Query psy18040
Match_columns 82
No_of_seqs 140 out of 761
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:57:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03230 lipo_lipase lipoprot 99.9 2.2E-24 4.9E-29 154.5 6.7 78 3-81 227-308 (442)
2 PF00151 Lipase: Lipase; Inte 99.9 2.5E-23 5.4E-28 144.8 3.5 73 6-79 253-331 (331)
3 cd00707 Pancreat_lipase_like P 99.8 1.6E-19 3.4E-24 122.7 6.3 67 7-75 208-275 (275)
4 PHA00731 hypothetical protein 32.3 40 0.00087 19.7 1.8 17 65-81 13-29 (96)
5 PF03223 V-ATPase_C: V-ATPase 26.7 19 0.00042 26.0 -0.2 20 12-31 294-317 (371)
6 PRK13736 conjugal transfer pro 25.1 82 0.0018 21.5 2.6 24 57-80 67-90 (245)
7 KOG3952|consensus 23.2 41 0.00088 23.3 0.8 29 4-32 96-124 (304)
8 PRK14746 RepA leader peptide T 23.0 44 0.00096 14.8 0.7 21 14-34 3-24 (26)
9 KOG2909|consensus 22.1 31 0.00068 25.0 0.1 21 12-32 297-321 (381)
10 PF08262 Lem_TRP: Leucophaea m 21.0 45 0.00098 11.5 0.4 6 54-59 2-7 (10)
11 cd01785 PDZ_GEF_RA Ubiquitin-l 20.3 51 0.0011 18.9 0.7 19 56-74 67-85 (85)
No 1
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.90 E-value=2.2e-24 Score=154.45 Aligned_cols=78 Identities=26% Similarity=0.462 Sum_probs=69.4
Q ss_pred ccCCceeecccc-HHHHHhhcCCC-CCceeeecCChhhhhcCCcccCCCCCCcccCCcccCCCC--CceeEEEecCCCCC
Q psy18040 3 SAKSLVEQASMK-TRKGESSILPR-CNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKST--GRGTLYLLTRDEEP 78 (82)
Q Consensus 3 ~~~~~~~CsH~R-~~yf~ESI~~~-~~F~a~~C~s~~~~~~g~C~~c~~~~~~~~MG~~~~~~~--~~G~~yl~T~~~~P 78 (82)
++.+.+.|||.| ++||+|||.++ ++|+|++|++|++|+.|.|.+|.. +.|+.|||++++.+ .+|+|||.|++++|
T Consensus 227 ~~~~~~~CsH~Ra~~~f~eSi~~~~~~f~a~~C~s~~~f~~g~C~~c~~-~~c~~mG~~~~~~~~~~~g~~yl~T~~~~P 305 (442)
T TIGR03230 227 NMDQLVKCSHERSIHLFIDSLLNEENPSMAYRCSSKEAFNKGLCLSCRK-NRCNKLGYEINKVRTKRSSKMYLKTREMMP 305 (442)
T ss_pred ccCcCccchhHHHHHHHHHHhcccCCCeeeEECCCHHHHhcCCCCCCCC-CCCceeCccccccccCCceEEEEEeCCCCC
Confidence 345678999999 99999999764 899999999999999999999975 57999999999753 47999999999999
Q ss_pred CCC
Q psy18040 79 FCG 81 (82)
Q Consensus 79 f~~ 81 (82)
||+
T Consensus 306 f~~ 308 (442)
T TIGR03230 306 YKV 308 (442)
T ss_pred ceE
Confidence 986
No 2
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=99.88 E-value=2.5e-23 Score=144.75 Aligned_cols=73 Identities=40% Similarity=0.809 Sum_probs=54.7
Q ss_pred Cceeecccc-HHHHHhhcCCCCCceeeecCChhhhhcCCcccCCCCCCcccCCcccCCCC-----CceeEEEecCCCCCC
Q psy18040 6 SLVEQASMK-TRKGESSILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKST-----GRGTLYLLTRDEEPF 79 (82)
Q Consensus 6 ~~~~CsH~R-~~yf~ESI~~~~~F~a~~C~s~~~~~~g~C~~c~~~~~~~~MG~~~~~~~-----~~G~~yl~T~~~~Pf 79 (82)
+.+.|||.| |+||+|||.+++.|+|++|++|++|+.|.|..|.. ..++.||+++++.+ .+|+|||.|++++||
T Consensus 253 ~~~~CsH~ra~~~f~eSi~~~~~f~a~~C~s~~~~~~g~C~~c~~-~~~~~mG~~~~~~~~~~~~~~G~yyl~T~~~~Pf 331 (331)
T PF00151_consen 253 RFISCSHMRAVEYFAESINNPCNFPAVRCSSYDSFLAGKCDGCNN-NRCAVMGYHADKFKGKTSPARGIYYLETNAKSPF 331 (331)
