Query psy18041
Match_columns 661
No_of_seqs 307 out of 855
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 20:58:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230|consensus 100.0 9E-96 2E-100 850.6 29.1 511 139-659 729-1399(1598)
2 cd00139 PIPKc Phosphatidylinos 100.0 1.2E-28 2.6E-33 261.0 10.8 106 3-110 206-313 (313)
3 KOG0230|consensus 99.9 3E-28 6.5E-33 286.6 7.7 119 2-120 1476-1597(1598)
4 smart00330 PIPKc Phosphatidyli 99.9 7.2E-28 1.6E-32 258.0 9.0 105 2-109 176-342 (342)
5 PF01504 PIP5K: Phosphatidylin 99.9 1.3E-27 2.7E-32 247.0 6.4 105 3-109 123-252 (252)
6 COG5253 MSS4 Phosphatidylinosi 99.9 1.2E-25 2.7E-30 241.7 7.1 163 485-658 204-404 (612)
7 KOG0229|consensus 99.9 2.8E-25 6E-30 237.7 8.9 103 4-109 247-419 (420)
8 PLN03185 phosphatidylinositol 99.9 4.1E-22 8.8E-27 230.0 10.6 102 4-110 551-765 (765)
9 smart00330 PIPKc Phosphatidyli 99.8 8.7E-20 1.9E-24 195.9 8.3 92 568-660 13-105 (342)
10 cd00139 PIPKc Phosphatidylinos 99.8 3.3E-19 7.2E-24 189.2 8.1 78 582-660 54-132 (313)
11 COG5253 MSS4 Phosphatidylinosi 99.7 4.9E-19 1.1E-23 191.3 1.8 116 4-119 487-606 (612)
12 KOG0229|consensus 99.7 5.8E-17 1.2E-21 174.2 5.1 77 583-660 96-174 (420)
13 PLN03185 phosphatidylinositol 99.6 1.6E-16 3.6E-21 183.9 8.5 77 583-660 402-480 (765)
14 PF14205 Cys_rich_KTR: Cystein 24.3 49 0.0011 26.9 1.6 20 247-266 3-22 (55)
15 PF12226 Astro_capsid_p: Turke 24.1 37 0.0008 33.7 1.1 61 570-642 90-153 (230)
16 KOG2129|consensus 21.4 3E+02 0.0064 31.3 7.3 20 406-425 205-224 (552)
17 PF01586 Basic: Myogenic Basic 21.2 32 0.00069 30.5 0.0 17 242-259 67-83 (86)
18 KOG2150|consensus 20.6 4.3E+02 0.0093 31.2 8.7 46 341-386 5-53 (575)
19 PF10498 IFT57: Intra-flagella 20.1 3.8E+02 0.0083 29.8 8.0 49 321-371 200-250 (359)
No 1
>KOG0230|consensus
Probab=100.00 E-value=9e-96 Score=850.63 Aligned_cols=511 Identities=33% Similarity=0.548 Sum_probs=391.2
Q ss_pred CCCCCccCCCCCCceeEEEEEEecCCCCCcccCCCeEeeeeccCCCCccHHHHHHHHhcccCCCCCCCCCCCCcccceeE
Q psy18041 139 STKIDALQPSNHQRLPVLIYICRSPIHSPGFCVEPCTINMDFYARNDIPLGSFLEKYCFRRDYKCPSATCLIPTLEHERW 218 (661)
Q Consensus 139 ~~~~d~l~p~~HQ~I~VL~Ss~~~s~~~~~~C~~P~l~~i~fY~~~D~tLG~FLe~~c~~~~~~Cps~~C~~pm~~H~r~ 218 (661)
+...+.++|.+||+|+||||+++... ..+|++||+++|+|||.+|++||+||+++||++.+.||+ |++||++|+|+
T Consensus 729 ~~s~~~~~~~~HQsilVl~ss~~~~k--~~~C~r~~l~~ikyy~~~D~~lg~fL~~~~f~~~~~C~s--C~~~~laHv~~ 804 (1598)
