RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18037
(1390 letters)
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 341 bits (876), Expect = e-108
Identities = 140/261 (53%), Positives = 186/261 (71%), Gaps = 7/261 (2%)
Query: 131 NKLLQQLLIVESLS--MSWASVILPLAEKIIEEVKPD-QNIDSFDIRQYVQIKKVDGGTR 187
LL QLL E +S SW ++LPL K VKPD + D DIRQYV+IKK+ GG+
Sbjct: 1 RALLAQLLKDEGISNDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSP 60
Query: 188 NDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLR 247
+DS VV G+V +KNV+HK M + + NP+IL+LQ + YQRVE KLLSL+PVI+QE EYL+
Sbjct: 61 SDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLK 120
Query: 248 NVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVD 307
N+V+RI AL+PD++LV+++V+R+AQ+ L + GITLVLNVK +VLERI+RCT AD++ S+D
Sbjct: 121 NLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMD 180
Query: 308 VLLNQIHLGTCSRFSVKKLSDSN---KTLMFFEGCAFPHKGSTVILRGASRKELMKVKRV 364
LL LGTC F V+ + + KTLMFFEGC G T++LRG +EL KVKRV
Sbjct: 181 DLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCP-KELGCTILLRGGDLEELKKVKRV 239
Query: 365 TSFMIYVLYNWKLESSLLMDE 385
FM++ Y+ KLE+S L DE
Sbjct: 240 VEFMVFAAYHLKLETSFLADE 260
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 158 bits (401), Expect = 8e-44
Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 41/237 (17%)
Query: 142 SLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKN 201
S SW + L + +V PD +D ++++K+ GG+ DS +V G+V K
Sbjct: 14 SKLSSWDDFLGKLVVDAVLKVGPDNRMD---DLGVIKVEKIPGGSLEDSELVVGVVFDKG 70
Query: 202 VSHKSMLTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIV 261
+ M L N KIL+L C + Y +V
Sbjct: 71 YASPYMPKRLENAKILLLDCPLEY----------------------------------VV 96
Query: 262 LVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRF 321
+ ++ + LA L + GI V VK LERIAR T A +V S++ L + LGT
Sbjct: 97 IAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPE-DLGTAELV 155
Query: 322 SVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVLYNWKLE 378
K+ + + L F EGC K +T++LRGA+ EL +VKR + + E
Sbjct: 156 EETKIGE--EKLTFIEGCKGG-KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209
>gnl|CDD|238081 cd00139, PIPKc, Phosphatidylinositol phosphate kinases (PIPK)
catalyze the phosphorylation of phosphatidylinositol
phosphate on the fourth or fifth hydroxyl of the inositol
ring, to form phosphatidylinositol bisphosphate. CD
alignment includes type II phosphatidylinositol
phosphate kinases (PIPKII-beta), type I andII PIPK
(-alpha, -beta, and -gamma) kinases and related yeast
Fab1p and Mss4p kinases. Signaling by phosphorylated
species of phosphatidylinositol regulates secretion,
vesicular trafficking, membrane translocation, cell
adhesion, chemotaxis, DNA synthesis, and cell cycling.
The catalytic core domains of PIPKs are structurally
similar to PI3K, PI4K, and cAMP-dependent protein kinases
(PKA), the dimerization region is a unique feature of the
PIPKs.
Length = 313
Score = 158 bits (403), Expect = 8e-43
Identities = 64/194 (32%), Positives = 82/194 (42%), Gaps = 49/194 (25%)
Query: 1177 FSDTAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDD 1236
+A+F K Y ++F LR+ E ++RSL R WE G
Sbjct: 50 PPHLSADFKFKDYCPEVFRALRELFGI-DEADYLRSLCRSPLWELSSG------------ 96
Query: 1237 RFILKEMSRLEKGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFL 1296
GKSGS F KT DDRFI+K +S E++S L
Sbjct: 97 -------------------------------GKSGSFFYKTLDDRFIIKTVSHSEIESLL 125
Query: 1297 TFAPNYYNYVKNCFENSSPTLLCKIFGVFRVICQNNNSKTRSNLLVMENLF-HSRNIKLR 1355
F PNYY Y+ TLL K FG++RV ++ K LVMENLF I +
Sbjct: 126 KFLPNYYEYITQNP---QNTLLPKFFGLYRVKVKSGTGKKVD-FLVMENLFYSRLKIHRK 181
Query: 1356 FDLKGSLRNRLVDT 1369
+DLKGS RNR
Sbjct: 182 YDLKGSTRNREASK 195
>gnl|CDD|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases.
Length = 342
Score = 147 bits (373), Expect = 1e-38
Identities = 58/203 (28%), Positives = 84/203 (41%), Gaps = 54/203 (26%)
Query: 1171 PHIDIKFSDTAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNF 1230
H+++ S +A+F K Y ++F LR+
Sbjct: 17 GHLELTPSHGSADFKFKDYCPEVFRNLRELFGI--------------------------- 49
Query: 1231 CKTKDDRFILKEMSRLEKGEESFIRSLSRC-IRWEARGGKSGSNFCKTKDDRFILKEMSR 1289
++RSL R + GGKSGS F + DDRFI+K +S+
Sbjct: 50 ------------------DPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSK 91
Query: 1290 LEMDSFLTFAPNYYNYVKNCFENSSPTLLCKIFGVFRVICQNNNSKTR-SNLLVMENLFH 1348
E+ S L PNYY ++ TLL K FG++RV + + LVMENLF+
Sbjct: 92 SEIKSLLPMLPNYYEHIVQN----PNTLLPKFFGLYRV--KVKGGTEKKIYFLVMENLFY 145
Query: 1349 S-RNIKLRFDLKGSLRNRLVDTS 1370
S + ++DLKGS R R D
Sbjct: 146 SDLKVHRKYDLKGSTRGREADKK 168
>gnl|CDD|216538 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-Kinase. This
family contains a region from the common kinase core
found in the type I phosphatidylinositol-4-phosphate
5-kinase (PIP5K) family as described in. The family
consists of various type I, II and III PIP5K enzymes.
PIP5K catalyzes the formation of
phosphoinositol-4,5-bisphosphate via the phosphorylation
of phosphatidylinositol-4-phosphate a precursor in the
phosphinositide signaling pathway.
