RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18038
(146 letters)
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 102 bits (256), Expect = 7e-27
Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLILG-GLGSWQPLGHVDFYPNGGRM 113
GLDPA P F+ RLD SDAQFVDVIH++ ++ G G Q +GH+DF+PNGG+
Sbjct: 176 GLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGKQ 235
Query: 114 QKGCTNLFVGAVSDILWFQFS-------DHLR 138
GC DI +HL+
Sbjct: 236 MPGCKRSSFSTFIDINGIWQGAQDYLACNHLK 267
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 101 bits (252), Expect = 3e-26
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 11 ASSIFRLYVQSGRGFSRVVLI-YSACSSFLILSNTFYSNLRTMFPGLDPAGPLFESQDPR 69
A + L S+V LI +S + + + L + LDP F+
Sbjct: 131 AQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPGLGRITG-LDPVEASFQGTPEE 189
Query: 70 SRLDSSDAQFVDVIHSNGENLI-LGGLGSWQPLGHVDFYPNGGRMQKGCTNLFVGAVSDI 128
RLD +DA FVDVIH++ LI G G+ Q +GH+DF+PNGG GC + + D+
Sbjct: 190 VRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCKKNALSQIVDL 249
Query: 129 LWF 131
Sbjct: 250 DGI 252
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 99.0 bits (246), Expect = 2e-25
Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 11 ASSIFRLYVQSGRGFSRVVLI-YSACSSFLILSNTFYSNLRTMFPGLDPAGPLFESQDPR 69
A + L + G V LI +S + + + GLDPA P F+
Sbjct: 131 AFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAEPCFQGLPEE 190
Query: 70 SRLDSSDAQFVDVIHSN-GENLILGGLGSWQPLGHVDFYPNGGRMQKGCTNLFVGAVSDI 128
RLD SDA FVDVIH++ + G G Q +GH+DF+PNGG+ GC + + DI
Sbjct: 191 VRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQKNILSTIVDI 250
Query: 129 LW-------FQFSDHLR 138
F +HLR
Sbjct: 251 NGIWEGTQNFVACNHLR 267
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 97.8 bits (243), Expect = 5e-25
Identities = 39/92 (42%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 55 GLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLILG-GLGSWQPLGHVDFYPNGGRM 113
GLDPA P F+ RLD SDAQFVDVIH++ I G G Q GH+DF+PNGG+
Sbjct: 175 GLDPAEPCFQGTPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGGKE 234
Query: 114 QKGCTNLFVGAVSDILWFQFS-------DHLR 138
GC + + DI +HLR
Sbjct: 235 MPGCQKNVLSQIVDIDGIWQGTRDFAACNHLR 266
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 97.4 bits (242), Expect = 6e-25
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 11 ASSIFRLYVQSGRGFSRVVLI-YSACSSFLILSNTFYSNLRTMFPGLDPAGPLFESQDPR 69
A + L V +I +S + + + L GLDPA P F+
Sbjct: 131 AYLVQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAEPYFQDTPEE 190
Query: 70 SRLDSSDAQFVDVIHSNGENLILG-GLGSWQPLGHVDFYPNGGRMQKGCTNLFVGA 124
RLD SDA+FVDVIH++ ++ G G Q +GH+DF+PNGG+ GC
Sbjct: 191 VRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKDMPGCKTGISCN 246
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.12
Identities = 21/163 (12%), Positives = 48/163 (29%), Gaps = 34/163 (20%)
Query: 1 MESAKSLVEQASSIFRLYVQSGRGFSRVVLIYSACSSFLILS----NTFYSNLR------ 50
+ + + + + G + + C S+ + F+ NL+
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 51 -------TMFPGLDPAG--PLFESQDPRSRLDSSDAQFVDVIHSNGEN---LILGGLGSW 98
+ +DP S + + R+ S A+ ++ S L+L + +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 99 QPLGHVDFYPNGGRMQKGCTNLFV---GAVSDILWFQFSDHLR 138
+ + C L V+D L + H+
Sbjct: 257 KAWNAFNL---------SCKILLTTRFKQVTDFLSAATTTHIS 290
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET:
SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A*
2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Length = 481
Score = 28.4 bits (62), Expect = 0.94
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 54 PGLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLILGGLGSWQPLGHVDFYPNG 110
GL P G S + + D +G +LIL G + P+G
Sbjct: 12 SGLVPRGSHMSGSGSGSGTALTPSYLKD---DDGRSLILRGFNTA---SSAKSAPDG 62
>1c9b_A General transcription factor IIB; protein-DNA complex,
cyclin-like fold, helix-turn-helix, transcription/DNA
complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2