T KOG0230|consen 729 QSSKDALDPSSHQSILVLFSSRSVLK--GSVCERPHLLRIKYYGSFDKPLGRFLRDYLFDQRYMCPS--CNEPMLAHVRC 804 (1598)
T ss_pred hhcccCCCccccceeEEEEeeeeecc--CCccccccEEEEEeeccccchHhHHHHHHHhcccccCcc--ccchHHHHHHH
Confidence 35579999999999999999983322 244999999999999999999999999999999999975 99999999999
Q ss_pred EEECCeEEEEEeeecCCCCCCCCCCcEEEEeeCCCCC---CCCCceecchhhhcccHHHHhhhhccCCCCccccCCCCCC
Q psy18041 219 FIHGNGSVCVGLCEIENRPPEAYDERIIMWNWCPSCK---QVSSILPMSSDTWRLSLAKFLDLRFNCVPLGCKTASCTHH 295 (661)
Q Consensus 219 yvH~~g~i~I~v~~~~~~~lp~~~~~I~mWs~C~~C~---~~Tp~vpmS~~tw~lSFgKfLEL~F~~~~~~~r~~~C~H~ 295 (661)
||||+|+++|.|++++..-.++.+++||||+||.+|+ .+|++++||+++|++||||||||+|++|++..|..+|||+
T Consensus 805 yvh~~g~l~I~v~~~~e~l~~e~~~kI~~w~~ClkC~~~~~sT~rv~~Sdaaw~lSfgKfLEl~fs~~a~~~R~~~C~Hs 884 (1598)
T KOG0230|consen 805 YVHGNGSLTISVKKLPELLPGEQKGKIWMWSRCLKCNRFPPSTRRVVMSDAAWGLSFGKFLELSFSNHATANRVASCGHS 884 (1598)
T ss_pred HhhccCceEEEeeccccccccccCceEEEEeccccCCCCCCCcceeEcchhhHhhhHHHHHHhhhccccccccccCCcch
Confidence 9999999999999998741447899999999999999 6799999999999999999999999999999999999999
Q ss_pred ccccceeecccCCEEEEEEEeeeeeEEEecCCceeeecCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--
Q psy18041 296 LHQEQVHYFAYNNIVASFIYTRIKLYEVCIPSTTLKKSLSTFDKNGLFEEVKKWSLMGQEVFSIVLEKLHTNQTDATM-- 373 (661)
Q Consensus 296 l~rdh~ryF~~~~~va~f~y~~I~~~ev~~Pp~~l~~~~~~~~~~~l~~e~~~~~~k~~~~f~~I~~rL~~l~~d~~~-- 373 (661)
+|||||||||||+|||+|+|++|++|+|.+||.+|.|+ ...+.|+.+|+++++.||+.+|++|.++|++|+++...
T Consensus 885 l~rD~L~ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~--~~~~~~~~~e~k~v~~k~~~~~n~v~~~l~~i~~~~~~~~ 962 (1598)
T KOG0230|consen 885 LHRDCLRFFGFGNMVACFRYSPIEVYEVDLPPSKLEFN--HIQQEWLQEEIKEVIEKGEELYNEVLERLSRIAEKDENRP 962 (1598)
T ss_pred hhhhhhhhcccCCceeeeeeccceeEEEeCChhhcccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999 35778999999999999999999999999999988432
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHhhhCChhhhcchhhhHHHHHHHHHHHHHHHHHHhhHhhhcccCCCCCCC------C
Q psy18041 374 --NTLQPLLVKDQANLKQKVDDIQMKLTDPDVMNNLWNLEDSIVKLKRAVVESINNWNSRLMKTRPKTKSTDS------S 445 (661)
Q Consensus 374 --~~l~~~l~~e~~~f~~~i~~~~~~l~~~~~~~~~~~~~d~l~~l~r~l~~~~~~Wn~rl~~~~~~~k~~~~------~ 445 (661)
..++.++.+|+.+|++.++.+....+.. .....++ ..++++||+|...++.|+.|++....+.|.+.. .