Length = 255
Score = 138 bits (351), Expect = 1e-36
Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 1255 RSLSR--CIRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNCFEN 1312
SL + + GGKSGS F K++DDRFI+K + + E+ L F P Y+ +VK
Sbjct: 1 MSLCGLDTLSELSSGGKSGSFFYKSRDDRFIIKTIKKSEVKFLLKFLPAYFEHVKENPN- 59
Query: 1313 SSPTLLCKIFGVFRVICQNNNSKTRSNLLVMENLFHS-RNIKLRFDLKGSLRNRLVDTS 1370
TLL K +G++RV + K +VMENLF+S R+I R+DLKGS R V
Sbjct: 60 ---TLLPKFYGLYRVKKKGGEKKIY--FVVMENLFYSPRDIHRRYDLKGSTVGRSVSPK 113
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 127 bits (320), Expect = 2e-30
Identities = 90/287 (31%), Positives = 145/287 (50%), Gaps = 27/287 (9%)
Query: 147 WASVILPLAEKIIEEVKPD--QNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH 204
W+ ++ LA + VK D DI++Y +++K+ GG DS V+ G++ +K+V+H
Sbjct: 163 WSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTH 222
Query: 205 KSMLTALNNPKILILQCAIVYQRVEG-------KLLSLEPVIMQETEYLRNVVARISALK 257
M + NP+I++L C + Y++ E K ++ E EY++ + I A+K
Sbjct: 223 PKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVK 282
Query: 258 PDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGT 317
PD+V+ ++ V+ LAQ L + I+ + V+ T RIAR A +V + L + +GT
Sbjct: 283 PDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEE-LRESDVGT 341
Query: 318 -CSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVLYNWK 376
C F VKK+ D T FF C P K T++LRGAS+ L +++R + V N
Sbjct: 342 GCGLFEVKKIGDEYFT--FFTECKDP-KACTILLRGASKDVLNEIERNLQDAMAVARNVL 398
Query: 377 LESSLL-------MDEQAYVIQTKKP---ILQSPSDSVAD---IIPK 410
LE LL M Y+ + + Q P +VAD IIP+
Sbjct: 399 LEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPR 445
>gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal
transduction mechanisms].
Length = 612
Score = 118 bits (296), Expect = 4e-27
Identities = 80/250 (32%), Positives = 123/250 (49%), Gaps = 17/250 (6%)
Query: 1130 VVVYEQEPSSIISYALSSFDYQYKLEELKAAHEIETNECKIPHIDIKFSDTAANFSVKMY 1189
V++ E EPSS+I++ LS+ DY+ K+ L+ +E + + ++ S M
Sbjct: 246 VIIREDEPSSLIAFCLSTSDYRNKMMRLR--DSETMDERLLNGMPLEGGHRNPQESYNML 303
Query: 1190 FADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEKG 1249
R EE I+ + + G + + F +E+ L
Sbjct: 304 TGIRVTLSRI------EEIMIKKTDTHLNEQFEEGLYEFSCKDYFPEVF--RELRALCGC 355
Query: 1250 EESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNC 1309
+E+ + LSR I WE+ GGKSGS F T+D +FI+K +S E + F P + Y +
Sbjct: 356 DEALVSLLSRYILWESNGGKSGSFFLFTRDYKFIIKTISHSE---HICFRPMIFEYYVHV 412
Query: 1310 FENSSPTLLCKIFGVFRVICQNNNSKTRSN---LLVMENLFHSRNIKLRFDLKGSLRNRL 1366
N TLLCKIFG +RV +++ S ++S +VMENLF+ I FDLKGS+RNR
Sbjct: 413 LFNPL-TLLCKIFGFYRVKSRSSISSSKSRKIYFIVMENLFYPHGIHRIFDLKGSMRNRH 471
Query: 1367 VDTSLDSMDS 1376
V+ + SM
Sbjct: 472 VERTGKSMSV 481
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 110 bits (276), Expect = 5e-25
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 8/191 (4%)
Query: 177 VQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEGK----L 232
+ + K++GG+ DS ++ GIV K M L NPKIL+L C + Y++ E
Sbjct: 159 IGVIKIEGGSLEDSELIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKTEKVIISTA 218
Query: 233 LSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLE 292
LE ++ E + L ++ +I ++V++Q+ + LA L + GI + VK LE
Sbjct: 219 EELERLLEAEEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRVKKEDLE 278
Query: 293 RIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRG 352
R+A+ T A +V S+D L LG+ + +++ + F EGC K +T++LRG
Sbjct: 279 RLAKATGATVVSSLDDLEPDE-LGSAGKVEEREIGE--DKTTFIEGCLSG-KVATILLRG 334
Query: 353 ASRKELMKVKR 363
A+ EL +++R
Sbjct: 335 ATDHELDELER 345
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 100 bits (253), Expect = 5e-22
Identities = 57/218 (26%), Positives = 88/218 (40%), Gaps = 41/218 (18%)
Query: 146 SWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHK 205
+ L + +V + ++++K GG+ DS +V G+V K
Sbjct: 154 GGDDFLGELVVDAVLKVGKENGDVDLG---VIRVEKKKGGSLEDSELVVGMVFDKGYLSP 210
Query: 206 SMLTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQR 265
M L N KIL+L C LE V+ + ++
Sbjct: 211 YMPKRLENAKILLLDC------------KLEYVV----------------------IAEK 236
Query: 266 NVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKK 325
+ A L +LGI V V+ LERIA+ T A +V ++ L + LGT K
Sbjct: 237 GIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPE-DLGTAGLVEETK 295
Query: 326 LSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
+ D T F EGC K +T++LRGA+ EL + +R
Sbjct: 296 IGDEKYT--FIEGCKGG-KVATILLRGATEVELDEAER 330
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 99.3 bits (248), Expect = 2e-21
Identities = 76/283 (26%), Positives = 123/283 (43%), Gaps = 76/283 (26%)
Query: 102 IIQAYRRD-------------PIRPNNAKA-----DAALTDKFESHRNKLLQQLLIVESL 143
II+AYR+ P+ N+ + + KF S
Sbjct: 117 IIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSR-------------- 162
Query: 144 SMSWASVILPLAEKIIEEVKPDQN--IDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKN 201
W+ ++ LA ++ V ++N DI++Y +++K+ GG DS V+ G++ +K+
Sbjct: 163 ---WSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKD 219
Query: 202 VSHKSMLTALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIV 261
V+H M + NP+I++L C + EYL V
