RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18037
(1390 letters)
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 133 bits (337), Expect = 1e-32
Identities = 48/288 (16%), Positives = 98/288 (34%), Gaps = 35/288 (12%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-------ALTDKFESHRNKLLQQLLIVESLSMS-- 146
+H +I Y + A A + + + + L Q ++ ++
Sbjct: 106 IHP-IRIADGYEQ-------AARIAIEHLDKISDSVLVDMKNTEPLIQ--TAKT-TLGSK 154
Query: 147 ----WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNV 202
+ +A + V D D ++++ GG D+ ++ G++ K+
Sbjct: 155 VVNSCHRQMAEIAVNAVLTVA-DMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDF 212
Query: 203 SHKSMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARISA 255
SH M + + KI IL C + + + + + E E ++ +I
Sbjct: 213 SHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKE 272
Query: 256 LKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHL 315
++ + Q A L Q + V V +E IA T +V L L
Sbjct: 273 TGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFS-ELTAEKL 331
Query: 316 GTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
G + ++ E C + T+ +RG ++ + + KR
Sbjct: 332 GFAGLVKEISFGTTKDKMLVIEQCKNS-RAVTIFIRGGNKMIIEEAKR 378
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 131 bits (333), Expect = 3e-32
Identities = 59/287 (20%), Positives = 124/287 (43%), Gaps = 34/287 (11%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-----ALTDKFESHRNKLLQQLLIVESLSMS---- 146
VHS I + YR A +T L + I + +++
Sbjct: 69 VHS-TIISEGYRH-------AAEKCREILETITIAISPDDEAALIK--IAGT-AITGKGA 117
Query: 147 --WASVILPLAEKIIEEVKPDQNID-SFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVS 203
+ + L K + + ++ ++ + ++I+K GG+ +DS ++ G+V K S
Sbjct: 118 EAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERS 177
Query: 204 HKSMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARISAL 256
H +M + N KIL+L C + +++ E ++ + QE + +R + ++ A
Sbjct: 178 HPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIAS 237
Query: 257 KPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLG 316
++V Q+ + +AQ +++ GI V VK + L+R+++ T A ++ +D + +G
Sbjct: 238 GANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQ-ITTEDVG 296
Query: 317 TCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
T K++ + + GC K TV+L G + + +
Sbjct: 297 TAGLVEEKEVRGGK--MTYVTGCQNS-KAVTVLLHGGTEHVVDSLDH 340
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 131 bits (331), Expect = 9e-32
Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 37/287 (12%)
Query: 96 VHSLQKIIQAYRRDPIRPNNA--KADAALTDKFESHRNKLLQQLLIVESLSMS------W 147
VH I YR A +A + + E + L + ++S
Sbjct: 118 VHP-TVISNGYRL-------AVNEARKIIDEIAEKSTDD--ATLRKIALTALSGKNTGLS 167
Query: 148 ASVILPLA----EKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVS 203
+ L + E +D+ +I+ + K +GG+ ND+ +SGIV K
Sbjct: 168 NDFLADLVVKAVNAVAEVRDGKTIVDTANIK----VDKKNGGSVNDTQFISGIVIDKEKV 223
Query: 204 HKSMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARISAL 256
H M + N KI ++ A+ ++ E ++ + QET + +V +I
Sbjct: 224 HSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKS 283
Query: 257 KPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLG 316
++VL Q+ + +AQ L + GI V VK + +E++A+ T A +V +D L LG
Sbjct: 284 GANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDD-LTPSVLG 342
Query: 317 TCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
+K+ D + F GC P K ++++RG + + +V+R
Sbjct: 343 EAETVEERKIGDDR--MTFVMGCKNP-KAVSILIRGGTDHVVSEVER 386
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 131 bits (331), Expect = 1e-31
Identities = 62/286 (21%), Positives = 126/286 (44%), Gaps = 36/286 (12%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-----ALTDKFESHRNKLLQQLLIVESLSMS---- 146
VH +++ Y+ A A + + + ++L + I + S++
Sbjct: 115 VHP-TIVVKGYQA-------AAQKAQELLKTIACEVGAQDKEILTK--IAMT-SITGKGA 163
Query: 147 --WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH 204
+ + + + V D+ D ++I+K G + +D+ ++ G++ K
Sbjct: 164 EKAKEKLAEIIVEAVSAVVDDEG--KVDKD-LIKIEKKSGASIDDTELIKGVLVDKERVS 220
Query: 205 KSMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARISALK 257
M + + KI +L CAI + E L I QE + L+++VA I A
Sbjct: 221 AQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASG 280
Query: 258 PDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGT 317
+++ Q+ + LAQ L + GI VK + +E++A+ T A+++ ++ L+ LG
Sbjct: 281 ANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAA-LSAQDLGD 339
Query: 318 CSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
+K+S + ++F E C P K T+++RG + + +V R
Sbjct: 340 AGLVEERKISGDS--MIFVEECKHP-KAVTMLIRGTTEHVIEEVAR 382
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 130 bits (329), Expect = 1e-31
Identities = 62/293 (21%), Positives = 123/293 (41%), Gaps = 47/293 (16%)
Query: 96 VHSLQKIIQAYRR-------------DPIRPNNAK-----ADAALTDKFESHRNKLLQQL 137
VH I + YR I + A +L K S L ++
Sbjct: 117 VHP-TVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEI 175
Query: 138 LIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIV 197
E+ + + E +D +I+ + K GG +D+ +++GI+
Sbjct: 176 -SYEA------------VKSVAELRDGKYYVDFDNIQ----VVKKQGGAIDDTQLINGII 218
Query: 198 HSKNVSHKSMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVV 250
K H M + + KI +L + ++ E ++ + QE LR +V
Sbjct: 219 VDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMV 278
Query: 251 ARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLL 310
+I ++ ++V+ Q+ + +AQ L + GI V VK + ++++A+ T A +V ++D +
Sbjct: 279 DKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDE-I 337
Query: 311 NQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
+ LGT R K+ + + F GC P K ++++RG + + +++R
Sbjct: 338 SSSDLGTAERVEQVKVGEDY--MTFVTGCKNP-KAVSILVRGETEHVVDEMER 387
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 130 bits (329), Expect = 2e-31
Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 41/290 (14%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-----ALTDKFESHRNKLLQQLLIVESLSMS---- 146
+H I + Y A A + + + + L + I + S++
Sbjct: 119 IHP-SIITKGYAL-------AAEKAQEILDEIAIRVDPDDEETLLK--IAAT-SITGKNA 167
Query: 147 --WASVILPLA----EKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSK 200
++ LA +++ E+ +D +I+ +K G +S +V G+V K
Sbjct: 168 ESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIK----FEKKAGEGVEESELVRGVVIDK 223
Query: 201 NVSHKSMLTALNNPKILILQCAIVYQRVEGK---LLS----LEPVIMQETEYLRNVVARI 253
V H M + N KI ++ A+ ++ E ++ L + QE + L+++V I
Sbjct: 224 EVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHI 283
Query: 254 SALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQI 313
+ ++V VQ+ + LAQ L + GI V VK + +E++A+ T A +V +V L
Sbjct: 284 AQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKD-LTPE 342
Query: 314 HLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