T Consensus 963 ~i~~l~~~l~~e~~~f~~~l~~~~~~~~~~--~~~s~d~-l~l~~~rr~l~~~s~~w~~~l~s~~~~~k~~~~~~~~~~~ 1039 (1598)
T KOG0230|consen 963 LIQELKELLKHEKKEFKQNLQPIFTLEVDD--GQLSHDI-LALNRDRRALLASSYLWDERLISLSKSLKLESSKDTKPKE 1039 (1598)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhhcccc--CcchhhH-HHHHHHHHHHHhhhccccccchhhhhhhcccccccccccc
Confidence 4577899999999999988876644321 1123345 469999999999999999999988766551110 0
Q ss_pred CCcc-------CCc----CC--CCC--CccCCC-------cccc-----CCCCC--------C-----------------
Q psy18041 446 KSLL-------TDI----VE--GTP--TTETST-------EYVF-----DSEES--------E----------------- 473 (661)
Q Consensus 446 ~~~~-------~~~----~~--~~~--~~~~~s-------pi~~-----D~~~~--------~----------------- 473 (661)
+... .|. .+ ... +....+ |... |.... +
T Consensus 1040 ~~~~~~~~~~r~p~~~k~~~~~~~~~~~~s~~~~~~~~~lp~~~~s~~~d~~~~~~~~~~~~~~s~~~~~~~v~n~~s~~ 1119 (1598)
T KOG0230|consen 1040 SETNSTAKRKRSPEPQKGVDEDSFLTDSSSDVSSLEHLNLPLPEDSNSTDTGLSGPSEVLEDNESIDEMLGSVRNTYSLA 1119 (1598)
T ss_pred ccccCccccccCchhhccccccccccccccccCccccccCCCCCcccccchhccCcccccccccchhhcccccccccchh
Confidence 0000 000 00 000 000000 1100 10000 0
Q ss_pred -------------------------CCCC-CCCC---------------CcccccCchhhHHH------HHhhcCCC---
Q psy18041 474 -------------------------ESDV-DHVD---------------DSDTVKTKVPRMKA------ILSQLLPT--- 503 (661)
Q Consensus 474 -------------------------~~~~-~~~~---------------~~~~~~~k~~~~~~------~ls~~~~~--- 503 (661)
+++- +... .+++......+|.. .+.++-+.
T Consensus 1120 ~~~~~~~~~~l~~~~~g~r~~~~~~P~s~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~~~e~~lns~~~~~~ 1199 (1598)
T KOG0230|consen 1120 NKVRKILKQILDSATIGNRANPKSSPFSGQDHSTDLPLESNPIHVLEKELSSWIEDPLTNMYYREATKELSLNSQKNSAE 1199 (1598)
T ss_pred hHHHHHHHHhcccccccccccCCCCCCchhhhccccccccCCccccccccHHHHhhhhhhHhHHHHHHHHHhhcchhhcc
Confidence 0000 0000 01111112122211 11111111
Q ss_pred --CCCCCcccccc--cccccccccccCCC-eeEEeeCCCchhHHHHhcCChhhHHHHHHHh-----hcc-----------
Q psy18041 504 --NVPSLPISNSL--VEAQQHHTLALGCS-VPVVVYEQEPSSIISYALSSFDYQYKLEELK-----AAH----------- 562 (661)
Q Consensus 504 --~~~~~~l~~p~--~~~~~h~~l~~~~~-~~v~V~e~epsSiIA~aL~s~~Y~~~l~~~~-----~d~----------- 562 (661)
..+..+...+. ..+..++++|.|.+ ++|+||||||+|+|||||++++|..+..+.. .+|
T Consensus 1200 ~~~~~k~~~s~~~s~~~~~~rLl~p~~~ndl~vp~~edpp~s~ia~al~s~~~~~q~~~p~~sis~~~S~~~~~~s~~~e 1279 (1598)
T KOG0230|consen 1200 TKEPPKYPSSESESEPESSSRLLLPLGLNDLVVPVYEDPPPSLIAYALSSKERINQESSPGLSISFSLSNLQGRLSKISE 1279 (1598)
T ss_pred cccCCcCcccccccccccccceeccccCCcccCCcccCCCchhhhhhhcchhhccCCCCCCccccccccccccchhhhhh
Confidence 11111111111 02455788886654 7899999999999999999988877543211 000
Q ss_pred -----------c---------ccc--cc--CCCCceeEEEcCCCCceEEEEEcHHHHHHHHHhhCCCChhhHHHhhcccc
Q psy18041 563 -----------E---------IET--NE--CKIPHIDIKFSDTAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCI 618 (661)
Q Consensus 563 -----------~---------~~~--~~--~~~~h~~~~f~~~~~~f~~~~y~~~~F~~lR~~~~~~~~~~~i~SLsr~~ 618 (661)
+ .+. .. ....|++++|++|+.+|+||+|||++|++||+.||++ |++||||||||+
T Consensus 1280 ~~~~~~~sl~~s~l~~s~~~~~e~l~~~~~~~~~h~~~~f~egk~k~svk~~yAe~F~~LR~~c~~s-Ee~fIrSLsRc~ 1358 (1598)
T KOG0230|consen 1280 FDDTKSESLDNSGLESSSYRRGENLQKSKLETRTHLEYQFSEGKAKYSVKCYYAEQFRALRKICCPS-EEDFIRSLSRCV 1358 (1598)
T ss_pred hhhhhhccccccccchhhhcchhhccccccccccceeeeccCCceEEEEEEEehhhHHHHHHhhCch-HHHHHHHHhcCc
Confidence 0 111 22 4558999999999999999999999999999999987 999999999999
Q ss_pred cccCCCCccCCceeeecCCcEEEEecCHHHHHHHHhhccCC
Q psy18041 619 RWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFVFPE 659 (661)