Sbjct: 220 VTHPKMRRRIENPRIVLLDCPL--------------------EYL--------------V 245
Query: 262 LVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGT-CSR 320
+ ++ V+ LAQ L + GIT + V+ T RIAR A +V + L + +GT
Sbjct: 246 ITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPE-ELTESDVGTGAGL 304
Query: 321 FSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
F VKK+ D T F C P K T++LRGAS+ L +V+R
Sbjct: 305 FEVKKIGDEYFT--FITECKDP-KACTILLRGASKDVLNEVER 344
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 97.3 bits (243), Expect = 1e-20
Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 30/245 (12%)
Query: 118 ADAALTDKF-ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQY 176
A +LT K E+ ++KL L+V+ A + E + + + D
Sbjct: 150 AKTSLTGKGAEAAKDKLAD--LVVD-------------AVLQVAEKRDGKYVVDLD---N 191
Query: 177 VQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEGKL-LS- 234
++I+K GG+ +D+ ++ GIV K V H M + N KI +L + ++ E +
Sbjct: 192 IKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDAKIRI 251
Query: 235 -----LEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTT 289
L+ + QE L+ +V +I+ ++V Q+ + LAQ L + GI V VK +
Sbjct: 252 TSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKS 311
Query: 290 VLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVI 349
+E++AR T A +V ++D L LG +K+ D F EGC P K T++
Sbjct: 312 DMEKLARATGAKIVTNIDD-LTPEDLGEAELVEERKVGDDKMV--FVEGCKNP-KAVTIL 367
Query: 350 LRGAS 354
LRG +
Sbjct: 368 LRGGT 372
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 88.6 bits (220), Expect = 7e-18
Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 30/246 (12%)
Query: 118 ADAALTDKF--ESHRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQ 175
A+ +LT K E ++KL L+VE A K + E++ D D+
Sbjct: 151 AETSLTSKASAEVAKDKLAN--LVVE-------------AVKQVAELRGDGKYY-VDL-D 193
Query: 176 YVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEGKL-LS 234
++I K GG+ +D+ +V GIV K V H M + N KI +L + ++ E +
Sbjct: 194 NIKIVKKTGGSIDDTELVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKTEIDAEIR 253
Query: 235 LEPV------IMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKT 288
+ + QE L+ +V +I+ ++V+ Q+ + +AQ L + GI V VK
Sbjct: 254 ITDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVAQHYLAKAGILAVRRVKK 313
Query: 289 TVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTV 348
+ +E++AR T A +V S+D + + LG +K+ + F EGC P K T+
Sbjct: 314 SDIEKLARATGARIVSSIDE-ITESDLGYAGLVEERKVGEDKMV--FVEGCKNP-KAVTI 369
Query: 349 ILRGAS 354
+LRG +
Sbjct: 370 LLRGGT 375
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 81.9 bits (203), Expect = 9e-16
Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 29/229 (12%)
Query: 153 PLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSK-NVSHKSM-LTA 210
L + +E+V +Q + I K GG+ + VV G+V K +S M
Sbjct: 161 ELVVEAVEKVGKEQ-----SDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKR 215
Query: 211 LNNPKILILQCAIVYQRVEGKLLSLEPVI-----MQ------ETEYLRNVVARISALKPD 259
L NPKIL+L + ++ E L LE VI + E E L +V I +
Sbjct: 216 LENPKILLLDKKLEIKKPE---LPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGAN 272
Query: 260 IVLV-QRNVARLAQESLQQLGITLVLNVKTT-VLERIARCTRADLVYSVDVLLNQIHLGT 317
+V+V + LA+ L+ + I VK + ER+A+ A +V + L I LG
Sbjct: 273 VVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLK-DLTTIVLGE 331
Query: 318 --CSRFSVKKLSDSNKTLMFFEGCAFPHKGS-TVILRGASRKELMKVKR 363
K D + + G T+++RGA+ EL + +R
Sbjct: 332 GAAGLVEETKTGDYDME--KLQERKAKAGGVATILVRGATEVELDEKER 378
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 72.9 bits (179), Expect = 8e-13
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 15/118 (12%)
Query: 1268 GKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNCFENSSPTLLCKIFGVFRV 1327
GKSGS F ++DDRF++K + + E+ L P+Y+++VK +EN TL+ K FG+ R
Sbjct: 445 GKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPDYHHHVKT-YEN---TLITKFFGLHR- 499
Query: 1328 ICQNNNSKTRSNLLVMENLFHSR-NIKLRFDLKGSLRNRLVD-------TSLDSMDSD 1377
I ++ K R +VM N+F + I RFDLKGS R D T+L +D +
Sbjct: 500 IKPSSGQKFR--FVVMGNMFCTELRIHRRFDLKGSSLGRSADKVEIDENTTLKDLDLN 555
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 57.7 bits (140), Expect = 3e-08
Identities = 48/221 (21%), Positives = 107/221 (48%), Gaps = 17/221 (7%)
Query: 146 SWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHK 205
++S++ P+A + +V + D++ +KK+ GGT D+ +V G+V ++ S K
Sbjct: 154 QYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKL-GGTIEDTELVDGLVFTQKASKK 212
Query: 206 S-MLTALNNPKILILQCAIVYQR--VEGKLL-----SLEPVIMQETEYLRNVVARISALK 257
+ T + KI ++Q + + ++ ++ ++ ++ +E +Y+ N+ +I
Sbjct: 213 AGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSG 272
Query: 258 PDIVLVQRNVAR-----LAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQ 312
+++L+Q+++ R LA L +L I +V +++ +E I + V S+D +
Sbjct: 273 CNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASID-HFTE 331
Query: 313 IHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGA 353
LG+ L D ++ G P K T+++RG+
Sbjct: 332 DKLGSADLVEEVSLGDGK--IVKITGVKNPGKTVTILVRGS 370
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 57.5 bits (139), Expect = 4e-08
