RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18040
(82 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 70.0 bits (172), Expect = 3e-16
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 20 SSILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTGRGTLYLLTRD 75
SIL C F A C SY+++L G CF C + C MGY+AD+ G YL T
Sbjct: 222 ESILSPCGFVAYPCSSYDEFLAGKCFPC--GSGCVRMGYHADRFRREGKFYLKTNA 275
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 67.8 bits (166), Expect = 3e-15
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 20 SSILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADK-----STGRGTLYLLTR 74
S+L NFPA C SY+++ CF C +C MG YADK S G YL T
Sbjct: 266 ESLLNPRNFPAYPCSSYDEFSNNKCFGCPKG-RCPYMGIYADKFDGKTSKLEGDYYLNTN 324
Query: 75 DEEPF 79
+ PF
Sbjct: 325 SKSPF 329
>gnl|CDD|197362 cd09804, Dcp1, mRNA decapping enzyme 1 (Dcp1). mRNA decapping
enzyme 1 (Dcp1), together with Dcp2, is part of the
decapping complex which catalyzes the removal of the 5'
cap structure of mRNA. This decapping reaction is an
essential step in mRNA degradation, by exposing the 5'
end for exonucleolytic digestion. Dcp1 binds to the
N-terminal helical domain of catalytic subunit Dcp2 and
enhances its function by promoting Dsp2's closed
conformation which is catalytically more active.
Length = 121
Score = 26.0 bits (58), Expect = 1.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 67 GTLYLLTRDEEPFCG 81
GTL++ R EP G
Sbjct: 47 GTLFVYKRSAEPRYG 61
>gnl|CDD|188219 TIGR02428, pcaJ_scoB_fam, 3-oxoacid CoA-transferase, B subunit.
Various members of this family are characterized as the
B subunits of succinyl-CoA:3-ketoacid-CoA transferase
(EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase
(EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase
(EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase
(EC 2.8.3.9). This represents a very distinct clade with
strong sequence conservation within the larger family
defined by pfam01144. The A subunit represents a
different clade in pfam01144.
Length = 207
Score = 25.7 bits (57), Expect = 2.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 15 TRKGESSILPRCNFP 29
T+ GES IL C P
Sbjct: 145 TKDGESKILKECTLP 159
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 25.8 bits (57), Expect = 3.2
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 16/82 (19%)
Query: 4 AKSLVEQASMKTRKGES--SILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYAD 61
AK+ V+ ++T ES S LP + +A + + +L P G Y+A
Sbjct: 179 AKAAVKHMDLRTVGQESVVSYLPLSH---IAAQILDIWL---------PISVGGCVYFAQ 226
Query: 62 KSTGRGTLYLLTRDEEP--FCG 81
+GTL R+ P F G
Sbjct: 227 PDALKGTLVKTLREVRPTAFMG 248
>gnl|CDD|182084 PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional.
Length = 956
Score = 25.6 bits (56), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 59 YADKSTGRGTLYLLTRDEE 77
+A TGR L+ TR+EE
Sbjct: 459 WATCVTGRPVLFRYTREEE 477
>gnl|CDD|224968 COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta
subunit [Lipid metabolism].
Length = 225
Score = 25.3 bits (56), Expect = 4.3
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 15 TRKGESSILPRCNFPALAC 33
+ G IL C P
Sbjct: 150 KKSGVGKILKECTLPLTGN 168
>gnl|CDD|215057 PLN00105, PLN00105, malate/L-lactate dehydrogenase; Provisional.
Length = 330
Score = 25.2 bits (55), Expect = 4.9
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 22 ILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTGRGTLYLLTRDEEPF 79
+L +A + + + G C T G +GYYA+K +G + L+ + F
Sbjct: 78 VLHHAM--DMAIDKAKTHGVGIVGTCNTSTSTGALGYYAEKVAQQGLIGLVFANSPEF 133
>gnl|CDD|185280 PRK15382, PRK15382, non-LEE encoded effector protein NleB;
Provisional.
Length = 326
Score = 24.8 bits (54), Expect = 5.7
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 42 GNCFNCTDPTKCGNMGYYADKSTGRGTLYL 71
G F T T C N+ S G +YL
Sbjct: 194 GELFTETGKTGCHNI------SPCEGCIYL 217
>gnl|CDD|234663 PRK00142, PRK00142, putative rhodanese-related sulfurtransferase;
Provisional.
Length = 314
Score = 24.4 bits (54), Expect = 8.5
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 24 PRCNFPALACES-YEKYLEGNCFNCTDPTKC 53
P CN L CE EKYL C + +
Sbjct: 260 PACNLLILQCEECEEKYLGCCSEECCEHPRN 290
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.409
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,686,750
Number of extensions: 251373
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 11
Length of query: 82
Length of database: 10,937,602
Length adjustment: 51
Effective length of query: 31
Effective length of database: 8,675,548
Effective search space: 268941988
Effective search space used: 268941988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)