212 158 KEDLLNIARTTLSSKLLT-VEKDHFAKLAVDAVLRLKG-----SGNLD-YIQIIKKPGGTLRDSYLEDGFILEKKIGV-G 229 (533)
T ss_pred HHHHHHHHHHHhcccccc-hhHHHHHHHHHHHHHHHhc-----cCCcc-ceEEEEecCcCccccEEEEeEEEecccCC-C
Confidence 467889999999999765 8999999999999998863 35654 59999999999999999999999999887 5
Q ss_pred CcceecCCcEEEEEeeeecccccc--------cccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHc
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEG--------KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQL 278 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~--------k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~ 278 (1390)
||++++||||+|++|||||++.+. ++.++..+.++|++++++++.+|++.|+|+|+++++|++.|+++|.++
T Consensus 230 ~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~ 309 (533)
T PTZ00212 230 QPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA 309 (533)
T ss_pred CCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC
Confidence 899999999999999999999873 345678888999999999999999999999999999999999999999
Q ss_pred CCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHH
Q psy18037 279 GITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKEL 358 (1390)
Q Consensus 279 GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L 358 (1390)
||+++++++..+|+|||++|||.++++++ .+++.+||+|+.|+++.+ +.++|++|+||+ ...+|||+|||+|+.+|
T Consensus 310 ~I~avr~v~~~~l~rIa~~tGa~iis~l~-~~~~~~LG~~~~v~~~~i--g~~~~~~~~~~~-~~~~~TI~lrG~t~~~l 385 (533)
T PTZ00212 310 GIMAIEHADFDGMERLAAALGAEIVSTFD-TPEKVKLGHCDLIEEIMI--GEDKLIRFSGCA-KGEACTIVLRGASTHIL 385 (533)
T ss_pred CCEEEecCCHHHHHHHHHHhCCEEeecCC-CCCHHHccCCceEEEEEE--CCeEEEEEEccC-CCCEEEEEEECCChhHH
Confidence 99999999999999999999999999999 788899999999999999 899999999999 57899999999999999
Q ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 359 MKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 359 ~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+|+||.++||++++++ .+++++..+++++..+.|+++
T Consensus 386 ~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~ 435 (533)
T PTZ00212 386 DEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKS 435 (533)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHH
Confidence 9999999999999998 689999999998876556544
No 12
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.3e-35 Score=363.26 Aligned_cols=258 Identities=21% Similarity=0.316 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
++.+.++++++|.+|.++ .+.+.|++++++|+..+.+ .+|. ++|+|++++||++.||++++|+||++++++..
T Consensus 148 ~~~l~~ia~t~l~sK~~~-~~~~~l~~l~~~A~~~v~~-----~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~ 220 (522)
T cd03340 148 RELLEKCAATALNSKLIA-SEKEFFAKMVVDAVLSLDD-----DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAG 220 (522)
T ss_pred HHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHhcc-----cCCh-hHheEeeecCCChhhceeeeeEEEecccCccc
Confidence 456889999999999886 8999999999999999864 3455 47999999999999999999999999999654
Q ss_pred ---CcceecCCcEEEEEeeeeccccccc-------ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHH
Q psy18037 207 ---MLTALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQ 276 (1390)
Q Consensus 207 ---M~~~i~nprIlLL~~~Ley~r~e~k-------~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~ 276 (1390)
||++++||||++++++||+.+.+.+ +..++.++++|++++.+++++|++.|+|||+++++|++.|++||.
T Consensus 221 ~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~ 300 (522)
T cd03340 221 FEQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFA 300 (522)
T ss_pred cccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHH
Confidence 6999999999999999999987542 234788899999999999999999999999999999999999999
Q ss_pred HcCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHH
Q psy18037 277 QLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRK 356 (1390)
Q Consensus 277 ~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~ 356 (1390)
++||+++.+|+..+|+|||++|||+++++++ .+++..||+|+.|+++++ ++++|++|+||+ ...+|||+|||++..
T Consensus 301 ~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~-~l~~~~LG~~~~v~~~~i--g~~~~~~~~~~~-~~~~~TIllrG~t~~ 376 (522)
T cd03340 301 DRDIFCAGRVPEEDLKRVAQATGGSIQTTVS-NITDDVLGTCGLFEERQV--GGERYNIFTGCP-KAKTCTIILRGGAEQ 376 (522)
T ss_pred HCCcEEEEeCCHHHHHHHHHHHCCEEeeccc-cCCccccccceEEEEEEE--CCEEEEEEECCC-CCceEEEEEECCCHH
Confidence 9999999999999999999999999999999 788899999999999999 999999999999 578999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 357 ELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 357 ~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+|+|+||+++||++++++ .+++++..+++++....|+++
T Consensus 377 ~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~ 428 (522)
T cd03340 377 FIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ 428 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH
Confidence 999999999999999998 689999999988766555444
No 13
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.5e-35 Score=364.51 Aligned_cols=264 Identities=19% Similarity=0.279 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCC-CCCC-CCCCcccceEEEEecCCCCCcceeEEeEEEeeccCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKP-DQNI-DSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH 204 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~p-d~~~-~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ah 204 (1390)
.+.+.++++++|.+|.++ .+.+.|++++++|+..+.. +.++ ..+|++ +|+|++++||++.||++++|+||+++++|
T Consensus 137 ~~~l~~ia~tsl~sK~~~-~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~-~I~i~~~~Ggs~~~s~li~Givi~~~~~~ 214 (527)
T cd03335 137 KESLINVAKTSMSSKIIG-ADSDFFANMVVDAILAVKTTNEKGKTKYPIK-AVNILKAHGKSAKESYLVNGYALNCTRAS 214 (527)
T ss_pred HHHHHHHHHHHhcccccc-hhHHHHHHHHHHHHHHhhcccccCCCccCHH-HeEEEEecCcChhhcceeeeEEEecccCC
Confidence 567899999999999986 7899999999999999853 2222 247885 69999999999999999999999999999
Q ss_pred CCCcceecCCcEEEEEeeeecccccc-------cccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHH
Q psy18037 205 KSMLTALNNPKILILQCAIVYQRVEG-------KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQ 277 (1390)
Q Consensus 205 k~M~~~i~nprIlLL~~~Ley~r~e~-------k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~ 277 (1390)
.+||+.++||||++++|+|++.+.+. +...++.+.++|++++++++++|++.|++|||++++|++.|++||.+
T Consensus 215 ~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~ 294 (527)
T cd03335 215 QGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVE 294 (527)
T ss_pred CCCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHH
Confidence 99999999999999999999988764 23568889999999999999999999999999999999999999999
Q ss_pred cCCEEEEccChhHHHHHHHHhCCeEeeeccc-----ccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEec
Q psy18037 278 LGITLVLNVKTTVLERIARCTRADLVYSVDV-----LLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRG 352 (1390)
Q Consensus 278 ~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~-----~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG 352 (1390)
+||++++++++.+|+|||++|||+++++++. .+++..||+|+.|+++++ +.++|++|+||. ...+|||+|||
T Consensus 295 ~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~i--g~~~~~~i~g~~-~~~~~TIllrG 371 (527)
T cd03335 295 AGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERI--GDDELILIKGTK-KRSSASIILRG 371 (527)
T ss_pred CCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEE--CCeEEEEEEcCC-CCCEEEEEEeC
Confidence 9999999999999999999999999999862 133458999999999999 999999999999 57899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 353 ASRKELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 353 ~s~~~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+|+.+|+|+||.++||++++++ .+++++..+++++..+.|+++
T Consensus 372 ~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~ 427 (527)
T cd03335 372 ANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ 427 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHH
Confidence 9999999999999999999998 799999999998877666544
No 14
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=1.4e-36 Score=348.81 Aligned_cols=157 Identities=42% Similarity=0.674 Sum_probs=144.0
Q ss_pred CCcceEEEEccHHHHHHHHHhhCCCChhHHHhhhhhhhhhcccCCCCCCcccccCchHHHHhhhcccccChHHHHHHhhh
Q psy18037 1180 TAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEKGEESFIRSLSR 1259 (1390)
Q Consensus 1180 ~~~~~~~~~y~~~~F~~lR~~~~~~~~~~~~~Sl~r~~~~~~~~gksgs~f~~t~d~~~~~~e~~~~~~~~~~fi~SL~~ 1259 (1390)
....|+|++|+|.+|++||+++|+ ++++|+.|||+
T Consensus 53 ~~~~f~fk~Y~P~vF~~lR~~~gi---------------------------------------------~~~dy~~Sl~~ 87 (313)
T cd00139 53 LSADFKFKDYCPEVFRALRELFGI---------------------------------------------DEADYLRSLCR 87 (313)
T ss_pred CCccEEEEEeCHHHHHHHHHHcCC---------------------------------------------CHHHHHHHhcC
Confidence 356899999999999999999997 68899999999
Q ss_pred ccccccc-CCCCCCceeeecCCceEEeccCHHHHHHHHHhhHHHHHHHhhhccCCC-CceeeeeeeeEEEEEccCCCCce
Q psy18037 1260 CIRWEAR-GGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNCFENSS-PTLLCKIFGVFRVICQNNNSKTR 1337 (1390)
Q Consensus 1260 ~~~~~~~-gGKSgs~F~~T~D~rfiiKtis~~E~~~fl~~~p~Yf~y~~~~~~~~~-~TlL~ki~G~y~i~~~~~~~~~k 1337 (1390)
|..|..+ ||||||+||+|.|+|||||||++.|++.|+++||+||+||.+ || +|||+||||+|+|++.+. .+.+
T Consensus 88 ~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~~~~~~----n~~~TLL~k~~Gl~~i~~~~~-~~~~ 162 (313)
T cd00139 88 SPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYYEYITQ----NPQNTLLPKFFGLYRVKVKSG-TGKK 162 (313)
T ss_pred CCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHHh----CCCCcchhhheEEEEEEEcCC-CCce
Confidence 9999875 999999999999999999999999999999999999999998 88 999999999999999842 3678
Q ss_pred EEEEEEeccCCC-CCceeEEEecCcccCCccCCCCCCCCCCCccccCCccc
Q psy18037 1338 SNLLVMENLFHS-RNIKLRFDLKGSLRNRLVDTSLDSMDSDAVNFGQNEEI 1387 (1390)
Q Consensus 1338 ~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~~~~~~~~~vllD~n~~~ 1387 (1390)
+|||||+|||++ ..|+++||||||+++|.+++. ++.....||+|.||.+
T Consensus 163 ~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~-~~~~~~~vlKD~df~~ 212 (313)
T cd00139 163 VDFLVMENLFYSRLKIHRKYDLKGSTRNREASKK-EKQKENPVLKDLNLLE 212 (313)
T ss_pred EEEEEEecCCCCCccceEEEECCCCCCCCCcCcc-cccCCccccchhhhHh
Confidence 999999999999 599999999999999999874 4444589999999986
No 15
>KOG0361|consensus
Probab=100.00 E-value=3.4e-36 Score=335.06 Aligned_cols=259 Identities=20% Similarity=0.322 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCC
Q psy18037 126 FESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHK 205 (1390)
Q Consensus 126 ~~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk 205 (1390)
.++.|.+++.|+|+||.+. ...++|+.++++|+..+. ++.|. ++|.||||+||++.||.+|+||.|.|.+.+.
T Consensus 151 ~r~lL~KcA~T~lsSKlI~-~ek~fF~~MvVDAV~~ld-----~~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYA 223 (543)
T KOG0361|consen 151 LRELLEKCAATALSSKLIR-QEKEFFAKMVVDAVLTLD-----NDLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYA 223 (543)
T ss_pred HHHHHHHHHHHHhhhhhhh-hhHHHHHHHHHHHHHhhc-----cccch-hhcceeecCCCccchhhhccceeeeehcccc
Confidence 3678889999999999997 899999999999999875 23454 5799999999999999999999999999987
Q ss_pred C---CcceecCCcEEEEEeeeecccccc-------cccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHH
Q psy18037 206 S---MLTALNNPKILILQCAIVYQRVEG-------KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESL 275 (1390)
Q Consensus 206 ~---M~~~i~nprIlLL~~~Ley~r~e~-------k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L 275 (1390)
+ .|+++.||||++|+..||....+. ++..++.++..|+..|..+.++|...|.||||+.-.|.|+|.+||
T Consensus 224 GfEqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyF 303 (543)
T KOG0361|consen 224 GFEQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYF 303 (543)
T ss_pred chhhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHh
Confidence 5 589999999999999999875442 356789999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCH
Q psy18037 276 QQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASR 355 (1390)
Q Consensus 276 ~~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~ 355 (1390)
++++|.+..||...+|.|+..++|+.|.++.. ++.+..||+|+.|+++++ |...|-+|+||+ ..+.||++|||+-+
T Consensus 304 AdrdiFCAGRV~~eDl~Rv~~acGGsi~tt~~-~i~~~~LG~C~~FeE~Qv--G~eRyN~Fegcp-~aktcTliLRGgae 379 (543)
T KOG0361|consen 304 ADRDIFCAGRVPEEDLNRVMQACGGSIQTTVS-DIKEEVLGTCALFEERQV--GGERYNLFEGCP-KAKTCTLILRGGAE 379 (543)
T ss_pred hccCceecCcCCHHHHHHHHHhcCcchhhhhh-hcchhhcchhhhHHHHhh--cchhhhhhcCCC-ccceeEEEEeccHH
Confidence 99999999999999999999999999999999 799999999999999999 999999999999 68899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 356 KELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 356 ~~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+.++|++|++|||+++|++ +++|+|.+++++..++.|+.|
T Consensus 380 qfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q 432 (543)
T KOG0361|consen 380 QFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ 432 (543)
T ss_pred HHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHH
Confidence 9999999999999999997 799999999999999999987
No 16
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.6e-35 Score=358.40 Aligned_cols=257 Identities=21% Similarity=0.263 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
.+.+.++++++|++|.++ .|.+.|++++++|+..+.. .+|+ +.|+|++++||++.||++++|+|+++++.+ .
T Consensus 146 ~~~l~~ia~t~lssk~~~-~~~~~l~~l~~~A~~~v~~-----~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~ 217 (517)
T cd03336 146 REDLLNIARTTLSSKILT-QDKEHFAELAVDAVLRLKG-----SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-N 217 (517)
T ss_pred HHHHHHHHHhhccccccc-hhHHHHHHHHHHHHHHhhc-----cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-C
Confidence 467889999999999886 8999999999999998853 4566 369999999999999999999999999876 5
Q ss_pred CcceecCCcEEEEEeeeecccccc--------cccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHc
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEG--------KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQL 278 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~--------k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~ 278 (1390)
||+.++||||+|+++||||++++. .+.+++.+.++|++++++++.+|++.|+++|+++++|++.|++||.++
T Consensus 218 ~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~ 297 (517)
T cd03336 218 QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA 297 (517)
T ss_pred CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC
Confidence 899999999999999999998874 456678889999999999999999999999999999999999999999
Q ss_pred CCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHH
Q psy18037 279 GITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKEL 358 (1390)
Q Consensus 279 GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L 358 (1390)
||+++++++..+|+|||++|||.++++++ .+++.+||+|+.|++..+ |+++|++|+||+ ...+|||+|||+|+.+|
T Consensus 298 ~I~av~~v~~~~L~rIa~~tGa~ii~~l~-~~~~~~LG~~~~v~~~~i--g~~~~~~~~~~~-~~~~~TI~lrG~t~~~l 373 (517)
T cd03336 298 GIMAIEHADFDGVERLALVTGGEIASTFD-HPELVKLGTCKLIEEIMI--GEDKLIRFSGVA-AGEACTIVLRGASQQIL 373 (517)
T ss_pred CcEEEecCCHHHHHHHHHHhCCEEecccC-CCCcccccccceEEEEEE--CCeEEEEEEccC-CCceEEEEEeCCCHHHH
Confidence 99999999999999999999999999999 788899999999999999 999999999999 57899999999999999
Q ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 359 MKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 359 ~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+|+||.++||++++++ .+++++..+.+++..+.|+++
T Consensus 374 ~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~ 423 (517)
T cd03336 374 DEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKS 423 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHH
Confidence 9999999999999998 689999999988876666544
No 17
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.2e-35 Score=358.57 Aligned_cols=264 Identities=20% Similarity=0.293 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCC-C
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH-K 205 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ah-k 205 (1390)
.+++.++++++|.+|.++ .|.+.|+.++++|+..+.++...+.+|++ .|+|.|++||++.||++++|++|++++.| +
T Consensus 137 ~~~l~~va~tsl~sK~~~-~~~~~ls~l~~~a~~~v~~~~~~~~~~~~-~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~ 214 (517)
T TIGR02342 137 REILIKSATTSLSSKVVS-QYSSLLAPLAVDAVLKVIDPENDKNVDLN-DIKVVKKLGGTIDDTELIEGLVFTQKASRSA 214 (517)
T ss_pred HHHHHHHHHHHhccccch-hHHHHHHHHHHHHHHHHhccccCCccCHH-HeeEEeccCCChhhcEEEeeEEEeccccccC
Confidence 457899999999999776 99999999999999998753223468875 59999999999999999999999999999 5
Q ss_pred CCcceecCCcEEEEEeeeecccccc-------cccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc-----cHHHHH
Q psy18037 206 SMLTALNNPKILILQCAIVYQRVEG-------KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNV-----ARLAQE 273 (1390)
Q Consensus 206 ~M~~~i~nprIlLL~~~Ley~r~e~-------k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~V-----s~~A~~ 273 (1390)
+||++++||||++++|+|++.+++. .+.+++.++++|+++++.++++|++.|++||+++++| +++|++
T Consensus 215 ~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~ 294 (517)
T TIGR02342 215 GGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALH 294 (517)
T ss_pred CCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHH
Confidence 9999999999999999999988753 2356789999999999999999999999999999998 999999
Q ss_pred HHHHcCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecC
Q psy18037 274 SLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGA 353 (1390)
Q Consensus 274 ~L~~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~ 353 (1390)
||.++||++++++++.+|+|||++|||.++++++ .++..+||+|+.|+++++ ++++|++|+||++....|||+|||+
T Consensus 295 ~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~-~l~~~~LG~~~~v~~~~~--~~~~~~~i~~~~~~~~~~tIllrG~ 371 (517)
T TIGR02342 295 FLAKMKIMVVKDIEREEVEFICKTIGCKPIASID-HFTADKLGSAELVEEVTT--DGGKIIKITGIQNAGKTVTVLLRGS 371 (517)
T ss_pred HHhhCCceEEecCCHHHHHHHHHHHCCEEEcchh-hcCcccCcCCceEEEEEE--CCeEEEEEEccCCCCceEEEEEeCC
Confidence 9999999999999999999999999999999999 788899999999999998 8899999999985447999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 354 SRKELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 354 s~~~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
|+.+++|+||.++||++++++ .+++++..+++++....|.++
T Consensus 372 t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~ 426 (517)
T TIGR02342 372 NKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVES 426 (517)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHH
Confidence 999999999999999999998 688999999998876555544
No 18
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.7e-35 Score=359.14 Aligned_cols=264 Identities=21% Similarity=0.311 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
.+.+.+++++++.+|.++ +|.+.|++++++|+..+.++...+.+|++ .|+|.+++||++.||++++|++|++++.|+.