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 18/197 (9%)
Query: 179 IKKVDGGTRNDSFVVSGIVHSKNVS---HKSMLTALNNPKILILQCAIVYQ--------R 227
+KKV GG DS +V+G+ K S + NPKIL+L + + R
Sbjct: 195 VKKVQGGALEDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKAEKDNAEIR 254
Query: 228 VEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVK 287
VE + + ++ E + + +I +IVL + + LA + I V
Sbjct: 255 VED-VEDYQAIVDAEWAIIFEKLRKIVESGANIVLSKLPIGDLATQYFADHNIFCAGRVS 313
Query: 288 TTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPH-KGS 346
++R+ + + + L LGTC+ F +++ ++ F GC PH K
Sbjct: 314 AEDMKRVIKACGGSIQSTTSD-LEADVLGTCALFEERQI--GSERYNLFTGC--PHAKTC 368
Query: 347 TVILRGASRKELMKVKR 363
T+ILRG + + + + +R
Sbjct: 369 TIILRGGAEQFIEEAER 385
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 57.1 bits (138), Expect = 5e-08
Identities = 52/226 (23%), Positives = 110/226 (48%), Gaps = 25/226 (11%)
Query: 147 WASVILPLAE----KIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNV 202
++S++ PLA K+I+ + +N+D DI+ +KK+ GGT +D+ ++ G+V ++
Sbjct: 156 YSSLLAPLAVDAVLKVIDP-ENAKNVDLNDIKV---VKKL-GGTIDDTELIEGLVFTQKA 210
Query: 203 SH-KSMLTALNNPKILILQCAIV-------YQRVEGKLLSLEPVIMQETEYLRNVVARIS 254
S T + KI ++Q I Q + ++ V+ +E Y+ N+V +I
Sbjct: 211 SKSAGGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRVLKEERAYILNIVKKIK 270
Query: 255 ALKPDIVLVQRNVAR-----LAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVL 309
+++L+Q+++ R LA L ++ I +V +++ +E I + + S+D
Sbjct: 271 KTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEIEFICKTIGCKPIASID-H 329
Query: 310 LNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASR 355
LG+ V+++ ++ G K TV++RG+++
Sbjct: 330 FTADKLGSAE--LVEEVDSDGGKIIKITGIQNAGKTVTVVVRGSNK 373
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 55.0 bits (133), Expect = 2e-07
Identities = 69/289 (23%), Positives = 119/289 (41%), Gaps = 49/289 (16%)
Query: 100 QKIIQAYRRDPIRPNNAKADAALTDKFESHRN---KLLQQLLIVESLSMSWASVILP--- 153
Q II+ YR A A AL H + + LL + ++S S IL
Sbjct: 114 QTIIEGYRM-----ATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLS--SKILTQDK 166
Query: 154 -----LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSML 208
LA + +K N+D +QI K GG+ DS++ G + K + +
Sbjct: 167 EHFAELAVDAVLRLKGSGNLD------AIQIIKKLGGSLKDSYLDEGFLLDKKIG-VNQP 219
Query: 209 TALNNPKILILQCAI------VYQ---RVE--GKLLSLEPVIMQETEYLRNVVARISALK 257
+ N KILI + ++ RV+ K+ +E E E ++N V +I
Sbjct: 220 KRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIE---EAEKEKMKNKVEKILKHG 276
Query: 258 PDIVLVQRN-VARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLG 316
+ + R + ++ GI + + +ER+A T ++ + D + LG
Sbjct: 277 IN-CFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDH-PELVKLG 334
Query: 317 TCSRFSVKKLSDSNKTLMFFEGCAFPHKG--STVILRGASRKELMKVKR 363
TC ++++ L+ F G A G T++LRGAS++ L + +R
Sbjct: 335 TCK--LIEEIMIGEDKLIRFSGVA---AGEACTIVLRGASQQILDEAER 378
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 54.0 bits (130), Expect = 4e-07
Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 15/189 (7%)
Query: 177 VQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILIL-------QCAIVYQRVE 229
V I K G + +S++V G + + + M + KI L + A+ Q V
Sbjct: 191 VNILKAHGKSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKAKMALGVQIVV 250
Query: 230 GKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTT 289
LE + +E + + + +I ++VL + + + + G V K
Sbjct: 251 DDPAKLEQIRQREADITKERIKKILDAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKE 310
Query: 290 VLERIARCTRADLVYSV-----DVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHK 344
L+RIA+ T LV ++ + + +LG ++++D + +G
Sbjct: 311 DLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVQERIADDE--CILIKGTK-KRS 367
Query: 345 GSTVILRGA 353
+++ILRGA
Sbjct: 368 SASIILRGA 376
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 51.9 bits (125), Expect = 2e-06
Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 17/191 (8%)
Query: 184 GGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCA-----------IVYQRVEGKL 232
GG D+ +V GIV K+ SH M + + KI IL C + VE
Sbjct: 207 GGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVE--- 263
Query: 233 LSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLE 292
+ + E +Y R +V ++ ++V+ Q A L Q G+ V V +E
Sbjct: 264 -DYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIE 322
Query: 293 RIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRG 352
IA T +V + L + LG + ++ EGC K T+ +RG
Sbjct: 323 LIAIATGGRIVPRFEDLSPE-KLGKAGLVREISFGTTKDKMLVIEGCP-NSKAVTIFIRG 380
Query: 353 ASRKELMKVKR 363
++ + + KR
Sbjct: 381 GNKMIIEEAKR 391
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 51.1 bits (123), Expect = 3e-06
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 19/191 (9%)
Query: 177 VQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEGKL---- 232
V I K G + +S++V+G + + + M T + N KI L Q+ + KL
Sbjct: 187 VNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLD--FNLQKTKMKLGVQV 244
Query: 233 -----LSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVK 287
LE + +E++ + + +I A ++VL + + + + G V VK
Sbjct: 245 VVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVK 304