Q Consensus 619 ~w~a~gGKSgs~F~kt~DdRfiiK~is~~E~~~f~~~a~~~ 659 (661)
+|+|+||||||+|+||+|||||||||+|+|+++|++|||.|
T Consensus 1359 ~W~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~Y 1399 (1598)
T KOG0230|consen 1359 KWEAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAY 1399 (1598)
T ss_pred ccccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999998
No 2
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=99.95 E-value=1.2e-28 Score=260.97 Aligned_cols=106 Identities=45% Similarity=0.822 Sum_probs=99.1
Q ss_pred CCcccccC--CceeeCcchHHHHHHHHHhHHHhhhcCcccccceeEEEeccCceEEEEEeeccccCCHHHHHHHHHHHhh
Q psy18041 3 LPCNMISE--SPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSG 80 (661)
Q Consensus 3 ld~~~~~~--~~l~l~~~~~~~l~~~L~~D~~FL~~~~imDYSLLvgi~~~~~~y~~GIID~L~~y~~~Kk~E~~~K~~~ 80 (661)
+|+||+.. ++|+|+++.|+.|++||++||+||+++||||||||||||..+.+||+|||||||+|||+|++||++|++
T Consensus 206 KD~df~~~~~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGi~~~~~i~~~GIID~L~~y~~~Kk~E~~~K~~- 284 (313)
T cd00139 206 KDLNLLEMIEQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTWDKKLEHWVKSL- 284 (313)
T ss_pred chhhhHhhcCceEEeCHHHHHHHHHHHHHHHHHHHHCCCcccceEEEEecCCceEEEEEEeeeeeCCHHHHHHHHHHHh-
Confidence 68999963 699999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccCCCCCCCcccChhhHHHHHHHHHhhhhc
Q psy18041 81 LLGGQGKLPTIVSPDEYRKRFQSAMNRYFL 110 (661)
Q Consensus 81 ~~~~~~~~iS~v~P~~Y~~RF~~~~~~~f~ 110 (661)
.++.+.+||||+|.+|++||++||.++|.
T Consensus 285 -~~~~~~~iS~v~P~~Y~~RF~~fi~~~f~ 313 (313)
T cd00139 285 -GHDGGKTPSVVSPEQYAKRFREFMDKYFL 313 (313)
T ss_pred -ccCCCCCcceECHHHHHHHHHHHHHHhcC
Confidence 34334899999999999999999999984
No 3
>KOG0230|consensus
Probab=99.95 E-value=3e-28 Score=286.60 Aligned_cols=119 Identities=58% Similarity=0.992 Sum_probs=114.5
Q ss_pred CCCcccc---cCCceeeCcchHHHHHHHHHhHHHhhhcCcccccceeEEEeccCceEEEEEeeccccCCHHHHHHHHHHH
Q psy18041 2 TLPCNMI---SESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTWDKKIETMVKK 78 (661)
Q Consensus 2 ~ld~~~~---~~~~l~l~~~~~~~l~~~L~~D~~FL~~~~imDYSLLvgi~~~~~~y~~GIID~L~~y~~~Kk~E~~~K~ 78 (661)
-||.|++ ++.||+|+++.|+.|..+|.+||.||++.+||||||||||+++++++++|||||+++|||+||+|+|+|.
T Consensus 1476 LLDeNlVe~~~~sPIfV~~~sK~lL~~aiwNDT~FLas~~VMDYSLLVGvD~e~~ELvlGIIDfiRtYTWDKkLESWVK~ 1555 (1598)
T KOG0230|consen 1476 LLDENLVEMMWTSPIYVGSHSKRLLRRAIWNDTSFLASINVMDYSLLVGVDDENNELVLGIIDFIRTYTWDKKLESWVKS 1555 (1598)
T ss_pred EecHHHHhhhhcCCeeehHhHHHHHHHHHhcchHHhhhcccceeeeEEEeeCCCCeEEEEehHhhhhhhhhhhhhhheec
Confidence 3899988 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCcccChhhHHHHHHHHHhhhhccCCCcccCCC
Q psy18041 79 SGLLGGQGKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWSGLT 120 (661)
Q Consensus 79 ~~~~~~~~~~iS~v~P~~Y~~RF~~~~~~~f~~~p~~~~~~~ 120 (661)
.|+.++.+.++|+|.|++|.+||.++|..||..+||.|++.+
T Consensus 1556 sGl~gpk~~~PTVVSP~qYK~RFRkAMd~YfL~VPD~Wtg~g 1597 (1598)
T KOG0230|consen 1556 SGLGGPKNKQPTVVSPEQYKTRFRKAMDTYFLMVPDQWTGLG 1597 (1598)
T ss_pred cccccCCCCCCceeCHHHHHHHHHHHHhheeeecCCcccCCC
Confidence 987677789999999999999999999999999999999875
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=99.94 E-value=7.2e-28 Score=258.01 Aligned_cols=105 Identities=40% Similarity=0.774 Sum_probs=97.1
Q ss_pred CCCccccc--CCceeeCcchHHHHHHHHHhHHHhhhcCcccccceeEEEeccCc--------------------------
Q psy18041 2 TLPCNMIS--ESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTNM-------------------------- 53 (661)
Q Consensus 2 ~ld~~~~~--~~~l~l~~~~~~~l~~~L~~D~~FL~~~~imDYSLLvgi~~~~~-------------------------- 53 (661)
.+|+||+. +.+|+|+++.|+.|++||++||+||+++||||||||||||..+.
