RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18037
(1390 letters)
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 120 bits (302), Expect = 6e-32
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)
Query: 189 DSFVVSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQ 241
DS V+ G++ +K+V+H M + NP+I++L ++ Y++ E + ++
Sbjct: 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60
Query: 242 ETEYLRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRAD 301
E EY+ + I LKPD+V+ ++ ++ LAQ L + +T + V+ T RIAR A
Sbjct: 61 EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 120
Query: 302 LVYSVDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFPHKGSTVILRG 352
+V + L +KK+ D + F C P K T++LRG
Sbjct: 121 IVSRPEELREDDVGTGAGLLEIKKIGD--EYFTFITDCKDP-KACTILLRG 168
>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta,
PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 114 bits (286), Expect = 1e-27
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 1250 EESFIRSLSRCIRWEARG-GKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKN 1308
++ + S++R + G+ G+ F T D RF++K +S ++ Y+ ++
Sbjct: 81 DQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVE 140
Query: 1309 CFENSSPTLLCKIFGVFRVICQNNNSKTRSNLLVMENLFHSR-NIKLRFDLKGSLRNRLV 1367
C N TLL + G++R+ + ++V N+F R + ++DLKGS R
Sbjct: 141 CHGN---TLLPQFLGMYRLTVDG----VETYMVVTRNVFSHRLTVHRKYDLKGSTVAREA 193
Query: 1368 DTSLDSMDS 1376
+ D
Sbjct: 194 SDKEKAKDL 202
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 106 bits (267), Expect = 2e-27
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 10/155 (6%)
Query: 195 GIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEYLR 247
G+V K V H M + N KI ++ A+ ++ E L + QE + L+
Sbjct: 2 GVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLK 61
Query: 248 NVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVD 307
++V I+ ++V VQ+ + LAQ L + GI V VK + +E++A+ T A +V +V
Sbjct: 62 DMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVK 121
Query: 308 VLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFP 342
L + LG +KL+ + ++F EGC P
Sbjct: 122 DLTPE-DLGYAEVVEERKLAG--ENMIFVEGCKNP 153
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Length = 152
Score = 102 bits (255), Expect = 9e-26
Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 195 GIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVE-------GKLLSLEPVIMQETEYLR 247
GI+ K H M + + KI +L + ++ E ++ + QE LR
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLR 60
Query: 248 NVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYSVD 307
+V +I ++ ++V+ Q+ + +AQ L + GI V VK + ++++A+ T A +V ++D
Sbjct: 61 EMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTID 120
Query: 308 VLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGCAFP 342
+ + LGT R K+ + + F GC P
Sbjct: 121 EISS-SDLGTAERVEQVKVGE--DYMTFVTGCKNP 152
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma
acidophilum, alpha chain [TaxId: 2303]}
Length = 152
Score = 100 bits (249), Expect = 6e-25
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 10/154 (6%)
Query: 193 VSGIVHSKNVSHKSMLTALNNPKILILQCAIVYQRVEGK-------LLSLEPVIMQETEY 245
+SGIV K H M + N KI ++ A+ ++ E + ++ + QET
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 246 LRNVVARISALKPDIVLVQRNVARLAQESLQQLGITLVLNVKTTVLERIARCTRADLVYS 305
+ +V +I ++VL Q+ + +AQ L + GI V VK + +E++A+ T A +V
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 306 VDVLLNQIHLGTCSRFSVKKLSDSNKTLMFFEGC 339
+D L LG +K+ D + F GC
Sbjct: 121 LDD-LTPSVLGEAETVEERKIGD--DRMTFVMGC 151
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 107
Score = 53.4 bits (128), Expect = 4e-09
Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 146 SWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHK 205
S ++ LA + +++V ++ ++ +K G +S +V +
Sbjct: 24 SHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVKAVTILI---RG 80
Query: 206 SMLTALNNPKILILQCAIVYQRVE 229
++ + + V + V
Sbjct: 81 GTEHVIDEVERALEDAVKVVKDVM 104
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 105
Score = 44.1 bits (104), Expect = 7e-06
Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 146 SWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSGIVHSKNVSHK 205
+ L K + V ++ + +++ K +GG+ ND+ +S +
Sbjct: 21 LSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISAVSILI---RG 77
Query: 206 SMLTALNNPKILILQCAIVYQRVE 229
++ + + V +
Sbjct: 78 GTDHVVSEVERALNDAIRVVAITK 101
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 37.9 bits (88), Expect = 0.001
Identities = 7/78 (8%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 146 SWASVILPLAEKIIEEVKPDQNIDSFDIRQYVQIKKVDGGTRNDSFVVSG-----IVHSK 200
+ ++ + ++ V ++ + +Q+ K GG +D+ +++ +
Sbjct: 23 VAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINKAVSILVRGET 82
Query: 201 NVSHKSMLTALNNPKILI 218
M ++ + ++
Sbjct: 83 EHVVDEMERSITDSLHVV 100
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 30.9 bits (69), Expect = 0.57
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 21/108 (19%)