T ss_dssp SHHHHHHHHHHHHHHHHHHSTTTTB-EE-S-HHHHHTTTS-S--T-T---BSSGGGGGSTTTTSSSSEEEEE---SSST-
T ss_pred ecchhhhHHHHHHHHHHhcCCCCceeEeCcCHHHHhhcccccCCC-CCCcCCCCCcccCCccccCCCeEEEEeeCCCCcC
Confidence 467899999 99999999999999999999999999999998865 68999999977654 689999999999998
No 3
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.79 E-value=1.6e-19 Score=122.72 Aligned_cols=67 Identities=37% Similarity=0.747 Sum_probs=59.9
Q ss_pred ceeecccc-HHHHHhhcCCCCCceeeecCChhhhhcCCcccCCCCCCcccCCcccCCCCCceeEEEecCC
Q psy18040 7 LVEQASMK-TRKGESSILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTGRGTLYLLTRD 75 (82)
Q Consensus 7 ~~~CsH~R-~~yf~ESI~~~~~F~a~~C~s~~~~~~g~C~~c~~~~~~~~MG~~~~~~~~~G~~yl~T~~ 75 (82)
.+.|||.| ++||+|||.++++|+|++|++|++|+.+.|..|.. .+..||+++++...+|+|||.|++
T Consensus 208 ~~~CsH~ra~~~~~esi~~~~~f~a~~C~~~~~~~~~~C~~~~~--~~~~mG~~~~~~~~~G~~~~~T~~ 275 (275)
T cd00707 208 FVACSHQRAVHYFAESILSPCGFVAYPCSSYDEFLAGKCFPCGS--GCVRMGYHADRFRREGKFYLKTNA 275 (275)
T ss_pred ccccchHHHHHHHHHHccCCCCceeEeCCCHHHHhcCCCCCCCC--CCcccCCccCCCCCCceEEEEcCC
Confidence 47999999 99999999988999999999999999999987642 589999999987445999999985
No 4
>PHA00731 hypothetical protein
Probab=32.28 E-value=40 Score=19.70 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=14.2
Q ss_pred CceeEEEecCCCCCCCC
Q psy18040 65 GRGTLYLLTRDEEPFCG 81 (82)
Q Consensus 65 ~~G~~yl~T~~~~Pf~~ 81 (82)
+..+|||-|++..||..
T Consensus 13 QnSvffllT~grk~yg~ 29 (96)
T PHA00731 13 QNSIFFLLTEGRKTYGK 29 (96)
T ss_pred ccceEEEEecCcccccc
Confidence 45789999999999864
No 5
>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C subunit that is part of the V1 complex, and is localised to the interface between the V1 and V0 complexes []. This subunit does not show any homology with F-ATPase subunits. The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (V0) sectors of the enzyme []. The release of subunit C from the ATPase complex results in the dissociation of the V1 and V0 subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033180 proton-transporting V-type ATPase, V1 domain; PDB: 1U7L_A.
Probab=26.68 E-value=19 Score=26.02 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=15.1
Q ss_pred ccc-HHHHHhhcCC---CCCceee
Q psy18040 12 SMK-TRKGESSILP---RCNFPAL 31 (82)
Q Consensus 12 H~R-~~yf~ESI~~---~~~F~a~ 31 (82)
|.+ .+.|+|||+. |..|.++
T Consensus 294 HlKalRvFVESVLRYGLP~~F~a~ 317 (371)
T PF03223_consen 294 HLKALRVFVESVLRYGLPPNFQAF 317 (371)
T ss_dssp HHHHHHHHHHHHHHH-SS--EEEE
T ss_pred HHhhhhhhhhhhhhcCCCCCceEE
Confidence 889 9999999975 5567765
No 6
>PRK13736 conjugal transfer protein TraK; Provisional
Probab=25.06 E-value=82 Score=21.46 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=17.0
Q ss_pred CcccCCCCCceeEEEecCCCCCCC
Q psy18040 57 GYYADKSTGRGTLYLLTRDEEPFC 80 (82)
Q Consensus 57 G~~~~~~~~~G~~yl~T~~~~Pf~ 80 (82)
++...+...+|..||.++...||.
