RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18040
(82 letters)
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 73.9 bits (181), Expect = 2e-17
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 20 SSILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTG-----RGTLYLLTR 74
SSIL F C SY+++ E CF C C MG++AD+ G T +L T
Sbjct: 256 SSILNPEGFLGYPCASYDEFQESGCFPCPA-KGCPKMGHFADQYPGKTNAVEQTFFLNTG 314
Query: 75 DEEPFC 80
+ F
Sbjct: 315 ASDNFT 320
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 72.4 bits (177), Expect = 6e-17
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 21 SILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADK-----STGRGTLYLLTRD 75
SIL F A C+SY+K+ E CF C C MG+YAD+ S T +L T +
Sbjct: 275 SILNPDGFLAYPCDSYDKFQENGCFPCPA-GGCPKMGHYADQYKEKTSAVEQTFFLNTGE 333
Query: 76 EEPFC 80
+
Sbjct: 334 SGDYT 338
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 71.2 bits (174), Expect = 2e-16
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 21 SILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTG-----RGTLYLLTRD 75
SIL F C SYEK+ + +CF C + C MG+YAD+ G T+YL T D
Sbjct: 275 SILNPDGFLGYPCSSYEKFQQNDCFPCPE-EGCPKMGHYADQFEGKTATVEQTVYLNTGD 333
Query: 76 EEPFC 80
F
Sbjct: 334 SGNFT 338
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 70.1 bits (171), Expect = 4e-16
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 21 SILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTGR-----GTLYLLTRD 75
SIL F +C SY + CF C+ C MG+YAD+ GR YL T D
Sbjct: 274 SILNPDGFAGFSCASYSDFTANKCFPCSS-EGCPQMGHYADRFPGRTKGVGQLFYLNTGD 332
Query: 76 EEPFC 80
F
Sbjct: 333 ASNFA 337
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 66.3 bits (161), Expect = 9e-15
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 21 SILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADK-----STGRGTLYLLTRD 75
SIL F + C SY + CF C D C MG+YADK S +L T D
Sbjct: 274 SILNPDGFASYPCASYRAFESNKCFPCPD-QGCPQMGHYADKFAVKTSDETQKYFLNTGD 332
Query: 76 EEPFC 80
F
Sbjct: 333 SSNFA 337
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.003
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Query: 2 ESAKSLVEQASMKTRKGESSILPRCNFPALACES 35
++ K L QAS+K +S+ PALA ++
Sbjct: 20 QALKKL--QASLKLYADDSA-------PALAIKA 44
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 27.4 bits (60), Expect = 0.48
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 24 PRCNFPALACESYEKYLEGNCF-----NCTDPTKCGNMGYYADKSTGRGTL 69
P C+ C + +C C T + TG G L
Sbjct: 63 PFCHSTQ--CSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGEL 111
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial
enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana
tabacum} SCOP: c.1.22.1
Length = 353
Score = 26.7 bits (60), Expect = 0.69
Identities = 3/22 (13%), Positives = 4/22 (18%)
Query: 13 MKTRKGESSILPRCNFPALACE 34
+ R L E
Sbjct: 43 QLLCEKYPLFRDRSENVDLVVE 64
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY
diffraction, structural genomics, NPPSFA; 1.90A
{Aquifex aeolicus}
Length = 338
Score = 26.3 bits (59), Expect = 0.93
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 13 MKTRKGESSILPRCNFPALACE 34
K R + L C LA E
Sbjct: 35 RKIRNRVKNFLELCKNVDLATE 56
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel,
cytoplasm, lyase, porphyrin biosynthesis; 2.80A
{Shigella flexneri}
Length = 354
Score = 25.9 bits (58), Expect = 1.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 13 MKTRKGESSILPRCNFPALACE 34
TR + C LACE
Sbjct: 37 KATRAQAGDFMSLCKNAELACE 58
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A
{Daucus carota} PDB: 3vlb_A
Length = 413
Score = 25.6 bits (55), Expect = 2.1
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 24 PRCNFPALACESYEKYLEGNCFN-----CTDPTKCGNMGYYADKSTGRGTL 69
RC C G+CFN C + T + G +
Sbjct: 62 VRCRTSQ--CSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEV 110
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI,
heme biosynthesis, structural GENO niaid; 1.65A
{Burkholderia thailandensis}
Length = 368
Score = 25.6 bits (57), Expect = 2.2
Identities = 7/22 (31%), Positives = 7/22 (31%)
Query: 13 MKTRKGESSILPRCNFPALACE 34
TR S L P A E
Sbjct: 42 NATRARAGSFLGLAKHPDYATE 63
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial;
SCOT, COA transferase, dynamic domain, glycerol,
mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A*
1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Length = 481
Score = 24.7 bits (54), Expect = 3.6
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 8/37 (21%)
Query: 1 MESAKSLVEQASMK--------TRKGESSILPRCNFP 29
M A LV A K + I+ +C P
Sbjct: 384 MGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLP 420
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 24.7 bits (55), Expect = 3.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 26 CNFPALACESYEKYLE 41
N P L SYE++LE
Sbjct: 399 VNDPELMHFSYERFLE 414
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 24.8 bits (55), Expect = 3.9
Identities = 2/16 (12%), Positives = 4/16 (25%)
Query: 26 CNFPALACESYEKYLE 41
N + +L
Sbjct: 401 VNSIEKVKNPQKIFLR 416
>3d2u_A UL18 protein; MHC class I homolog, disease mutation, glycation,
glycoprote immune response, immunoglobulin domain, MHC
I, pyrrolidone carboxylic acid; HET: NAG MAN BMA FUC;
2.21A {Human herpesvirus 5}
Length = 281
Score = 24.3 bits (53), Expect = 5.4
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 8 VEQASMKTRKGESSILPRCNFPALACESYEKYLEGNC 44
+ S ++ N YL+GNC
Sbjct: 138 NYEISWLKQQKTYIDGKIKNISEGDTTIQRNYLKGNC 174
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 24.4 bits (54), Expect = 5.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 42 GNCFNCTDPTK 52
GNC C DP K
Sbjct: 398 GNCDICLDPPK 408
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.409
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,139,569
Number of extensions: 50935
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 22
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)