T Consensus 136 ~~~l~~va~ts~~sK~~~-~~~~~ls~li~~A~~~v~~~~~~~~~d~~-~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~ 213 (515)
T cd03338 136 RESLIKSATTSLNSKVVS-QYSSLLAPIAVDAVLKVIDPATATNVDLK-DIRIVKKLGGTIEDTELVDGLVFTQKASKKA 213 (515)
T ss_pred HHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHHhhcccccCcCCHH-HeEEEEecCCChhhceeeeeEEEeccccCcC
Confidence 356888999999999997 99999999999999999865323578986 5999999999999999999999999999986
Q ss_pred -CcceecCCcEEEEEeeeecccccc-------cccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc-----cHHHHH
Q psy18037 207 -MLTALNNPKILILQCAIVYQRVEG-------KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNV-----ARLAQE 273 (1390)
Q Consensus 207 -M~~~i~nprIlLL~~~Ley~r~e~-------k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~V-----s~~A~~ 273 (1390)
||+.++||||++++|||||.+.+. .+.+++.++.+|+++++.++++|++.|++||+|+++| +++|++
T Consensus 214 ~~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~ 293 (515)
T cd03338 214 GGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALH 293 (515)
T ss_pred CCCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHH
Confidence 599999999999999999987763 2346889999999999999999999999999999997 999999
Q ss_pred HHHHcCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecC
Q psy18037 274 SLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGA 353 (1390)
Q Consensus 274 ~L~~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~ 353 (1390)
||.++||++++++++.+|+|||++|||+++++++ .++...||+|+.|+++++ ++++|++|+||++...+|||+|||+
T Consensus 294 ~l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~-~l~~~~LG~~~~v~~~~~--g~~~~~~i~~~~~~~~~~TIllrG~ 370 (515)
T cd03338 294 FLAKLKIMVVKDIEREEIEFICKTIGCKPVASID-HFTEDKLGSADLVEEVSL--GDGKIVKITGVKNPGKTVTILVRGS 370 (515)
T ss_pred HHHHCCceEEecCCHHHHHHHHHHHCCEEecccc-cCCHhhCCCCceEEEEEE--CCeEEEEEEecCCCCceEEEEEeCC
Confidence 9999999999999999999999999999999999 788889999999999999 8899999999984257999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 354 SRKELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 354 s~~~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
++.+++|+||.++||++++++ .+++++..+++++....|+++
T Consensus 371 t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~ 425 (515)
T cd03338 371 NKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQ 425 (515)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHH
Confidence 999999999999999999998 689999999988765444433
No 19
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-34 Score=357.58 Aligned_cols=262 Identities=20% Similarity=0.243 Sum_probs=237.5
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
.+.+.++++++|.+|..+ .|.+.|+.++++|+..+.. .....+|++ +|+|+|++||++.||++++|++|++++.|..
T Consensus 157 ~~~l~~ia~t~l~sK~~~-~~~~~ls~i~~~av~~i~~-~~~~~~d~~-~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~ 233 (532)
T TIGR02343 157 KEPLIQAAKTSLGSKIVS-KCHRRFAEIAVDAVLMVAD-MERRDVDFD-LIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQ 233 (532)
T ss_pred HHHHHHHHHHhhccchhh-HHHHHHHHHHHHHHHhhhh-cCCCcCCHH-HeeEEEecCCCcccceeEeeEEEecCcCCCC
Confidence 356889999999998554 8999999999999998853 123467875 6999999999999999999999999999999
Q ss_pred CcceecCCcEEEEEeeeeccccccc----c---cchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcC
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEGK----L---LSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLG 279 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~k----~---~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~G 279 (1390)
||+.++||||+|++|+||+++++.+ + .+++.++++|+++++.++++|++.|++||+++++|++.|++||.++|
T Consensus 234 m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~ 313 (532)
T TIGR02343 234 MPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND 313 (532)
T ss_pred CCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC
Confidence 9999999999999999999988642 2 35677899999999999999999999999999999999999999999
Q ss_pred CEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCC--cEEEEEecCCCCCCeEEEEEecCCHHH
Q psy18037 280 ITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSN--KTLMFFEGCAFPHKGSTVILRGASRKE 357 (1390)
Q Consensus 280 I~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~--kt~i~fegc~~~~~g~TIlLRG~s~~~ 357 (1390)
|.++++++..+|+|||++|||.++++++ .+++..||+|+.|+++.+ |. +++++|+||+ ....|||+|||+|+.+
T Consensus 314 i~~v~~~~~~~l~~Ia~~tGa~~i~~l~-~~~~~~LG~a~~v~~~~i--g~~~~~~~~i~~~~-~~~~~TIllrG~t~~~ 389 (532)
T TIGR02343 314 LPAVRWVGGHELELIAIATGGRIVPRFE-ELSEDKLGKAGLVREISF--GTTKDRMLVIEQCK-NSKAVTIFIRGGNKMI 389 (532)
T ss_pred cEEEEcCCHHHHHHHHHHhCCEEecccc-cCCHhHCcccceEEEEEe--cCCcceEEEEECCC-CCCEEEEEEECCCHHH
Confidence 9999999999999999999999999999 788899999999999999 66 4899999999 4679999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 358 LMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 358 L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
|+|+||+++||++++++ .+++++..+++++..+.|+++
T Consensus 390 l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~ 440 (532)
T TIGR02343 390 IEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQ 440 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHH
Confidence 99999999999999998 688999999988776555544
No 20
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.3e-34 Score=352.78 Aligned_cols=261 Identities=18% Similarity=0.275 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
.+.+.+++++++.+|.++ .+.+.|++++++|+..+.++ +..+|+++ |+|.|++||+..||++++|++|++.+.|+.
T Consensus 145 ~~~l~~ia~tsl~sK~~~-~~~~~ls~iv~~Av~~v~~~--~~~i~~~~-I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~ 220 (531)
T TIGR02347 145 RELLLNVARTSLRTKLPI-DLADQLTEIVVDAVLAIKKD--GEQIDLFM-VEIMEMKHKSATDTTLIRGLVLDHGARHPD 220 (531)
T ss_pred HHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHHHhhc--CCCCChhH-eEEEEecCCCccccEEEeeEEEecCcCCCC
Confidence 456899999999999986 89999999999999999764 23577754 999999999999999999999999999999
Q ss_pred CcceecCCcEEEEEeeeeccccccc-------ccchHHHHHHHHHHHHHHHHHHHhcC-------CC---EEEecCCccH
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEYLRNVVARISALK-------PD---IVLVQRNVAR 269 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~k-------~~sle~ii~qE~eyL~~~V~rI~~~~-------pn---VVlv~k~Vs~ 269 (1390)
||+.+.||||+|++|+||+.+++.+ ...+..++.+|++|+++++++|++++ |+ ||+++++|++
T Consensus 221 ~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~ 300 (531)
T TIGR02347 221 MPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDP 300 (531)
T ss_pred CceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccH
Confidence 9999999999999999999987652 34578899999999999999999977 36 9999999999
Q ss_pred HHHHHHHHcCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEE
Q psy18037 270 LAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVI 349 (1390)
Q Consensus 270 ~A~~~L~~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIl 349 (1390)
.|++||.++||++++++++.+|+|||++|||.++++++ .+++..||+|+.|+++.+ +.++|++|+||. ....|||+
T Consensus 301 ~a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~-~~~~~~LG~~~~v~~~~i--g~~~~~~i~~~~-~~~~~TI~ 376 (531)
T TIGR02347 301 PSLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVE-DLTPECLGWAGLVYETSI--GEEKYTFIEEVK-NPKSCTIL 376 (531)
T ss_pred HHHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccc-cCCccccccceEEEEEEE--CCeEEEEEEcCC-CCCeEEEE
Confidence 99999999999999999999999999999999999999 788899999999999999 999999999998 46799999
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 350 LRGASRKELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 350 LRG~s~~~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
|||+|+.+|+|+||.++||++++++ .+++++..+++++..++|+++
T Consensus 377 lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~ 435 (531)
T TIGR02347 377 IKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAK 435 (531)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH
Confidence 9999999999999999999999998 689999999988776555544
No 21
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.2e-34 Score=350.85 Aligned_cols=230 Identities=30% Similarity=0.495 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCC--CCCCcccceEEEEecCCCCCcceeEEeEEEeeccCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNI--DSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH 204 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~--~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ah 204 (1390)
.+.+.++++++|.+|.++ .|.+.|++++++|+..+.++..+ .++|+++||+|++++||++.||++++|+||+++++|
T Consensus 144 ~~~l~~i~~t~l~sK~~~-~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~ 222 (480)
T cd03337 144 RAQMLKIIKSCIGTKFVS-RWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTH 222 (480)
T ss_pred HHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCC
Confidence 456899999999999987 99999999999999999876432 368998899999999999999999999999999999
Q ss_pred CCCcceecCCcEEEEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEE
Q psy18037 205 KSMLTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVL 284 (1390)
Q Consensus 205 k~M~~~i~nprIlLL~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~ 284 (1390)
++||++++||||+|++||||| ||+++++|++.|++||.++||++++
T Consensus 223 ~~m~~~~~n~kIlll~~~Le~----------------------------------lvi~~k~I~d~al~~L~~~~I~~v~ 268 (480)
T cd03337 223 PKMRRRIENPRIVLLDCPLEY----------------------------------LVITEKGVSDLAQHYLVKAGITALR 268 (480)
T ss_pred CCCCcEecCCCEEEEecCcce----------------------------------EEEeCCCccHHHHHHHHHCCcEEEE
Confidence 999999999999999999998 9999999999999999999999999
Q ss_pred ccChhHHHHHHHHhCCeEeeecccccCCccccc-cceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHHHHHHH
Q psy18037 285 NVKTTVLERIARCTRADLVYSVDVLLNQIHLGT-CSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363 (1390)
Q Consensus 285 nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~-c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L~evKr 363 (1390)
++++.+|+|||++|||+++++++ .+++.+||+ |+.|+++++ +.+++++|+||+ ...+|||+|||++..+|+|+||
T Consensus 269 ~v~~~~L~rIa~~tGa~ii~~~~-~l~~~~LG~~~~~~~~~~~--~~~~~~~i~~~~-~~~~~TIllrG~t~~~l~e~er 344 (480)
T cd03337 269 RVRKTDNNRIARACGATIVNRPE-ELTESDVGTGAGLFEVKKI--GDEYFTFITECK-DPKACTILLRGASKDVLNEVER 344 (480)
T ss_pred eCCHHHHHHHHHHHCCEEecchh-hCCHHHcCCcccEEEEEEe--CCeEEEEEEcCC-CCCEEEEEEECCCHHHHHHHHH
Confidence 99999999999999999999999 788899999 788888888 889999999999 4789999999999999999999
Q ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 364 VTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 364 ~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+++||++++++ .|++++..+.+++..++|+++
T Consensus 345 ~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~ 389 (480)
T cd03337 345 NLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQ 389 (480)
T ss_pred HHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHH
Confidence 99999999998 689999999998877666554
No 22
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.8e-34 Score=351.24 Aligned_cols=259 Identities=20% Similarity=0.326 Sum_probs=237.3
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCC-
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHK- 205 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk- 205 (1390)
.+++.++++++|.+|.++ .+.+.|++++++|+..+.++ .+|++ +|+|++++||++.||++++|++|++++++.
T Consensus 148 ~~~l~~va~tsl~sK~~~-~~~~~l~~l~~~A~~~v~~~----~~~~~-~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~ 221 (522)
T TIGR02345 148 REVLEKCAATALNSKLIA-HEKEFFSKMIVDAVLQLDID----DLDLK-LIGVKKVQGGSLQDSVLVNGVAFKKTFSYAG 221 (522)
T ss_pred HHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHHHhhc----cCChh-HheEEeecCCCHHhcceecceEEecccCccc
Confidence 367899999999999986 89999999999999998642 46764 799999999999999999999999998865
Q ss_pred --CCcceecCCcEEEEEeeeeccccccc-------ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHH
Q psy18037 206 --SMLTALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQ 276 (1390)
Q Consensus 206 --~M~~~i~nprIlLL~~~Ley~r~e~k-------~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~ 276 (1390)
.||+.++||||+|++++||+.+.+.. +..++.+++.|++++++++++|++.|++||+|+++|++.+++||.
T Consensus 222 ~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~ 301 (522)
T TIGR02345 222 FEQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFA 301 (522)
T ss_pred cccCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHH
Confidence 46999999999999999999987643 345778889999999999999999999999999999999999999
Q ss_pred HcCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHH
Q psy18037 277 QLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRK 356 (1390)
Q Consensus 277 ~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~ 356 (1390)
++||+++.+|+..+|+|||++|||+++++++ .+++..||+|+.|+++++ +.++|++|+||+ ...+|||+|||+|+.
T Consensus 302 ~~~I~~~~~v~~~dl~ria~~tga~ii~~~~-~l~~~~LG~~~~ie~~~~--~~~r~~~~~g~~-~~~~~TI~lrG~t~~ 377 (522)
T TIGR02345 302 DHNIFCAGRVSDEDLKRVVKACGGSIQSTTS-DLEADVLGTCALFEERQI--GSERYNYFTGCP-HAKTCTIILRGGAEQ 377 (522)
T ss_pred HCCcEEEecCCHHHHHHHHHHhCCeEEcchh-hCChhhccCCceEEEEEE--CCeEEEEEEcCC-CCceEEEEEECCCHH
Confidence 9999999999999999999999999999999 788889999999999999 999999999998 468999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 357 ELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 357 ~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+|+|+||.++||++++++ .+++++..+++++....|+++
T Consensus 378 ~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~ 429 (522)
T TIGR02345 378 FIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQ 429 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHH
Confidence 999999999999999998 688899999988766555544
No 23
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-33 Score=347.37 Aligned_cols=264 Identities=18% Similarity=0.253 Sum_probs=237.2
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCC-CCC-CCCCcccceEEEEecCCCCCcceeEEeEEEeeccCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPD-QNI-DSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH 204 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd-~~~-~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ah 204 (1390)
...+.++++++|++|.++ .+.+.|++++++|+..+..+ .++ ..+|++ +|+|+|++||++.||++++|++|++.+.|
T Consensus 141 ~~~l~~va~tsl~sK~~~-~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~ 218 (536)
T TIGR02340 141 REALINVAKTSMSSKIIG-LDSDFFSNIVVDAVLAVKMTNENGETKYPIK-AVNILKAHGGSARESYLVKGYALNCTRAS 218 (536)
T ss_pred HHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHHHhcccccCccccchH-HeEEEEecCCCccccEEEEEEEEecccCC
Confidence 466899999999999987 78999999999999998532 122 257885 69999999999999999999999999999
Q ss_pred CCCcceecCCcEEEEEeeeecccccc-------cccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHH
Q psy18037 205 KSMLTALNNPKILILQCAIVYQRVEG-------KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQ 277 (1390)
Q Consensus 205 k~M~~~i~nprIlLL~~~Ley~r~e~-------k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~ 277 (1390)
.+||+.++||||+|++|+|++.+.+. ....++.+.++|++++.++|++|++.|++||+++++|++.|++||.+
T Consensus 219 ~~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k 298 (536)
T TIGR02340 219 QQMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVE 298 (536)
T ss_pred CCCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHH
Confidence 99999999999999999999997664 23568899999999999999999999999999999999999999999
Q ss_pred cCCEEEEccChhHHHHHHHHhCCeEeeeccc-----ccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEec
Q psy18037 278 LGITLVLNVKTTVLERIARCTRADLVYSVDV-----LLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRG 352 (1390)
Q Consensus 278 ~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~-----~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG 352 (1390)
+||++++++++.+|+|||++|||.++++++. .++...||+|+.|+++++ +.++|++|+||. ...+|||+|||
T Consensus 299 ~~I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~i--g~~~~~~i~~~~-~~~~~TIlirG 375 (536)
T TIGR02340 299 AGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERI--ADDECILIKGTK-GRKSASIILRG 375 (536)
T ss_pred CCcEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEE--CCeEEEEEEcCC-CCCEEEEEEeC
Confidence 9999999999999999999999999999862 234456999999999999 999999999998 46799999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 353 ASRKELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 353 ~s~~~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+|+.+++|+||.++||++++++ .+++++..+++++..+.++++
T Consensus 376 ~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~ 431 (536)
T TIGR02340 376 ANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ 431 (536)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhH
Confidence 9999999999999999999998 689999999988766555444
No 24
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-32 Score=338.82 Aligned_cols=257 Identities=20% Similarity=0.265 Sum_probs=233.4
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
.++|.++++++|++|..+ .|.+.|+.++++|+..+.. ..|++ .|+|.|++||++.||++++|+|+++.+.| .
T Consensus 147 ~~~L~~ia~t~l~ski~~-~~~~~~s~l~~~av~~i~~-----~~~~~-~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~ 218 (519)
T TIGR02341 147 RDDLLNIARTTLSSKILS-QHKDHFAQLAVDAVLRLKG-----SGNLD-AIQIIKKLGGSLNDSYLDEGFLLEKKIGV-N 218 (519)
T ss_pred HHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHhcc-----CCChh-heEEEEccCCCcccceEEeeEEEeccCCC-C
Confidence 367889999999998665 8999999999999999853 12554 49999999999999999999999999877 6
Q ss_pred CcceecCCcEEEEEeeeecccccc--------cccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHc
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEG--------KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQL 278 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~--------k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~ 278 (1390)
||+.++||||+++++|||+.+++. +...+..+...|+++++++++.|++.|+|+|+++++|++.|++||.++
T Consensus 219 ~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~ 298 (519)
T TIGR02341 219 QPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA 298 (519)
T ss_pred CceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC
Confidence 899999999999999999988664 123477888999999999999999999999999999999999999999
Q ss_pred CCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHH
Q psy18037 279 GITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKEL 358 (1390)
Q Consensus 279 GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L 358 (1390)
||+++++++..+|+|||++|||.++++++ .+++.+||+|+.|+++.+ |.+.|++|+||+ ....|||+|||+|+.+|
T Consensus 299 ~I~~v~~~~~~~l~~ia~~tGa~ii~~~~-~~~~~~lG~~~~v~~~~i--g~~~~~~~~~~~-~~~~~TIllrG~t~~~l 374 (519)
T TIGR02341 299 GVMAIEHADFEGIERLALVTGGEIVSTFD-HPELVKLGSCDLIEEIMI--GEDKLLKFSGVK-LGEACTIVLRGATQQIL 374 (519)
T ss_pred CcEEEecCCHHHHHHHHHHhCCEEecccc-cCCccccccCceEEEEEE--CCEEEEEEEcCC-CCCEEEEEEeCCCHHHH
Confidence 99999999999999999999999999999 788889999999999998 899999999999 57799999999999999
Q ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 359 MKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 359 ~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+|+||.++||++++++ .+++++..+++++..+.|+++
T Consensus 375 ~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~ 424 (519)
T TIGR02341 375 DESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEA 424 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHH
Confidence 9999999999999998 688999999988776555544
No 25
>KOG0358|consensus
Probab=100.00 E-value=4.5e-33 Score=309.78 Aligned_cols=265 Identities=19% Similarity=0.299 Sum_probs=243.2
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
++.|.+.+.|+|.+|.++ +++..|++++++|+..|....+..+.|+++ |||.|..||.+.|+++|+|+||++......
T Consensus 154 re~Li~~atTsLnSKvvS-q~s~llapmAVdAV~kv~dp~~~~nvdlkd-IkivkklGgtvdDte~i~glvl~~~~~~~~ 231 (534)
T KOG0358|consen 154 RESLIKSATTSLNSKVVS-QYSSLLAPMAVDAVLKVIDPENATNVDLKD-IKIVKKLGGTVDDTELIKGLVLTQKASKSA 231 (534)
T ss_pred HHHHHHHHHhHhhHHHHH-hhccccchHHHHHHHhccCcccccccchhh-hhhHHhhCCccchhhhhcceEEeeecccCC
Confidence 667889999999999998 899999999999999876333356788875 999999999999999999999999998878
Q ss_pred CcceecCCcEEEEEeeeecccccc-------cccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc-----cHHHHHH
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEG-------KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNV-----ARLAQES 274 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~-------k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~V-----s~~A~~~ 274 (1390)
-|++++++||.|++|-|..++++. .+..++.+++.|+.||.+++++|.+.|+||+|+||+| +++|+||
T Consensus 232 gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHf 311 (534)
T KOG0358|consen 232 GPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHF 311 (534)
T ss_pred CcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHH
Confidence 999999999999999999998763 3567999999999999999999999999999999987 8999999
Q ss_pred HHHcCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCC
Q psy18037 275 LQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGAS 354 (1390)
Q Consensus 275 L~~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s 354 (1390)
|.+.+|+|+..|.+.++|.|++.+|+..+.++| ++++.+||+++.+++..-. |..+++.+.|+.++..+|||++||++
T Consensus 312 L~klkimvikdieRediefick~l~c~Pia~id-~f~~d~Lg~adlveE~~~~-G~gkivk~tg~~n~g~tvsil~RGsn 389 (534)
T KOG0358|consen 312 LAKLKIMVIKDIEREDIEFICKTLGCKPIADID-HFTADKLGSADLVEETDSS-GEGKIVKITGIQNAGRTVSILLRGSN 389 (534)
T ss_pred HHhCcEEEEccccHhhHHHHHhhcCCeecchhh-hcChhhcCcchhhhhcccC-CCccEEEEEEeecCCCceEEEEecCc
Confidence 999999999999999999999999999999999 9999999999999987442 66699999999988899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 355 RKELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 355 ~~~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
.-+|+|.+|++|||+||++. -|+|++..+.++|..+.|.+.