Query: 288 TTVLERIARCTRADLVYSVDVL-----LNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFP 342
L RIA+ T A LV ++ L + +LG +++ D L+ +G
Sbjct: 305 KEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDE--LILIKGTK-K 361
Query: 343 HKGSTVILRGA 353
+++ILRGA
Sbjct: 362 RSSASIILRGA 372
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 50.8 bits (122), Expect = 4e-06
Identities = 73/285 (25%), Positives = 126/285 (44%), Gaps = 41/285 (14%)
Query: 100 QKIIQAYRRDPIRPNNAKADAALTDKFESHRN---KLLQQLLIVESLSMSWASVILP--- 153
Q II+ +R A AL + H + K + LL + ++S S +L
Sbjct: 126 QTIIEGWRMA-----LDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLS--SKLLTVEK 178
Query: 154 -----LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSML 208
LA + +K N+D Y+QI K GGT DS++ G + K +
Sbjct: 179 DHFAKLAVDAVLRLKGSGNLD------YIQIIKKPGGTLRDSYLEDGFILEKKIG-VGQP 231
Query: 209 TALNNPKILILQCAIVYQRVE--G---KLLSLEPV--IMQ-ETEYLRNVVARISALKPDI 260
L N KIL+ + +++ G K+ S+E V I E E ++N V +I A ++
Sbjct: 232 KRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNV 291
Query: 261 VLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSR 320
+ ++ + ++ + GI + + +ER+A A++V + D + LG C
Sbjct: 292 FINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEK-VKLGHCD- 349
Query: 321 FSVKKLSDSNKTLMFFEGCAFPHKG--STVILRGASRKELMKVKR 363
++++ L+ F GCA KG T++LRGAS L + +R
Sbjct: 350 -LIEEIMIGEDKLIRFSGCA---KGEACTIVLRGASTHILDEAER 390
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 48.8 bits (117), Expect = 1e-05
Identities = 37/194 (19%), Positives = 77/194 (39%), Gaps = 40/194 (20%)
Query: 162 VKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQC 221
V P+ NI +F++ +++ K+ GG+ DS VV G+V + + + K+ + C
Sbjct: 171 VLPE-NIGNFNV-DNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSC 226
Query: 222 AIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGIT 281
+ + ++++ +V LA + GI
Sbjct: 227 PF------------DIGV-------------------NVIVAGGSVGDLALHYCNKYGI- 254
Query: 282 LVLNVKTTV-LERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCA 340
+V+ + + L R+ R A + + + +G C V+++ D+ F
Sbjct: 255 MVIKINSKFELRRLCRTVGATPLPRLGAPTPE-EIGYCDSVYVEEIGDTKVV--VFRQNK 311
Query: 341 FPHKGSTVILRGAS 354
K +T++LRGA+
Sbjct: 312 EDSKIATIVLRGAT 325
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 47.9 bits (114), Expect = 3e-05
Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 17/191 (8%)
Query: 184 GGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILILQC-----------AIVYQRVEGKL 232
GG+ D+ ++ GI+ K+ SH M + + KI IL C + VE
Sbjct: 211 GGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVE--- 267
Query: 233 LSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLE 292
+ + E + + ++ I +IV+ Q A L Q + V V LE
Sbjct: 268 -EYKKLQKYEQQKFKEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGQELE 326
Query: 293 RIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRG 352
IA T +V L LG + ++ E C K T+ +RG
Sbjct: 327 LIAIATGGRIVPRFQELSKD-KLGKAGLVREISFGTTKDRMLVIEQCK-NSKAVTIFIRG 384
Query: 353 ASRKELMKVKR 363
++ + + KR
Sbjct: 385 GNKMIIEEAKR 395
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 46.9 bits (112), Expect = 7e-05
Identities = 56/264 (21%), Positives = 104/264 (39%), Gaps = 53/264 (20%)
Query: 122 LTDKFESHRNKLLQQL------LIVESLSMSWASVI-------LP--LAEKIIEEV---- 162
+T+ FE +NK L+ L + +++ SV L LA+++ E V
Sbjct: 113 ITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAV 172
Query: 163 ----KPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLTALNNPKILI 218
KPD+ ID V+I ++ + +D+ ++ G+V H M + N IL
Sbjct: 173 LAIYKPDEPIDLH----MVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILT 228
Query: 219 LQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQL 278
++ Y++ E S +V+ Q+ + + + L +
Sbjct: 229 CNVSLEYEKTEVN----------------------SGFFYSVVINQKGIDPPSLDMLAKE 266
Query: 279 GITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEG 338
GI + K +ER+ + SVD L + LG + L + T F EG
Sbjct: 267 GILALRRAKRRNMERLTLACGGVAMNSVDDLSPE-CLGYAGLVYERTLGEEKYT--FIEG 323
Query: 339 CAFPHKGSTVILRGASRKELMKVK 362
P K T++++G + + ++K
Sbjct: 324 VKNP-KSCTILIKGPNDHTITQIK 346
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 45.7 bits (109), Expect = 1e-04
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 26/190 (13%)
Query: 179 IKKVDGGTRNDSFVVSGIVHSKNVSH-------KSMLTALNNPKILILQCAIVYQ----- 226
IKKV GG+ DS +V+G+ K S+ K NPKIL+L + +
Sbjct: 193 IKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFK----NPKILLLNVELELKAEKDN 248
Query: 227 ---RVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLV 283
RVE + ++ E + + + + +I ++VL + + LA + I
Sbjct: 249 AEVRVED-PEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCA 307
Query: 284 LNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPH 343
V L+R+A+ T + +V + + LGTC F +++ + F GC P
Sbjct: 308 GRVPEEDLKRVAQATGGSIQTTVSNITDD-VLGTCGLFEERQV--GGERYNIFTGC--PK 362
Query: 344 -KGSTVILRG 352
K T+ILRG
Sbjct: 363 AKTCTIILRG 372
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 41.8 bits (98), Expect = 0.002
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 41/285 (14%)
Query: 100 QKIIQAYRRDPIRPNNAKADAALTDKFESHRN--KLLQQLLIVESLSMSWASVILP---- 153
Q II+ YR A DA ++ + K + L+ + ++S S IL