LG +KL+ N F EGC P K T+++RG + + +V+R
Sbjct: 343 DLGYAEVVEERKLAGENMI--FVEGCKNP-KAVTILIRGGTEHVIDEVER 389
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 129 bits (327), Expect = 2e-31
Identities = 49/290 (16%), Positives = 110/290 (37%), Gaps = 33/290 (11%)
Query: 96 VHSLQKIIQAYRRDPIRPNNA--KADAALTDKFESHRNKLLQQLLI-VESLSMS------ 146
+H +I YR A +A +++ + ++L + LI SMS
Sbjct: 106 IHP-TSVISGYRL-------ACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGI 157
Query: 147 WASVILPLAEKIIEEVKPDQNIDSFDI-RQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHK 205
L + +K + + K G ++ +S +++G + V +
Sbjct: 158 NGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQ 217
Query: 206 SMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARISALKP 258
M + N KI L ++ +++ L+ + +E++ + + +I A
Sbjct: 218 GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGA 277
Query: 259 DIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVL-----LNQI 313
+++L + + + + G V V L+RIA+ + A ++ ++ L
Sbjct: 278 NVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEAS 337
Query: 314 HLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
LG +++ D L+ + ++VILRGA+ +++R
Sbjct: 338 MLGQAEEVVQERICDDE--LILIKNTKAR-TSASVILRGANDFMCDEMER 384
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 129 bits (328), Expect = 2e-31
Identities = 62/293 (21%), Positives = 127/293 (43%), Gaps = 47/293 (16%)
Query: 96 VHSLQKIIQAYRR-------------DPIRPNNAK-----ADAALTDKFESHRNKLLQQL 137
VH II Y++ + N+ A +L+ K + + + +
Sbjct: 126 VHP-TIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADI 184
Query: 138 LIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIV 197
+V++ ++ E +D +I+ I K GG+ ND+ +V GIV
Sbjct: 185 -VVKA------------VTQVAELRGDKWYVDLDNIQ----IVKKAGGSINDTQLVYGIV 227
Query: 198 HSKNVSHKSMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVV 250
K V H M L N KI ++ ++ ++ E ++ + +E ++ V
Sbjct: 228 VDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKV 287
Query: 251 ARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLL 310
+I A ++++ Q+ + +AQ L + G+ V K + LE++AR T +V ++D +
Sbjct: 288 DKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDE-I 346
Query: 311 NQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
++ LG S +K+ + ++F EG P K ++++RG + + + +R
Sbjct: 347 SEQDLGYASLIEERKVGEDK--MVFVEGAKNP-KSISILIRGGLERLVDETER 396
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 128 bits (325), Expect = 4e-31
Identities = 62/287 (21%), Positives = 116/287 (40%), Gaps = 38/287 (13%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-----ALTDKFESHRNKLLQQLLIVESLSMS---- 146
+H Q II+ YR A A A + + L+ + ++S
Sbjct: 115 IHP-QTIIEGYRL-------ASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKIL 166
Query: 147 --WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH 204
LA I +K N++ ++QI K+ GG +DSF+ G + +K +
Sbjct: 167 SQDKDHFAELATNAILRLKGSTNLE------HIQIIKILGGKLSDSFLDEGFILAKKFGN 220
Query: 205 KSMLTALNNPKILILQCAIVYQRVEGKLLS--------LEPVIMQETEYLRNVVARISAL 256
+ + N KILI + +V+ L + E E ++N +A+IS
Sbjct: 221 -NQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKF 279
Query: 257 KPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLG 316
+ + ++ + ++ LGI + + +ER+A T ++V + D ++ LG
Sbjct: 280 GINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDE-PSKCKLG 338
Query: 317 TCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
C L + + F GC + T++LRGA+ + L + +R
Sbjct: 339 ECDVIEEIMLGEQ--PFLKFSGCKAG-EACTIVLRGATDQTLDEAER 382
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 128 bits (325), Expect = 4e-31
Identities = 77/288 (26%), Positives = 144/288 (50%), Gaps = 35/288 (12%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-----ALTDKFESHRNKLLQQLLIVESLSMS---- 146
+H +I AYR+ A D ++ ++ + I+ S S++
Sbjct: 105 MHP-TVVISAYRK-------ALDDMISTLKKISIPVDTSNRDTMLN--IINS-SITTKVI 153
Query: 147 --WASVILPLAEKIIEEVK-PDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVS 203
W+S+ +A ++ V+ + DI++Y +++K+ GG DS V+ G++ +K+V+
Sbjct: 154 SRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVT 213
Query: 204 HKSMLTALNNPKILILQCAIVYQRVEGK---LLS----LEPVIMQETEYLRNVVARISAL 256
H M + NP+I++L ++ Y++ E + ++ ++ E EY++ + I L
Sbjct: 214 HPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQL 273
Query: 257 KPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLG 316
KPD+V+ ++ ++ LAQ L + IT + V+ T RIAR A +V + L + +G
Sbjct: 274 KPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPE-ELREEDVG 332
Query: 317 T-CSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
T +KK+ D T F C P K T++LRGAS++ L +V+R
Sbjct: 333 TGAGLLEIKKIGDEYFT--FITECKDP-KACTILLRGASKEILSEVER 377
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 128 bits (324), Expect = 8e-31
Identities = 55/290 (18%), Positives = 109/290 (37%), Gaps = 31/290 (10%)
Query: 96 VHSLQKIIQAYRR---DPIRPNNAKADAALTDKFESHRNKLLQQLLIVESLSMS------ 146
+H KI + I D E R+ LL+ ++ S+
Sbjct: 141 IHP-IKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLR---AAKT-SLGSKIVSK 195
Query: 147 WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHKS 206
+A + + V D++ D ++++ GG+ +DS +++G++ K+ SH
Sbjct: 196 DHDRFAEMAVEAVINVM-DKDRKDVDFD-LIKMQGRVGGSISDSKLINGVILDKDFSHPQ 253
Query: 207 M------LTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARI 253
M + K+ IL C + + + + + E + + ++ +
Sbjct: 254 MPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDV 313
Query: 254 SALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQI 313
D+V+ Q A L Q + V V LE IA T +V L++
Sbjct: 314 KKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQD-LSKD 372
Query: 314 HLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
LGTCSR ++ + ++ E K T +RG+++ + + +R
Sbjct: 373 KLGTCSRIYEQEFGTTKDRMLIIEQSKET-KTVTCFVRGSNKMIVDEAER 421
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 127 bits (321), Expect = 1e-30
Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 40/290 (13%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-----ALTDKFESHRNKLLQQLLI-VESLSMS--- 146
+H Q II+A+R A A + + ++LL ++S
Sbjct: 107 LHP-QIIIRAFRT-------ATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKL 158
Query: 147 ---WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVS 203
+ + + + + + IKKV GG +S +V+G+ K S
Sbjct: 159 ISQQKAFFAKMVVDAVMMLDDLLQLK------MIGIKKVQGGALEESQLVAGVAFKKTFS 212
Query: 204 HKSML---TALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARI 253
+ +NP I +L + + + + + ++ E L + + +I
Sbjct: 213 YAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKI 272
Query: 254 SALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQI 313
+VL + + +A + + V L+R + SV+ L+
Sbjct: 273 HHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNA-LSSD 331
Query: 314 HLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