T Consensus 390 ~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~ 443 (534)
T KOG0358|consen 390 KLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEA 443 (534)
T ss_pred hhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchh
Confidence 99999999999999999998 499999999999998777654
No 26
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.98 E-value=1.5e-31 Score=327.46 Aligned_cols=239 Identities=17% Similarity=0.230 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
.+.+.+++++++.+|.++ .|.+.|++++++|+..+.++ ++.+|++ .|+|++++||++.||++++|++|++.+.|+.
T Consensus 141 ~~~l~~va~ts~~sk~~~-~~~~~l~~l~~~A~~~v~~~--~~~~~~~-~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~ 216 (484)
T cd03342 141 RELLLSVARTSLRTKLHA-DLADQLTEIVVDAVLAIYKP--DEPIDLH-MVEIMQMQHKSDSDTKLIRGLVLDHGARHPD 216 (484)
T ss_pred HHHHHHHHHHHhCcccch-hHHHHHHHHHHHHHHHHhhc--CCccChh-HeEEEEecCCChhhceEEeeEEEecCCCCCC
Confidence 456888999999999886 89999999999999999764 3478885 5999999999999999999999999999999
Q ss_pred CcceecCCcEEEEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEcc
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNV 286 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nV 286 (1390)
||+++.||||+|++|||++.+.+.+.. +. .+||+++++|++.|+++|.++||++++++
T Consensus 217 m~~~~~n~~Ill~~~~le~~~~~~~~~-~~---------------------~~lvi~~~~I~~~al~~l~~~~I~av~~~ 274 (484)
T cd03342 217 MPKRVENAYILTCNVSLEYEKTEVNSG-FF---------------------YSVVINQKGIDPPSLDMLAKEGILALRRA 274 (484)
T ss_pred CCccccCceEEEEeCCCCCCccccCcE-EE---------------------EEEEEeCCCccHHHHHHHHHCCCeEEEeC
Confidence 999999999999999999998765421 11 12999999999999999999999999999
Q ss_pred ChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q psy18037 287 KTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTS 366 (1390)
Q Consensus 287 K~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L~evKr~l~ 366 (1390)
++.+|+|||++|||.++++++ .+++..||+|+.|+++.+ +.++|++|+||+ ....|||+|||+|..+|+|+||+++
T Consensus 275 ~~~~l~~ia~~tGa~ii~~l~-~~~~~~LG~~~~v~~~~i--g~~~~~~i~~~~-~~~~~tI~lrg~t~~~l~E~er~l~ 350 (484)
T cd03342 275 KRRNMERLTLACGGVAMNSVD-DLSPECLGYAGLVYERTL--GEEKYTFIEGVK-NPKSCTILIKGPNDHTITQIKDAIR 350 (484)
T ss_pred CHHHHHHHHHHhCCEEecccc-cCChhhCcccceEEEEEE--CCeEEEEEECCC-CCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 999999999999999999999 789899999999999999 999999999999 5689999999999999999999999
Q ss_pred HHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 367 FMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 367 dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
||++|+++ .+++++..+++++..+.|+++
T Consensus 351 DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~ 392 (484)
T cd03342 351 DGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAK 392 (484)
T ss_pred HHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH
Confidence 99999998 799999999998876666554
No 27
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.98 E-value=9.5e-31 Score=323.58 Aligned_cols=260 Identities=17% Similarity=0.256 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
...+.++++++|++|.++ . .+.|++++++|+..+.++. .+.+|++ .|+|+|++||+..||++++|++|++... .
T Consensus 148 ~~~l~~i~~tsl~sK~~~-~-~~~ls~l~~~Ai~~v~~~~-~~~~~~~-~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~ 221 (531)
T TIGR02346 148 KKELIKALKASISSKQYG-N-EDFLAQLVAKACSTVMPKN-PENFNVD-NIRVSKIMGGSISNSEVLKGMVFNREAE--G 221 (531)
T ss_pred HHHHHHHHHHHhccccCc-h-HHHHHHHHHHHHHHHhhcC-CCcCChh-HeeEEEecCCChhhceeEeeeEEeccCC--C
Confidence 356888999999999997 4 9999999999999987642 2367885 4999999999999999999999999954 5
Q ss_pred CcceecCCcEEEEEeeeeccccccc----cc---chHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcC
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEGK----LL---SLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLG 279 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~k----~~---sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~G 279 (1390)
||+.++||||+|+++|+++.+.+.+ +. .+..+...|+++++.++++|++.|++||+++++|++.|++||.++|
T Consensus 222 ~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~ 301 (531)
T TIGR02346 222 SVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYN 301 (531)
T ss_pred CceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCC
Confidence 8999999999999999999987732 33 3667788999999999999999999999999999999999999999
Q ss_pred CEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHHH
Q psy18037 280 ITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELM 359 (1390)
Q Consensus 280 I~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L~ 359 (1390)
|.++++++..+|+|||++|||.++++++ .++..+||+|+.|+++++ +++.|.+|++|.+....|||+|||+|+.+++
T Consensus 302 I~av~~~~~~~l~~Ia~~tGa~ii~~l~-~~~~~~LG~a~~v~~~~i--g~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~ 378 (531)
T TIGR02346 302 IMVLKIPSKFELRRLCKTVGATPLARLG-APQPEEIGYVDSVYVSEI--GGQKVTVFKQENGDSKISTIILRGSTKNLLD 378 (531)
T ss_pred cEEEecCCHHHHHHHHHHHCCEEecccc-cCCHhHccccceEEEEEE--CCEEEEEEEccCCCCCeEEEEEECCCHHHHH
Confidence 9999999999999999999999999999 788889999999999999 8899999999973357899999999999999
Q ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 360 KVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 360 evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
|+||.++||++++++ .+++++..+++++..+.|+++
T Consensus 379 E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~ 427 (531)
T TIGR02346 379 DIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQ 427 (531)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH
Confidence 999999999999998 689999999988766555443
No 28
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.98 E-value=3.8e-32 Score=337.86 Aligned_cols=151 Identities=30% Similarity=0.445 Sum_probs=134.1
Q ss_pred cceEEEEccHHHHHHHHHhhCCCChhHHHhhhhhhhhhcccCCCCCCcccccCchHHHHhhhcccccChHHHHHHhhhcc
Q psy18037 1182 ANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEKGEESFIRSLSRCI 1261 (1390)
Q Consensus 1182 ~~~~~~~y~~~~F~~lR~~~~~~~~~~~~~Sl~r~~~~~~~~gksgs~f~~t~d~~~~~~e~~~~~~~~~~fi~SL~~~~ 1261 (1390)
..|.||+|+|.+|++||+++|+ ++++|+.|||.+.
T Consensus 402 ~~fkfkdY~P~vFr~LR~~fgI---------------------------------------------d~~dyl~Sl~~~~ 436 (765)
T PLN03185 402 EDFKWKDYCPMVFRNLREMFKI---------------------------------------------DAADYMMSICGND 436 (765)
T ss_pred CceEEEEECHHHHHHHHHHhCC---------------------------------------------CHHHHHHhccCCc
Confidence 4699999999999999999998 6788999998653
Q ss_pred --cccccCCCCCCceeeecCCceEEeccCHHHHHHHHHhhHHHHHHHhhhccCCCCceeeeeeeeEEEEEccCCCCceEE
Q psy18037 1262 --RWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNCFENSSPTLLCKIFGVFRVICQNNNSKTRSN 1339 (1390)
Q Consensus 1262 --~~~~~gGKSgs~F~~T~D~rfiiKtis~~E~~~fl~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~i~~~~~~~~~k~~ 1339 (1390)
.+..++|||||+||+|.|+|||||||++.|++.|++|||+||+||.. ||+|||+||||+|+|++.+ +.+++
T Consensus 437 ~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~~~l~~iLp~Y~~hv~~----n~~TLL~kf~Gl~~i~~~~---g~k~~ 509 (765)
T PLN03185 437 ALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPDYHHHVKT----YENTLITKFFGLHRIKPSS---GQKFR 509 (765)
T ss_pred cchhccCCCCcCCeEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHhh----CCCcchhhheEEEEEEeCC---CcEEE
Confidence 45689999999999999999999999999999999999999999987 8999999999999998764 45899
Q ss_pred EEEEeccCCCC-CceeEEEecCcccCCccCCCCCCCCCCCccccCCcc
Q psy18037 1340 LLVMENLFHSR-NIKLRFDLKGSLRNRLVDTSLDSMDSDAVNFGQNEE 1386 (1390)
Q Consensus 1340 ~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~~~~~~~~vllD~n~~ 1386 (1390)
||||+|||+++ .|+++||||||+++|.+..... ..+.+|+|.||.
T Consensus 510 fvVM~NlF~~~~~I~~~yDLKGSt~~R~~~k~~~--~~~~tlKDlD~~ 555 (765)
T PLN03185 510 FVVMGNMFCTELRIHRRFDLKGSSLGRSADKVEI--DENTTLKDLDLN 555 (765)
T ss_pred EEEEecCCCCCCccceEEECCCCCCCCCCccccc--cCCCeeeecCcC
Confidence 99999999986 9999999999999999865322 236788777663
No 29
>KOG0229|consensus
Probab=99.97 E-value=2.3e-32 Score=314.00 Aligned_cols=154 Identities=31% Similarity=0.466 Sum_probs=137.0
Q ss_pred CcceEEEEccHHHHHHHHHhhCCCChhHHHhhhhhhhhhcccCCCCCCcccccCchHHHHhhhcccccChHHHHHHhhhc
Q psy18037 1181 AANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEKGEESFIRSLSRC 1260 (1390)
Q Consensus 1181 ~~~~~~~~y~~~~F~~lR~~~~~~~~~~~~~Sl~r~~~~~~~~gksgs~f~~t~d~~~~~~e~~~~~~~~~~fi~SL~~~ 1260 (1390)
...|.+|+|||.+|+.||++||+ +..+|+.|||+.
T Consensus 95 ~~~Fk~KdYcP~vFR~lRelFgI---------------------------------------------d~~DYl~Slc~~ 129 (420)
T KOG0229|consen 95 SSDFKFKDYCPMVFRNLRELFGI---------------------------------------------DPADYLLSLCGN 129 (420)
T ss_pred ccccchhhcChHHHHHHHHHhCC---------------------------------------------ChHHHHHHHhcc
Confidence 35689999999999999999998 577899999987
Q ss_pred cccc--ccCCCCCCceeeecCCceEEeccCHHHHHHHHHhhHHHHHHHhhhccCCCCceeeeeeeeEEEEEccCCCCceE
Q psy18037 1261 IRWE--ARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNCFENSSPTLLCKIFGVFRVICQNNNSKTRS 1338 (1390)
Q Consensus 1261 ~~~~--~~gGKSgs~F~~T~D~rfiiKtis~~E~~~fl~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~i~~~~~~~~~k~ 1338 (1390)
.... .++|||||+||.|.|+|||||||.++|++.++++||.||+|+.+ +++.|||+||||+|+|+..+ +.++
T Consensus 130 ~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy~~v~~---~~~~TLl~kf~Gly~vk~~g---g~k~ 203 (420)
T KOG0229|consen 130 PPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYYQHVVE---QNNRTLLPKFFGLYRVKPDG---GKKI 203 (420)
T ss_pred hhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHc---cCCceeehhhceeEEEeeCC---CceE
Confidence 6554 77799999999999999999999999999999999999999998 36669999999999999975 3599
Q ss_pred EEEEEeccCCCC-CceeEEEecCcccCCccCCCCCCCCCCCccccCCcc
Q psy18037 1339 NLLVMENLFHSR-NIKLRFDLKGSLRNRLVDTSLDSMDSDAVNFGQNEE 1386 (1390)
Q Consensus 1339 ~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~~~~~~~~vllD~n~~ 1386 (1390)
|||||+|||... .|+++||||||+++|.++.+ ++.....+|+|.+|.
T Consensus 204 yfvVM~Nlf~~~~~iH~kyDLKGSt~~R~askk-e~~k~~pTlKDlDf~ 251 (420)
T KOG0229|consen 204 YFVVMNNLFPSRLKVHRKYDLKGSTVGREASKK-EKIKELPTLKDLDFL 251 (420)
T ss_pred EEEEecccCCCccceeEEeecCCCcccccccch-hhccCCCccccchhh
Confidence 999999999998 99999999999999999873 444457788877765
No 30
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.97 E-value=2.8e-30 Score=316.89 Aligned_cols=254 Identities=30% Similarity=0.466 Sum_probs=234.6
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCCC
Q psy18037 128 SHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSM 207 (1390)
Q Consensus 128 ~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~M 207 (1390)
+++.++++++|.++... .|.+.|++++++|+..+.. .+|+.+ ++|.++.||++.||++++|++|++.+.+.+|
T Consensus 117 ~~l~~i~~t~l~~k~~~-~~~~~l~~li~~a~~~~~~-----~~~~~~-i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~ 189 (485)
T PF00118_consen 117 ESLLNIAKTSLNSKISS-SWSDHLSKLIVDAIKSIKS-----NFDLDN-IKIIKIPGGSISDSELINGIVLDKGFSSPNM 189 (485)
T ss_dssp HHHHHHHHHHHTTSCGG-GCHHHHHHHHHHHHHHHTT-----THHGGG-EEEEEEESSSSGGEEEESEEEESSSBSSTTS
T ss_pred hhhhhhhcccccccccc-cchhhhhhhHHHHHHhhcc-----cccccc-hhhhhhccccccccccccceeeecccccccc
Confidence 78999999999999765 9999999999999955542 267755 9999999999999999999999999999999
Q ss_pred cceecCCcEEEEEeeeecccccc-------cccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCC
Q psy18037 208 LTALNNPKILILQCAIVYQRVEG-------KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGI 280 (1390)
Q Consensus 208 ~~~i~nprIlLL~~~Ley~r~e~-------k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI 280 (1390)
|++++||||++++++|++.+. . ....++.+.++|+++++.++++|.+.|++|||++++|++.|+++|.++||
T Consensus 190 ~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I 268 (485)
T PF00118_consen 190 PKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI 268 (485)
T ss_dssp BSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH
T ss_pred ccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhh
Confidence 999999999999999999987 3 24568899999999999999999999999999999999999999999999
Q ss_pred EEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEe--cCCCCCCeEEEEEecCCHHHH
Q psy18037 281 TLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFE--GCAFPHKGSTVILRGASRKEL 358 (1390)
Q Consensus 281 ~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fe--gc~~~~~g~TIlLRG~s~~~L 358 (1390)
.++.+|+..+|+|||++|||.++++++ .+.+..+|+|+.+++..+ +++.|++|+ +|. ....|||+|||++..++
T Consensus 269 ~~i~~v~~~~l~~i~~~tg~~ii~~~~-~l~~~~lG~~~~v~~~~i--~~~~~~~~~~~~~~-~~~~~Till~g~t~~~l 344 (485)
T PF00118_consen 269 LVIRRVSKEDLERIARATGASIISSLD-DLSDEDLGFCKSVEEREI--GNKKYIFIEGIGCL-SSKICTILLRGPTEFEL 344 (485)
T ss_dssp EEESSEHHHHHHHHHHHHTSBEBSSCG-GSTGGGSEEEEEEEEEEE--TSSEEEEEEEHSES-SSSEEEEEEEESSHHHH
T ss_pred hccccchHHHHHhhhcccCCcEecccc-cccchhhhhhhhhhhccc--cccccccccccccc-ccCceEEEeccccchhH
Confidence 999999999999999999999999998 788888999999999999 999999999 688 67899999999999999
Q ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCC
Q psy18037 359 MKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTK 393 (1390)
Q Consensus 359 ~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~ 393 (1390)
+++||.+++|++++++ .|+.++.++.+++...++.
T Consensus 345 ~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 392 (485)
T PF00118_consen 345 EERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGK 392 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSH
T ss_pred HHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCc
Confidence 9999999999999998 7999999998888764443
No 31
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.97 E-value=3.8e-30 Score=314.41 Aligned_cols=226 Identities=28% Similarity=0.390 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
.+.+.++++++|.+|.++ .|.+.|++++++|+..+.++.. .+|. ++|+|++++||++.||++++|++|++++.|+.
T Consensus 136 ~~~l~~ia~tsl~sK~~~-~~~~~l~~l~~~Ai~~v~~~~~--~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~ 211 (464)
T cd00309 136 REELLKVATTSLNSKLVS-GGDDFLGELVVDAVLKVGKENG--DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPY 211 (464)
T ss_pred HHHHHHHhHhcccccccc-cchHHHHHHHHHHHHHhccccC--cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCC
Confidence 457889999999999987 9999999999999999986532 3454 57999999999999999999999999999999
Q ss_pred CcceecCCcEEEEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEcc
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNV 286 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nV 286 (1390)
|++.++||||+|++|+|++ ||+++++|++.|+++|.++||++++++
T Consensus 212 m~~~~~n~~Ili~~~~Le~----------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~ 257 (464)
T cd00309 212 MPKRLENAKILLLDCKLEY----------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRV 257 (464)
T ss_pred CceeecCceEEEEecCcce----------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeC
Confidence 9999999999999999999 999999999999999999999999999
Q ss_pred ChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q psy18037 287 KTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTS 366 (1390)
Q Consensus 287 K~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L~evKr~l~ 366 (1390)
++.+|+|||++|||+++++++ .++...+|+|+.|++.++ ++++|++|+||. ...+|||+|||++..+|+|+||+++
T Consensus 258 ~~~~L~~Ia~~tGa~ii~~~~-~~~~~~lG~~~~v~~~~~--g~~~~~~~~~~~-~~~~~TIllrG~t~~~l~e~~r~i~ 333 (464)
T cd00309 258 RKEDLERIAKATGATIVSRLE-DLTPEDLGTAGLVEETKI--GDEKYTFIEGCK-GGKVATILLRGATEVELDEAERSLH 333 (464)
T ss_pred CHHHHHHHHHHhCCEEecccc-cCCcccCccccEEEEEEE--cCeeEEEEEecC-CCCEEEEEEeCCcHHHHHHHHHHHH
Confidence 999999999999999999999 788899999999999999 999999999998 5789999999999999999999999
Q ss_pred HHHHHHHH-------------HHHHHHHHHHHhhhhccCCC
Q psy18037 367 FMIYVLYN-------------WKLESSLLMDEQAYVIQTKK 394 (1390)
Q Consensus 367 dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~ 394 (1390)
||++++++ .|++++..+.+++...++.+
T Consensus 334 dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~ 374 (464)
T cd00309 334 DALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKE 374 (464)
T ss_pred HHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHH
Confidence 99999998 68889999988876544443
No 32
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=3.9e-29 Score=305.54 Aligned_cols=228 Identities=19% Similarity=0.305 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC
Q psy18037 127 ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206 (1390)
Q Consensus 127 ~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~ 206 (1390)
.+++..+++++|.++... |.+.|++++++|+..+.++. .+.+|++ .|+|+|++||++.||++++|++|++++. .