Sbjct: 114 QTIIEGYRL----ATKAALDALTKSAVDNSSDKTKFREDLINIARTTLS--SKILSQHKD 167
Query: 154 ----LAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLT 209
LA + +K N+++ +QI K+ GG +DSF+ G + +K + +
Sbjct: 168 HFAQLAVDAVLRLKGSTNLEA------IQIIKILGGKLSDSFLDEGFILAKKIGV-NQPK 220
Query: 210 ALNNPKILILQCAIVYQRVE-----------GKLLSLEPVIMQETEYLRNVVARISALKP 258
+ N KILI + +V+ KL LE E E ++ V +I
Sbjct: 221 RIENAKILIANTTMDTDKVKIFGSRVRVDSTAKLAELEKA---EREKMKEKVEKILKHGI 277
Query: 259 DIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTC 318
+ + ++ + ++ GI + + +ER+A T ++V + D + LG+C
Sbjct: 278 NCFINRQLIYNYPEQLFADAGIMSIEHADFEGVERLALVTGGEIVSTFDH-PELVKLGSC 336
Query: 319 SRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
++++ L+ F G + T++LRGA+++ L + +R
Sbjct: 337 DL--IEEIMIGEDKLLKFSGVKA-GEACTIVLRGATQQILDEAER 378
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 41.2 bits (97), Expect = 0.003
Identities = 45/225 (20%), Positives = 95/225 (42%), Gaps = 22/225 (9%)
Query: 150 VILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLT 209
+ L K V P N +F++ +++ K+ GG+ ++S V+ G+V ++ + +
Sbjct: 169 FLSQLVAKACSTVLPK-NPQNFNV-DNIRVVKIMGGSLSNSEVIKGMVFNREA--EGSVK 224
Query: 210 ALNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRN--------VVARISALKP--- 258
+ K+ + C + E K V++ E L N + A I A+
Sbjct: 225 RVKKAKVAVFSCPLDTATTETK----GTVLIHNAEELLNYSKGEENQIEAMIKAIADSGV 280
Query: 259 DIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTC 318
++++ +V +A L + GI ++ L R+ + A + + + LG
Sbjct: 281 NVIVTGGSVGDMALHYLNRYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPE-ELGYV 339
Query: 319 SRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
V ++ T+ F+ + ST+ILRG+++ L ++R
Sbjct: 340 DSVYVSEIGGDKVTV--FKQENGDSRISTIILRGSTKNLLDDIER 382
>gnl|CDD|238564 cd01144, BtuF, Cobalamin binding protein BtuF. These proteins have
been shown to function as initial receptors in ABC
transport of vitamin B12 (cobalamin) in eubacterial and
some archaeal species. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind the
metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence).
Length = 245
Score = 35.7 bits (83), Expect = 0.11
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 251 ARISALKPDIVLVQR--NVARLAQESLQQLGI-TLVLNVKTTVLERIARCTRA 300
R+ ALKPD+V+ NV + + L+ GI LV +T L+ I R
Sbjct: 51 ERVLALKPDLVIAWDDCNVCAVV-DQLRAAGIPVLVSEPQT--LDDILADIRR 100
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 34.9 bits (80), Expect = 0.39
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 999 VPRMKAILSQLLPTNVPSLPISNSLVEAQQHHTLALGCSVPVVHSSKSLLTDIVEGTPTT 1058
VP A+ +P PS S H S+ V S S L E P
Sbjct: 2968 VPGRVAVPRFRVPQPAPSREAPASSTPPLTGH------SLSRVSSWASSLALHEETDPPP 3021
Query: 1059 ETSTEYVFDSEESEESDVDHVDDSDT 1084
+ + ++ +++E+SD D + DSD+
Sbjct: 3022 VSLKQTLWPPDDTEDSDADSLFDSDS 3047
>gnl|CDD|115110 pfam06433, Me-amine-dh_H, Methylamine dehydrogenase heavy chain
(MADH). Methylamine dehydrogenase (EC:1.4.99.3) a
periplasmic quinoprotein found in several methyltrophic
bacteria. Induced when grown on methylamine as a carbon
source MADH catalyzes the oxidative deamination of
amines to there corresponding aldehydes. MADH is a
hetero- tetramer, comprised of two heavy chains (H) and
two light chains (L). The H-chain forms a beta-propeller
like structure.
Length = 342
Score = 34.0 bits (78), Expect = 0.54
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 288 TTVLERIARCTRADLVYSVDVLLNQ----IHLGTCSRFSV------KKLSDSNKTLMFFE 337
+TV RIAR R D V +D + I L RF V L+ NKTL+F++
Sbjct: 54 STVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMASLTPDNKTLLFYQ 113
Query: 338 GCAFPHKGSTVILRGASRKELMKV 361
P G V L G + +M V
Sbjct: 114 FSPSPAVG-VVDLEGKAFVRMMDV 136
>gnl|CDD|177552 PHA03178, PHA03178, UL43 envelope protein; Provisional.
Length = 403
Score = 34.1 bits (78), Expect = 0.61
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 565 SSLALYRAAGGRLTPSSKKLSPPPTVAPPAPVSTKIDALQPSNHQRLPVLIYICRSPIHS 624
S +R A G + + L P + + SN + P + C + H
Sbjct: 251 SLFKFFREAPGVIFSPAVGL----HATPIIWIVLRALGYGGSNVWQTPAYVVFCVTVGHV 306
Query: 625 PGFCVEPCTINMDFYARNDIPLGS 648
+E C + Y RN S
Sbjct: 307 SAMALEQCLV----YRRNYTAEAS 326
>gnl|CDD|179575 PRK03379, PRK03379, vitamin B12-transporter protein BtuF;
Provisional.
Length = 260
Score = 33.1 bits (76), Expect = 0.77
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 250 VARISALKPDIVLVQR--NVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYS 305
+ RI ALKPD+VL R N R + L LGI V+ V T +E+IA R +S
Sbjct: 65 LERIVALKPDLVLAWRGGNAER-QVDQLASLGIK-VMWVDATSIEQIANALRQLAPWS 120
>gnl|CDD|131706 TIGR02658, TTQ_MADH_Hv, methylamine dehydrogenase (amicyanin) heavy
chain. This family consists of the heavy chain of
methylamine dehydrogenase light chain, a periplasmic
enzyme. The enzyme contains a tryptophan
tryptophylquinone (TTQ) prothetic group derived from two
Trp residues in the light subunity. The enzyme forms a
complex with the type I blue copper protein amicyanin
and a cytochrome. Electron transfer procedes from TQQ to
the copper and then to the heme group of the cytochrome
[Energy metabolism, Amino acids and amines].