T Consensus 176 lkD~df~~~~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (342)
T smart00330 176 LKDLDLVEMWNQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIERGQREEIELPPVYGSDESPSSESSNGG 255 (342)
T ss_pred ccccchhhccCCeEEECHHHHHHHHHHHHHHHHHHHHccchhhhhhhccccccccchhcccccccccccccccccccccC
Confidence 36899994 69999999999999999999999999999999999999997543
Q ss_pred ----------------------------------eEEEEEeeccccCCHHHHHHHHHHHhhccCCCCCCCcccChhhHHH
Q psy18041 54 ----------------------------------ELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRK 99 (661)
Q Consensus 54 ----------------------------------~y~~GIID~L~~y~~~Kk~E~~~K~~~~~~~~~~~iS~v~P~~Y~~ 99 (661)
+||||||||||+|||+||+||++|++ .. ++.+||||+|.+|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~iGIID~Lq~Y~~~KklE~~~K~~--~~-~~~~iS~V~P~~Y~~ 332 (342)
T smart00330 256 KAPDITGNLLVSNSPDGDGPFGGIPARAIRARRVVLYLGIIDILQTYTWDKKLEHWVKSI--GH-DGKTISVVHPEQYAK 332 (342)
T ss_pred CCccccccccccccccccccccccccccccCCceEEEEEEEEEEEeCCHhHHHHHHHHHh--cc-CCCCcceECHHHHHH
Confidence 89999999999999999999999997 32 368999999999999
Q ss_pred HHHHHHhhhh
Q psy18041 100 RFQSAMNRYF 109 (661)
Q Consensus 100 RF~~~~~~~f 109 (661)
||++||.+||
T Consensus 333 RF~~fi~~~F 342 (342)
T smart00330 333 RFRDFMDKYF 342 (342)
T ss_pred HHHHHHHhhC
Confidence 9999999997
No 5
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=99.94 E-value=1.3e-27 Score=246.96 Aligned_cols=105 Identities=33% Similarity=0.606 Sum_probs=72.5
Q ss_pred CCcccc-cCCceeeCcchHHHHHHHHHhHHHhhhcCcccccceeEEEe------------------------ccCceEEE
Q psy18041 3 LPCNMI-SESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGID------------------------DTNMELVV 57 (661)
Q Consensus 3 ld~~~~-~~~~l~l~~~~~~~l~~~L~~D~~FL~~~~imDYSLLvgi~------------------------~~~~~y~~ 57 (661)
.|.||. .+.+|.|+++.++.|++||++||+||+++||||||||||++ ..+.+||+
T Consensus 123 kD~df~~~~~~i~l~~~~~~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~s~~~~~vy~~ 202 (252)
T PF01504_consen 123 KDLDFIESKRKIHLGPEQKEELLKQLERDTEFLSSHNIMDYSLLVGIHNRDSNEEQENKSSFPSYAGGIMSEDGNEVYYL 202 (252)
T ss_dssp EHHHHHHTT--SBS-SCHHHHHHHHHHHHHHHHHHTTEES-EEEEEEEH---HHHHHH-H---TTTTTTCCCETTEEEEE
T ss_pred ecccccccCcEEEeChHHHHHHHHHHHHHHHHHHhccccccceeEeeeeccccccccccccccccccceeecCCCeEEEE
Confidence 578888 67999999999999999999999999999999999999999 34569999
Q ss_pred EEeeccccCCHHHHHHHHHHHhhccCCCCCCCcccChhhHHHHHHHHHhhhh
Q psy18041 58 GMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYF 109 (661)
Q Consensus 58 GIID~L~~y~~~Kk~E~~~K~~~~~~~~~~~iS~v~P~~Y~~RF~~~~~~~f 109 (661)
|||||||+||++|++|+++|+... .++.+||||+|++|++||++||.++|
T Consensus 203 GIID~L~~y~~~K~~E~~~K~~~~--~~~~~iS~v~P~~Y~~RF~~~i~~~f 252 (252)
T PF01504_consen 203 GIIDILQEYNWKKKLEHFFKSLIK--CDGQDISCVPPEEYAERFIKFIESIF 252 (252)
T ss_dssp EEE-S-EETT--------------------SSS---HHHHHHHHHHHHHHH-