T Consensus 138 ~~~l~~i~~t~l~sk~~~--~~~~l~~l~~~a~~~~~~~~-~~~~~~~-~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~ 211 (472)
T cd03341 138 KEEVSKALKTAIASKQYG--NEDFLSPLVAEACISVLPEN-IGNFNVD-NIRVVKILGGSLEDSKVVRGMVFKREPE--G 211 (472)
T ss_pred HHHHHHHHHHHhcccccc--hHHHHHHHHHHHHHHHhhcc-CCcCChh-HeEEEEecCCCcccceEEeeEEEccccC--C
Confidence 346788999999999975 89999999999999997652 2468885 5999999999999999999999988765 4
Q ss_pred CcceecCCcEEEEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEcc
Q psy18037 207 MLTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNV 286 (1390)
Q Consensus 207 M~~~i~nprIlLL~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nV 286 (1390)
|++.++||||+|++++|++ |++||+++++|++.|++||.++||++++++
T Consensus 212 ~~~~~~n~~Ili~~~~Le~-------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~ 260 (472)
T cd03341 212 SVKRVKKAKVAVFSCPFDI-------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKIN 260 (472)
T ss_pred CceeccCCcEEEEeccccC-------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeC
Confidence 5689999999999999998 999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q psy18037 287 KTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTS 366 (1390)
Q Consensus 287 K~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L~evKr~l~ 366 (1390)
++.+|+|||++|||+++++++ .++...||+|+.|+++++ |+++|++|+||.+...+|||+|||+++.+++|+||.++
T Consensus 261 ~~~~Le~Ia~~tGa~ii~~~~-~l~~~~lG~~~~v~~~~i--g~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~ 337 (472)
T cd03341 261 SKFELRRLCRTVGATPLPRLG-APTPEEIGYCDSVYVEEI--GDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAID 337 (472)
T ss_pred CHHHHHHHHHHhCCEEecccc-cCCHhHCCCceEEEEEEE--CCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHH
Confidence 999999999999999999999 788899999999999999 89999999999832679999999999999999999999
Q ss_pred HHHHHHHH-------------HHHHHHHHHHHhhhhccCCC
Q psy18037 367 FMIYVLYN-------------WKLESSLLMDEQAYVIQTKK 394 (1390)
Q Consensus 367 dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~ 394 (1390)
||++++++ .+++++..+.+++....+++
T Consensus 338 DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~ 378 (472)
T cd03341 338 DGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLE 378 (472)
T ss_pred HHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHH
Confidence 99999998 68899999988876544443
No 33
>KOG0363|consensus
Probab=99.96 E-value=2.2e-29 Score=279.27 Aligned_cols=259 Identities=22% Similarity=0.287 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCC
Q psy18037 125 KFESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH 204 (1390)
Q Consensus 125 ~~~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ah 204 (1390)
.|++-|.++++|.|.||.++ .-.++|++++++|+..++-. -|+. .|+|.|+.||++.||.+-.|++++|.+-.
T Consensus 149 kfr~DLl~iarTTL~SKiLs-q~kehFaelavdAV~rLkGs-----~nL~-~IqIIK~~Gg~l~dSfLDeGFlL~K~igv 221 (527)
T KOG0363|consen 149 KFREDLLKIARTTLSSKILS-QDKEHFAELAVDAVLRLKGS-----TNLE-AIQIIKKLGGKLEDSFLDEGFLLDKKIGV 221 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhcCC-----CCcc-ceeeehhcCCccccccccccceeccccCC
Confidence 34778999999999999998 88999999999999988632 2443 49999999999999999999999998764
Q ss_pred CCCcceecCCcEEEEEeeeecccccc-----cc---cchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHH
Q psy18037 205 KSMLTALNNPKILILQCAIVYQRVEG-----KL---LSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQ 276 (1390)
Q Consensus 205 k~M~~~i~nprIlLL~~~Ley~r~e~-----k~---~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~ 276 (1390)
+-|++++|||||+-+.+++..+.+- ++ ..+..+-..|++-++++|+||...|+|+.+...-|-++-.++|.
T Consensus 222 -~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~ 300 (527)
T KOG0363|consen 222 -NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFA 300 (527)
T ss_pred -CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHh
Confidence 6799999999999999999988763 23 34667777899999999999999999999999999999999999
Q ss_pred HcCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCCHH
Q psy18037 277 QLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRK 356 (1390)
Q Consensus 277 ~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~ 356 (1390)
.+||+.+.+....-+||++-+||+.|++++| .....++|+|+.++..-+ |.++++.|.||. ....|||+|||++.+
T Consensus 301 dagi~aIEHADFdGiERLalvtGGeI~STFd-~p~~~klG~C~~Ieeimi--Ged~li~FSGv~-~GeActIVlrGat~q 376 (527)
T KOG0363|consen 301 DAGIMAIEHADFDGIERLALVTGGEIVSTFD-NPELVKLGECDLIEEIMI--GEDKLIKFSGVK-LGEACTIVLRGATQQ 376 (527)
T ss_pred hcCcceeecccchhHHHHhhcccceeeeccC-CcchhccccchhhHHHhc--Cccceeeecccc-cccceEEEEecccHH
Confidence 9999999999999999999999999999999 788899999999999998 999999999999 566899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 357 ELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 357 ~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
+|+|.+|++|||++|+-. .|+-++..++++|+..+|++.
T Consensus 377 ~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea 428 (527)
T KOG0363|consen 377 ILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEA 428 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhh
Confidence 999999999999999875 688999999999999888875
No 34
>KOG0359|consensus
Probab=99.96 E-value=6.6e-30 Score=289.44 Aligned_cols=262 Identities=19% Similarity=0.288 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCC
Q psy18037 126 FESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHK 205 (1390)
Q Consensus 126 ~~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk 205 (1390)
-++.|..+.+++|.+|... +-.+.+++++++|+..+.+. ...+|+ ++|+|.+...++..||.+|+|+|++.+..|.
T Consensus 141 ~~~~L~~va~tsl~Tkv~~-~la~~lt~~vv~aVl~i~~~--~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHp 216 (520)
T KOG0359|consen 141 DRETLKDVARTSLRTKVHA-ELADVLTPIVVDSVLCIRRQ--EEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHP 216 (520)
T ss_pred hHHHHHHHHHHhhcCcccH-HHHhHhHHHHHhhheeeccC--CCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCc
Confidence 4678899999999999875 89999999999999998832 467898 4799999999999999999999999999999
Q ss_pred CCcceecCCcEEEEEeeeeccccccc-------ccchHHHHHHHHHHHHHHHHHHHhcCCC----EEEecCCccHHHHHH
Q psy18037 206 SMLTALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEYLRNVVARISALKPD----IVLVQRNVARLAQES 274 (1390)
Q Consensus 206 ~M~~~i~nprIlLL~~~Ley~r~e~k-------~~sle~ii~qE~eyL~~~V~rI~~~~pn----VVlv~k~Vs~~A~~~ 274 (1390)
.||++++|+-|++++.+|||.|+|-+ -..-+.+...|++|+...+.+|+.++-. ||+.||||++..++.
T Consensus 217 dmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~ 296 (520)
T KOG0359|consen 217 DMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDS 296 (520)
T ss_pred ccccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchh
Confidence 99999999999999999999999853 2347789999999999999999998754 789999999999999
Q ss_pred HHHcCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEEEecCC
Q psy18037 275 LQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGAS 354 (1390)
Q Consensus 275 L~~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIlLRG~s 354 (1390)
|++.||++.+|.|+..|||+..+||+..++|+| ++++..||+|+.+++.++ |.++|+|+|+|++ +..||||++|+|
T Consensus 297 ~a~~gIlaLRRAKRRNmERL~lacGG~a~nsvd-dLtp~~LG~aglVye~tl--GEEkfTFIE~~~~-p~S~TiLikgpn 372 (520)
T KOG0359|consen 297 LAKSGILALRRAKRRNMERLVLACGGEAVNSVD-DLTPDYLGYAGLVYEYTL--GEEKFTFIEKCNN-PSSVTILIKGPN 372 (520)
T ss_pred hhhcchHHHHHHhhhhHHHHHHhhccceecccc-cCChhhccccceeEEeec--cceeeEeeecCCC-CcceEEEEeCCc
Confidence 999999999999999999999999999999999 899999999999999999 9999999999995 679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 355 RKELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 355 ~~~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
.+.+.++|.+++|++.+++| .+.+....+++....++|+..
T Consensus 373 kht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~ 426 (520)
T KOG0359|consen 373 KHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAY 426 (520)
T ss_pred cchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhh
Confidence 99999999999999999998 577777777766666777655
No 35
>KOG0360|consensus
Probab=99.96 E-value=5.2e-29 Score=285.05 Aligned_cols=266 Identities=19% Similarity=0.258 Sum_probs=238.0
Q ss_pred HHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCC-CCCCCC-CCcccceEEEEecCCCCCcceeEEeEEEeec
Q psy18037 124 DKFESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKP-DQNIDS-FDIRQYVQIKKVDGGTRNDSFVVSGIVHSKN 201 (1390)
Q Consensus 124 ~~~~~hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~p-d~~~~~-~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn 201 (1390)
....+-|.+++++.|++|.+. .-.+++++++++|+..++- +.++.. ..+ +-|.|-|-+|++..||.++.|..++..
T Consensus 145 ~lg~~~Lin~~ktsmsSK~i~-~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi-~~vnILkahG~s~~eS~l~~GyaLnc~ 222 (545)
T KOG0360|consen 145 SLGTQILINLAKTSMSSKIIG-MDSDFFTEMVVDALLAVKILDINGEPHYPI-NSVNILKAHGKSQIESMLLPGYALNCS 222 (545)
T ss_pred hcchHHHHHHHHhhhcceecc-cchHHHHHHHHHHHHHHhhcccCCceeccc-cceeEEecCCccchhheeecceeeecc
Confidence 345778999999999999997 7899999999999987752 223333 344 359999999999999999999999999
Q ss_pred cCCCCCcceecCCcEEEEEeeeecccccc-------cccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHH
Q psy18037 202 VSHKSMLTALNNPKILILQCAIVYQRVEG-------KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQES 274 (1390)
Q Consensus 202 ~ahk~M~~~i~nprIlLL~~~Ley~r~e~-------k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~ 274 (1390)
++...||.+|+|+||++|+|.|.-.+.+. ....++.+.+.|.+..++-+++|++.|+||||++|+|++++++|
T Consensus 223 ~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~ 302 (545)
T KOG0360|consen 223 VASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKY 302 (545)
T ss_pred HhhhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHH
Confidence 99999999999999999999998776653 24568889999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEccChhHHHHHHHHhCCeEeeeccc-----ccCCccccccceEEEEEEecCCcEEEEEecCCCCCCeEEEE
Q psy18037 275 LQQLGITLVLNVKTTVLERIARCTRADLVYSVDV-----LLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVI 349 (1390)
Q Consensus 275 L~~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~-----~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~g~TIl 349 (1390)
|.++|+++|+|++..+|++||++|||.+++|+.. .+.+..+|.|+.|.+.+| +++.++.+.|.+ .. .|+|+
T Consensus 303 ~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri--~dde~ilikg~k-a~-~aSiI 378 (545)
T KOG0360|consen 303 FVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERI--GDDELILIKGTK-AT-SASII 378 (545)
T ss_pred HHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhc--ccceeEEeccCc-cc-eeeEE
Confidence 9999999999999999999999999999999972 234678999999999999 999999999998 55 99999
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 350 LRGASRKELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 350 LRG~s~~~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
|||+|...++|++|.+|++++|++. +|-.++.+++.||..+..+++
T Consensus 379 LrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~ 437 (545)
T KOG0360|consen 379 LRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQ 437 (545)
T ss_pred EecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHH
Confidence 9999999999999999999999997 788999999999988666655
No 36
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.3e-27 Score=288.53 Aligned_cols=251 Identities=26% Similarity=0.270 Sum_probs=228.3
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEee-ccCCCCCc-c
Q psy18037 132 KLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSK-NVSHKSML-T 209 (1390)
Q Consensus 132 ~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~K-n~ahk~M~-~ 209 (1390)
++..+.+.++... .+ +.|.+++++|+..|.... . |++ .|.+.+..||...|+++|.|++|+| .+.|..|| +
T Consensus 142 ~~~~t~v~sk~~~-~~-~~i~~lv~~Av~~v~~~~---~-d~~-~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~ 214 (524)
T COG0459 142 KIAITSVASKSAN-SD-EEIGELVVEAVEKVGKEQ---S-DLD-GIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDK 214 (524)
T ss_pred hhhhheeeeeecc-Ch-HHHHHHHHHHHHHhcccc---c-ccC-CeEEEEecCCCccceEEEeeEEecCCccCCCCCCcc
Confidence 4588888888886 56 999999999999997532 2 654 5999999999999999999999999 89999999 8
Q ss_pred eecCCcEEEEEeeeeccccccc-------ccchHHHHHHHH-HHHHHHHHHHHhcCCC-EEEecCCccHHHHHHHHHcCC
Q psy18037 210 ALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQET-EYLRNVVARISALKPD-IVLVQRNVARLAQESLQQLGI 280 (1390)
Q Consensus 210 ~i~nprIlLL~~~Ley~r~e~k-------~~sle~ii~qE~-eyL~~~V~rI~~~~pn-VVlv~k~Vs~~A~~~L~~~GI 280 (1390)
.++||+|||++++|++.+++.. ...|..|.++|+ ++|..+|.+|++.|.| ||+++++|++++++||.+.||
T Consensus 215 ~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~I 294 (524)
T COG0459 215 RLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAI 294 (524)
T ss_pred ccccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcc
Confidence 9999999999999999988753 245888999999 9999999999999999 999999999999999999999
Q ss_pred EEEEccChhHH-HHHHHHhCCeEeeecccccCCccccc--cceEEEEEEecCCcEEEEEecCCC-CCCeEEEEEecCCHH
Q psy18037 281 TLVLNVKTTVL-ERIARCTRADLVYSVDVLLNQIHLGT--CSRFSVKKLSDSNKTLMFFEGCAF-PHKGSTVILRGASRK 356 (1390)
Q Consensus 281 ~vv~nVK~~~L-eRIAr~TgA~Ii~Sid~~l~~~~LG~--c~~f~v~~~~~~~kt~i~fegc~~-~~~g~TIlLRG~s~~ 356 (1390)
+++++|+.++| +||+++|||.+++.++ ++++..+|. |+.|+..++ ++..+.+|++|.+ ....|||+|||+++.
T Consensus 295 lt~~~v~~~dl~~~l~~~~ga~~v~~~~-d~t~~~~G~~~~~~ve~~~~--~~~~~~~~~~~~~~~~~~~tI~vrgate~ 371 (524)
T COG0459 295 LTGRRVKKEDLGERLAKLGGAKIVSVLK-DLTTIVLGEGAAGLVEETKT--GDYDMEKLQERKAKAGGVATILVRGATEV 371 (524)
T ss_pred eecceecchhhHHHHHHccCceEEeecc-cCceeecCccccceEEEeec--cchhhhhhhhhhhcCCCeEEEEECCccHh
Confidence 99999999999 8999999999999999 789999999 999999999 8999999999984 156899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccC
Q psy18037 357 ELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQT 392 (1390)
Q Consensus 357 ~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g 392 (1390)
+++|.||.++|||+++++ .+++++..+++++....|
T Consensus 372 ~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g 420 (524)
T COG0459 372 ELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEG 420 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCc
Confidence 999999999999999998 699999999998645444
No 37
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=99.94 E-value=6.1e-28 Score=271.83 Aligned_cols=124 Identities=34% Similarity=0.540 Sum_probs=88.4
Q ss_pred Hhhh--cccccccCCCCCCceeeecCCceEEeccCHHHHHHHHHhhHHHHHHHhhhccCCCCceeeeeeeeEEEEEccCC
Q psy18037 1256 SLSR--CIRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNCFENSSPTLLCKIFGVFRVICQNNN 1333 (1390)
Q Consensus 1256 SL~~--~~~~~~~gGKSgs~F~~T~D~rfiiKtis~~E~~~fl~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~i~~~~~~ 1333 (1390)
|||. +..|..++|||||+||+|.|+|||||||++.|++.|+++||+||+||.+ +|.|||+||||+|+|+..+.
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~----~~~SlL~r~~Gl~~i~~~~~- 76 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSE----NPNSLLPRFYGLYSIKKSNG- 76 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHH----TTTSSS--EEEEEEE-EETT-
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHh----CcCchHHHHHHHheecccCC-
Confidence 6764 4789999999999999999999999999999999999999999999998 89999999999999954432
Q ss_pred CCceEEEEEEeccCCC-CCceeEEEecCcccCCccCCCCCCCCCCCccccCCcc
Q psy18037 1334 SKTRSNLLVMENLFHS-RNIKLRFDLKGSLRNRLVDTSLDSMDSDAVNFGQNEE 1386 (1390)
Q Consensus 1334 ~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~~~~~~~~~vllD~n~~ 1386 (1390)
..++|||||+|||++ ..|+++||||||+++|.+.++ ++.+...||+|.||.
T Consensus 77 -~~~~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~~-~~~~~~~~lkD~df~ 128 (252)
T PF01504_consen 77 -KEKIYFVVMENLFYTPRNIHERYDLKGSTVGRKAKKK-DREQTEPVLKDLDFI 128 (252)
T ss_dssp --EEEEEEEEE-SS-SSS--SEEEEE--SSSSS-S-CH-HHCSSS-EEEHHHHH
T ss_pred -ceeEEEEEECCCccCCcccceEEecCCcccCCCCCcc-ccccccceeeccccc
Confidence 368999999999999 599999999999999999862 222347999999987
No 38
>KOG0362|consensus
Probab=99.91 E-value=7.6e-23 Score=236.46 Aligned_cols=252 Identities=18% Similarity=0.247 Sum_probs=224.5
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCCCccee
Q psy18037 132 KLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTAL 211 (1390)
Q Consensus 132 ~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~M~~~i 211 (1390)
..+++.++++... -.+++++++.+||..+.|. ..|++++ |+|.||.||...+|.++.|+||+..+. +-+++.