LG C F ++ FF GC K T+ILRG + + + + +R
Sbjct: 332 VLGRCQVFEETQIGGE--RYNFFTGCPKA-KTCTIILRGGAEQFMEETER 378
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 127 bits (321), Expect = 1e-30
Identities = 48/295 (16%), Positives = 101/295 (34%), Gaps = 54/295 (18%)
Query: 96 VHSLQKIIQAYRR---------------DPIRPNNAK-----ADAALTDKFESHRNKLLQ 135
+ ++I+ Y + ++ K + L +
Sbjct: 107 LSV-SEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAK 165
Query: 136 QLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSG 195
LI + A I N+D +++ K+ G + S V+ G
Sbjct: 166 --LIAQ-------------ACVSIFPDSGHFNVD------NIRVCKILGSGVHSSSVLHG 204
Query: 196 IVHSKNVSHKSMLTALNNPKILILQCAIVYQRVE--GKLL-----SLEPVIMQETEYLRN 248
+V K +T++ + KI + C E G +L L E +
Sbjct: 205 MVFKKETEG--DVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDA 262
Query: 249 VVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDV 308
V I+ ++V+ VA +A + I LV L R+ + A + ++
Sbjct: 263 QVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNP 322
Query: 309 LLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
+ + +G C + ++ D+ ++ F+ ST++LRG++ + ++R
Sbjct: 323 PVLE-EMGHCDSVYLSEVGDTQ--VVVFKHEKEDGAISTIVLRGSTDNLMDDIER 374
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 126 bits (320), Expect = 2e-30
Identities = 64/292 (21%), Positives = 110/292 (37%), Gaps = 35/292 (11%)
Query: 96 VHSLQKIIQAYRRDPIRPNNA--KADAALTDKFESHRNKLLQQLLI-VESLSMS------ 146
+H II +R A +A + + + + L ++ LI + SMS
Sbjct: 120 IHP-TTIITGFRV-------ALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGA 171
Query: 147 WASVILPLAEKIIEEVKPDQNIDSFDI-RQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHK 205
+ + + VK + + V + K G + +S +V G + V+ +
Sbjct: 172 DSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQ 231
Query: 206 SMLTAL--NNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARISAL 256
+M + N KI L + R+ LE + +E + V +I
Sbjct: 232 AMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDA 291
Query: 257 KPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVL-----LN 311
+VL + + L + + I V K L RIAR T A LV S+ L
Sbjct: 292 GAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFE 351
Query: 312 QIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
+LG C K SD + +G + S++ILRGA+ L +++R
Sbjct: 352 SSYLGLCDEVVQAKFSDD--ECILIKGTSKH-SSSSIILRGANDYSLDEMER 400
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 126 bits (318), Expect = 3e-30
Identities = 60/291 (20%), Positives = 132/291 (45%), Gaps = 38/291 (13%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-----ALTDKFESHRNKLLQQLLIVESLSMS---- 146
+H I +++++ A ++ E + L + S++
Sbjct: 107 IHP-TIISESFQK-------ALEKGIEILTDMSRPVELSDRETLLN--SAAT-SLNSKVV 155
Query: 147 --WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH 204
++S++ P++ + +V S D+R ++I K GGT +D +V G+V ++ V++
Sbjct: 156 SQYSSLLSPMSVDAVMKVIDPATATSVDLR-DIKIVKKLGGTIDDCELVEGLVLTQKVAN 214
Query: 205 KSMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARISALK 257
+ T + KI ++Q + + + + ++ V+ +E Y+ N+V +I
Sbjct: 215 SGI-TRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTG 273
Query: 258 PDIVLVQRNVAR-----LAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQ 312
+++L+Q+++ R LA L ++ I +V +++ +E I + V VD
Sbjct: 274 CNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQ-FTA 332
Query: 313 IHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
LG+ L+ S K L+ GCA P K T+++RG+++ + + +R
Sbjct: 333 DMLGSAELAEEVSLNGSGK-LIKITGCASPGKTVTIVVRGSNKLVIEEAER 382
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 125 bits (317), Expect = 5e-30
Identities = 54/289 (18%), Positives = 110/289 (38%), Gaps = 38/289 (13%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-----ALTDKFESHRNKLLQQLLIVESLSMS---- 146
+ S I++ YR+ A + A L S ++ + L +MS
Sbjct: 120 ISS-HLIMKGYRK-------AVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLI 171
Query: 147 --WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSH 204
A + + + + + D + + IKK+ GG +S ++G+ K S+
Sbjct: 172 HNNADFFVKMCVDAVLSLDRN----DLDDK-LIGIKKIPGGAMEESLFINGVAFKKTFSY 226
Query: 205 ---KSMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARIS 254
+ NNPKIL L + + + + + ++ E + + + ++
Sbjct: 227 AGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVE 286
Query: 255 ALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIH 314
+IVL + + LA + I V + R+ + + + + H
Sbjct: 287 ETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTS-DIKPEH 345
Query: 315 LGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
LGTC+ F ++ F+GC K T++LRG + + + +V+R
Sbjct: 346 LGTCALFEEMQIGSE--RYNLFQGCPQA-KTCTLLLRGGAEQVIAEVER 391
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 124 bits (315), Expect = 6e-30
Identities = 52/289 (17%), Positives = 112/289 (38%), Gaps = 42/289 (14%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-------ALTDKFESHRNKLLQQLLIVESLSMS-- 146
+H Q II +R A A A+ + + + Q L+ + ++S
Sbjct: 108 IHP-QTIIAGWRE-------ATKAARQALLNSAVDHGSDEVKFR--QDLMNIAGTTLSSK 157
Query: 147 ----WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNV 202
LA + + +K N++ + + K GG+ DS++ G + K +
Sbjct: 158 LLTHHKDHFTKLAVEAVLRLKGSGNLE------AIHVIKKLGGSLADSYLDEGFLLDKKI 211
Query: 203 SHKSMLTALNNPKILILQCAIVYQRVE--------GKLLSLEPVIMQETEYLRNVVARIS 254
+ + N KILI + +++ + + E E ++ V RI
Sbjct: 212 GV-NQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERIL 270
Query: 255 ALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIH 314
+ + ++ + ++ G+ + + +ER+A T ++ + D +
Sbjct: 271 KHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDH-PELVK 329
Query: 315 LGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
LG+C + + L+ F G A + T++LRGA+++ L + +R
Sbjct: 330 LGSCKLIEEVMIGED--KLIHFSGVALG-EACTIVLRGATQQILDEAER 375
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 125 bits (317), Expect = 7e-30
Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 46/296 (15%)
Query: 96 VHSLQKIIQAYRR---------------DPIRPNNAK-----ADAALTDKFESHRNKLLQ 135
+ + +IIQ Y + N+ ++ K + L +
Sbjct: 122 LSA-VEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSE 180
Query: 136 QLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSG 195
L+ E+ ++ + I F++ +++ K+ GG+ ++S V+ G
Sbjct: 181 --LVSEA------------VSHVLPVAQQAGEIPYFNVD-SIRVVKIMGGSLSNSTVIKG 225
Query: 196 IVHSKNV-SHKSMLTALNNPKILILQCAIVYQRVE--GKLL-----SLEPVIMQETEYLR 247
+V ++ H L+ K+ + C + E G +L + E + +
Sbjct: 226 MVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQID 285
Query: 248 NVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVD 307
++ I+ + + ++ V LA L + GI ++ L R+ R A + +
Sbjct: 286 AMMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLG 345
Query: 308 VLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