Query: 617 ICRSPIHSPGFCVEPCTINMDFYARNDI--PLGSFLEKYCFRRDYKCPSATCLIPT---L 671
I + P+ P C EP N+ + P + E + P P +
Sbjct: 13 IKKDPV--PYICAEPLPSNI-LEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYM 69
Query: 672 EHERWFIHGNGSVCVGLCEIENRPPEAYDERIIMWNWCPSCKQVSSIL 719
N +C+ + + W P+ VS+IL
Sbjct: 70 ITPNGRFKCNTRLCLSITDFHPD------------TWNPAWS-VSTIL 104
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine
5'-diphospho)-2C-methyl-D-erythritol kinase IspE
{Thermus thermophilus [TaxId: 274]}
Length = 120
Score = 29.7 bits (66), Expect = 0.89
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 638 FYARNDIPLGSFLEKYCFRRDYKCPSATCLIPTLEHERWFIHGNGSVCVGLCEIENRPPE 697
+ P + LE FR + + L + G+GS GL E +
Sbjct: 42 LARGEEPPYWNSLEGPAFRLFPELKEVRGRMRALGLRGVLMSGSGSAFFGLAEGPDHARR 101
Query: 698 AYDE-RIIMWNWC 709
A + R W
Sbjct: 102 AAEALRAWGRAWA 114
>d2olra2 c.109.1.1 (A:6-227) Phosphoenolpyruvate (PEP) carboxykinase
(ATP-oxaloacetate carboxy-lyase) {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 30.3 bits (68), Expect = 1.3
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 9/89 (10%)
Query: 681 NGSVCVGLCEIENRPPEAYDERIIM-------WNWCPSCKQVSSILPMSSDTWRLSLAKF 733
G+V V R P+ D+ I+ + W K + P+S +TW+
Sbjct: 47 LGAVAVDTGIFTGRSPK--DKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLV 104
Query: 734 LDLRFNCVPLGCKTASCTHHLHQEQVHYF 762
+ + V +
Sbjct: 105 TRQLSGKRLFVVDAFCGANPDTRLSVRFI 133
>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 311
Score = 30.5 bits (67), Expect = 1.5
Identities = 23/169 (13%), Positives = 41/169 (24%), Gaps = 25/169 (14%)
Query: 565 SSLALYRAAGGRLTPSSKKLSPPPTVAPPAPVSTKIDALQPSNHQRLPVLIYICRSP--- 621
SS YR A R+ ++ V D + + V +Y +
Sbjct: 27 SSAREYREAINRIYEE-----RNRQLSQHERVERVEDRTIKGRNGDIRVRVYQQKPDSPV 81
Query: 622 ---IHSPGFCVEPCTINMDFYARNDIPLGSFLEKYCFRRDYKCPSATCLIPTLEHERWFI 678
H GF + + R S DY+ +
Sbjct: 82 LVYYHGGGFVICSIESHDALCRRIARLSNST----VVSVDYRLAPEHKFPAAVYDCYDAT 137
Query: 679 HGNGSVCVGLCEIENRPPEAYD-ERIIMWNWCPSCKQVSSILPMSSDTW 726
EN D +I + +++ M+ D+
Sbjct: 138 K---------WVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSG 177
>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 135
Score = 28.1 bits (61), Expect = 3.6
Identities = 9/100 (9%), Positives = 26/100 (26%), Gaps = 6/100 (6%)
Query: 585 SPPPTVAPPAPVSTKIDALQPSNHQRLPVL------IYICRSPIHSPGFCVEPCTINMDF 638
PP ++ + + + R+ V + R + + + D
Sbjct: 9 KNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDL 68
Query: 639 YARNDIPLGSFLEKYCFRRDYKCPSATCLIPTLEHERWFI 678
Y + P+ ++ T + + +
Sbjct: 69 YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSL 108
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 28.5 bits (62), Expect = 3.6
Identities = 10/125 (8%), Positives = 28/125 (22%), Gaps = 3/125 (2%)
Query: 703 IIMWNWCPSCKQVSSILPMSSDTWRLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQVHYF 762
++ + + + S + + + + + F
Sbjct: 48 VVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPF 107
Query: 763 AYNNIVASFIYTRIKLYEVCIPSTTLKKSLSTFDKNGLFEEVKKWSLMGQEVFSIVLEKL 822
+++ + V + D N + V + VL L
Sbjct: 108 ---PMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVL 164
Query: 823 HTNQT 827
Q+
Sbjct: 165 DALQS 169
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 27.6 bits (60), Expect = 5.3
Identities = 6/66 (9%), Positives = 14/66 (21%)
Query: 707 NWCPSCKQVSSILPMSSDTWRLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQVHYFAYNN 766
CP C++ + L + + + + S +
Sbjct: 36 KTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQ 95
Query: 767 IVASFI 772
I
Sbjct: 96 INVRCD 101
>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 240
Score = 28.1 bits (62), Expect = 6.8
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 505 DLRKYFPDNIYWSAQLDPAAPIVKNETPVETI 536
D+ K + + W+A ++ + N P+E I
Sbjct: 207 DVLKVIANAVRWAAPVNRGEIVFGNVKPLEPI 238
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 207
Score = 27.8 bits (61), Expect = 7.6
Identities = 14/135 (10%), Positives = 33/135 (24%), Gaps = 7/135 (5%)
Query: 1206 EESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEKGEESFIRSLSRCIRWEA 1265
+IR L+ I+ S S D I + + + + + +
Sbjct: 15 IRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVE--- 71
Query: 1266 RGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFAPNYYNYVKNCFENSSPTLLCKIFGVF 1325
+ L D + ++A + + S +
Sbjct: 72 ---MTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS-KPGAALYL 127
Query: 1326 RVICQNNNSKTRSNL 1340
+ I + + L
Sbjct: 128 QSIGEGFKEAVQYVL 142
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.381
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,912,726
Number of extensions: 229787
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 22
Length of query: 1390
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1293
Effective length of database: 1,075,786
Effective search space: 1390991298
Effective search space used: 1390991298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)