T Consensus 158 ~~~rs~i~skq~~--~ed~l~~lVa~ac~si~p~---~~Fnvdn-IrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~a 229 (537)
T KOG0362|consen 158 WALRSVIMSKQYG--NEDFLTKLVAKACVSILPL---MSFNVDN-IRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSA 229 (537)
T ss_pred HHHHHHHHHhhcc--hHHHHHHHHHHHHHhhccc---ccccccc-eEEEEEecCCcccceeeEEEEeccccC--Cccccc
Confidence 5566777777764 7899999999999999986 2388875 999999999999999999999998876 444788
Q ss_pred cCCcEEEEEeeeecccccccc-------cchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEE
Q psy18037 212 NNPKILILQCAIVYQRVEGKL-------LSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVL 284 (1390)
Q Consensus 212 ~nprIlLL~~~Ley~r~e~k~-------~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~ 284 (1390)
+.+||++.+||++..+++.+- ..+..+-.-|...++.+|+.|.+.|++||++.+.|++++++||.+.+|+|++
T Consensus 230 k~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlq 309 (537)
T KOG0362|consen 230 KDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQ 309 (537)
T ss_pred ccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEE
Confidence 899999999999999998762 2355666789999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEEEecCCcEEEEEec-CCCCCCeEEEEEecCCHHHHHHHHH
Q psy18037 285 NVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEG-CAFPHKGSTVILRGASRKELMKVKR 363 (1390)
Q Consensus 285 nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~feg-c~~~~~g~TIlLRG~s~~~L~evKr 363 (1390)
--.+-+|.|++|..||.+.+.+- ...++.+|+|+.++..++ |+.+++.|+. |. ..+..||+|||++...|+.++|
T Consensus 310 i~Sk~eLrrlcrtvGA~~l~rl~-~P~~~~lG~~d~V~~~Ei--G~~~v~vF~~e~~-~~~~~TvVLRgst~s~LDd~ER 385 (537)
T KOG0362|consen 310 INSKFDLRRLCRTVGATALPRLF-PPAPEELGYCDSVSTQEI--GDTLVVVFRWEST-GTRVATVVLRGATQSILDDAER 385 (537)
T ss_pred eccHhhHHHHHHHcCCccchhcc-CCCCccccccceeeeeec--CCceEEEEeeccC-CCceeEEEEcccchhhHHHHHH
Confidence 99999999999999999999998 677889999999999999 9999998874 44 5678999999999999999999
Q ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 364 VTSFMIYVLYN-------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 364 ~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
++.+++++++. .++|++..+-+++...+|.++
T Consensus 386 AVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q 430 (537)
T KOG0362|consen 386 AVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQ 430 (537)
T ss_pred HHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcch
Confidence 99999999996 699999999999888788665
No 39
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.89 E-value=3.7e-22 Score=247.10 Aligned_cols=215 Identities=18% Similarity=0.201 Sum_probs=182.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCc-ceeEEeEEEeeccCCCC-------CcceecCCcEE
Q psy18037 146 SWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRND-SFVVSGIVHSKNVSHKS-------MLTALNNPKIL 217 (1390)
Q Consensus 146 ~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~D-S~lI~GvV~~Kn~ahk~-------M~~~i~nprIl 217 (1390)
.+.+.+++++++|+..+.++ +. +.|+ .||...| +++++|++|++.+.|.. |++.++||+|+
T Consensus 152 ~~~~~l~~lv~~Av~~v~~~---g~------i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Il 220 (542)
T PRK12849 152 NGDEEIGELIAEAMEKVGKD---GV------ITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLIL 220 (542)
T ss_pred CChHHHHHHHHHHHHHhccC---Cc------EeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEE
Confidence 47899999999999988643 22 3343 6999887 79999999999999874 68999999999
Q ss_pred EEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHc------CCEEEEccC----
Q psy18037 218 ILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQL------GITLVLNVK---- 287 (1390)
Q Consensus 218 LL~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~------GI~vv~nVK---- 287 (1390)
++++.|. +. +.+..++++|.+.|++||+++++|++.|+++|.++ ||++|++++
T Consensus 221 i~d~~i~---------~~--------~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~ 283 (542)
T PRK12849 221 LTDKKIS---------SL--------QDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDR 283 (542)
T ss_pred eecCCcC---------CH--------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccch
Confidence 9999553 11 22445789999999999999999999999999999 999999888
Q ss_pred -hhHHHHHHHHhCCeEee-----ecccccCCccccccceEEEEEEecCCcEEEEEecCCCC-------------------
Q psy18037 288 -TTVLERIARCTRADLVY-----SVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFP------------------- 342 (1390)
Q Consensus 288 -~~~LeRIAr~TgA~Ii~-----Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~------------------- 342 (1390)
+.+|+|||++|||.+++ +++ .++..+||+|+.|++.. +++++|+||.++
T Consensus 284 r~~~l~~ia~~tGa~~v~~~~~~~~~-~~~~~~LG~~~~v~~~~-----~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~ 357 (542)
T PRK12849 284 RKAMLEDIAILTGGTVISEDLGLKLE-EVTLDDLGRAKRVTITK-----DNTTIVDGAGDKEAIEARVAQIRRQIEETTS 357 (542)
T ss_pred hHhHHHHHHHHhCCEEecccccCCcc-cCCHHHCceeeEEEEee-----eeEEEEeCCCCHHHHHHHHHHHHHHHHhcCc
Confidence 44599999999999999 588 78888999999999854 688999999853
Q ss_pred ---------------CCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 343 ---------------HKGSTVILRGASRKELMKVKRVTSFMIYVLYN------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 343 ---------------~~g~TIlLRG~s~~~L~evKr~l~dal~vv~n------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
...|||+|||+|+.+++|++|.++||++++++ .+++++..+++++ .++|+++
T Consensus 358 ~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~~ 436 (542)
T PRK12849 358 DYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQA 436 (542)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHHH
Confidence 14899999999999999999999999999998 6899999999887 6566554
No 40
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.89 E-value=6.9e-22 Score=243.95 Aligned_cols=225 Identities=17% Similarity=0.156 Sum_probs=188.7
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCc-ceeEEeEEEeeccCCCCC
Q psy18037 129 HRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRND-SFVVSGIVHSKNVSHKSM 207 (1390)
Q Consensus 129 hl~~l~~q~L~sk~l~~~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~D-S~lI~GvV~~Kn~ahk~M 207 (1390)
.+.+++.+++.+ .+.+++++++|+..+.++ + .|.| .+||+..| +++++|++|++.+.|..|
T Consensus 140 ~l~~va~ts~~~-------~~~l~~lv~~A~~~v~~~--~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~ 201 (520)
T cd03344 140 EIAQVATISANG-------DEEIGELIAEAMEKVGKD--G-------VITV--EEGKTLETELEVVEGMQFDRGYLSPYF 201 (520)
T ss_pred HHHHHHHHhcCC-------hHHHHHHHHHHHHHhccC--C-------cEEE--EeCCCcceeEEEEeeEEecCCCCCCcc
Confidence 455666655543 688999999999987642 1 2444 58999999 799999999999887764
Q ss_pred -------cceecCCcEEEEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCC
Q psy18037 208 -------LTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGI 280 (1390)
Q Consensus 208 -------~~~i~nprIlLL~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI 280 (1390)
++.++||+|++++++|... +.+..++++|.+.|++||+++++|++.|+++|.++||
T Consensus 202 ~~~~~~~~~~~~n~~Ili~d~~l~~~-----------------~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i 264 (520)
T cd03344 202 VTDPEKMEVELENPYILLTDKKISSI-----------------QELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKL 264 (520)
T ss_pred ccCcccCeEEeeCCEEEEECCCCCCH-----------------HHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCC
Confidence 4689999999999996321 1244578999999999999999999999999999999
Q ss_pred ------EEEEcc-----ChhHHHHHHHHhCCeEee-----ecccccCCccccccceEEEEEEecCCcEEEEEecCCCC--
Q psy18037 281 ------TLVLNV-----KTTVLERIARCTRADLVY-----SVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFP-- 342 (1390)
Q Consensus 281 ------~vv~nV-----K~~~LeRIAr~TgA~Ii~-----Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~-- 342 (1390)
++++++ ++++|+|||++|||.+++ +++ .++...||+|+.|++.+ +++++|+||.++
T Consensus 265 ~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~-~~~~~~LG~~~~v~~~~-----~~~~~i~~~~~~~~ 338 (520)
T cd03344 265 RGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLE-DVTLEDLGRAKKVVVTK-----DDTTIIGGAGDKAA 338 (520)
T ss_pred ccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcc-cCCHHHCCcceEEEEee-----ceEEEEeCCCCHHH
Confidence 887766 899999999999999999 778 67888999999999865 578999999743
Q ss_pred --------------------------------CCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH------------HHHH
Q psy18037 343 --------------------------------HKGSTVILRGASRKELMKVKRVTSFMIYVLYN------------WKLE 378 (1390)
Q Consensus 343 --------------------------------~~g~TIlLRG~s~~~L~evKr~l~dal~vv~n------------~~LE 378 (1390)
...|||+|||+|+.+++|++|.++||++++++ .+++
T Consensus 339 i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~ 418 (520)
T cd03344 339 IKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLR 418 (520)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHH
Confidence 15899999999999999999999999999998 6889
Q ss_pred HHHHHHHhhhhccCCCC
Q psy18037 379 SSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 379 ~s~~ld~~a~~~~g~~~ 395 (1390)
++..+.+++. ++|+++
T Consensus 419 ~s~~L~~~~~-~~~~~~ 434 (520)
T cd03344 419 ASPALDKLKA-LNGDEK 434 (520)
T ss_pred HHHHHHHhcc-CChHHH
Confidence 9999998876 666554
No 41
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.89 E-value=8.8e-22 Score=243.71 Aligned_cols=216 Identities=17% Similarity=0.178 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC-------CcceecCCcEEE
Q psy18037 146 SWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS-------MLTALNNPKILI 218 (1390)
Q Consensus 146 ~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~-------M~~~i~nprIlL 218 (1390)
.+.+.+++++++|+..+.++ + .|.|++.+| ...||++++|++|++.+.|.. |++.++||+|++
T Consensus 152 ~~~~~ls~lv~~Av~~v~~~--g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv 221 (542)
T PRK00013 152 NGDEEIGKLIAEAMEKVGKE--G-------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILI 221 (542)
T ss_pred cchHHHHHHHHHHHHHhCcC--C-------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEE
Confidence 37899999999999988643 1 388988887 888999999999999999884 489999999999
Q ss_pred EEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcC------CEEEEccC-----
Q psy18037 219 LQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLG------ITLVLNVK----- 287 (1390)
Q Consensus 219 L~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~G------I~vv~nVK----- 287 (1390)
+++.|. +.+ .+..+++.|.+.|++|||++++|++.|+++|..++ |++|++++
T Consensus 222 ~d~~i~---------~~~--------~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r 284 (542)
T PRK00013 222 TDKKIS---------NIQ--------DLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRR 284 (542)
T ss_pred EcCccC---------CHH--------HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccch
Confidence 999653 222 24477999999999999999999999999999997 89999887
Q ss_pred hhHHHHHHHHhCCeEee-----ecccccCCccccccceEEEEEEecCCcEEEEEecCCCCCC------------------
Q psy18037 288 TTVLERIARCTRADLVY-----SVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHK------------------ 344 (1390)
Q Consensus 288 ~~~LeRIAr~TgA~Ii~-----Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~~------------------ 344 (1390)
+.+|+|||++|||.+++ +++ .++..+||+|+.|++.. +++++|+||.++..
T Consensus 285 ~~~l~~ia~~tG~~~i~~~~~~~~~-~~~~~~LG~~~~v~~~~-----~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~ 358 (542)
T PRK00013 285 KAMLEDIAILTGGTVISEELGLKLE-DATLEDLGQAKKVVVTK-----DNTTIVDGAGDKEAIKARVAQIKAQIEETTSD 358 (542)
T ss_pred hhhHHHHHHHcCCEEecccccCCcc-cCCHHHCCeeeEEEEec-----CEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCH
Confidence 88999999999999999 788 78888999999999853 68999999985321
Q ss_pred ----------------eEEEEEecCCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 345 ----------------GSTVILRGASRKELMKVKRVTSFMIYVLYN------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 345 ----------------g~TIlLRG~s~~~L~evKr~l~dal~vv~n------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
.|||+|||+|+.+++|++|.++||++++++ .+++++..+.++ ..++|+++
T Consensus 359 ~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~ 436 (542)
T PRK00013 359 YDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGDEA 436 (542)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChHHH
Confidence 789999999999999999999999999998 688899888877 44444433
No 42
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.88 E-value=3.2e-21 Score=239.80 Aligned_cols=215 Identities=20% Similarity=0.187 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcc-eeEEeEEEeeccCCCC-------CcceecCCcEEE
Q psy18037 147 WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDS-FVVSGIVHSKNVSHKS-------MLTALNNPKILI 218 (1390)
Q Consensus 147 w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS-~lI~GvV~~Kn~ahk~-------M~~~i~nprIlL 218 (1390)
+.+.|++++++|+..+.++ + .|.+++||++.|| ++++|++|++.+.|.. |+..++||+|++
T Consensus 165 ~~~~l~~li~eAv~~vg~~--g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili 233 (555)
T PTZ00114 165 GDVEIGSLIADAMDKVGKD--G---------TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILV 233 (555)
T ss_pred ChHHHHHHHHHHHHHhCcC--C---------cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEE
Confidence 4678999999999988643 1 2788999999999 7999999999998875 589999999999
Q ss_pred EEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcC------CEEEEc-----cC
Q psy18037 219 LQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLG------ITLVLN-----VK 287 (1390)
Q Consensus 219 L~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~G------I~vv~n-----VK 287 (1390)
++++|+.. +.+..++++|.+.|.+||+++++|++.|+++|..++ |+++++ ++
T Consensus 234 ~d~~L~~~-----------------~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~ 296 (555)
T PTZ00114 234 TDKKISSI-----------------QSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNR 296 (555)
T ss_pred EcCCCCCH-----------------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcch
Confidence 99999821 125677889999999999999999999999999996 899977 77
Q ss_pred hhHHHHHHHHhCCeEeeec------ccccCCccccccceEEEEEEecCCcEEEEEecCCC--------------------
Q psy18037 288 TTVLERIARCTRADLVYSV------DVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAF-------------------- 341 (1390)
Q Consensus 288 ~~~LeRIAr~TgA~Ii~Si------d~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~-------------------- 341 (1390)
+.+|+|||++|||.++++. + .+++..||+|+.|++.+. .+++|+||..
T Consensus 297 ~~~l~~la~~tG~~~i~~~~~~~~l~-~~~~~~LG~a~~v~~~~~-----~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~ 370 (555)
T PTZ00114 297 KDILQDIAVLTGATVVSEDNVGLKLD-DFDPSMLGSAKKVTVTKD-----ETVILTGGGDKAEIKERVELLRSQIERTTS 370 (555)
T ss_pred HHHHHHHHHHhCCEEecccccccCcc-cCCHHHcCCCceEEEEec-----eEEEEeCCCcHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999998 6 577788999999999873 4566677751
Q ss_pred --------------CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhh--hccCC
Q psy18037 342 --------------PHKGSTVILRGASRKELMKVKRVTSFMIYVLYN------------WKLESSLLMDEQAY--VIQTK 393 (1390)
Q Consensus 342 --------------~~~g~TIlLRG~s~~~L~evKr~l~dal~vv~n------------~~LE~s~~ld~~a~--~~~g~ 393 (1390)
....|||+|||+|+.+++|.+|.++||++++++ .+++++..+++++. .++|+
T Consensus 371 ~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~ 450 (555)
T PTZ00114 371 EYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPD 450 (555)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchH
Confidence 135899999999999999999999999999998 68999999988764 34444
Q ss_pred CC
Q psy18037 394 KP 395 (1390)
Q Consensus 394 ~~ 395 (1390)
++
T Consensus 451 ~~ 452 (555)
T PTZ00114 451 QR 452 (555)
T ss_pred HH
Confidence 33
No 43
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.87 E-value=4.2e-21 Score=237.87 Aligned_cols=216 Identities=16% Similarity=0.181 Sum_probs=185.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCC-------CcceecCCcEEE
Q psy18037 146 SWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS-------MLTALNNPKILI 218 (1390)
Q Consensus 146 ~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~-------M~~~i~nprIlL 218 (1390)
.+.+.|++++++|+..+.++ + .|.|++.. |...++++++|++|++.+.|.. |++.++||+|++
T Consensus 153 ~~~~~l~~lv~~Av~~vg~~--g-------~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv 222 (541)
T PRK12851 153 NGDAEIGRLVAEAMEKVGNE--G-------VITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILI 222 (541)
T ss_pred cChHHHHHHHHHHHHHhccc--C-------ceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEE
Confidence 47899999999999988642 1 35777666 6778999999999999999874 999999999999
Q ss_pred EEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCC------EEEEc-----cC
Q psy18037 219 LQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGI------TLVLN-----VK 287 (1390)
Q Consensus 219 L~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI------~vv~n-----VK 287 (1390)
++++|+ +++ .+..+++.|.+.|++||+++++|++.|+++|..+|| ++|++ ++
T Consensus 223 ~d~~i~---------~~~--------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~ 285 (541)
T PRK12851 223 HEKKIS---------NLQ--------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRR 285 (541)
T ss_pred EcCCcC---------cHH--------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCcccccc
Confidence 999864 111 266789999999999999999999999999999997 78885 99
Q ss_pred hhHHHHHHHHhCCeEee-----ecccccCCccccccceEEEEEEecCCcEEEEEecCCCCC-------------------
Q psy18037 288 TTVLERIARCTRADLVY-----SVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPH------------------- 343 (1390)
Q Consensus 288 ~~~LeRIAr~TgA~Ii~-----Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~------------------- 343 (1390)
+.+|+|||++|||.+++ +++ .++...||+|+.|++.+ +++++|+||.++.
T Consensus 286 ~~~l~~ia~~tGa~~i~~~~~~~~~-~~~~~~LG~~~~v~~~~-----~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~ 359 (541)
T PRK12851 286 KAMLEDIAILTGGTVISEDLGIKLE-NVTLEQLGRAKKVVVEK-----ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSD 359 (541)
T ss_pred HhHHHHHHHHhCCEEeccCCCCCcC-cCCHHHcCCccEEEEEc-----ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999 687 67888899999999965 6889999998431
Q ss_pred ---------------CeEEEEEecCCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 344 ---------------KGSTVILRGASRKELMKVKRVTSFMIYVLYN------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 344 ---------------~g~TIlLRG~s~~~L~evKr~l~dal~vv~n------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
..|||+|||+|+.+++|+||.++||++++++ .+++++..+++++.. +|+++
T Consensus 360 ~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~~ 437 (541)
T PRK12851 360 YDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGDQR 437 (541)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcHHH
Confidence 2789999999999999999999999999998 688999999887654 44443
No 44
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.87 E-value=7.6e-21 Score=235.12 Aligned_cols=214 Identities=16% Similarity=0.174 Sum_probs=179.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCC-CcceeEEeEEEeeccCCCCC-------cceecCCcEE
Q psy18037 146 SWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTR-NDSFVVSGIVHSKNVSHKSM-------LTALNNPKIL 217 (1390)
Q Consensus 146 ~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~-~DS~lI~GvV~~Kn~ahk~M-------~~~i~nprIl 217 (1390)
.+.+.+++++++|+..+.++ + .|.|+. ||.. .+|++++|++|++.+.|..| ++.++||+|+
T Consensus 151 ~~~~~l~~lv~~A~~~v~~~---~------~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Il 219 (524)
T TIGR02348 151 NNDEEIGSLIAEAMEKVGKD---G------VITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYIL 219 (524)
T ss_pred cChHHHHHHHHHHHHHhCcC---C------cEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceee
Confidence 46889999999999988643 1 234443 6766 67999999999999998865 8999999999
Q ss_pred EEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHc------CCEEEEccCh---
Q psy18037 218 ILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQL------GITLVLNVKT--- 288 (1390)
Q Consensus 218 LL~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~------GI~vv~nVK~--- 288 (1390)
++++.|+- . +.+..++++|.+.|++||+++++|++.|+++|..+ ||++|++++.
T Consensus 220 i~d~~i~~---------~--------~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~ 282 (524)
T TIGR02348 220 ITDKKISN---------I--------KDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDR 282 (524)
T ss_pred eccCCcCC---------H--------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccch
Confidence 99996541 1 11577899999999999999999999999999987 8999988855
Q ss_pred --hHHHHHHHHhCCeEee-----ecccccCCccccccceEEEEEEecCCcEEEEEecCCCCC------------------
Q psy18037 289 --TVLERIARCTRADLVY-----SVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPH------------------ 343 (1390)
Q Consensus 289 --~~LeRIAr~TgA~Ii~-----Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~~------------------ 343 (1390)
.+|+|||++|||.+++ +++ .++..+||+|+.|++.. +++++|+||.++.