+ LG ++ T+ E + ST+ILRGA++ L ++R
Sbjct: 346 APTPE-ELGLVETVKTMEIGGDRVTVFKQEQGEIS-RTSTIILRGATQNNLDDIER 399
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 115 bits (291), Expect = 1e-29
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 12/178 (6%)
Query: 189 DSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEGKL-------LSLEPVIMQ 241
DS V+ G++ +K+V+H M + NP+I++L ++ Y++ E + ++
Sbjct: 3 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 62
Query: 242 ETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRAD 301
E EY+ + I LKPD+V+ ++ ++ LAQ L + +T + V+ T RIAR A
Sbjct: 63 EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 122
Query: 302 LVYSVDVLLNQIHLGT-CSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKEL 358
+V + L + +GT +KK+ D F C P K T++LRGAS
Sbjct: 123 IVSRPEE-LREDDVGTGAGLLEIKKIGDEY--FTFITDCKDP-KACTILLRGASHHHH 176
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase,
signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Length = 394
Score = 116 bits (292), Expect = 6e-28
Identities = 37/237 (15%), Positives = 80/237 (33%), Gaps = 52/237 (21%)
Query: 1141 ISYALSSFDYQYKLEELKAAHEIETNECKIPHIDIKFSDTAANFSVKMYFADLFAELRKF 1200
++++++ + L ++ K+ + + ++F K Y +F LR+
Sbjct: 34 VNHSINELSHVQIPVMLMPDDFKAYSKIKVDNHLFNKENMPSHFKFKEYCPMVFRNLRER 93
Query: 1201 SCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEKGEESFIRSLSRC 1260
++ F SL+R
Sbjct: 94 FGI-DDQDFQNSLTRSAPLPNDSQ------------------------------------ 116
Query: 1261 IRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNCFENSSPTLLCK 1320
+SG+ F + D R+I+K ++ ++ Y+ Y+ E TLL +
Sbjct: 117 -------ARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQYIV---ECHGITLLPQ 166
Query: 1321 IFGVFRVICQNNNSKTRSNLLVMENLFHSR-NIKLRFDLKGSLRNRLVDTSLDSMDS 1376
G++R+ ++V N+F R ++ ++DLKGS R + +
Sbjct: 167 FLGMYRLNVDGVE----IYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKEL 219
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 118 bits (299), Expect = 7e-28
Identities = 56/296 (18%), Positives = 113/296 (38%), Gaps = 48/296 (16%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-----ALTDKFESHRNKLLQQLLIVESLSMS---- 146
+H + I + + AK A + E R L+ + + S+
Sbjct: 106 LHP-RIITEGFEA-------AKEKALQFLEQVKVSKEMDRETLID---VART-SLRTKVH 153
Query: 147 --WASVILPLAEKIIEEVK-PDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVS 203
A V+ I +K D+ ID F + I ++ + D+ ++ G+V
Sbjct: 154 AELADVLTEAVVDSILAIKKQDEPIDLFMVE----IMEMKHKSETDTSLIRGLVLDHGAR 209
Query: 204 HKSMLTALNNPKILILQCAIVYQRVEGK---LLS----LEPVIMQETEYLRNVVARISAL 256
H M + + IL ++ Y++ E E ++ E +++ + V +I L
Sbjct: 210 HPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIEL 269
Query: 257 KPD---------IVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVD 307
K +V+ Q+ + + ++L + GI + K +ER+ + S+D
Sbjct: 270 KKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLD 329
Query: 308 VLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
LN L + L + T F E C P + T++++G ++ L ++K
Sbjct: 330 D-LNPDCLLGHAGVYEYTLGEEKFT--FIEKCNNP-RSVTLLIKGPNKHTLTQIKD 381
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 118 bits (298), Expect = 1e-27
Identities = 69/300 (23%), Positives = 142/300 (47%), Gaps = 41/300 (13%)
Query: 96 VHSLQKIIQAYRR-------------DPIRPNNAK-----ADAALTDKFESHRNKLLQQL 137
+H IIQA ++ P+ N A++ K+ H ++ + +L
Sbjct: 116 IHP-VIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCEL 174
Query: 138 LIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIV 197
+++ + + + + + V+ + N + DI++YV+++K+ GG DS V+ G++
Sbjct: 175 -ALDA--------VKTVRKDLGQTVEGEPNFE-IDIKRYVRVEKIPGGDVLDSRVLKGVL 224
Query: 198 HSKNVSHKSMLTALNNPKILILQCAIVYQRVEGK---LLS----LEPVIMQETEYLRNVV 250
+K+V H M + NP++++L C + Y++ E + + ++ E E ++ +
Sbjct: 225 LNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMC 284
Query: 251 ARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLL 310
+I A++P +V+ ++ V+ LAQ L + G +++ VK + RIAR T A +V V+ L
Sbjct: 285 EQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVED-L 343
Query: 311 NQIHLGT-CSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMI 369
+ +GT C F V+ + D + F + C P + K K + +F+
Sbjct: 344 KESDVGTNCGLFKVEMIGDEYFS--FLDNCKEP-GSGSGWSHPQFEKGSGKRRWKKNFIA 400
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 116 bits (294), Expect = 4e-27
Identities = 52/298 (17%), Positives = 115/298 (38%), Gaps = 47/298 (15%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-------ALTDKFESHRNKLLQQLLIVESLSMS-- 146
VH + I + A+ ++ ++ S+ + L Q + S S+
Sbjct: 113 VHP-RIITDGFEI-------ARKESMKFLDEFKISKTNLSNDREFLLQ--VARS-SLLTK 161
Query: 147 ----WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNV 202
V+ P+ + V Q D+ D+ V+I ++ + D+ + G+V
Sbjct: 162 VDADLTEVLTPIVTDAVLSVYDAQA-DNLDLH-MVEIMQMQHLSPKDTTFIKGLVLDHGG 219
Query: 203 SHKSMLTALNNPKILILQCAIVYQRVEGK---LLS----LEPVIMQETEYLRNVVARISA 255
H M T + N +LIL ++ Y++ E S + + E +++ + +I
Sbjct: 220 RHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIID 279
Query: 256 LKPD----------IVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYS 305
LK + +++ Q+ + ++ + + I + K +ER+ T + S
Sbjct: 280 LKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNS 339
Query: 306 VDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRGASRKELMKVKR 363
V+ L+ LG + + + T + P K T++++G++ L + K
Sbjct: 340 VED-LSPQILGFSGLVYQETIGEEKFT--YVTENTDP-KSCTILIKGSTHYALAQTKD 393
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 116 bits (293), Expect = 4e-27
Identities = 50/294 (17%), Positives = 122/294 (41%), Gaps = 42/294 (14%)
Query: 96 VHSLQKIIQAYRRDPIRPNNAKADA-----ALTDKFESHRNKLLQQLLIVESLSMS---- 146
+H I +++ A + + K + L + + S+S
Sbjct: 115 IHP-TIIADSFQS-------AAKRSVDILLEMCHKVSLSDREQLVR--AAST-SLSSKIV 163
Query: 147 --WASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKN-VS 203
++S + PLA + ++ D+N + D+ +++ K GGT +D+ ++ G+V ++ +
Sbjct: 164 SQYSSFLAPLAVDSVLKIS-DENSKNVDLN-DIRLVKKVGGTIDDTEMIDGVVLTQTAIK 221
Query: 204 HKSMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLRNVVARISAL 256
T KI ++Q I + + ++ ++ +E YL N+ +I
Sbjct: 222 SAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKA 281
Query: 257 KPDIVLVQRNVAR-----LAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLN 311
K +++L+Q+++ R LA L +L I +V +++ +E +++ + +++
Sbjct: 282 KCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIEL-FT 340
Query: 312 QIHLGTCSRFSVKKLSDSNKTLMFFEGCAFP--HKGSTVILRGASRKELMKVKR 363
+ L + S ++ G +V++RGA+ + + +R
Sbjct: 341 EDRLDSADLVEEIDSDGS--KIVRVTGIRNNNARPTVSVVIRGANNMIIDETER 392
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma;
phosphoinositide, structural genomics, structural
genomics consortium, SGC, transferase; 2.80A {Homo
sapiens}
Length = 392
Score = 111 bits (279), Expect = 3e-26
Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 59/255 (23%)
