BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18038
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 79.7 bits (195), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLILG-GLGSWQPLGHVDFYPNGGRM 113
GLDPAGP F+ + RLD SDA FVDVIH++ ++ G G Q +GH+DF+PNGG+
Sbjct: 178 GLDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKE 237
Query: 114 QKGCTNLFVGAVSDI--LW-----FQFSDHLRNLGW 142
GC + ++DI +W F +HLR+ +
Sbjct: 238 MPGCKKNVLSTITDIDGIWEGIGGFVSCNHLRSFEY 273
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLILG-GLGSWQPLGHVDFYPNGGRM 113
GLDPAGP F+ + RLD SDA FVDVIH++ ++ G G Q +GH+DF+PNGG+
Sbjct: 176 GLDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKE 235
Query: 114 QKGCTNLFVGAVSDI--LW-----FQFSDHLRNLGW 142
GC + ++DI +W F +HLR+ +
Sbjct: 236 MPGCKKNVLSTITDIDGIWEGIGGFVSCNHLRSFEY 271
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLILG-GLGSWQPLGHVDFYPNGGRM 113
GLDPA P F+ RLD SDA+FVDVIH++G ++ G G Q +GH+DF+PNGG
Sbjct: 175 GLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDFFPNGGVE 234
Query: 114 QKGCTNLFVGAVSDI--LW-----FQFSDHLRN 139
GC + + DI +W F +HLR+
Sbjct: 235 MPGCKKNILSQIVDIDGIWEGTRDFAACNHLRS 267
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLILG-GLGSWQPLGHVDFYPNGGRM 113
GLDPA P F+ RLD SDA+FVDVIH++ +I G G Q +GH+DF+PNGG+
Sbjct: 175 GLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDAAPIIPNLGFGMSQTVGHLDFFPNGGKQ 234
Query: 114 QKGCTNLFVGAVSDI--LW-----FQFSDHLRNLGW 142
GC + + DI +W F +HLR+ +
Sbjct: 235 MPGCQKNILSQIVDIDGIWEGTRDFVACNHLRSYKY 270
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLILG-GLGSWQPLGHVDFYPNGGRM 113
GLDPA P F+ RLD SDAQFVDVIH++ ++ G G Q +GH+DF+PNGG+
Sbjct: 176 GLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGKQ 235
Query: 114 QKGCTNLFVGAVSDI--LWFQFSDHL 137
GC DI +W D+L
Sbjct: 236 MPGCKRSSFSTFIDINGIWQGAQDYL 261
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLILG-GLGSWQPLGHVDFYPNGGRM 113
GLDPA P F+ RLD SDAQFVDVIH++ I G G Q GH+DF+PNGG+
Sbjct: 175 GLDPAEPCFQGTPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGGKE 234
Query: 114 QKGCTNLFVGAVSDI--LW-----FQFSDHLRNLGW 142
GC + + DI +W F +HLR+ +
Sbjct: 235 MPGCQKNVLSQIVDIDGIWQGTRDFAACNHLRSYKY 270
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLI-LGGLGSWQPLGHVDFYPNGGRM 113
GLDPA P F+ RLD SDA FVDVIH++ +I G G Q +GH+DF+PNGG+
Sbjct: 176 GLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKE 235
Query: 114 QKGCTNLFVGAVSDI--LW-----FQFSDHLRNLGW 142
GC + + DI +W F +HLR+ +
Sbjct: 236 MPGCQKNILSTIVDINGIWEGTQNFVACNHLRSYKY 271
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 72.8 bits (177), Expect = 7e-14, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLI-LGGLGSWQPLGHVDFYPNGGRM 113
GLDP FES RLD SDA FVDVIH++ LI G G+ Q +GH+DF+PNGG
Sbjct: 200 GLDPVEASFESTPEEVRLDPSDADFVDVIHTDAAPLIPFLGFGTNQQMGHLDFFPNGGES 259
Query: 114 QKGCTNLFVGAVSDI--LW-----FQFSDHLRN 139
GC + + D+ +W F +HLR+
Sbjct: 260 MPGCKKNALSQIVDLDGIWAGTRDFVACNHLRS 292
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLI-LGGLGSWQPLGHVDFYPNGGRM 113
GLDP F+ RLD +DA FVDVIH++ LI G G+ Q +GH+DF+PNGG
Sbjct: 175 GLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEE 234
Query: 114 QKGCTNLFVGAVSDI--LW-----FQFSDHLRN 139
GC + + D+ +W F +HLR+
Sbjct: 235 MPGCKKNALSQIVDLDGIWEGTRDFVACNHLRS 267
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLILG-GLGSWQPLGHVDFYPNGGRM 113
GLDPA P F+ RLD SDA+FVDVIH++ ++ G G Q +GH+DF+PNGG+