T Consensus 67 ~~~~~~~~~~G~i~vs~~~~~pfT 90 (245)
T PRK13736 67 ALTNNEQTASGGVVLATVNKKPFT 90 (245)
T ss_pred cccccCCCCCceEEEEecCCCCEE
Confidence 333334456899999999988884
No 7
>KOG3952|consensus
Probab=23.20 E-value=41 Score=23.32 Aligned_cols=29 Identities=0% Similarity=-0.140 Sum_probs=21.9
Q ss_pred cCCceeeccccHHHHHhhcCCCCCceeee
Q psy18040 4 AKSLVEQASMKTRKGESSILPRCNFPALA 32 (82)
Q Consensus 4 ~~~~~~CsH~R~~yf~ESI~~~~~F~a~~ 32 (82)
+..+..|+|.|+.+|+.--+...+|+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~PN~~~~~~~~~ 124 (304)
T KOG3952|consen 96 MQTFMKCSHGRYAFWRDKPNDKKPVIVFM 124 (304)
T ss_pred ccceeeeccccccceeeCCCCCCcEEEeh
Confidence 45677899999778887555557888876
No 8
>PRK14746 RepA leader peptide Tap; Provisional
Probab=23.03 E-value=44 Score=14.79 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=13.3
Q ss_pred c-HHHHHhhcCCCCCceeeecC
Q psy18040 14 K-TRKGESSILPRCNFPALACE 34 (82)
Q Consensus 14 R-~~yf~ESI~~~~~F~a~~C~ 34 (82)
| .+|+.-++.-+|.-.|.+|+
T Consensus 3 RK~Q~l~~~lLLpCniSAg~~d 24 (26)
T PRK14746 3 RKVQYLLRLLLLPCNISAGRCD 24 (26)
T ss_pred HHHHHHHHHHHhcceecccccC
Confidence 5 66766666556766666654
No 9
>KOG2909|consensus
Probab=22.07 E-value=31 Score=25.05 Aligned_cols=21 Identities=33% Similarity=0.292 Sum_probs=16.0
Q ss_pred ccc-HHHHHhhcCC---CCCceeee
Q psy18040 12 SMK-TRKGESSILP---RCNFPALA 32 (82)
Q Consensus 12 H~R-~~yf~ESI~~---~~~F~a~~ 32 (82)
|.. .+.|+|||.. |-.|.++-
T Consensus 297 HiKaLRvfVESVlRYGLP~~F~a~~ 321 (381)
T KOG2909|consen 297 HIKALRVFVESVLRYGLPPNFQAVL 321 (381)
T ss_pred HHHHHHHHHHHHHHhcCCcchheee
Confidence 888 9999999975 45566543
No 10
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=21.03 E-value=45 Score=11.49 Aligned_cols=6 Identities=33% Similarity=0.728 Sum_probs=3.7
Q ss_pred ccCCcc
Q psy18040 54 GNMGYY 59 (82)
Q Consensus 54 ~~MG~~ 59 (82)
+.||++
T Consensus 2 psmgf~ 7 (10)
T PF08262_consen 2 PSMGFH 7 (10)
T ss_pred Cccccc
Confidence 457765
No 11
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=20.32 E-value=51 Score=18.92 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=12.1
Q ss_pred CCcccCCCCCceeEEEecC
Q psy18040 56 MGYYADKSTGRGTLYLLTR 74 (82)
Q Consensus 56 MG~~~~~~~~~G~~yl~T~ 74 (82)
|---+++-...|.|||+.|
T Consensus 67 l~~La~RI~Ln~RYYLKnN 85 (85)
T cd01785 67 LQNLAERIQLSSRYYLKNN 85 (85)
T ss_pred HHHHHHhhcccceEEeccC
Confidence 3334444445799999875
Done!