T ss_pred EEehheeeccHHHHHHHHHHHHhh--cCCCCCcccCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999732 23689999999999999999999987
No 6
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=99.92 E-value=1.2e-25 Score=241.74 Aligned_cols=163 Identities=33% Similarity=0.496 Sum_probs=138.8
Q ss_pred cccCchhhHHHHHhhcCCCCCC--CCcccccccccccccccccCCCeeEEeeCCCchhHHHHhcCChhhHHHHHHHhh--
Q psy18041 485 TVKTKVPRMKAILSQLLPTNVP--SLPISNSLVEAQQHHTLALGCSVPVVVYEQEPSSIISYALSSFDYQYKLEELKA-- 560 (661)
Q Consensus 485 ~~~~k~~~~~~~ls~~~~~~~~--~~~l~~p~~~~~~h~~l~~~~~~~v~V~e~epsSiIA~aL~s~~Y~~~l~~~~~-- 560 (661)
.+.+| ..++++|++||...+. +.|+.+|. .+.+|.+-+++ |+++||||||.||++|++.+|+.++.+.+.
T Consensus 204 pl~dk-~~~kr~ls~~~~e~nS~n~~p~~~~s-~p~~~~~s~S~----~iir~~~pss~~a~~~s~~d~~~k~mr~r~se 277 (612)
T COG5253 204 PLPDK-SLLKRTLSNFWAERNSYNWKPLVYPS-CPSEHIFSDSD----VIIREDEPSSLIAFCLSTSDYRNKMMRLRDSE 277 (612)
T ss_pred CCChH-HHHHHHhhhhhccccccCCCCccCCC-CCCCCCcCccc----cccccCCcchhhhccccchhHHHHHHhhhhhh
Confidence 66778 8889999999986432 55777887 88999998886 999999999999999999999998876652
Q ss_pred --cc---------c---------------------cc--cccCCCCceeEEEcCCCCceEEEEEcHHHHHHHHHhhCCCC
Q psy18041 561 --AH---------E---------------------IE--TNECKIPHIDIKFSDTAANFSVKMYFADLFAELRKFSCPEG 606 (661)
Q Consensus 561 --d~---------~---------------------~~--~~~~~~~h~~~~f~~~~~~f~~~~y~~~~F~~lR~~~~~~~ 606 (661)
|+ + .+ ....+..|...+|..+...|+||+|||++|+.||++| ++
T Consensus 278 ~~De~~l~~~~le~gh~n~~~synmltgirvtlsr~e~iM~~~tdth~~e~~~eg~~~~s~K~y~~e~Fr~lR~l~-g~- 355 (612)
T COG5253 278 TMDERLLNGMPLEGGHRNPQESYNMLTGIRVTLSRIEEIMIKKTDTHLNEQFEEGLYEFSCKDYFPEVFRELRALC-GC- 355 (612)
T ss_pred cchhhhccccccccccccchhhhhhhhhhHHHHHHHHHHhcCCcCccchhhccccceeeeHHhhCHHHHHHHHHHh-CC-
Confidence 11 0 11 1567789999999999999999999999999999987 45
Q ss_pred hhhHHHhhcccccccCCCCccCCceeeecCCcEEEEecCHHHHHHHHhhccC
Q psy18041 607 EESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFVFP 658 (661)
Q Consensus 607 ~~~~i~SLsr~~~w~a~gGKSgs~F~kt~DdRfiiK~is~~E~~~f~~~a~~ 658 (661)
++.++++++||..|+..||||||+||+|.|.|||||+|++.|. +.|+|-
T Consensus 356 ~~alvsl~sryil~E~~~GKSGSff~~trD~kfIiKti~hsE~---~~~r~~ 404 (612)
T COG5253 356 DEALVSLLSRYILWESNGGKSGSFFLFTRDYKFIIKTISHSEH---ICFRPM 404 (612)
T ss_pred cHHHHHHHhhhheeccCCCcccceEEEeccchhhhhhhhhhhH---HHHHHH
Confidence 5669999999999999999999999999999999999999998 444443
No 7
>KOG0229|consensus
Probab=99.92 E-value=2.8e-25 Score=237.74 Aligned_cols=103 Identities=30% Similarity=0.545 Sum_probs=94.6
Q ss_pred Ccccc-cCCceeeCcchHHHHHHHHHhHHHhhhcCcccccceeEEEeccC------------------------------
Q psy18041 4 PCNMI-SESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTN------------------------------ 52 (661)
Q Consensus 4 d~~~~-~~~~l~l~~~~~~~l~~~L~~D~~FL~~~~imDYSLLvgi~~~~------------------------------ 52 (661)
|+||+ .+.+|+|+++.+++|++||++||+||++.+|||||||||||...