Length = 352
Score = 33.3 bits (76), Expect = 0.91
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 288 TTVLERIARCTRADLVYSVDVLLNQ----IHLGTCSRFSV------KKLSDSNKTLMFFE 337
+TV RIAR R D V +D + I L RF V L+ NKTL+F++
Sbjct: 64 STVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ 123
Query: 338 GCAFPHKGSTVILRGASRKELMKV 361
P G V L G + +M V
Sbjct: 124 FSPSPAVG-VVDLEGKAFVRMMDV 146
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 32.8 bits (75), Expect = 1.4
Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 29/230 (12%)
Query: 154 LAEKIIEEV----KPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKSMLT 209
L E +++ V K ++ID F + K T ++ G+V H M
Sbjct: 168 LTEIVVDAVLAIKKDGEDIDLFMVEIMEMKHKSATDTT----LIRGLVLDHGARHPDMPR 223
Query: 210 ALNNPKILILQCAIVYQRVE---GKLLS----LEPVIMQETEYLRNVVARISALK----- 257
+ N IL ++ Y++ E G S E ++ E +++ + V +I LK
Sbjct: 224 RVKNAYILTCNVSLEYEKTEVNSGFFYSSAEQREKLVAAERKFVDDRVKKIIELKKKVCG 283
Query: 258 --PD---IVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQ 312
PD +V+ Q+ + + + L + GI + K +ER+ + + SV+ L +
Sbjct: 284 KSPDKGFVVINQKGIDPPSLDLLAKEGILALRRAKRRNMERLTLACGGEALNSVEDLTPE 343
Query: 313 IHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVK 362
LG + + T F E P K T++++G + + ++K
Sbjct: 344 C-LGWAGLVYETTIGEEKYT--FIEEVKNP-KSCTILIKGPNDHTIAQIK 389
>gnl|CDD|238563 cd01143, YvrC, Periplasmic binding protein YvrC. These proteins
are predicted to function as initial receptors in ABC
transport of metal ions in eubacteria and archaea. They
belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct fold and ligand
binding mechanism. A typical TroA protein is comprised
of two globular subdomains connected by a single helix
and can bind the metal ion in the cleft between these
domains.
Length = 195
Score = 31.5 bits (72), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 253 ISALKPDIVLVQRNVARLAQESLQQLGIT-LVLNVKTTV 290
I ALKPD+V+V + E L+ GI +VL +++
Sbjct: 56 IVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSL 94
>gnl|CDD|238561 cd01141, TroA_d, Periplasmic binding protein TroA_d. These
proteins are predicted to function as initial receptors
in the ABC metal ion uptake in eubacteria and archaea.
They belong to the TroA superfamily of helical backbone
metal receptor proteins that share a distinct fold and
ligand binding mechanism. A typical TroA protein is
comprised of two globular subdomains connected by a
single helix and can bind their ligands in the cleft
between these domains.
Length = 186
Score = 31.2 bits (71), Expect = 2.2
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 250 VARISALKPDIVLV-QRNVARLAQESLQQLGI-TLVLNVKTTVLERI 294
V I ALKPD+V++ A+ + L+QLGI L +N + L R
Sbjct: 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRA 108
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 32.0 bits (73), Expect = 2.5
Identities = 29/157 (18%), Positives = 65/157 (41%), Gaps = 24/157 (15%)
Query: 842 QANLKQKVDDIQMKLTDPDVMNNLWNLEDSILHTNQTDATMNTLQPLLVKD-QANLKQKV 900
+A + D + +L + L N DS+L++ ++T+ L+ ++ + +QKV
Sbjct: 513 EAEKYAEEDRRRKQLIE------LKNQADSLLYS--YESTLKENGELISEELKQRAEQKV 564
Query: 901 DDIQMKLTDPDVMNNLWNLEDSIVKLKRAVVESINNWNSRLMKTRPKTKSTDSSKSLLTD 960
+ ++ LTDP++ +L L+ + + ++A++ + S TD
Sbjct: 565 EQLEAALTDPNI--SLEELKQQLEEFQQALLAI-------------GAEVYQQGGSQTTD 609
Query: 961 IVEGTPTTETSTEYVFDSEESEESDVDHVDDSDTVKT 997
VE T T + +E + + + D +
Sbjct: 610 TVEPTSDTLITATMNSSNETTLIDEFNFDFDDEETVA 646
>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41. This
family of glycosyltransferases includes O-linked
beta-N-acetylglucosamine (O-GlcNAc) transferase, an
enzyme which catalyzes the addition of O-GlcNAc to serine
and threonine residues. In addition to its function as an
O-GlcNAc transferase, human OGT, also appears to
proteolytically cleave the epigenetic cell-cycle
regulator HCF-1.
Length = 468
Score = 30.9 bits (70), Expect = 4.8
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 942 MKTRPKTKSTDSSKSLLTDIVEGTPTTETSTEYVFDSEESEESDVDHVDDSDTVKTKV-- 999
+K R K + + IV + + + D + E VD D+V T+V
Sbjct: 160 LKERVIVKFKSNGRIYDNSIVINGIDLKPLLDKLEDVKIVREKVVDAGSKRDSVSTEVNL 219
Query: 1000 ---------PRMKAILSQLLPTNVPSLPISNSLVEAQQHHTLALGCSVP 1039
P ++ I + + + +PI N L Q ++ A G VP
Sbjct: 220 PVIEVPTTEPVIQMINTGQIQITINGVPIQNGLATTQTNNKAATGEEVP 268
>gnl|CDD|221612 pfam12509, DUF3715, Protein of unknown function (DUF3715). This
domain family is found in eukaryotes, and is
approximately 170 amino acids in length.
Length = 165
Score = 29.7 bits (67), Expect = 6.8
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 23/107 (21%)
Query: 385 EQAYVIQTKKPILQSPSD---------SVADIIPKPSTDEKHTR----------SNSEST 425
++Y K LQ S S A + KPS +R +T
Sbjct: 28 PESYAFLLKDSRLQVASICQKGLKVGTSKATTLGKPSMGVYLSRYSDLLEKQAFEAGSAT 87
Query: 426 GDVKV-AIQKPASQSIQDASDPLQSEPNVTSPMSPQDLHLAVDNVPT 471
GDV V K + I D+S + N P D H++ ++
Sbjct: 88 GDVVVFKALKGKVKEISDSSISTR---NSLDPTPNFDCHVSKVSMKH 131
>gnl|CDD|212582 cd11687, PpPFK_gamma, Pichia pastoris 6-phosphofructokinase, gamma
subunit. Pichia pastoris 6-phosphofructokinase (PpPfk)
is the most complex and probably largest (1 MDa)
eukaryotic Pfk. It forms a dodecamer of four
alpha-beta-gamma trimers. The gamma unit is unique, in
contrast to other eukaryotic ATP-dependent
6-phosphofructokinases, and participates in
oligomerization of the alpha and beta chains. It is not
essential for enzymatic activity, but it modulates the
allosteric behavior of the enzyme.