T Consensus 283 r~~~l~~ia~~tG~~~i~~~~~~~~~-~~~~~~LG~~~~v~~~~-----~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~ 356 (524)
T TIGR02348 283 RKAMLEDIAILTGGQVISEELGLKLE-EVTLDDLGKAKKVTVDK-----DNTTIVEGAGDKAAIKARVAQIKAQIEETTS 356 (524)
T ss_pred hhhhHHHHHHHhCCEEecccccCCcC-cCCHHHCCCceEEEEee-----cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 7999999999999999 888 78889999999999864 5789999987422
Q ss_pred ----------------CeEEEEEecCCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhccCCC
Q psy18037 344 ----------------KGSTVILRGASRKELMKVKRVTSFMIYVLYN------------WKLESSLLMDEQAYVIQTKK 394 (1390)
Q Consensus 344 ----------------~g~TIlLRG~s~~~L~evKr~l~dal~vv~n------------~~LE~s~~ld~~a~~~~g~~ 394 (1390)
..+||+|||+|+.+++|++|.++||++++++ .+++++..+.+ +..++|.+
T Consensus 357 ~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~ 434 (524)
T TIGR02348 357 DYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDE 434 (524)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHH
Confidence 1689999999999999999999999999998 68889988887 55544443
No 45
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.86 E-value=1.6e-20 Score=232.80 Aligned_cols=212 Identities=16% Similarity=0.179 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCCC-------cceecCCcEEEEE
Q psy18037 148 ASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSM-------LTALNNPKILILQ 220 (1390)
Q Consensus 148 ~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~M-------~~~i~nprIlLL~ 220 (1390)
.+.|++++++|+..+.++ +.+|++. .+..| .++++++|++|++.+.|..| ++.++||+|++++
T Consensus 155 ~~~l~~lv~eAv~~vg~~---g~i~v~~----~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d 224 (544)
T PRK12850 155 DESIGEMIAEAMDKVGKE---GVITVEE----AKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHE 224 (544)
T ss_pred HHHHHHHHHHHHHHhccc---CceeeEE----ccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEe
Confidence 688999999999998643 2344432 22444 69999999999999998764 8999999999999
Q ss_pred eeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCC------EEEEc-----cChh
Q psy18037 221 CAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGI------TLVLN-----VKTT 289 (1390)
Q Consensus 221 ~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI------~vv~n-----VK~~ 289 (1390)
+.|. ++ +.+..++++|.+.|++||+++++|++.|+++|.++|| ++|++ +++.
T Consensus 225 ~~i~---------~~--------~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~ 287 (544)
T PRK12850 225 KKIS---------NL--------QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKA 287 (544)
T ss_pred cccC---------CH--------HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHH
Confidence 9642 11 2277889999999999999999999999999999999 89887 9999
Q ss_pred HHHHHHHHhCCeEee-----ecccccCCccccccceEEEEEEecCCcEEEEEecCCCC----------------------
Q psy18037 290 VLERIARCTRADLVY-----SVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFP---------------------- 342 (1390)
Q Consensus 290 ~LeRIAr~TgA~Ii~-----Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~---------------------- 342 (1390)
+|+|||++|||.+++ +++ .++...||+|+.|++.. +++++|+||.++
T Consensus 288 ~le~ia~~tG~~~i~~~~~~~~~-~~~~~~LG~~~~v~~~~-----~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (544)
T PRK12850 288 MLEDIAVLTGGQVISEDLGIKLE-NVTLDMLGRAKRVLITK-----ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYD 361 (544)
T ss_pred HHHHHHHHhCCEEeccccCCCcc-cCCHHHcCCCcEEEEEe-----eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHH
Confidence 999999999999999 687 67888999999999865 578999999843
Q ss_pred ------------CCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhccCC
Q psy18037 343 ------------HKGSTVILRGASRKELMKVKRVTSFMIYVLYN------------WKLESSLLMDEQAYVIQTK 393 (1390)
Q Consensus 343 ------------~~g~TIlLRG~s~~~L~evKr~l~dal~vv~n------------~~LE~s~~ld~~a~~~~g~ 393 (1390)
...|||+|||+|+.+++|++|.++||++++++ .+++++..++++ ...+|+
T Consensus 362 ~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~~ 435 (544)
T PRK12850 362 REKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGL-KGANAD 435 (544)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCChH
Confidence 13799999999999999999999999999998 688888888876 343443
No 46
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.85 E-value=4.1e-20 Score=229.67 Aligned_cols=208 Identities=14% Similarity=0.169 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCC-CcceeEEeEEEeeccCCCC-------CcceecCCcEEEE
Q psy18037 148 ASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTR-NDSFVVSGIVHSKNVSHKS-------MLTALNNPKILIL 219 (1390)
Q Consensus 148 ~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~-~DS~lI~GvV~~Kn~ahk~-------M~~~i~nprIlLL 219 (1390)
.+.|++++++|+..|.++ +. |.|+. ||.. .++++++|++|++...+.. |+..++||+|+++
T Consensus 155 ~~~l~~li~eA~~~vg~~---g~------i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~ 223 (545)
T PRK12852 155 DAAIGKMIAQAMQKVGNE---GV------ITVEE--NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLH 223 (545)
T ss_pred hHHHHHHHHHHHHHhccC---Cc------eeeec--CCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEe
Confidence 578999999999998753 12 34442 7776 7999999999999988874 9999999999999
Q ss_pred EeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHc------CCEEEEccC-----h
Q psy18037 220 QCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQL------GITLVLNVK-----T 288 (1390)
Q Consensus 220 ~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~------GI~vv~nVK-----~ 288 (1390)
++.|. +. +++..+++.|.+.|++||+++++|++.|+++|..+ ||++|++.+ +
T Consensus 224 d~~i~---------~~--------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~ 286 (545)
T PRK12852 224 EKKLS---------GL--------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (545)
T ss_pred cCccC---------CH--------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchH
Confidence 87542 11 36777899999999999999999999999999886 899999665 8
Q ss_pred hHHHHHHHHhCCeEee-----ecccccCCccccccceEEEEEEecCCcEEEEEecCCCC---------------------
Q psy18037 289 TVLERIARCTRADLVY-----SVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFP--------------------- 342 (1390)
Q Consensus 289 ~~LeRIAr~TgA~Ii~-----Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~--------------------- 342 (1390)
.+|+|||++|||.+++ +++ .++...||+|+.|++.+ +.+++|+||.++
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~l~-~~~~~~lG~~~~v~~~~-----~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (545)
T PRK12852 287 AMLEDIAILTGGQLISEDLGIKLE-NVTLKMLGRAKKVVIDK-----ENTTIVNGAGKKADIEARVGQIKAQIEETTSDY 360 (545)
T ss_pred hHHHHHHHhcCCEEEecCcCCCcC-CCCHHHCCCCcEEEEEc-----cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHH
Confidence 9999999999999999 687 78888999999999976 478899998742
Q ss_pred -------------CCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhh
Q psy18037 343 -------------HKGSTVILRGASRKELMKVKRVTSFMIYVLYN------------WKLESSLLMDEQAYV 389 (1390)
Q Consensus 343 -------------~~g~TIlLRG~s~~~L~evKr~l~dal~vv~n------------~~LE~s~~ld~~a~~ 389 (1390)
...|||+|||+|+.+++|+||.++||++++++ .+++++..+++++..
T Consensus 361 ~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~ 432 (545)
T PRK12852 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINND 432 (545)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcC
Confidence 36899999999999999999999999999998 688999988887644
No 47
>CHL00093 groEL chaperonin GroEL
Probab=99.84 E-value=7.7e-20 Score=226.46 Aligned_cols=218 Identities=16% Similarity=0.179 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcceeEEeEEEeeccCCCCC---cc----eecCCcEEE
Q psy18037 146 SWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSM---LT----ALNNPKILI 218 (1390)
Q Consensus 146 ~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS~lI~GvV~~Kn~ahk~M---~~----~i~nprIlL 218 (1390)
.+.+.|++++++|+..|.++ +.+|+ + -.+|...++++++|++|++...|..| ++ .++||+|++
T Consensus 152 ~~~~~l~~lv~eAv~~vg~~---g~i~~------~-~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili 221 (529)
T CHL00093 152 GNDEEVGSMIADAIEKVGRE---GVISL------E-EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILL 221 (529)
T ss_pred cChHHHHHHHHHHHHHhccC---Cceee------c-CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehh
Confidence 47889999999999988643 12332 2 12345677899999999999887754 43 599999999
Q ss_pred EEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHH--HHHH----cCCEEEEccC-----
Q psy18037 219 LQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQE--SLQQ----LGITLVLNVK----- 287 (1390)
Q Consensus 219 L~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~--~L~~----~GI~vv~nVK----- 287 (1390)
++++|++.+ ..+..++++|.+.|.++|+++++|++.|+. +|.+ +||++|++++
T Consensus 222 ~d~~le~~~----------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~ 285 (529)
T CHL00093 222 TDKKITLVQ----------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRR 285 (529)
T ss_pred hcCCCCchH----------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcch
Confidence 999999753 237788899999999999999999995555 4477 5999999984
Q ss_pred hhHHHHHHHHhCCeEee-----ecccccCCccccccceEEEEEEecCCcEEEEEec---------CCCCC----------
Q psy18037 288 TTVLERIARCTRADLVY-----SVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEG---------CAFPH---------- 343 (1390)
Q Consensus 288 ~~~LeRIAr~TgA~Ii~-----Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~feg---------c~~~~---------- 343 (1390)
+.+|+|||++|||.+++ +++ .++..+||+|+.+++.. +++++|++ |....
T Consensus 286 k~~l~~ia~~tGa~~i~~~~~~~~~-~~~~~~LG~~~~v~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 359 (529)
T CHL00093 286 KAMLEDIAILTGGQVITEDAGLSLE-TIQLDLLGQARRIIVTK-----DSTTIIADGNEEQVKARCEQLRKQIEIADSSY 359 (529)
T ss_pred HHHHHHHHHhhCCEEecccccCCcC-CCCHHHCCcceEEEEec-----CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHH
Confidence 47899999999999999 788 78888999999999864 57788875 43211
Q ss_pred --------------CeEEEEEecCCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhh-hccCCCC
Q psy18037 344 --------------KGSTVILRGASRKELMKVKRVTSFMIYVLYN------------WKLESSLLMDEQAY-VIQTKKP 395 (1390)
Q Consensus 344 --------------~g~TIlLRG~s~~~L~evKr~l~dal~vv~n------------~~LE~s~~ld~~a~-~~~g~~~ 395 (1390)
..|||+|||+|+.+++|.||.++||++++++ .++++|..+++++. .++|+++
T Consensus 360 ~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~ 438 (529)
T CHL00093 360 EKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDEL 438 (529)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHH
Confidence 3788999999999999999999999999998 68999999998875 4555443
No 48
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.82 E-value=1.7e-19 Score=224.95 Aligned_cols=219 Identities=16% Similarity=0.201 Sum_probs=181.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcc-eeEEeEEEeeccCCC-------CCcceecCCcEE
Q psy18037 146 SWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDS-FVVSGIVHSKNVSHK-------SMLTALNNPKIL 217 (1390)
Q Consensus 146 ~w~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS-~lI~GvV~~Kn~ahk-------~M~~~i~nprIl 217 (1390)
.+.+.|.+|+++|+..|.++ +.++ + ..||+..|+ ++++|++|++...|. +|++.++||+||
T Consensus 207 ~~~~~i~~liaeAv~~Vg~~---g~i~------v--~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Il 275 (600)
T PLN03167 207 GNNYEVGNMIAEAMSKVGRK---GVVT------L--EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLL 275 (600)
T ss_pred cCcHHHHHHHHHHHHHhccC---CcEE------e--ccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEE
Confidence 35668999999999998643 1222 2 269999998 899999999999988 899999999999
Q ss_pred EEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHH------HcCCEEEEccC----
Q psy18037 218 ILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQ------QLGITLVLNVK---- 287 (1390)
Q Consensus 218 LL~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~------~~GI~vv~nVK---- 287 (1390)
++++.|+ +.++++ .+++.|...|+++|++.++|++.|+++|. ..+|.+|++++
T Consensus 276 l~d~~i~---------~~~~l~--------~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~ 338 (600)
T PLN03167 276 LVDKKIT---------NARDLI--------GILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGER 338 (600)
T ss_pred EEccccC---------CHHHHH--------HHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcc
Confidence 9997532 222222 23457788999999999999999999999 88999999995
Q ss_pred -hhHHHHHHHHhCCeEee-----ecccccCCccccccceEEEEE-----EecCC--------cEEEEEecCCC-------
Q psy18037 288 -TTVLERIARCTRADLVY-----SVDVLLNQIHLGTCSRFSVKK-----LSDSN--------KTLMFFEGCAF------- 341 (1390)
Q Consensus 288 -~~~LeRIAr~TgA~Ii~-----Sid~~l~~~~LG~c~~f~v~~-----~~~~~--------kt~i~fegc~~------- 341 (1390)
..+|++||.+|||.+++ +++ .++...||+|+.|++.+ + ++ +.+.+|++|..
T Consensus 339 ~~~~L~dia~~tGa~~i~~~~~~~l~-~~~~~~LG~a~~v~~~~~~t~ii--g~~~~~~~i~~r~~~i~~~~~~~~~~~~ 415 (600)
T PLN03167 339 KSQYLDDIAILTGGTVIREEVGLSLD-KVGKEVLGTAAKVVLTKDTTTIV--GDGSTQEAVNKRVAQIKNLIEAAEQDYE 415 (600)
T ss_pred hHHHHHHHHHhhCCEEecccccCCcc-cCCHHHCceeeEEEEecccceee--CCCccHHHHHHHHHHHHhhhhccCCHHH
Confidence 88999999999999999 677 67888999999999987 5 44 47888888751
Q ss_pred -----C-----CCeEEEE-EecCCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhccCCCC
Q psy18037 342 -----P-----HKGSTVI-LRGASRKELMKVKRVTSFMIYVLYN------------WKLESSLLMDEQAYVIQTKKP 395 (1390)
Q Consensus 342 -----~-----~~g~TIl-LRG~s~~~L~evKr~l~dal~vv~n------------~~LE~s~~ld~~a~~~~g~~~ 395 (1390)
. ..++||| |||+|+.+++|+||.++||++++++ .+++++..+++++..+.++++
T Consensus 416 ~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq 492 (600)
T PLN03167 416 KEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQ 492 (600)
T ss_pred HHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhH
Confidence 1 1267877 9999999999999999999999998 688999999988776666554
No 49
>PRK14104 chaperonin GroEL; Provisional
Probab=99.81 E-value=2.9e-18 Score=212.72 Aligned_cols=205 Identities=16% Similarity=0.164 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCC-CcceeEEeEEEeeccCCCCC-------cceecCCcEEEE
Q psy18037 148 ASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTR-NDSFVVSGIVHSKNVSHKSM-------LTALNNPKILIL 219 (1390)
Q Consensus 148 ~~~l~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~-~DS~lI~GvV~~Kn~ahk~M-------~~~i~nprIlLL 219 (1390)
.+.|++++++|+..+.++ + .|.|..+ +.. .++++++|++|++.+.|..| +..++||+|++.
T Consensus 155 d~~i~~lv~~Av~~vg~~---g------~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~ 223 (546)
T PRK14104 155 DAEIGKFLADAMKKVGNE---G------VITVEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILIN 223 (546)
T ss_pred chHHHHHHHHHHHHhccC---C------ceeeEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEe
Confidence 366999999999988643 1 3555544 445 59999999999999998755 788999999999
Q ss_pred EeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHH------cCCEEEEccC-----h
Q psy18037 220 QCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQ------LGITLVLNVK-----T 288 (1390)
Q Consensus 220 ~~~Ley~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~------~GI~vv~nVK-----~ 288 (1390)
+.. +.++ +.+..+++.|.+.|.+||+++++|++.|+++|.. .||++|++++ +
T Consensus 224 d~~---------i~~~--------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~ 286 (546)
T PRK14104 224 EKK---------LSSL--------NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (546)
T ss_pred hhh---------hcCH--------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchH
Confidence 822 2333 2266889999999999999999999999999985 6899998877 7
Q ss_pred hHHHHHHHHhCCeEeee-----cccccCCccccccceEEEEEEecCCcEEEEEecCCCC---------------------
Q psy18037 289 TVLERIARCTRADLVYS-----VDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFP--------------------- 342 (1390)
Q Consensus 289 ~~LeRIAr~TgA~Ii~S-----id~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~~~--------------------- 342 (1390)
.+|++||++|||.++++ ++ .++...||+|+.+++ +.+.+++|+||.++
T Consensus 287 ~~l~~ia~~tG~~~i~~~~~~~l~-~~~~~~LG~a~~v~~-----~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (546)
T PRK14104 287 AMLQDIAILTGGQAISEDLGIKLE-NVTLQMLGRAKKVMI-----DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDY 360 (546)
T ss_pred HHHHHHHHHhCCEEEecCCCCCcC-cCCHHHCCceeEEEE-----cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 89999999999999999 87 788889999999886 56788999999843
Q ss_pred -------------CCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHh
Q psy18037 343 -------------HKGSTVILRGASRKELMKVKRVTSFMIYVLYN------------WKLESSLLMDEQ 386 (1390)
Q Consensus 343 -------------~~g~TIlLRG~s~~~L~evKr~l~dal~vv~n------------~~LE~s~~ld~~ 386 (1390)
...|||+|||+|+.+++|+||.++||++++++ .+++++..+.++
T Consensus 361 ~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~ 429 (546)
T PRK14104 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGI 429 (546)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHh
Confidence 36899999999999999999999999999998 578888888776
No 50
>KOG0357|consensus
Probab=99.77 E-value=6.4e-19 Score=195.88 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=141.1
Q ss_pred HHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccChhHHHHHHHHhCCeEeeecccccCCccccccceEEEEE
Q psy18037 246 LRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKK 325 (1390)
Q Consensus 246 L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~c~~f~v~~ 325 (1390)
+..+++.|.+.|+++++||+|.+|-|.++|.+++..+|++|...+||-||-+|||+|++.+. .+++.+||+|+.+++.+
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~-eL~~~kLG~aglVrE~s 222 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFS-ELTAEKLGFAGLVREIS 222 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHh-hhCHhhccccceEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred EecCCcEEEEEecCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccC
Q psy18037 326 LSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVLYN-------------WKLESSLLMDEQAYVIQT 392 (1390)
Q Consensus 326 ~~~~~kt~i~fegc~~~~~g~TIlLRG~s~~~L~evKr~l~dal~vv~n-------------~~LE~s~~ld~~a~~~~g 392 (1390)
|....++++++|.|+| .+.+||.+||+|..+++|+||++|||+||++| .|+-.|+.+.+-|..++|
T Consensus 223 fgttkdkmlviEqc~n-skaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g 301 (400)
T KOG0357|consen 223 FGTTKDKMLVIEQCKN-SKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPG 301 (400)
T ss_pred cccccceEEEEEecCC-CceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCc
Confidence 9766789999999995 88999999999999999999999999999999 688889999988888888
Q ss_pred CCC
Q psy18037 393 KKP 395 (1390)
Q Consensus 393 ~~~ 395 (1390)
.+|
T Consensus 302 ~eq 304 (400)
T KOG0357|consen 302 IEQ 304 (400)
T ss_pred HHH
Confidence 776
No 51
>KOG0230|consensus
Probab=99.06 E-value=4.5e-11 Score=153.77 Aligned_cols=124 Identities=34% Similarity=0.440 Sum_probs=80.3
Q ss_pred ccccccccccCCCccEEeeCCCCchhhhhccC-ChhhHHHHHHHh-----------------------hhc--ccc-ccc
Q psy18037 1115 EAQQHHTLALGCSVPVVVYEQEPSSIISYALS-SFDYQYKLEELK-----------------------AAH--EIE-TNE 1167 (1390)
Q Consensus 1115 ~~~eH~~l~~g~~~~v~v~e~epss~ia~~L~-s~~y~~~~~~~~-----------------------~~~--~~~-~~~ 1167 (1390)
+++.|.+.... ...+..+.+|++.|||+++ ..+|-.++.+.. ..+ +.. ...
