RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18038
         (146 letters)



>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 338

 Score = 91.4 bits (226), Expect = 2e-23
 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 54  PGLDPAGPLFESQDPRSRLDSSDAQFVDVIHSN-GENLILGGLGSWQPLGHVDFYPNGGR 112
            GLDPA P F+      RLD SDA FVDVIH++    +   G G  Q +GH+DF+PNGG+
Sbjct: 175 TGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGK 234

Query: 113 MQKGCTNLFVGAVSDILWF 131
              GC    +  + DI   
Sbjct: 235 EMPGCQKNILSTIVDINGI 253


>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
           {Dog (Canis familiaris) [TaxId: 9615]}
          Length = 337

 Score = 88.3 bits (218), Expect = 2e-22
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 53  FPGLDPAGPLFESQDPRSRLDSSDAQFVDVIHSNGENLILG-GLGSWQPLGHVDFYPNGG 111
             GLDP    F+      RLD +DA FVDVIH++   LI   G G+ Q +GH+DF+PNGG
Sbjct: 173 ITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGG 232

Query: 112 RMQKGCTNLFVGAVSDILWF 131
               GC    +  + D+   
Sbjct: 233 EEMPGCKKNALSQIVDLDGI 252


>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 345

 Score = 27.2 bits (60), Expect = 0.68
 Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 15  FRLYVQSGRGFSRVVLIYSACSS----FLILSNTFYSNLRTMFPGLDPAGPLFESQDPRS 70
           F  Y ++ R    +V  Y    +     + ++      +  +   +D     + S+  R 
Sbjct: 78  FMAYAKTHRDCVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGDMAYISKRVRE 137

Query: 71  RLDSSDAQFVDVIHSNG--ENLILGGLGSWQPLGH-VDFYPNGGRMQKGCTNLFVGAVSD 127
           +LD +      +  SN   EN IL    + +     +D +  G ++        +GAV  
Sbjct: 138 QLDEAGFTEAKIYASNDLDENTIL----NLKMQKSKIDVWGVGTKLITAYDQPALGAVFK 193

Query: 128 ILWFQFSD 135
           ++  +  D
Sbjct: 194 LVSIEGED 201


>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein
          vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 54

 Score = 24.3 bits (53), Expect = 1.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 46 YSNLRTMFPGLDP 58
           + L+ MFP +DP
Sbjct: 16 LNTLQNMFPDMDP 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,262
Number of extensions: 21940
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 4
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)