Length = 346
Score = 30.4 bits (68), Expect = 7.2
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 122 LTDKFESHRNKLLQQLLIVESLSM 145
LT+ F+++ N LQQL I+ESL+M
Sbjct: 240 LTNNFDTNMNNKLQQLKILESLNM 263
>gnl|CDD|163628 cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins,
C-terminal metallophosphatase domain. YkuE is an
uncharacterized Bacillus subtilis protein with a
C-terminal metallophosphatase domain and an N-terminal
twin-arginine (RR) motif. An RR-signal peptide derived
from the Bacillus subtilis YkuE protein can direct
Tat-dependent secretion of agarase in Streptomyces
lividans. This is an indication that YkuE is transported
by the Bacillus subtilis Tat (Twin-arginine
translocation) pathway machinery. YkuE belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 29.9 bits (68), Expect = 7.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 244 EYLRNVVARISALKPDIVLV-------QRNVARLAQESLQQL 278
E L +V +I+ALKPD+V++ +V L E L++L
Sbjct: 19 ERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKL 60
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 30.5 bits (70), Expect = 8.0
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 677 FIHGNGSV---CVG-LCEIENRPPEAYDERIIMWNWCPSCKQVSSILPMSSDTWRL 728
+I GNG + +G L E PEAYDER W LP+ + W+L
Sbjct: 28 YIEGNGYIVTWAIGHLLE--LAEPEAYDERYKRWRL--------EDLPIIPEKWKL 73
>gnl|CDD|199866 cd06244, M14-like_1_7, Peptidase M14-like domain; uncharacterized
subgroup. Peptidase M14-like domain of a functionally
uncharacterized subgroup of the M14 family of
metallocarboxypeptidases (MCPs). The M14 family are
zinc-binding carboxypeptidases (CPs) which hydrolyze
single, C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. Two major subfamilies of the M14 family,
defined based on sequence and structural homology, are
the A/B and N/E subfamilies. Enzymes belonging to the
A/B subfamily are normally synthesized as inactive
precursors containing preceding signal peptide, followed
by an N-terminal pro-region linked to the enzyme; these
proenzymes are called procarboxypeptidases. The A/B
enzymes can be further divided based on their substrate
specificity; Carboxypeptidase A-like (CPA-like) enzymes
favor hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues lysine
or arginine. The A forms have slightly different
specificities, with Carboxypeptidase A1 (CPA1)
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulky aromatic side chains. Enzymes
belonging to the N/E subfamily enzymes are not produced
as inactive precursors and instead rely on their
substrate specificity and subcellular
compartmentalization to prevent inappropriate cleavages.
They contain an extra C-terminal transthyretin-like
domain, thought to be involved in folding or formation
of oligomers. MCPs can also be classified based on
their involvement in specific physiological processes;
the pancreatic MCPs participate only in alimentary
digestion and include carboxypeptidase A and B (A/B
subfamily), while others, namely regulatory MCPs or the
N/E subfamily, are involved in more selective reactions,
mainly in non-digestive tissues and fluids, acting on
blood coagulation/fibrinolysis, inflammation and local
anaphylaxis, pro-hormone and neuropeptide processing,
cellular response and others. Another MCP subfamily,
is that of succinylglutamate desuccinylase
/aspartoacylase, which hydrolyzes N-acetyl-L-aspartate
(NAA), and deficiency in which is the established cause
of Canavan disease. Another subfamily (referred to as
subfamily C) includes an exceptional type of activity in
the MCP family, that of dipeptidyl-peptidase activity of
gamma-glutamyl-(L)-meso-diaminopimelate peptidase I
which is involved in bacterial cell wall metabolism.
Length = 268
Score = 29.9 bits (67), Expect = 8.1
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 808 SLMGQEVFSIVLEKLHTNQTDATMNTLQPLLVKDQANLKQKVDDIQMKLTDPDV-MNNLW 866
S+ G ++ +V+ + + D N P +++ L K++D ++ P + NN+
Sbjct: 4 SVEGHDIPVVVVSDS-SAKVDYYHNQALPTMLEKPPELADKIEDGTIEDYAPPIWFNNIH 62
Query: 867 NLEDSILHTNQTDATMNTLQPLLVKDQANLKQKVDDIQMKLTDPDVMNNLWNL 919
E T DA M ++ L +D+ DD + DV + L N+
Sbjct: 63 PDE-----TPGIDAQMEVIERLAYEDETEFNTTDDDGEEWTETVDVDDLLENV 110
>gnl|CDD|151029 pfam10456, BAR_3_WASP_bdg, WASP-binding domain of Sorting nexin
protein. The C-terminal region of the Sorting nexin
group of proteins appears to carry a BAR-like
(Bin/amphiphysin/Rvs) domain. This domain is very
diverse and the similarities with other BAR domains are
few. In the Sorting nexins it is associated with family
PX, pfam00787.13, and in combination with PX appears to
be necessary to bind WASP along with p85 to form a
multimeric signalling complex.
Length = 237
Score = 29.7 bits (67), Expect = 9.3
Identities = 11/74 (14%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 723 SDTWRLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQVHYFAYNNIVASFIYTRIKLYEVC 782
+ ++S ++ C + + +H H ++ + + + + ++ +IK Y+
Sbjct: 168 VEEGKISQQDASTMKKRCNIMSYALQAEMNHFHSNRI--YDFKSQMQHYLEQQIKFYQKI 225
Query: 783 IPSTTLKKSLSTFD 796
+ L+++LS +D
Sbjct: 226 --AEKLEEALSRYD 237
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.381
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 68,331,357
Number of extensions: 6626245
Number of successful extensions: 5777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5719
Number of HSP's successfully gapped: 59
Length of query: 1390
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1281
Effective length of database: 6,103,016
Effective search space: 7817963496
Effective search space used: 7817963496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (28.9 bits)