BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18040
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 20 SSILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTGRG-----TLYLLTR 74
SSIL F C SYEK+ + +CF C + C MG+YAD+ G+ T+YL T
Sbjct: 274 SSILNPDGFLGYPCSSYEKFQQNDCFPCPE-EGCPKMGHYADQFEGKTATVEQTVYLNTG 332
Query: 75 DEEPF 79
D F
Sbjct: 333 DSGNF 337
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 SILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTGR 66
SIL F A C SY+ + CF C D C MG+YADK GR
Sbjct: 299 SILNPDGFAAYPCTSYKSFESDKCFPCPD-QGCPQMGHYADKFAGR 343
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 21 SILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTGR----GTL-YLLTRD 75
SIL F +C SY + CF C+ C MG+YAD+ GR G L YL T D
Sbjct: 274 SILNPDGFAGFSCASYSDFTANKCFPCSS-EGCPQMGHYADRFPGRTKGVGQLFYLNTGD 332
Query: 76 EEPF 79
F
Sbjct: 333 ASNF 336
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 20 SSILPRCNFPALACESYEKYLEGNCFNCTDPTK-CGNMGYYADKSTGR 66
SSIL F C SY+++ E CF C P K C MG++AD+ G+
Sbjct: 256 SSILNPEGFLGYPCASYDEFQESGCFPC--PAKGCPKMGHFADQYPGK 301
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 20 SSILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADK 62
SSIL F A C+SY+K+ E CF C C MG+YAD+
Sbjct: 274 SSILNPDGFLAYPCDSYDKFQENGCFPCP-AGGCPKMGHYADQ 315
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 20 SSILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTGR 66
SS+L F C SY+++ E CF C C MG+YAD+ G+
Sbjct: 274 SSVLNPDGFLGYPCASYDEFQESKCFPCP-AEGCPKMGHYADQFKGK 319
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 21 SILPRCNFPALACESYEKYLEGNCFNCTDPTK-CGNMGYYADKSTGRG-----TLYLLTR 74
SIL F C+SY + CF C P++ C MG+YAD+ G+ YL T
Sbjct: 274 SILNPDGFAGFPCDSYNVFTANKCFPC--PSEGCPQMGHYADRFPGKTNGVSQVFYLNTG 331
Query: 75 DEEPF 79
D F
Sbjct: 332 DASNF 336
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 20 SSILPRCNFPALACESYEKYLEGNCFNCTDPTK-CGNMGYYADKSTGR 66
SS+L F C SY+++ E CF C P + C MG+YAD+ G+
Sbjct: 276 SSVLNPDGFLGYPCASYDEFQESKCFPC--PAEGCPKMGHYADQFKGK 321
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 21 SILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADK 62
SIL F + C SY + CF C D C MG+YADK
Sbjct: 274 SILNPDGFASYPCASYRAFESNKCFPCPD-QGCPQMGHYADK 314
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 21 SILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTGRGT-----LYLLTRD 75
SI+ F C SY + CF C C MG+YAD+ G+ YL T D
Sbjct: 274 SIVNPDGFAGFPCASYNVFTANKCFPCPS-GGCPQMGHYADRYPGKTNDVGQKFYLDTGD 332
Query: 76 EEPF 79
F
Sbjct: 333 ASNF 336
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,487,590
Number of Sequences: 62578
Number of extensions: 86462
Number of successful extensions: 468
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 13
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)