T Consensus 1239 p~s~ia~al~s--~~~~~q~~~p~~sis~~~S~~~~~~s~~~e~~~~~~~sl~~s~l~~s~~~~~e~l~~~~~~~~~h~~ 1316 (1598)
T KOG0230|consen 1239 PPSLIAYALSS--KERINQESSPGLSISFSLSNLQGRLSKISEFDDTKSESLDNSGLESSSYRRGENLQKSKLETRTHLE 1316 (1598)
T ss_pred Cchhhhhhhcc--hhhccCCCCCCccccccccccccchhhhhhhhhhhhccccccccchhhhcchhhcccccccccccee
Confidence 46777776652 3488999999999999999 666665554431 122 110 000
Q ss_pred CCCCcceeeecCCCcceEEEEccHHHHHHHHHhhCCCChhHHHhhhhhhhhhcccCCCCCCcccccCchHHHHhhhcccc
Q psy18037 1168 CKIPHIDIKFSDTAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLE 1247 (1390)
Q Consensus 1168 ~~~~h~~~~f~~~~~~~~~~~y~~~~F~~lR~~~~~~~~~~~~~Sl~r~~~~~~~~gksgs~f~~t~d~~~~~~e~~~~~ 1247 (1390)
.+..--+..| .++.++..-|- .++.+---.-. +|++||+||.+|+|+|||||+.|+||.|||||+|||+|.|
T Consensus 1317 ~~f~egk~k~---svk~~yAe~F~-~LR~~c~~sEe----~fIrSLsRc~~W~aqGGKSgs~F~KTlDDRFIiKq~sk~E 1388 (1598)
T KOG0230|consen 1317 YQFSEGKAKY---SVKCYYAEQFR-ALRKICCPSEE----DFIRSLSRCVKWEAQGGKSGSFFAKTLDDRFIIKQMSKTE 1388 (1598)
T ss_pred eeccCCceEE---EEEEEehhhHH-HHHHhhCchHH----HHHHHHhcCcccccCCCcccceeeccccchhhhhhccHHH
Confidence 0001101111 12234444443 33433322223 5899999999999999999999999999999999999998
Q ss_pred c
Q psy18037 1248 K 1248 (1390)
Q Consensus 1248 ~ 1248 (1390)
.
T Consensus 1389 l 1389 (1598)
T KOG0230|consen 1389 L 1389 (1598)
T ss_pred H
Confidence 6
No 52
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=96.47 E-value=0.001 Score=79.48 Aligned_cols=59 Identities=37% Similarity=0.495 Sum_probs=50.2
Q ss_pred eEEEEccHHHHHHHHHhhCCCChhHHHhhhhhhhhhcccCCCCCCcccccCchHHHHhhhccccc
Q psy18037 1184 FSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEK 1248 (1390)
Q Consensus 1184 ~~~~~y~~~~F~~lR~~~~~~~~~~~~~Sl~r~~~~~~~~gksgs~f~~t~d~~~~~~e~~~~~~ 1248 (1390)
.+|..-|- +|++|-..-+. |+.+++|||-||..||||||.|.+|.|.+||+|++++.|.
T Consensus 340 ~y~~e~Fr-~lR~l~g~~~a-----lvsl~sryil~E~~~GKSGSff~~trD~kfIiKti~hsE~ 398 (612)
T COG5253 340 DYFPEVFR-ELRALCGCDEA-----LVSLLSRYILWESNGGKSGSFFLFTRDYKFIIKTISHSEH 398 (612)
T ss_pred hhCHHHHH-HHHHHhCCcHH-----HHHHHhhhheeccCCCcccceEEEeccchhhhhhhhhhhH
Confidence 35555443 78888877776 6789999999999999999999999999999999998775
No 53
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=94.45 E-value=0.0087 Score=70.43 Aligned_cols=41 Identities=56% Similarity=0.853 Sum_probs=36.9
Q ss_pred HHHhhhhhhhhhccc-CCCCCCcccccCchHHHHhhhccccc
Q psy18037 1208 SFIRSLSRCIRWEAR-GGKSGSNFCKTKDDRFILKEMSRLEK 1248 (1390)
Q Consensus 1208 ~~~~Sl~r~~~~~~~-~gksgs~f~~t~d~~~~~~e~~~~~~ 1248 (1390)
+|++||++|-.||.. ||||||.|..|.|++|++|.+++.|.
T Consensus 80 dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~ 121 (313)
T cd00139 80 DYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEI 121 (313)
T ss_pred HHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHH
Confidence 478899999999996 99999999999999999999986654
No 54
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=94.19 E-value=0.011 Score=70.44 Aligned_cols=41 Identities=46% Similarity=0.647 Sum_probs=36.9
Q ss_pred HHHhhhhhhhh-hcccCCCCCCcccccCchHHHHhhhccccc
Q psy18037 1208 SFIRSLSRCIR-WEARGGKSGSNFCKTKDDRFILKEMSRLEK 1248 (1390)
Q Consensus 1208 ~~~~Sl~r~~~-~~~~~gksgs~f~~t~d~~~~~~e~~~~~~ 1248 (1390)
+|++||++|.. |.++|||||+.|..|.|++|++|.+++.|.
T Consensus 53 ~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti~~~E~ 94 (342)
T smart00330 53 DYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSKSEI 94 (342)
T ss_pred HHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEecCHHHH
Confidence 47789998875 999999999999999999999999987764
No 55
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=90.15 E-value=0.12 Score=49.16 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=23.1
Q ss_pred ChhhhcccCCcceeccCCCCccCCCC
Q psy18037 1 MIAQALFDSEYIKCISGPGSGAGDSK 26 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~~~~f~~d~~ 26 (1390)
+|||+|+|+|+|+.|..+..|. |+|
T Consensus 52 ~~gq~Ll~~g~i~hV~~~~~F~-D~~ 76 (81)
T cd04448 52 AIGQALLDAGWIECVSDDDLFR-DEY 76 (81)
T ss_pred HHHHHHHHCCCEEecCCCCccc-cCc
Confidence 5899999999999998888999 986
No 56
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=87.85 E-value=0.21 Score=47.80 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=23.0
Q ss_pred ChhhhcccCCcceeccCCCCccCCCC
Q psy18037 1 MIAQALFDSEYIKCISGPGSGAGDSK 26 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~~~~f~~d~~ 26 (1390)
+|||+|+|+|+|+.|.++..|. |++
T Consensus 56 ~lgq~Ll~~gii~HV~~~h~F~-D~~ 80 (85)
T cd04441 56 QLCRRLLEHGIIQHVSNKHHFF-DSN 80 (85)
T ss_pred HHHHHHHHCCCEEecCCCCCcc-CCC
Confidence 4899999999999999999999 875
No 57
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=86.37 E-value=0.28 Score=46.86 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=22.8
Q ss_pred ChhhhcccCCcceeccCCCCccCCCC
Q psy18037 1 MIAQALFDSEYIKCISGPGSGAGDSK 26 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~~~~f~~d~~ 26 (1390)
++||+|+|+|+|..|.++..|. |++
T Consensus 54 ~lg~~Ll~~G~i~HV~~~~~F~-D~~ 78 (83)
T cd04443 54 LYGRRLLQGGVLQHITNEHHFR-DEN 78 (83)
T ss_pred HHHHHHHHCCCEEecCCCcCEe-cCC
Confidence 4899999999999998899999 875
No 58
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=85.82 E-value=0.3 Score=46.50 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.8
Q ss_pred ChhhhcccCCcceeccCCC-CccCCCC
Q psy18037 1 MIAQALFDSEYIKCISGPG-SGAGDSK 26 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~~~-~f~~d~~ 26 (1390)
+|||+|+|+|+|+.|.++. .|. |++
T Consensus 52 ~lgq~Ll~~gvi~HV~~~h~~F~-D~~ 77 (82)
T cd04442 52 KIMQKLLDHSIIHHVCDEHKEFK-DAK 77 (82)
T ss_pred HHHHHHHHCCCEEeccCCcCcee-CCc
Confidence 4899999999999997775 799 875
No 59
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=85.55 E-value=0.33 Score=46.15 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.3
Q ss_pred ChhhhcccCCcceeccCCCCccCCCC
Q psy18037 1 MIAQALFDSEYIKCISGPGSGAGDSK 26 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~~~~f~~d~~ 26 (1390)
+|||+|+|+|+|..|.++..|. |++
T Consensus 52 ~lg~~Ll~~G~i~HV~~~h~Fk-D~~ 76 (81)
T cd04439 52 NLGQALLENGIIHHVSDKHQFK-NEQ 76 (81)
T ss_pred HHHHHHHHCCCEEecCCCCCEe-cCC
Confidence 4899999999999998888899 764
No 60
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=85.16 E-value=0.36 Score=46.03 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=23.1
Q ss_pred ChhhhcccCCcceeccCCCCccCCCC
Q psy18037 1 MIAQALFDSEYIKCISGPGSGAGDSK 26 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~~~~f~~d~~ 26 (1390)
+|||+|+|.|+|..|.++..|. |+|
T Consensus 54 ~lgq~Ll~~g~I~hv~~~~~F~-d~~ 78 (83)
T cd04449 54 ELGQELMNEGLIEHVSGRHPFL-DGF 78 (83)
T ss_pred HHHHHHHHCCCEEecCCCCCcc-CCC
Confidence 4899999999999998899999 886
No 61
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=84.14 E-value=0.44 Score=46.38 Aligned_cols=25 Identities=8% Similarity=0.216 Sum_probs=23.1
Q ss_pred ChhhhcccCCcceeccCCCCccCCCC
Q psy18037 1 MIAQALFDSEYIKCISGPGSGAGDSK 26 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~~~~f~~d~~ 26 (1390)
++||+|+|.|+|..|.++..|. |+|
T Consensus 61 ~~gq~Ll~~gii~HV~~~h~F~-D~~ 85 (93)
T cd04440 61 ILGVGLCNNGFMHHVLEKSEFK-DEP 85 (93)
T ss_pred HHHHHHHhCCCEEecCCCcCcC-CcC
Confidence 4799999999999999999999 886
No 62
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=80.10 E-value=0.45 Score=61.97 Aligned_cols=59 Identities=32% Similarity=0.495 Sum_probs=40.5
Q ss_pred EEEEccHHHHHHHHHhhCCCChhHHHhhhhhh--hhhcccCCCCCCcccccCchHHHHhhhccccc
Q psy18037 1185 SVKMYFADLFAELRKFSCPEGEESFIRSLSRC--IRWEARGGKSGSNFCKTKDDRFILKEMSRLEK 1248 (1390)
Q Consensus 1185 ~~~~y~~~~F~~lR~~~~~~~~~~~~~Sl~r~--~~~~~~~gksgs~f~~t~d~~~~~~e~~~~~~ 1248 (1390)
+|-.-|.... .+-..--. +|+.||.++ +++-.++|||||.|..|.|++|++|.|++.|.
T Consensus 409 Y~P~vFr~LR-~~fgId~~----dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~ 469 (765)
T PLN03185 409 YCPMVFRNLR-EMFKIDAA----DYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEV 469 (765)
T ss_pred ECHHHHHHHH-HHhCCCHH----HHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCHHHH
Confidence 5555555443 33333233 466666543 45567899999999999999999999987664
No 63
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=79.50 E-value=0.34 Score=55.69 Aligned_cols=33 Identities=42% Similarity=0.610 Sum_probs=21.8
Q ss_pred hhhhcccCCCCCCcccccCchHHHHhhhccccc
Q psy18037 1216 CIRWEARGGKSGSNFCKTKDDRFILKEMSRLEK 1248 (1390)
Q Consensus 1216 ~~~~~~~~gksgs~f~~t~d~~~~~~e~~~~~~ 1248 (1390)
|.+|..+|||||+.|..|.|.+|++|.+++.|.
T Consensus 8 ~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~ 40 (252)
T PF01504_consen 8 SLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEF 40 (252)
T ss_dssp ---ES---SSSSS-EEE-TTSSEEEEEE-HHHH
T ss_pred cccccCCCCCccCEEEEeCCCCEEEEeCCHHHH
Confidence 588999999999999999999999999986553
No 64
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=78.05 E-value=1.1 Score=46.18 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=23.1
Q ss_pred ChhhhcccCCcceeccCCCCccCCCC
Q psy18037 1 MIAQALFDSEYIKCISGPGSGAGDSK 26 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~~~~f~~d~~ 26 (1390)
.|||+|+|.|+|+.|..+..|. |++
T Consensus 55 ~lgq~Ll~~gvi~HV~~~h~F~-D~~ 79 (125)
T cd04437 55 GMWQVLLEEGVLLHVDQELHFQ-DKY 79 (125)
T ss_pred HHHHHHHhCCCeEEeCCcCccc-cCC
Confidence 3899999999999999899999 886
No 65
>KOG0356|consensus
Probab=72.07 E-value=39 Score=42.42 Aligned_cols=190 Identities=17% Similarity=0.179 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccceEEEEecCCCCCcc-eeEEeEEEeeccCC-------CCCcceecCCcEEEEEeee
Q psy18037 152 LPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDS-FVVSGIVHSKNVSH-------KSMLTALNNPKILILQCAI 223 (1390)
Q Consensus 152 ~~l~~~av~~v~pd~~~~~~Di~~yVkIkkI~GG~~~DS-~lI~GvV~~Kn~ah-------k~M~~~i~nprIlLL~~~L 223 (1390)
..++.+|+..|.++. .|.|+ .|....|. +++.|+=|+..... +++...++||+++|..-
T Consensus 172 g~li~~a~~kvG~~G---------VItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~k-- 238 (550)
T KOG0356|consen 172 GNLISDAMKKVGRKG---------VITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEK-- 238 (550)
T ss_pred HHHHHHHHHHhCcCC---------eEEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhh--
Confidence 346667777776531 13332 34454443 57788888776554 34556678888877542
Q ss_pred ecccccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEE-----------EccChhHHH
Q psy18037 224 VYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLV-----------LNVKTTVLE 292 (1390)
Q Consensus 224 ey~r~e~k~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv-----------~nVK~~~Le 292 (1390)
+.++++.++- -+-......+|=|++. ..|+..|+..|.=++.-+. .+-+...+.
T Consensus 239 -------ki~~v~~ivp-------~LE~A~~~~~PLliIA-eDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~ 303 (550)
T KOG0356|consen 239 -------KISSVQSIVP-------ALELALAKRRPLLIIA-EDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLK 303 (550)
T ss_pred -------hhhHHHHHhH-------HHHHhhhccCceEEEe-hhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhh
Confidence 2333332221 2222333456655554 6788888877654433222 333566799
Q ss_pred HHHHHhCCeEee------ecccccCCccccccceEEEEEEecCCcEEEEEecCC--------------------------
Q psy18037 293 RIARCTRADLVY------SVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCA-------------------------- 340 (1390)
Q Consensus 293 RIAr~TgA~Ii~------Sid~~l~~~~LG~c~~f~v~~~~~~~kt~i~fegc~-------------------------- 340 (1390)
.||-+|||.++. +++ .+...+||+|+.+.+-.- .-+.+.|-.
T Consensus 304 Diai~Tg~~v~~~e~~~l~le-~~~~~dLG~~~evvvtkd-----~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~e 377 (550)
T KOG0356|consen 304 DIAILTGATVFGEELSTLNLE-DAKLEDLGEVGEVVVTKD-----DTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKE 377 (550)
T ss_pred HHHHHhhhhhhccchhhcccc-cCchhhcCcceeEEEecC-----cceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHh
Confidence 999999998885 333 456789999998887542 223333210
Q ss_pred --C------CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q psy18037 341 --F------PHKGSTVILRGASRKELMKVKRVTSFMIYVLYNW 375 (1390)
Q Consensus 341 --~------~~~g~TIlLRG~s~~~L~evKr~l~dal~vv~n~ 375 (1390)
+ ....++|-+-|.++.++++-|..+.||+++.++.
T Consensus 378 kl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aa 420 (550)
T KOG0356|consen 378 KLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAA 420 (550)
T ss_pred HHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHH
Confidence 0 1235788888999999999999999999998864
No 66
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=71.19 E-value=2 Score=39.54 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=19.4
Q ss_pred ChhhhcccCCcceeccCCC-CccCCC
Q psy18037 1 MIAQALFDSEYIKCISGPG-SGAGDS 25 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~~~-~f~~d~ 25 (1390)
.|||+|++.|||+.|.++. .|. |+
T Consensus 43 ~l~q~Ll~~g~i~~v~~~~~~F~-d~ 67 (74)
T PF00610_consen 43 QLGQELLDHGFIEHVSDKSKQFK-DS 67 (74)
T ss_dssp HHHHHHHHCTSEEESSSSSHSS--SS
T ss_pred HHHHHHHHCCCEEECCCCCCCEE-CC
Confidence 3899999999999996666 699 65
No 67
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=64.86 E-value=2.9 Score=38.82 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.2
Q ss_pred ChhhhcccCCcceecc--CCCCccCCC
Q psy18037 1 MIAQALFDSEYIKCIS--GPGSGAGDS 25 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~--~~~~f~~d~ 25 (1390)
+|||+|+++|+|++|. ++..|. |+
T Consensus 44 ~l~~~ll~~g~i~~v~~~~~~~F~-d~ 69 (77)
T smart00049 44 HLGQLLLDEGLIHHVNGPNKHTFK-DS 69 (77)
T ss_pred HHHHHHHHCCCEEEeCCCCcCccc-cC
Confidence 4899999999999996 888898 64
No 68
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=61.13 E-value=25 Score=33.44 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccChhHHHHHHH
Q psy18037 248 NVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIAR 296 (1390)
Q Consensus 248 ~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK~~~LeRIAr 296 (1390)
.+.+.|...++++|+| ++|..-+...|.++||.++.....+.-+.|.+
T Consensus 44 ~~~~~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~ 91 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGAGGDIEEALEA 91 (94)
T ss_dssp HHHHHHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEESTSSBHHHHHHH
T ss_pred hHHHHHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcCCCCHHHHHHH
Confidence 3455666789999999 56999999999999999999866655555544
No 69
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=56.08 E-value=28 Score=37.45 Aligned_cols=51 Identities=37% Similarity=0.509 Sum_probs=36.4
Q ss_pred HHHHHhcCCCEEEecCCccHHHHHHHHHcCCEE-EEccCh------hHHHHHHHHhCC
Q psy18037 250 VARISALKPDIVLVQRNVARLAQESLQQLGITL-VLNVKT------TVLERIARCTRA 300 (1390)
Q Consensus 250 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~v-v~nVK~------~~LeRIAr~TgA 300 (1390)
+++|++++|||||.......-..+.|.+.||.+ +..... ..++.+++.+|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 457889999999987655555668899999954 443321 246778888874
No 70
>KOG0229|consensus
Probab=55.16 E-value=4.5 Score=49.11 Aligned_cols=33 Identities=39% Similarity=0.570 Sum_probs=26.8
Q ss_pred ccCCCCCCcccccCchHHHHhhhcccccChHHHHHH
Q psy18037 1221 ARGGKSGSNFCKTKDDRFILKEMSRLEKGEESFIRS 1256 (1390)
Q Consensus 1221 ~~~gksgs~f~~t~d~~~~~~e~~~~~~~~~~fi~S 1256 (1390)
..+|||||.|.-|+|+||++|-|.+.| -.+++.
T Consensus 136 sspGksGS~Fy~S~DdrFiIKTv~~~E---~~~l~~ 168 (420)
T KOG0229|consen 136 SSPGKSGSFFYLSYDDRFIIKTVRKSE---VKVLLK 168 (420)
T ss_pred cCCCCccceEEEecCceEEEEeccHHH---HHHHHH
Confidence 355999999999999999999998554 445555
No 71
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=50.16 E-value=37 Score=32.87 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccC
Q psy18037 248 NVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVK 287 (1390)
Q Consensus 248 ~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK 287 (1390)
.+++.|...++++|+|. ++..-+.+.|.++||.++.-..
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 46666777999999995 6999999999999999997776
No 72
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=48.75 E-value=36 Score=41.27 Aligned_cols=52 Identities=29% Similarity=0.320 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccCh-------hHHHHHHHHhCC
Q psy18037 249 VVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKT-------TVLERIARCTRA 300 (1390)
Q Consensus 249 ~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK~-------~~LeRIAr~TgA 300 (1390)
-+++|++++|||||....-.....+.|.+.||.++.--.. +.++.+++.+|-
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 4778999999999997655555678899999998653221 345677888775
No 73
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=48.40 E-value=32 Score=40.06 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEE-ccC-----hhHHHHHHHHhCCe
Q psy18037 249 VVARISALKPDIVLVQRNVARLAQESLQQLGITLVL-NVK-----TTVLERIARCTRAD 301 (1390)
Q Consensus 249 ~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~-nVK-----~~~LeRIAr~TgA~ 301 (1390)
-+++|++++||+||+..+.+....+.|.+.||.|+. ... ...++.+++.+|..