Sbjct: 176 GLDPAEPYFQDTPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKD 235
Query: 114 QKGC 117
GC
Sbjct: 236 MPGC 239
>pdb|1KI0|A Chain A, The X-Ray Structure Of Human Angiostatin
Length = 253
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 54 PGLDPAGPLFESQDPRSRLDSSD--AQFVDVIHSNGEN 89
P DP GP + DP R D D + +H +GEN
Sbjct: 56 PDNDPQGPWCYTTDPEKRYDYCDILECEEECMHCSGEN 93
>pdb|2DOH|X Chain X, The X-Ray Crystallographic Structure Of The Angiogenesis
Inhibitor, Angiostatin, Bound A To A Peptide From The
Group A Streptococcal Surface Protein Pam
pdb|2DOI|X Chain X, The X-Ray Crystallographic Structure Of The Angiogenesis
Inhibitor, Angiostatin, Bound To A Peptide From The
Group A Streptococcus Protein Pam
pdb|2DOI|A Chain A, The X-Ray Crystallographic Structure Of The Angiogenesis
Inhibitor, Angiostatin, Bound To A Peptide From The
Group A Streptococcus Protein Pam
Length = 234
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 54 PGLDPAGPLFESQDPRSRLDSSD--AQFVDVIHSNGEN 89
P DP GP + DP R D D + +H +GEN
Sbjct: 56 PDNDPQGPWCYTTDPEKRYDYCDILECEEECMHCSGEN 93
>pdb|2JKI|A Chain A, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
pdb|2JKI|B Chain B, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
pdb|2JKI|C Chain C, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
Length = 223
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 40 ILSNTFYSN----LRTMFPGLDPA--GPLFESQDPRSRLDSSDAQFVDVIHSNGEN---L 90
++ NTFYSN LR + A FES +S+LD+ F+ +I + +
Sbjct: 26 LIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKATSTLTI 85
Query: 91 ILGGLGSWQPLGHVDFYPNGGRMQKGCTNLFVGAVS 126
+ G+G + D N G + + T F+ A++
Sbjct: 86 VDSGIG----MTKSDLVNNLGTIARSGTKEFMEALA 117
>pdb|2XCM|A Chain A, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
Domain
pdb|2XCM|B Chain B, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
Domain
Length = 214
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 40 ILSNTFYSN----LRTMFPGLDPA--GPLFESQDPRSRLDSSDAQFVDVIHSNGEN---L 90
++ NTFYSN LR + A FES +S+LD+ F+ +I + +
Sbjct: 23 LIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKATSTLTI 82
Query: 91 ILGGLGSWQPLGHVDFYPNGGRMQKGCTNLFVGAVS 126
+ G+G + D N G + + T F+ A++
Sbjct: 83 VDSGIG----MTKSDLVNNLGTIARSGTKEFMEALA 114
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 54 PGLDPAGPLFESQDPRSRLDSSDAQFV--DVIHSNGEN 89
P DP GP + DP R D D + +H +GEN
Sbjct: 136 PDNDPQGPWCYTTDPEKRYDYCDILECEEECMHCSGEN 173
>pdb|1AVA|C Chain C, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|D Chain D, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|3BX1|D Chain D, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|C Chain C, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
Length = 181
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 38 FLILSNTFYSNLRTMFPGLDPAGPLFESQDPRSRLD 73
+++ +N + TM PG PLF SQDP + D
Sbjct: 21 YVLSANRAHGGGLTMAPGHGRHCPLFVSQDPNGQHD 56
>pdb|2IWT|B Chain B, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex
With The Target Protein Basi
Length = 189
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 38 FLILSNTFYSNLRTMFPGLDPAGPLFESQDPRSRLD 73
+++ +N + TM PG PLF SQDP + D
Sbjct: 29 YVLSANRAHGGGLTMAPGHGRHCPLFVSQDPNGQHD 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,410,418
Number of Sequences: 62578
Number of extensions: 175471
Number of successful extensions: 316
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 20
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)