Query: 1141 ISYALSSFDYQYKLEELKAAHEIETNECKIPHIDIKFSDTAANFSVKMYFADLFAELRKF 1200
++++++ L +++ K+ + + ++F K Y +F LR
Sbjct: 26 VAHSINELSQVPPPVMLLPDDFKASSKIKVNNHLFHRENLPSHFKFKEYCPQVFRNLRDR 85
Query: 1201 SCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEKGEESFIRSLSRC 1260
++ ++ SL+R
Sbjct: 86 FGI---------------------------------------------DDQDYLVSLTRN 100
Query: 1261 IRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNCFENSSPTLLCK 1320
E+ G S F + D ++KE+S ++ + NY+ Y+ C N TLL +
Sbjct: 101 PPSESEG--SDGRFLISYDRTLVIKEVSSEDIADMHSNLSNYHQYIVKCHGN---TLLPQ 155
Query: 1321 IFGVFRVICQNNNSKTRSNLLVMENLFHSR-NIKLRFDLKGSLRNRLVD----TSLDSMD 1375
G++RV N + S +LVM N+F R + ++DLKGSL +R
Sbjct: 156 FLGMYRVSVDNED----SYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTL 211
Query: 1376 SDAVNFGQNEEIYLP 1390
D +N+++Y+
Sbjct: 212 RDMDFLNKNQKVYIG 226
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 97.3 bits (243), Expect = 2e-23
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 10/158 (6%)
Query: 193 VSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEGKL-------LSLEPVIMQETEY 245
+SGIV K H M + N KI ++ A+ ++ E + ++ + QET
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 246 LRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYS 305
+ +V +I ++VL Q+ + +AQ L + GI V VK + +E++A+ T A +V
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 306 VDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPH 343
+D L LG +K+ D T F GC H
Sbjct: 121 LDD-LTPSVLGEAETVEERKIGDDRMT--FVMGCKNHH 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.1 bits (207), Expect = 3e-16
Identities = 94/700 (13%), Positives = 194/700 (27%), Gaps = 232/700 (33%)
Query: 752 HHLHQE----QVHYFAYNNIVASFIYTRIKLYEVCIPSTTLKKSLSTFDKNGLFEEVKKW 807
HH H + + Y Y +I++ F + FD + + K
Sbjct: 3 HHHHMDFETGEHQY-QYKDILSVF----------------EDAFVDNFDCKDVQDMPK-- 43
Query: 808 SLMGQEVFSIVLEKLHTNQTDATMNTLQPLLVKDQANLKQKVDDIQMKLTDPDVMNNLWN 867
+ S K+++D I + D ++
Sbjct: 44 -----SILS-----------------------------KEEIDHI---IMSKDAVSGTLR 66
Query: 868 LEDSILHTNQTDATMNTLQPLLVKDQANLKQKVDDIQMKLTDPDVM--------NNLWNL 919
L L + Q + ++ +L + L I+ + P +M + L+N
Sbjct: 67 LFW-TLLSKQEEMVQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 920 EDSIVKLKRAVVESINNWNSRLMKTRPKTKST-----DSSKSLLTDIVEGTPTTETSTEY 974
K + ++ L++ RP S K+ + V + + ++
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 975 -VF-------DSEES------------EESDVDHVDDSDTVKTKVPRMKAILSQLL--PT 1012
+F +S E+ + + D S +K ++ ++A L +LL
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 1013 NVPSLPI-----SNSLVEAQQHHTLALGCSVPVVHSSKSLLTDIVEGTPTTETSTEYVFD 1067
L + + A L C + + K +TD + TT S ++
Sbjct: 243 YENCLLVLLNVQNAKAWNA-----FNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSM 296
Query: 1068 SEESEESDVDHVDDSDTVKTKVPRMKAILSQLLPTNVPSLPISNSLVEAQQHHTLALGCS 1127
+ +E K++L + L LP E + L
Sbjct: 297 TLTPDEV------------------KSLLLKYLDCRPQDLP-----REVLTTNPRRL--- 330
Query: 1128 VPVVVYEQEPSSIISYALSSF----DY--QYKLEELKAAHEIETNECKIPHIDIKFSDTA 1181
SII+ ++ D ++L IE + + A
Sbjct: 331 -----------SIIAESIRDGLATWDNWKHVNCDKLTTI--IE--------SSLNVLEPA 369
Query: 1182 ANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILK 1241
+ F L F P I ++ + W D ++
Sbjct: 370 ---EYRKMFDRLSV----F--PPSAH--IPTILLSLIWFDV---------IKSDVMVVVN 409
Query: 1242 EMSR---LEKGEESFIRSL------------------SRCI-RWEARGGKSGSNFCKTKD 1279
++ + +EK + S+ + + +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 1280 DRFI-------LKEMSRLEMDSFLTFAPNY--YNYVKNCFENSSPTLLCK-----IFGVF 1325
D++ LK + E + F + + +++ + S
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTL--FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 1326 RV----ICQNNNSKTR--SNLL-----VMENLFHSRNIKL 1354
+ IC N+ R + +L + ENL S+ L
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Score = 72.2 bits (176), Expect = 9e-13
Identities = 72/533 (13%), Positives = 162/533 (30%), Gaps = 170/533 (31%)
Query: 2 IAQALF---DSEYIKCISGPGSGAGDSKFSLDALYTIVCQDEEESSPVDPLRIHSSNSTS 58
+ QAL ++ + I G G+G K + VC ++
Sbjct: 140 LRQALLELRPAKNV-LIDGVL-GSG--KTWVALD---VCLSY---------KVQCKMDFK 183
Query: 59 SFHLDLNLEDSTASIRPNKNSATRTTREISENPNLLPVHSLQKIIQAYRRDPIRPNNAKA 118
F L+L +S ++ +I N HS +R ++ +A
Sbjct: 184 IFWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHS--------SNIKLRIHSIQA 232
Query: 119 DAALTDKFES--HRNKLLQQLLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQY 176
L +S + N LL ++ V+ + ++F++
Sbjct: 233 --ELRRLLKSKPYENCLL-----------------------VLLNVQNAKAWNAFNLSCK 267
Query: 177 VQIKKVDGGTRNDSFVVSGIVHSKNVSHKSM------LT----------ALNNP------ 214
+ + TR V+ + + +H S+ LT L+
Sbjct: 268 ILLT-----TRFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 215 ---KILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVAR-ISALKPDIVLVQRNVARL 270
+ +I+ + + L + + + L ++ ++ L+P
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------- 371
Query: 271 AQESLQQLGI----------TLVL---NVKTTVLERIA-RCTRADLV--------YSV-D 307
++ +L + L L +V + + + + + LV S+
Sbjct: 372 -RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 308 VLLN---------QIHLGTCSRFSVKKLSDSNKTLM------FFEGCAFPHKGSTVILRG 352
+ L +H +++ K DS+ + F+ H L+
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-H------LKN 483
Query: 353 ASRKELMKVKRVTSFMIYVLYNW---KLESS------------LLMDEQAY--VIQTKKP 395
E M + R M+++ + + K+ L + Y I P
Sbjct: 484 IEHPERMTLFR----MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 396 ILQSPSDSVADIIPKPSTDEKHTRSNSESTGDVKVAIQKPASQSIQDASDPLQ 448
+ +++ D +PK + S+ T +++A+ ++A +Q
Sbjct: 540 KYERLVNAILDFLPKIEENLIC----SKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 70.3 bits (171), Expect = 4e-12
Identities = 81/627 (12%), Positives = 157/627 (25%), Gaps = 220/627 (35%)
Query: 388 YVIQTKKPILQSPSDSVADIIPKPSTDEKHTR------SNSESTGDVKVAIQKPASQSIQ 441
V K IL + + II R S E V+ +++ + +
Sbjct: 37 DVQDMPKSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFVEEVLRINYK 92
Query: 442 DASDPLQSEPNVTSPMSPQDLHLAVDNVPTNSFRKALDDIILSVSPTIKYTVPYLENET- 500
P+++E S T + + D + KY V L+
Sbjct: 93 FLMSPIKTEQRQPSM-------------MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 501 ----------------------GKKC---------DLRKYFPDNIYW------------- 516
GK ++ I+W
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 517 ------SAQLDPAAPIVKNETPVETIPRHTLELKE-----------PHAFLSEVLTETCD 559
Q+DP I ++ + L VL +
Sbjct: 200 EMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQN 255
Query: 560 SAKVR--------------SSLALYRAAGGR----LTPSSKKLSPPPTVAPPAP-VSTKI 600
+ + + +A L S L+P + + +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 601 DALQPSNHQRLPVLIYICRSPIHSPGFCVEPCTINMDFYARNDIP-----LGSFLE---- 651
L P + I I T D + + + S L
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRD-----GLATW--DNWKHVNCDKLTTIIESSLNVLEP 368