T Consensus 247 DlDf~~~~~~~~l~~~~~~~l~~ql~~Dce~Le~~~IMDYSLLvGiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (420)
T KOG0229|consen 247 DLDFLNEGQKLYLGKEAKKALLKQLKRDCEFLESLKIMDYSLLVGIHDRDRGQAEKEELEPQEDESEREQRLSSASPEDV 326 (420)
T ss_pred cchhhccCceEecCHHHHHHHHHHHHHHHHHHHHhcchhhhheeeeeeccccccchhhcCCCCCcccccccccccccccc
Confidence 78888 68899999999999999999999999999999999999998631
Q ss_pred ---------------------------------------ceEEEEEeeccccCCHHHHHHHHHHHhhccCCCCCCCcccC
Q psy18041 53 ---------------------------------------MELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVS 93 (661)
Q Consensus 53 ---------------------------------------~~y~~GIID~L~~y~~~Kk~E~~~K~~~~~~~~~~~iS~v~ 93 (661)
-+||||||||||.|++.||+||++|++ .+ ++..||+|+
T Consensus 327 ~~~~~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~y~GIIDILq~Y~~~KK~EH~~Ksl--~~-d~~tIS~v~ 403 (420)
T KOG0229|consen 327 LTSTASPSIQLGANMPARAGEERVDRMEYAPAQNSGGYDVVLYIGIIDILQDYDIKKKLEHAYKSL--QH-DPDTISAVD 403 (420)
T ss_pred CCCCCcccccCCCCCCCccccccccccccccccccCcceEEEEEEeehhhhhcchhhHHHHHHhhh--cc-CCceeeccC
Confidence 189999999999999999999999996 44 457799999
Q ss_pred hhhHHHHHHHHHhhhh
Q psy18041 94 PDEYRKRFQSAMNRYF 109 (661)
Q Consensus 94 P~~Y~~RF~~~~~~~f 109 (661)
|.+|++||++||.++|
T Consensus 404 P~~Ys~RF~dFi~~~~ 419 (420)
T KOG0229|consen 404 PKFYAKRFLDFISNIF 419 (420)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999999987
No 8
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.86 E-value=4.1e-22 Score=230.00 Aligned_cols=102 Identities=31% Similarity=0.510 Sum_probs=91.4
Q ss_pred CcccccCCceeeCcchHHHHHHHHHhHHHhhhcCcccccceeEEEeccC-------------------------------
Q psy18041 4 PCNMISESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTN------------------------------- 52 (661)
Q Consensus 4 d~~~~~~~~l~l~~~~~~~l~~~L~~D~~FL~~~~imDYSLLvgi~~~~------------------------------- 52 (661)
|+|| ..+|+|+++.++.|++||++||+||+++||||||||||||...
T Consensus 551 DlD~--~~~~~l~~~~k~~l~~qL~~D~~FL~~~~IMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (765)
T PLN03185 551 DLDL--NYSFYLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGVHFRAPQHLRSLLPYSRSITADGLEVVAEEDTIEDE 628 (765)
T ss_pred ecCc--CceEeeCHHHHHHHHHHHHHHHHHHhHCcCeecceEEEEEecChhhhccccccccccccccccccccccccccc
Confidence 4554 4589999999999999999999999999999999999999320
Q ss_pred --------------------------------------------------------------------------------
Q psy18041 53 -------------------------------------------------------------------------------- 52 (661)
Q Consensus 53 -------------------------------------------------------------------------------- 52 (661)
T Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~mpara~~~~~~~~~~~~~~~e~ 708 (765)
T PLN03185 629 ELSYPEGLVLVPRGADDGSTVPGPHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNMPARAERIPGREDKEKQSFHEV 708 (765)
T ss_pred ccccccccccccccccccccCCCcccccccccccccCchhhhhccccccccchhhcccCchhhhcccccccccccccCcc
Confidence
Q ss_pred --ceEEEEEeeccccCCHHHHHHHHHHHhhccCCCCCCCcccChhhHHHHHHHHHhhhhc
Q psy18041 53 --MELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYFL 110 (661)
Q Consensus 53 --~~y~~GIID~L~~y~~~Kk~E~~~K~~~~~~~~~~~iS~v~P~~Y~~RF~~~~~~~f~ 110 (661)
-+||+|||||||+|++.||+||++|++ .+ ++..||+|+|..|++||++||.++|.