T Consensus 83 n~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 83 DMEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred CHHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 366899999999999888888788999999998753 221 22478888888853
No 74
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.84 E-value=42 Score=37.65 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=38.6
Q ss_pred HHHHHhcCCCEEEecCCccHH-HHHHHHHcCCEEEEccC------hhHHHHHHHHhCCe
Q psy18037 250 VARISALKPDIVLVQRNVARL-AQESLQQLGITLVLNVK------TTVLERIARCTRAD 301 (1390)
Q Consensus 250 V~rI~~~~pnVVlv~k~Vs~~-A~~~L~~~GI~vv~nVK------~~~LeRIAr~TgA~ 301 (1390)
+++|++++|||||+...-..- ..+.|.+.||.++.--. ...++.|++.+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 567889999999997655444 48889999998665321 23478889988875
No 75
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=43.51 E-value=10 Score=35.34 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.3
Q ss_pred ChhhhcccCCcceeccC-CCCccCCC
Q psy18037 1 MIAQALFDSEYIKCISG-PGSGAGDS 25 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~-~~~f~~d~ 25 (1390)
.|||.|++.|+|..|.. +..|. |+
T Consensus 52 ~~~~~ll~~g~i~~v~~~~~~F~-d~ 76 (81)
T cd04371 52 ELGQALLKHGLIHHVSDDKHTFR-DS 76 (81)
T ss_pred HHHHHHHHCCCEEEeCCCCCccc-cC
Confidence 48999999999999976 88898 65
No 76
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=41.47 E-value=49 Score=37.25 Aligned_cols=50 Identities=20% Similarity=0.388 Sum_probs=36.3
Q ss_pred HHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccC----hhHHHHHHHHhCC
Q psy18037 250 VARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVK----TTVLERIARCTRA 300 (1390)
Q Consensus 250 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK----~~~LeRIAr~TgA 300 (1390)
+++|++++||+||+...... ..+-|.+.|.+++.... ...++++++.+|.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~ 112 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNK 112 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCc
Confidence 45788999999999877666 67788888877665432 2356777777764
No 77
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=41.30 E-value=62 Score=31.16 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccC
Q psy18037 248 NVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVK 287 (1390)
Q Consensus 248 ~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK 287 (1390)
....-+...++++|+|. +|..-+...|.++||.++.-..
T Consensus 52 ~~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 52 LAARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 34555667999999997 5999999999999999997776
No 78
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=39.97 E-value=85 Score=32.42 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccChhHHHHHHHHhCCeE
Q psy18037 248 NVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADL 302 (1390)
Q Consensus 248 ~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK~~~LeRIAr~TgA~I 302 (1390)
.+.+-|++.|+|+|+| .+|.+-|..+|.++||-+..-....+=+.|-....+.+
T Consensus 56 ~~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g~l 109 (121)
T COG1433 56 RIAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEGEL 109 (121)
T ss_pred HHHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcCCc
Confidence 3566788999999999 68999999999999999998888666666666665543
No 79
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=35.77 E-value=1e+02 Score=36.99 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccChhHHHHHHHHhCCeEe
Q psy18037 247 RNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLV 303 (1390)
Q Consensus 247 ~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK~~~LeRIAr~TgA~Ii 303 (1390)
...++-|++.+|.+|+...+....+ +.|.++||.++..|..-..-+.+.-.|+|.+
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~~-~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQA-RALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHHH-HHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 4577788889999999998888764 8899999999999987777777777788766
No 80
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=35.46 E-value=11 Score=38.04 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=17.0
Q ss_pred ChhhhcccCCcceeccCCCCcc
Q psy18037 1 MIAQALFDSEYIKCISGPGSGA 22 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~~~~f~ 22 (1390)
+|||+|+|.|||++|. +..|.
T Consensus 55 ~l~q~Lmd~gli~hV~-~~s~~ 75 (109)
T cd04444 55 TLASMLMEENFLRPVG-VRSMG 75 (109)
T ss_pred HHHHHHHhCCchhhHH-HHhhh
Confidence 4899999999999995 33454
No 81
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=35.17 E-value=20 Score=34.64 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=19.4
Q ss_pred ChhhhcccCCcceeccCC-CCccCCCC
Q psy18037 1 MIAQALFDSEYIKCISGP-GSGAGDSK 26 (1390)
Q Consensus 1 ~i~qal~~~~~~~~v~~~-~~f~~d~~ 26 (1390)
.|||.|++.|||++|.++ ..|. |++
T Consensus 52 ~~~~~ll~~gli~~V~~~~~~~~-~~~ 77 (88)
T cd04450 52 EIAALFVKYGLITPVSDHRSLLK-PDE 77 (88)
T ss_pred HHHHHHHHCCCEEEecCCccccc-CCC
Confidence 389999999999999544 4466 654
No 82
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=33.59 E-value=88 Score=35.46 Aligned_cols=52 Identities=27% Similarity=0.371 Sum_probs=37.8
Q ss_pred HHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccC--hh----HHHHHHHHhCCe
Q psy18037 250 VARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVK--TT----VLERIARCTRAD 301 (1390)
Q Consensus 250 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK--~~----~LeRIAr~TgA~ 301 (1390)
+++|++++||+||+......-..+.|.+.+..++.... .. .++.+++.+|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 45788999999999888776566677887767666653 33 467788887743
No 83
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=33.30 E-value=21 Score=34.35 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.2
Q ss_pred hhhhcccCCcceeccCCCCccCCC
Q psy18037 2 IAQALFDSEYIKCISGPGSGAGDS 25 (1390)
Q Consensus 2 i~qal~~~~~~~~v~~~~~f~~d~ 25 (1390)
+||.|++.|+|..|.++..|. |.
T Consensus 55 ~g~~Ll~~G~i~HV~~~h~F~-d~ 77 (84)
T cd04438 55 YASSLLKLGYIRHTVNKITFS-EQ 77 (84)
T ss_pred HHHHHHHCCcEEecCCCcccc-CC
Confidence 799999999999998899998 75
No 84
>PLN02667 inositol polyphosphate multikinase
Probab=33.17 E-value=80 Score=37.27 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=46.5
Q ss_pred ecCCceEEeccC-----HHHHHHHHHhhHHHHHHHhhhccCCCCceeeeeeeeEEEEEccCCCCceEEEEEEeccCCCCC
Q psy18037 1277 TKDDRFILKEMS-----RLEMDSFLTFAPNYYNYVKNCFENSSPTLLCKIFGVFRVICQNNNSKTRSNLLVMENLFHSRN 1351 (1390)
Q Consensus 1277 T~D~rfiiKtis-----~~E~~~fl~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~i~~~~~~~~~k~~~iVMeNlf~~~~ 1351 (1390)
+.|+..|+|-+. ..|+++...+... ........-++++++|...+...+. ..+||||||-++-.
T Consensus 23 ~~~~g~~~Kp~~~~~rg~rE~~FY~~~~~~------~~~~~~L~~~~P~y~G~~~~~~~~~-----~~~i~LeDLt~g~~ 91 (286)
T PLN02667 23 VDDSGRFYKPLQDDSRGEREAAFYESFSSD------TRVPDHIRRFFPVFHGTQLVEASDG-----SGLLVLEDLLAGYT 91 (286)
T ss_pred EcCCCcEEeccCCcccchHHHHHHHHHhcc------ccchHHHHhhCcccceeEeeccCCC-----ceeEEehHHhcCCC
Confidence 347778899998 6888776655411 0000012367899999988766443 25799999988753
Q ss_pred ceeEEEec
Q psy18037 1352 IKLRFDLK 1359 (1390)
Q Consensus 1352 i~~~yDLK 1359 (1390)
-=-+-|||
T Consensus 92 ~PcVlDlK 99 (286)
T PLN02667 92 KPCVMDVK 99 (286)
T ss_pred CCeEEEEE
Confidence 33356777
No 85
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=32.20 E-value=1e+02 Score=34.19 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=39.0
Q ss_pred HHHHhcCCCEEEecCCc-cHHHHHHHHHcCCEEEEccCh-------hHHHHHHHHhCCe
Q psy18037 251 ARISALKPDIVLVQRNV-ARLAQESLQQLGITLVLNVKT-------TVLERIARCTRAD 301 (1390)
Q Consensus 251 ~rI~~~~pnVVlv~k~V-s~~A~~~L~~~GI~vv~nVK~-------~~LeRIAr~TgA~ 301 (1390)
++|++++||+||..... ..-...-+.+.||.++.--.. ..++.|++++|.+
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 67889999999999888 777778888999997754332 3578899999865
No 86
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=31.07 E-value=88 Score=35.92 Aligned_cols=50 Identities=34% Similarity=0.488 Sum_probs=34.4
Q ss_pred HHHHHhcCCCEEEecCCc-cHHHHHHHHHcCCEEEEccCh-------hHHHHHHHHhCC
Q psy18037 250 VARISALKPDIVLVQRNV-ARLAQESLQQLGITLVLNVKT-------TVLERIARCTRA 300 (1390)
Q Consensus 250 V~rI~~~~pnVVlv~k~V-s~~A~~~L~~~GI~vv~nVK~-------~~LeRIAr~TgA 300 (1390)
+++|++++|||||+..+. ..-..+.|.+.||.++.- .. ..++.+++.+|.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~-~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWV-DATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEe-CCCCHHHHHHHHHHHHHHcCC
Confidence 567889999999986542 345667899999997653 22 234566666663
No 87
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=28.33 E-value=1.4e+02 Score=29.21 Aligned_cols=69 Identities=13% Similarity=0.240 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCEEEec-------CCccHHHHHHHHHcCCEEE-Ecc--ChhHHHHHHHHhCCeEeeecccccCCccccc
Q psy18037 248 NVVARISALKPDIVLVQ-------RNVARLAQESLQQLGITLV-LNV--KTTVLERIARCTRADLVYSVDVLLNQIHLGT 317 (1390)
Q Consensus 248 ~~V~rI~~~~pnVVlv~-------k~Vs~~A~~~L~~~GI~vv-~nV--K~~~LeRIAr~TgA~Ii~Sid~~l~~~~LG~ 317 (1390)
..|+++++.++-||++. -.-+..|.++|.++||... .+| .+...+.+.+.+|..-++.+- +....+|-
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~g~~iGG 80 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VKGEFVGG 80 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--ECCEEEeC
Confidence 56788888887777764 3446789999999999733 344 344556777888877666654 33344444
Q ss_pred c
Q psy18037 318 C 318 (1390)
Q Consensus 318 c 318 (1390)
|
T Consensus 81 ~ 81 (97)
T TIGR00365 81 C 81 (97)
T ss_pred h
Confidence 4
No 88
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.96 E-value=1.2e+02 Score=34.73 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=34.8
Q ss_pred HHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccC-------hhHHHHHHHHhCC
Q psy18037 250 VARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVK-------TTVLERIARCTRA 300 (1390)
Q Consensus 250 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK-------~~~LeRIAr~TgA 300 (1390)
+++|++++||||++...-.....+++..++|.++.--. ...++.+++++|-
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~ 122 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGK 122 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCc
Confidence 56788999999998766555666666677776554211 1247778888874
No 89
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.81 E-value=68 Score=34.52 Aligned_cols=50 Identities=30% Similarity=0.370 Sum_probs=34.0
Q ss_pred HHHHHhcCCCEEEecCCccHH-HHHHHHHcCCEEE-Ecc----Ch--hHHHHHHHHhC
Q psy18037 250 VARISALKPDIVLVQRNVARL-AQESLQQLGITLV-LNV----KT--TVLERIARCTR 299 (1390)
Q Consensus 250 V~rI~~~~pnVVlv~k~Vs~~-A~~~L~~~GI~vv-~nV----K~--~~LeRIAr~Tg 299 (1390)
+++|++++|||||.......- ..+.|.+.||.++ ... .. ..++.+++.+|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 678999999999987665553 7788999998543 322 11 23555666665
No 90
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=27.14 E-value=28 Score=37.26 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=19.2
Q ss_pred cccccCCCCCCceeeecCCceEEec
Q psy18037 1262 RWEARGGKSGSNFCKTKDDRFILKE 1286 (1390)
Q Consensus 1262 ~~~~~gGKSgs~F~~T~D~rfiiKt 1286 (1390)
...-..|+-+++||+|.|.||||=.
T Consensus 130 S~GDt~GRRaALFYRtSdEr~ill~ 154 (230)
T PF12226_consen 130 SMGDTTGRRAALFYRTSDERYILLF 154 (230)
T ss_dssp EEEETT--EEEEEEETTTTEEEEEE
T ss_pred eecCCCCceEEEEEeccCceEEEEE
Confidence 3456789999999999999999843
No 91
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=26.98 E-value=78 Score=31.34 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=26.8
Q ss_pred HHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEE
Q psy18037 250 VARISALKPDIVLVQRNVARLAQESLQQLGITLVL 284 (1390)
Q Consensus 250 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~ 284 (1390)
++.|++++|||||+..+......+.|.+.||.++.
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~ 88 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVV 88 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEEE
Confidence 34677889999999887776667788888865543
No 92
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.64 E-value=1.1e+02 Score=36.25 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=36.7
Q ss_pred HHHHHhcCCCEEEecCCcc-----HHHHHHHHHcCCEEEEc-c-------ChhHHHHHHHHhCC
Q psy18037 250 VARISALKPDIVLVQRNVA-----RLAQESLQQLGITLVLN-V-------KTTVLERIARCTRA 300 (1390)
Q Consensus 250 V~rI~~~~pnVVlv~k~Vs-----~~A~~~L~~~GI~vv~n-V-------K~~~LeRIAr~TgA 300 (1390)
+++|++++||+||...... .-+.+.|.+.||.++.- . -...++.+++.+|.
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~ 147 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGR 147 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCC
Confidence 5678999999999875542 34667899999886542 1 13357888888874
No 93
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=25.13 E-value=2.2e+02 Score=33.90 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCEEEEccChhHHHHHHHHhCCeEe
Q psy18037 247 RNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLV 303 (1390)
Q Consensus 247 ~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK~~~LeRIAr~TgA~Ii 303 (1390)
...++-+++.+|.+|.+..+...-..+.|.++|+.++-.|..-..-+.+.-.|+++|
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 356777788999999988887776778899999999988877666666666688776
No 94
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.65 E-value=1.2e+02 Score=34.21 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=31.7
Q ss_pred HHHHHhcCCCEEEecCCccH--HHHHHHHHcCCEEEEccCh-------hHHHHHHHHhCC
Q psy18037 250 VARISALKPDIVLVQRNVAR--LAQESLQQLGITLVLNVKT-------TVLERIARCTRA 300 (1390)
Q Consensus 250 V~rI~~~~pnVVlv~k~Vs~--~A~~~L~~~GI~vv~nVK~-------~~LeRIAr~TgA 300 (1390)
+++|++++||+||....... ...++....||.++.--.. ..++.+++.+|-
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 45788999999999766654 3333334488886543221 125566666653
No 95
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=23.71 E-value=2.6e+02 Score=28.53 Aligned_cols=49 Identities=12% Similarity=0.212 Sum_probs=42.8
Q ss_pred HHhcCCCEEEecCCc------cHHHHHHHHHcCCEEEEccChhHHHHHHHHhCCe
Q psy18037 253 ISALKPDIVLVQRNV------ARLAQESLQQLGITLVLNVKTTVLERIARCTRAD 301 (1390)
Q Consensus 253 I~~~~pnVVlv~k~V------s~~A~~~L~~~GI~vv~nVK~~~LeRIAr~TgA~ 301 (1390)
+...+|.+|+|+.|+ ++-|.++|.+.|+-|+.---+..++|.-..-|+.
T Consensus 57 ~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 57 LLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred HHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 445899999999886 6789999999999999999999999998888864
No 96
>KOG2150|consensus
Probab=23.58 E-value=1.6e+02 Score=37.63 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHhCCcchhc
Q psy18037 799 GLFEEVKKWSLM---GQEVFSIVLEKLHTNQTDATMNTLQPLLVKDQANLKQKVDDIQMKLTDPDVMN 863 (1390)
Q Consensus 799 ~~~~e~~~~~~k---~~~~f~sv~~rL~~l~~d~~~~~~~~~l~~e~~e~k~kieei~~~L~s~~~~~ 863 (1390)
.|+.||..++.| |.++|++|.+|+.+-.....-..++..|++|+--|++.-++|+.++.++.+..
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKD 72 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKD 72 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 467788877765 56799999999998874443366667777888887777788888888766544
No 97
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=22.00 E-value=2.2e+02 Score=27.92 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=27.5
Q ss_pred cCCCEEEecCCccHHHHHHHHHcCCEEEEccC
Q psy18037 256 LKPDIVLVQRNVARLAQESLQQLGITLVLNVK 287 (1390)
Q Consensus 256 ~~pnVVlv~k~Vs~~A~~~L~~~GI~vv~nVK 287 (1390)
.++++||| .+|..-|...|.++||.++.-..
T Consensus 60 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYC-AAIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEE-hhcChhHHHHHHHcCCEEEEcCC
Confidence 48999988 78999999999999999987665
No 98
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=21.73 E-value=2.4e+02 Score=33.88 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCCEEEecCCcc-HHHHHHHHHcCCEEEEccChhHHHHHHHHhCCeEe
Q psy18037 246 LRNVVARISALKPDIVLVQRNVA-RLAQESLQQLGITLVLNVKTTVLERIARCTRADLV 303 (1390)
Q Consensus 246 L~~~V~rI~~~~pnVVlv~k~Vs-~~A~~~L~~~GI~vv~nVK~~~LeRIAr~TgA~Ii 303 (1390)
+...++.+.+.+|++|.+.-+.. ....+.|.++||.++..|..-.--+.+.-.|+|++
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~i 160 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAI 160 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEE
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEE
Confidence 66778888999999999998888 77788899999999999987766677777787665
No 99
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=21.66 E-value=4.4e+02 Score=32.24 Aligned_cols=68 Identities=16% Similarity=-0.015 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCccHHHHHHHHHcCCE-EEEccChhHHHHHHHHhC
Q psy18037 232 LLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGIT-LVLNVKTTVLERIARCTR 299 (1390)
Q Consensus 232 ~~sle~ii~qE~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~GI~-vv~nVK~~~LeRIAr~Tg 299 (1390)
+.+-+.+.+--.-|++++++.|.+.|.-+++.-.|-.....+.|.+.|.. ++......+|..+.+..|
T Consensus 243 ~lsp~~f~ef~~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~~~g 311 (378)
T cd03308 243 FLRPKQFEKFYWPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPKGKTVGLFEYGDPKKVKEKLG 311 (378)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHHHhC
Confidence 44444555556789999999999887767776666666566777776654 333333345555555544
No 100
>PF12846 AAA_10: AAA-like domain
Probab=20.50 E-value=2.1e+02 Score=32.74 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEecCCccHHH-----HHHHHHcCCEEEEccChhHHHHHHHHhCC
Q psy18037 243 TEYLRNVVARISALKPDIVLVQRNVARLA-----QESLQQLGITLVLNVKTTVLERIARCTRA 300 (1390)
Q Consensus 243 ~eyL~~~V~rI~~~~pnVVlv~k~Vs~~A-----~~~L~~~GI~vv~nVK~~~LeRIAr~TgA 300 (1390)
.+++.+++.+..+.|..+++...+++++. ...+...+..++.++...+.+.+++..|-
T Consensus 239 ~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl 301 (304)
T PF12846_consen 239 AEFLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGL 301 (304)
T ss_pred hhhhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCc
Confidence 45777888899999999999999999999 89999999999999999999889998875
Done!