Query: 652 -------KYC--FRRDYKCPSAT-CLIPTLEHERWFIHGNGSVCVGLCEIENRPPEAYDE 701
F P+ LI WF D
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLI-------WF-----------------DVIKSDV 404
Query: 702 RIIMWNWCPSCKQVSSILPMSSDTWRLSL-AKFLDLRFNCVPLGCKTASCTHHLHQEQV- 759
+++ N S++ +S+ + +L+L+ LH+ V
Sbjct: 405 MVVV-NKL----HKYSLVEKQPKESTISIPSIYLELKVKLENEY--------ALHRSIVD 451
Query: 760 HY-----FAYNNIVA----SFIYTRIKLYEVCIPSTTLKKSLSTFDKNGLFEEVKKWSL- 809
HY F ++++ + Y+ I + L + + L
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIG-HH-----------LKNIEHPERMTLFRMVFLD 499
Query: 810 ---MGQEVFSIVLEKLHTNQTDATMNTLQPL------LVKDQANLKQKVDDIQMKLTDPD 860
+ Q+ I + N + + +NTLQ L + + ++ V+ I
Sbjct: 500 FRFLEQK---IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-------- 548
Query: 861 VMNNLWNLEDSILHTNQTD----ATMN 883
++ L +E++++ + TD A M
Sbjct: 549 -LDFLPKIEENLICSKYTDLLRIALMA 574
Score = 60.3 bits (145), Expect = 4e-09
Identities = 111/813 (13%), Positives = 225/813 (27%), Gaps = 320/813 (39%)
Query: 59 SFHLDLN---LEDSTASI-----------RPNKNSATRTTREISENPNLLPVHSLQKIIQ 104
+F + + ++D SI + S T + ++++Q
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-------EEMVQ 80
Query: 105 AYRRDPIRPN----------NAKADAALTDKFESHRNKLLQQLLIVESLSMSWASVILPL 154
+ + +R N + + +T + R++L + ++S L L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 155 AEKIIEEVKPDQNIDSFDIRQYVQIKKVDG--GTRNDSFVVSGIVHSKNVSHKSMLTA-- 210
+ + E++P +N+ +DG G SG K+ +
Sbjct: 141 RQA-LLELRPAKNV------------LIDGVLG--------SG---------KTWVALDV 170
Query: 211 LNNPKILILQCAIVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARL 270
+ K+ ++ +L + + P+ VL
Sbjct: 171 CLSYKVQCKMDFKIF-------------------WLN--LKNCN--SPETVL-------- 199
Query: 271 AQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVDVLLNQIHLGTCSRFSVKKLSDSN 330
E LQ+L + N +R+D ++ + ++ I
Sbjct: 200 --EMLQKLLYQIDPNW----------TSRSDHSSNIKLRIHSI-------------QAEL 234
Query: 331 KTLMFFEGCAFPHKGSTVILRGASRKELMKVKRVTSFMIYVLYNWKLESSLLMDEQAYVI 390
+ L+ + P++ ++L + A+ +
Sbjct: 235 RRLLKSK----PYENCLLVLLNVQNAKAWN--------------------------AFNL 264
Query: 391 QTKKPILQSPSD-SVADIIPKPSTDEKHTRSNSESTG----DVKVAIQKPASQSIQDASD 445
K IL + V D + + H + S +VK + K QD
Sbjct: 265 SCK--ILLTTRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--- 317
Query: 446 PLQSEPNVTSPMSPQDLHLAV------DNVPT-NSFRKALDDIILSVSPTIKYTVPYLEN 498
L E T+P L++ D + T ++++ D ++ I+ ++ LE
Sbjct: 318 -LPREVLTTNP-----RRLSIIAESIRDGLATWDNWKHVNCD---KLTTIIESSLNVLEP 368
Query: 499 ETGKKCDLRKY------FPDNIYWSAQLDPAAPIVKNETPVETIPRHTLEL--KEPHAFL 550
+ RK FP + IP L L +
Sbjct: 369 A-----EYRKMFDRLSVFPPS-------------AH-------IPTILLSLIWFDVIKSD 403
Query: 551 SEVLTETCDSAKVRSSLALYRAAGGRLTPSSKKLSPPPTVAPPAPVSTKIDALQPSNHQR 610
V+ + SL + ++ I ++ +
Sbjct: 404 VMVVVNKL----HKYSLVEKQPKESTIS---------------------IPSIYLELKVK 438
Query: 611 LPVLIYICRSPIHSPGFCVEPCTINMDFYARNDIPLGSFLEKYCFRRDYKCPSATCLIPT 670
L +H S ++ Y + + LIP
Sbjct: 439 LENEYA-----LHR-----------------------SIVDHYNIPKTFDSDD---LIPP 467
Query: 671 LEHERWFIHGNGSVCVG--LCEIENRPPEAYDERIIMWNWCPSCKQVSSILPMSSDTWRL 728
+ ++ H +G L IE+ ER+ ++ M
Sbjct: 468 YLDQYFYSH------IGHHLKNIEH------PERM-------------TLFRM------- 495
Query: 729 SLAKFLDLRF------NCVPLGCKTASCTHHLHQEQVH--YF-----AYNNIVASFIYTR 775
FLD RF + + S + L Q + + Y Y +V + +
Sbjct: 496 ---VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 776 IKLYEVCI--PSTTLKKSLSTFDKNGLFEEVKK 806
K+ E I T L + + +FEE K
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.3 bits (182), Expect = 3e-13
Identities = 81/578 (14%), Positives = 164/578 (28%), Gaps = 194/578 (33%)
Query: 26 KF--SLDALYTIVCQDEEESSPVDPLRIHSSNSTSSF--HLDLNLEDSTASIRPN--KNS 79
+F L D+E ++P + L F ++ +E S
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAE-L-------VGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 80 ATRTTREISENPNLLPVHSL---------------QKIIQAY---RRDPIRPNNAKADAA 121
T E + +H+L +++I+ Y R RP + K+++A
Sbjct: 88 LTEFENCYLEGND---IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 122 LTDKFESHRNKL----------------LQQL-----LIVESLSMSWASVILPLAEKIIE 160
L +L L+ L ++V L I AE + E
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL-------IKFSAETLSE 197
Query: 161 EVKPDQNIDS-----FDIRQYVQIKKVDGGTR-NDSFVVSGIVHSKNVSHKSMLTALNNP 214
++ + + +I ++++ + + +++S + S P
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLE----NPSNTPDKDYLLSIPI--------SC------P 239
Query: 215 KILILQCA--IVYQRVEGKLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVAR-LA 271
I ++Q A +V ++ G P LR+ + + +V A +A
Sbjct: 240 LIGVIQLAHYVVTAKLLG----FTP------GELRSYLKGATGHSQGLV-----TAVAIA 284
Query: 272 Q----ESLQQLGITLVLNVKTTVLERI-ARCTRADLVYSVDVLLNQIHLGTCSRFSVKKL 326
+ ES + TVL I RC A Y + L
Sbjct: 285 ETDSWESFFVSVRKAI-----TVLFFIGVRCYEA---YPN------------TSLPPSIL 324
Query: 327 SDSNKTLMFFEGCAFPHKGSTVIL--RGASRKELMK-VKRV-----TSFMIYV-LYNWKL 377
DS + P + +L +++++ V + + + L N
Sbjct: 325 EDSLE-----NNEGVP----SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--- 372
Query: 378 ESSLLMDEQAYVIQTKKPI-LQSPSDSVADIIPKPSTDEKHTRSNSESTGDVKVAIQK-- 434
+ + V+ + P L + ++ D+ + K+
Sbjct: 373 -GA-----KNLVV-SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-----KLKFSNRF 420
Query: 435 -PA-----SQSIQDASDPLQSE-PNVTSPMSPQDLHLAVDNVPTNS-FRKALDDIILSVS 486
P S + ASD + + + +D+ + V + S R I +
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 487 PTIKYTVPYLENETGKKCDLRKYFPDNIYWSAQLDPAA 524
I + W A
Sbjct: 481 DCI--------------------IRLPVKWETTTQFKA 498
Score = 54.7 bits (131), Expect = 3e-07
Identities = 90/582 (15%), Positives = 176/582 (30%), Gaps = 165/582 (28%)
Query: 469 VPTNSFRKA--LDDIILSV--SPTIKYTVPYLENETGKKCDLRKYFPDNIYWSAQLDPAA 524
VPT SF A L + + PT + ++E +L F Y S+ ++P+
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFA---ADDEPTTPAELVGKFLG--YVSSLVEPSK 76
Query: 525 -----PIVKNETPVETIPRHTLELKEPHAFLSEVLTE-TCDSAKVRSSLALY---RAAGG 575
++ + LE + HA +++L E K + + Y R
Sbjct: 77 VGQFDQVLN--LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 576 RLTPSSKKLSPPPTVAPPAPVSTKI--------------DALQ------PSNHQRL---- 611
R P KK + A + ++ + L+ L
Sbjct: 135 R--PFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 612 -PVLIYICRSPIHSPGFCVEPCTINMDFYA----RNDIPLGSFLEKYCFRRDYKCPSATC 666
L + R+ + + T ++ ++ P +L CP
Sbjct: 192 AETLSELIRTTLDAEKVF----TQGLNILEWLENPSNTPDKDYL-LSIP---ISCP---- 239
Query: 667 LIPTLEHERWFIHGNGSVCVGLCEIENRPPEAYDERIIMWNWCPSCKQ--VSSILPMSSD 724
LI ++ H V ++ P + Q V+++ +D
Sbjct: 240 LIGVIQ----LAH----YVV-TAKLLGFTPGELRSYL---KGATGHSQGLVTAVAIAETD 287
Query: 725 TW---RLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQVHYFAYNNIVASFIYTRIKLYEV 781
+W +S+ K + + F +G + ++ + ++ S + ++ E
Sbjct: 288 SWESFFVSVRKAITVLFF---IGVRC-------YE----AYPNTSLPPSILEDSLENNE- 332