PDB: 1tfb_A 2phg_A 1vol_A*
Length = 207
Score = 27.7 bits (61), Expect = 1.2
Identities = 6/37 (16%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 5 KSLVEQASSIFRLYVQSG--RGFSRVVL----IYSAC 35
+++V++ +++F+ + +G + + +Y AC
Sbjct: 23 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIAC 59
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation,
protein-protein interaction, PR kinase, cell cycle,
transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP:
d.144.1.7
Length = 346
Score = 26.8 bits (60), Expect = 3.0
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 46 YSNLRTMFPGLDPAG-PLFESQ---DPRSRLDSSDA 77
L +F L + +P +R+ ++ A
Sbjct: 254 GIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQA 289
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP:
d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Length = 939
Score = 26.3 bits (57), Expect = 4.2
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 5 KSLVEQASSIFRLYVQSGRGFSRVVLIYSACSSFLILSNTFYSNLRT 51
K+ S++ ++V +G S I+ FY+ LRT
Sbjct: 726 KAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQ--IVQPWFYNQLRT 770
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle,
phosphorylation, ATP-BIN cell division, disease
mutation, kinase; 3.00A {Homo sapiens}
Length = 308
Score = 26.4 bits (59), Expect = 4.4
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 46 YSNLRTMFPGLDPAG-PLFESQ---DPRSRLDSSDA 77
++++ P ++ +G L +P R+ + A
Sbjct: 259 PRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRA 294
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural
genomics, structural consortium, SGC, transferase; HET:
FEF; 2.40A {Homo sapiens}
Length = 324
Score = 26.0 bits (58), Expect = 4.7
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 46 YSNLRTMFPGLDPAGP-LFESQ---DPRSRLDSSDA 77
L + P LD G L + R+R+ + DA
Sbjct: 244 AEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDA 279
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET:
DKI; 1.53A {Homo sapiens}
Length = 331
Score = 25.6 bits (57), Expect = 7.5
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 4/36 (11%)
Query: 46 YSNLRTMFPGLDPAGPLFESQ----DPRSRLDSSDA 77
L +P L + DP R ++
Sbjct: 269 REPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAEL 304
>3niz_A Rhodanese family protein; structural genomics, structural genomics
consortium, SGC, phosphotransferase, cyclin dependent
kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB:
2qkr_A*
Length = 311
Score = 25.6 bits (57), Expect = 8.0
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 46 YSNLRTMFPGLDPAGP-LFESQ---DPRSRLDSSDA 77
++ PG G L + DP R+ + DA
Sbjct: 263 KKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDA 298
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase,
cell cycle, inhibition, cyclin-dependent kinase, cancer,
ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A*
2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A*
1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A*
1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Length = 299
Score = 25.2 bits (56), Expect = 9.0
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 46 YSNLRTMFPGLDPAG-PLFESQ---DPRSRLDSSDA 77
+ + P LD G L DP R+ + A
Sbjct: 246 RQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAA 281
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET:
D15; 2.40A {Homo sapiens}
Length = 311
Score = 25.2 bits (56), Expect = 9.5
Identities = 7/36 (19%), Positives = 8/36 (22%), Gaps = 4/36 (11%)
Query: 46 YSNLRTMFPGLDPAGPLFESQ----DPRSRLDSSDA 77
L FP + DP RL
Sbjct: 247 MEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQL 282
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.428
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,176,269
Number of extensions: 115004
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 25
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)