RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18040
         (82 letters)



>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 338

 Score = 71.7 bits (175), Expect = 3e-17
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 20  SSILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADKSTG-----RGTLYLLTR 74
           SSIL    F    C SYEK+ + +CF C +   C  MG+YAD+  G       T+YL T 
Sbjct: 274 SSILNPDGFLGYPCSSYEKFQQNDCFPCPE-EGCPKMGHYADQFEGKTATVEQTVYLNTG 332

Query: 75  DEEPF 79
           D   F
Sbjct: 333 DSGNF 337


>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
           {Dog (Canis familiaris) [TaxId: 9615]}
          Length = 337

 Score = 69.4 bits (169), Expect = 2e-16
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 21  SILPRCNFPALACESYEKYLEGNCFNCTDPTKCGNMGYYADK-----STGRGTLYLLTRD 75
           SIL    F +  C SY  +    CF C D   C  MG+YADK     S      +L T D
Sbjct: 274 SILNPDGFASYPCASYRAFESNKCFPCPD-QGCPQMGHYADKFAVKTSDETQKYFLNTGD 332

Query: 76  EEPF 79
              F
Sbjct: 333 SSNF 336


>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain,
           citF2 {Salmonella typhimurium [TaxId: 90371]}
          Length = 236

 Score = 26.2 bits (58), Expect = 0.36
 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 6/27 (22%)

Query: 42  GNCFNCTDPTKCGNMGY------YADK 62
           GN    +  ++CG++GY      YA  
Sbjct: 170 GNANGFSGKSRCGSLGYAQVDAQYAKC 196


>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein
           1, C-terminal domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 259

 Score = 26.2 bits (57), Expect = 0.44
 Identities = 6/22 (27%), Positives = 8/22 (36%)

Query: 26  CNFPALACESYEKYLEGNCFNC 47
               A+  ESYE+    N    
Sbjct: 160 LGIKAVLAESYERIHRSNLVGM 181


>d1n7oa3 b.30.5.2 (A:541-814) Hyaluronate lyase {Streptococcus
          pneumoniae [TaxId: 1313]}
          Length = 274

 Score = 25.3 bits (55), Expect = 0.86
 Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 8/34 (23%)

Query: 48 TDPTKCGN----MGYYADKSTGRGTLYLLTRDEE 77
          T   +  N     G+Y    T  G  YL   D  
Sbjct: 33 TLNYEHMNKENKRGWY----TSDGMFYLYNGDLS 62


>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal
          domain {Thermotoga maritima [TaxId: 2336]}
          Length = 81

 Score = 23.1 bits (50), Expect = 3.0
 Identities = 2/16 (12%), Positives = 4/16 (25%)

Query: 26 CNFPALACESYEKYLE 41
           N         + +L 
Sbjct: 43 VNSIEKVKNPQKIFLR 58


>d1xmta_ d.108.1.1 (A:) Hypothetical protein AT1g77540 {Thale
          cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 95

 Score = 22.8 bits (49), Expect = 4.9
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 4  AKSLVEQASMKTRKGESSILPRCNFPA 30
          A  L   A         SI+P C++ +
Sbjct: 50 ASHLCVAAFEHASSHSISIIPSCSYVS 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 286,584
Number of extensions: 11175
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 11
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)