Query: 782 CIPSTTLKKSLSTFDKNGLFEEVKKW--SLMGQEVFSIVLEKLHTNQTD--------ATM 831
+PS L S+S + + + V K L + I L N ++
Sbjct: 333 GVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISL----VNGAKNLVVSGPPQSL 386
Query: 832 NTLQPLL--VKDQANLKQ-KVDDIQMKL---------TDPDVMNNLWNLEDSILHTNQTD 879
L L K + L Q ++ + KL P H+
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP-------------FHS---- 429
Query: 880 ATMNTLQPLLVKD--QANLKQKVDDIQMKLTDPDVMNNLWNLEDSIVK-LKRAVVESINN 936
+ L+ KD + N+ DIQ+ + D ++L L SI + + ++
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 937 WNSRLMKTRPKTKSTDSSK-------------SLLTDIVEGT 965
W T ++ L +GT
Sbjct: 490 W--------ETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Score = 53.9 bits (129), Expect = 4e-07
Identities = 100/566 (17%), Positives = 167/566 (29%), Gaps = 194/566 (34%)
Query: 812 QEVFSIVLEKLHTNQTDATMNTLQP-----LLVKDQANLKQKVDDIQMKLTDPDVMNNLW 866
QE F+ +L + T+ +P L+ K + V+ ++ D + L
Sbjct: 34 QEQFNKILPE----PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 867 NLEDSILHTNQTDATMNTLQPLLVKDQANLKQKVDDIQMKLTDPDVMNNLWNLEDSIVKL 926
E+ L N DI + L D+ +
Sbjct: 90 EFENCYLEGN-------------------------DIHA------LAAKLLQENDTTLVK 118
Query: 927 KRAVVESINNWNSRLMKTRPKTKSTDSSKSLLTDIVE------------GTPTT------ 968
+ ++++ +R+M RP K ++S+ L + E G
Sbjct: 119 TKELIKNY--ITARIMAKRPFDKKSNSA--LFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 969 ---ETSTEYVFD----SEESEESDVDHVDDSDTVKTKVPRMKAILSQLLPTNVP------ 1015
+T V D S E+ + D++ V T+ + L P+N P
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN--PSNTPDKDYLL 232
Query: 1016 SLPISNSLVEAQQ--HHTLA---LGCSVPVVHSSKSLLTDIVEGTPT---TETSTEYVFD 1067
S+PIS L+ Q H+ + LG + + S T +G T + D
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET-----D 287
Query: 1068 SEESEESDVDHVDDSDTVKTKVPRMKAIL------SQLLPTNVPSLPISNSLVEAQQHHT 1121
S ES V + +L P+ + S++E +
Sbjct: 288 SWESFFVSVR-------------KAITVLFFIGVRCYEA---YPNTSLPPSILED----S 327
Query: 1122 LALGCSVPVVVYEQEPSSIISYALSSFDYQYKLEELKAAHEIETNECKIP---HIDIKFS 1178
L VP S LS + E+++ +TN +P ++I
Sbjct: 328 LENNEGVP------------SPMLSISNL--TQEQVQDYVN-KTNS-HLPAGKQVEISLV 371
Query: 1179 DTAANFSVKMYFADLFA---ELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNF----- 1230
+ A N V L+ LRK P G + SR I + R K + F
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-----SR-IPFSERKLKFSNRFLPVAS 425
Query: 1231 -----------------CKTKDDRFILKEM----------SRLEKGEESFIRSLSRCI-- 1261
+ F K++ S L S + CI
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 1262 ---RWEA-------------RGGKSG 1271
+WE GG SG
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASG 511
Score = 47.7 bits (113), Expect = 4e-05
Identities = 41/248 (16%), Positives = 68/248 (27%), Gaps = 111/248 (44%)
Query: 87 ISENPNLLPVH----SLQKIIQAYR----------RDPIRPNNAKADAALTD-KFESHRN 131
+ NP L +H ++I + Y + + + T F S +
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 132 KLLQ----Q--LLIVESLSMSWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGG 185
L Q L ++E A E++K G
Sbjct: 1725 LLSATQFTQPALTLME------------KA--AFEDLK-------------------SKG 1751
Query: 186 TRNDSFVVSGIVHSKNVSHKSML---TALNNPKILILQCA------------IVYQRVEG 230
+G HS L AL + +V+ R G
Sbjct: 1752 LIPADATFAG--HS--------LGEYAAL---------ASLADVMSIESLVEVVFYR--G 1790
Query: 231 KLLSLEPVIMQETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTV 290
+ V + E R+ + A+ P V A +QE+LQ V
Sbjct: 1791 MTMQ---VAVPRDELGRSNYG-MIAINPGRV-----AASFSQEALQY------------V 1829
Query: 291 LERIARCT 298
+ER+ + T
Sbjct: 1830 VERVGKRT 1837
Score = 43.5 bits (102), Expect = 6e-04
Identities = 42/273 (15%), Positives = 78/273 (28%), Gaps = 117/273 (42%)
Query: 98 SLQKIIQAYRRDPIRPNNAKADAALTDKFESHRNKLLQQLLIVESLSMSWASVI--LPLA 155
S+ I+ NN LT F + K +++ +M + +++
Sbjct: 1660 SILDIVI---------NNPVN---LTIHFGGEKGKRIRENYS----AMIFETIVDGKLKT 1703
Query: 156 EKIIEEVKPDQNIDSF-------DIRQYVQ-------------IKKVDGGTRNDSFVVSG 195
EKI +E+ +F Q+ Q +K G D+ +G
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS-KGLIPADA-TFAG 1761
Query: 196 IVHSKNVSHKSML---TALNNPKILILQCA------------IVYQRVEGKLLS------ 234
HS L AL + +V+ R G +
Sbjct: 1762 --HS--------LGEYAAL---------ASLADVMSIESLVEVVFYR--GMTMQVAVPRD 1800
Query: 235 -----------LEPVIMQET---EYLRNVVARISALKPDIVLV--------Q-------R 265
+ P + + E L+ VV R+ +V + Q R
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
Query: 266 NVARLAQESLQQLG---ITLV-LNVKTTVLERI 294
+ + L + I ++ L + LE +
Sbjct: 1861 ALDTVT-NVLNFIKLQKIDIIELQKSLS-LEEV 1891
Score = 34.3 bits (78), Expect = 0.40
Identities = 54/349 (15%), Positives = 94/349 (26%), Gaps = 125/349 (35%)
Query: 944 TRPKTKSTDS-SKSLLTDIVEGTPTT-----------------ETSTEYVFDSEESEESD 985
TRP T S S LL PT E + + D E + ++
Sbjct: 6 TRPLTLSHGSLEHVLLV------PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 986 --------VDHVDDSDTVKTKVPRMKAIL----SQLLPTN-----VPSLPISNSLVEAQQ 1028
V + + V + L + L N L N +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 1029 HHTL-----ALGCS-VPVVHSSKS-LLTDIVEGTPTTET-------STEYVFDSEESEES 1074
+ A + P S S L + EG + +Y F+ E
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FE----ELR 174
Query: 1075 DVDHVDDSDTVKTKVPRMKAILSQLLPTNVPSLPISNSLVEAQQHHTLALGCSV------ 1128
D+ T V + ++ L + + ++A++ T G ++
Sbjct: 175 DL-----YQTYHVLVGDLIKFSAETL------SELIRTTLDAEKVFTQ--GLNILEWLEN 221
Query: 1129 PVVVYEQEPSS--IISYALS---SFDYQYKLEELKAAHEIETNECKIPHIDIKFSDTAAN 1183
P P ++S +S Q AH + T K+
Sbjct: 222 P----SNTPDKDYLLSIPISCPLIGVIQ-------LAHYVVT--AKLLGFT--------- 259
Query: 1184 FSVKMYFADLFAELRKFS-CPEG------------EESFIRSLSRCIRW 1219
+L + L+ + +G ESF S+ + I
Sbjct: 260 ------PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.5 bits (91), Expect = 0.002
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 12/40 (30%)
Query: 497 ENETGKKCD--LRKYFPDNIYWSAQLDPAAPIVKNETPVE 534
E + KK L+ Y D SA PA I T +E
Sbjct: 18 EKQALKKLQASLKLYADD----SA---PALAI--KAT-ME 47
Score = 35.7 bits (81), Expect = 0.043
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 996 KTKVPRMKAILSQLLPTNVPSLPISNSLVE 1025
K + +++A L + P+L I + +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI-KATME 47
Score = 35.7 bits (81), Expect = 0.043
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 1086 KTKVPRMKAILSQLLPTNVPSLPISNSLVE 1115
K + +++A L + P+L I + +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI-KATME 47
Score = 34.2 bits (77), Expect = 0.14
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 16/40 (40%)
Query: 562 KVRSSLALYRAAGGRLTPSSKKLSPPPTVAPPAPVSTKID 601
K+++SL LY S AP + ++
Sbjct: 24 KLQASLKLY-------ADDS---------APALAIKATME 47
Score = 29.9 bits (66), Expect = 3.6
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 11/38 (28%)
Query: 897 KQKVDDIQ--MKLTDPDVMNNLWNLEDSIVKLKRAVVE 932
KQ + +Q +KL D L +I +A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPAL-----AI----KATME 47
Score = 28.8 bits (63), Expect = 8.4
Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 2/17 (11%)
Query: 846 KQKVDDIQ--MKLTDPD 860
KQ + +Q +KL D
Sbjct: 19 KQALKKLQASLKLYADD 35
>2q8p_A Iron-regulated surface determinant E; helical backbone metal
receptor superfamily, metal transport; HET: HEM; 1.95A
{Staphylococcus aureus subsp} PDB: 2q8q_A*
Length = 260
Score = 36.6 bits (85), Expect = 0.039
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 252 RISALKPDIVLVQRNVARLAQESLQQLGIT-LVLNVKT-----TVLERIARCT 298
+ LKP VL + Q +QL + + + + ++
Sbjct: 55 AVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQF 107
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A
{Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E
1n4a_A* 1n4d_A
Length = 245
Score = 34.2 bits (79), Expect = 0.24
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 252 RISALKPDIVLVQRNV-ARLAQESLQQLGIT-LVLNVKT-----TVLERIARCT 298
RI ALKPD+V+ R A + L LGI + ++ + L ++A +
Sbjct: 52 RIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWS 105
>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor,
gibberellin, gibberellin signaling pathway, hydrolase,
nucleus, receptor, developmental protein; HET: GA3;
1.80A {Arabidopsis thaliana} PDB: 2zsi_A*
Length = 351
Score = 33.1 bits (76), Expect = 0.63
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 588 PTVAPPAPVSTKIDALQPSNHQRLPVLIYICRSPIHSPGFCVE 630
P A + +D +P + +PV+++ H F
Sbjct: 90 PAYADQEQPPSILDLEKPVDGDIVPVILF-----FHGGSFAHS 127
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET:
HEM; 2.40A {Pseudomonas aeruginosa}
Length = 283
Score = 32.7 bits (75), Expect = 0.65
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 245 YLRNV-VARISALKPDIVLVQRNV-ARLAQESLQQLGITLV-LNVKTTV------LERIA 295
Y R + + AL+PDI++ + + L+ G+ + L+ K + L+++
Sbjct: 46 YQRQLAAEGVLALRPDILIGTEEMGPPPVLKQLEGAGVRVETLSAKPDLEALESNLKKLG 105
Query: 296 RCT 298
Sbjct: 106 DWL 108
>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia
eriantha} PDB: 2o7v_A
Length = 338
Score = 32.7 bits (75), Expect = 0.74
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 26/84 (30%)
Query: 562 KVRSSLALYRAAGGRLTPSSKKLSPPPTVAPPAPVSTK---IDA------------LQPS 606
+ + R T P +PV TK ++
Sbjct: 25 VLNPDRTITRPIQIPSTA------ASPDPTSSSPVLTKDLALNPLHNTFVRLFLPRHALY 78
Query: 607 NHQRLPVLIYICRSPIHSPGFCVE 630
N +LP+++Y H GF +
Sbjct: 79 NSAKLPLVVY-----FHGGGFILF 97
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha
beta protein, rigid helical backbon substrate-free, heme
transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Length = 255
Score = 31.8 bits (73), Expect = 1.3
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 245 YLRNVVA-RISALKPDIVLVQRNV-ARLAQESLQQLGITLV-LNVKTTV------LERIA 295
Y+R + A I A+KP ++LV L + G+ +V + +TT + +A
Sbjct: 46 YMRTLNAEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVA 105
Query: 296 RCT 298
Sbjct: 106 TAL 108
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia
sepium} SCOP: d.124.1.1
Length = 212
Score = 31.6 bits (71), Expect = 1.3
Identities = 27/159 (16%), Positives = 43/159 (27%), Gaps = 34/159 (21%)
Query: 653 YCFRRDYKCPSATCLIPTLEHERWFIHG------NGSVCVGLCEIENRPPEAYDERII-- 704
C CP+ C +E + I G +G+ YD+ I
Sbjct: 18 ECLSVKDSCPTNACSRSEVETG-FTIKGLWPDYDDGT------WPSCCEGAKYDQNEISI 70
Query: 705 ----MWNWCPSCKQVSSILPMSSDTWRLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQVH 760
+ + PS SS S D L + K +C+ + Q
Sbjct: 71 LSNDLSKYWPSYSCPSSSACGSFDAS------DLAYEWA------KHGTCSSPVLGNQYE 118
Query: 761 YF--AYNNIVASFIYTRIKLYEVCIPSTTLKKSLSTFDK 797
YF I + +PS T + +
Sbjct: 119 YFSTTLMLYFKYNISEILSESGY-LPSNTAEYKVEGIMS 156
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme
transport, transport protein; HET: HEM; 2.05A {Shigella
dysenteriae} PDB: 2rg7_A
Length = 256
Score = 31.4 bits (72), Expect = 1.7
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 245 YLRNV-VARISALKPDIVLVQRNV-ARLAQESLQQLGITLVL 284
Y + + I +L+PD V+ ++ ++ + L+ + +V
Sbjct: 46 YWKQLSSEGILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVT 87
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding
protein, MOLY binding protein, metal transport; 1.50A
{Haemophilus influenzae} PDB: 3psa_A
Length = 326
Score = 30.8 bits (70), Expect = 3.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 252 RISALKPDIVLVQRNVARLAQESLQQLGITLV 283
+ ALKPD+V V + + + I +V
Sbjct: 79 SLLALKPDVVFVTNYAPSEMIKQISDVNIPVV 110
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 29.6 bits (66), Expect = 4.7
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 652 KYCFRRDY--KCPSATCLIPTLEHERWFIHGNGSVCVGLCEIENRPPEAYDERIIMWNWC 709
K C+ + Y K TL ++ G N +++ + C
Sbjct: 59 KSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGC 118
Query: 710 PSCKQ 714
P C Q
Sbjct: 119 PRCGQ 123
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 29.9 bits (68), Expect = 8.1
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 673 HERWFIHGNGSV---CVG-LCEIENRPPEAYDERIIMWNWCPSCKQVSSILPMSSDTWRL 728
+ + GNG V C+G L E P+AYD R WN + LP+ + W+L
Sbjct: 26 GDGFIECGNGQVVTWCIGHLLEQA--QPDAYDSRYARWNL--------ADLPIVPEKWQL 75
>1w33_A BbcrAsp-1; complement regulator, complement regulator acquiring
surface protein, LYME borreliosis, factor H binding,
TICK; 2.7A {Borrelia burgdorferi} PDB: 1w3z_A
Length = 181
Score = 28.8 bits (64), Expect = 9.3
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 32/162 (19%)
Query: 353 ASRKELMKVKRVTSFMIYVLYNWKLESSLLMDEQAYVIQTKKPILQSPSDSVADIIPKPS 412
MK+KR +Y SSL ++ I+ K IL+
Sbjct: 47 IDEDIQMKIKR----TLY--------SSLDYKKE--NIEKLKEILE-----------ILK 81
Query: 413 TDEKHTRSNSESTGDVKVAIQKPASQSIQDASDPLQSEPNVTSPMSPQDLHLAVDNVPT- 471
+ +H + IQ Q+++ + +++ S + L + + +
Sbjct: 82 KNSEHYNIIGRLIYHISWGIQFQIEQNLELIQNGVENLSQEES----KSLLMQIKSNLEI 137
Query: 472 -NSFRKALDDIILSVSPTIKYTVPYLENETGKKC-DLRKYFP 511
+K L++ + + + L K D P
Sbjct: 138 KQRLKKTLNETLKVYNQNTQDNEKILAEHFNKYYKDFDTLKP 179
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 29.5 bits (67), Expect = 9.5
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 154 LAEKIIEEVKPDQNIDSFDIRQYVQIKKVD 183
L+ K+ V N FD ++ K V
Sbjct: 57 LSSKVAAFVPYGSNPGEFDEALWLNSKAVA 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.381
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 20,140,538
Number of extensions: 1190786
Number of successful extensions: 2345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2232
Number of HSP's successfully gapped: 66
Length of query: 1390
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1285
Effective length of database: 3,770,088
Effective search space: 4844563080
Effective search space used: 4844563080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (27.9 bits)