T Consensus 709 ~d~~~~~giidilq~y~~~k~~eh~~k~~--~~-~~~~is~v~p~~y~~rf~~f~~~~f~ 765 (765)
T PLN03185 709 YDVVLYLGIIDILQEYNMSKKIEHAYKSL--QF-DSLSISAVDPTFYSKRFLEFIQKVFP 765 (765)
T ss_pred cceEEEEEEEEeecccchhHHHHHHHhhh--cc-CCCceeccChHHHHHHHHHHHHhhcC
Confidence 069999999999999999999999996 33 67899999999999999999999984
No 9
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=99.79 E-value=8.7e-20 Score=195.91 Aligned_cols=92 Identities=33% Similarity=0.460 Sum_probs=86.4
Q ss_pred cCCCCceeEEEcCCCCceEEEEEcHHHHHHHHHhhCCCChhhHHHhhccccc-ccCCCCccCCceeeecCCcEEEEecCH
Q psy18041 568 ECKIPHIDIKFSDTAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIR-WEARGGKSGSNFCKTKDDRFILKEMSR 646 (661)
Q Consensus 568 ~~~~~h~~~~f~~~~~~f~~~~y~~~~F~~lR~~~~~~~~~~~i~SLsr~~~-w~a~gGKSgs~F~kt~DdRfiiK~is~ 646 (661)
.....|+++++.++.+.|+|++|||++|++||++++.+ +++|++||++|.. |.++||||||.||+|.|+|||||+|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~Y~P~~F~~lR~~~~i~-~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti~~ 91 (342)
T smart00330 13 FPTPGHLELTPSHGSADFKFKDYCPEVFRNLRELFGID-PADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSK 91 (342)
T ss_pred ecCCCcccccCCCCCccEEEEEeCHHHHHHHHHHcCCC-HHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEecCH
Confidence 34557788999999999999999999999999998874 9999999999996 999999999999999999999999999
Q ss_pred HHHHHHHhhccCCC
Q psy18041 647 LEMDSFLTFVFPEH 660 (661)
Q Consensus 647 ~E~~~f~~~a~~~~ 660 (661)
.|++.|++++|.||
T Consensus 92 ~E~~~l~~~lp~Y~ 105 (342)
T smart00330 92 SEIKSLLPMLPNYY 105 (342)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999997
No 10
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=99.77 E-value=3.3e-19 Score=189.25 Aligned_cols=78 Identities=44% Similarity=0.692 Sum_probs=74.0
Q ss_pred CCceEEEEEcHHHHHHHHHhhCCCChhhHHHhhcccccccCC-CCccCCceeeecCCcEEEEecCHHHHHHHHhhccCCC
Q psy18041 582 AANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEAR-GGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFVFPEH 660 (661)
Q Consensus 582 ~~~f~~~~y~~~~F~~lR~~~~~~~~~~~i~SLsr~~~w~a~-gGKSgs~F~kt~DdRfiiK~is~~E~~~f~~~a~~~~ 660 (661)
...|+|++|||.+|++||++|+.+ +++|++||++|..|..+ ||||||.||+|.|+|||||+|+++|++.|++++|.||
T Consensus 54 ~~~f~fk~Y~P~vF~~lR~~~gi~-~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~ 132 (313)
T cd00139 54 SADFKFKDYCPEVFRALRELFGID-EADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYY 132 (313)
T ss_pred CccEEEEEeCHHHHHHHHHHcCCC-HHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 467899999999999999999874 99999999999999865 9999999999999999999999999999999999997
No 11
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=99.73 E-value=4.9e-19 Score=191.25 Aligned_cols=116 Identities=41% Similarity=0.633 Sum_probs=105.2
Q ss_pred CcccccCCceeeCcchHHHHHHHHHhHHHhhhcCcccccceeEEEeccCceEEEE-Eeecccc-CCHHHHHHHHHHHhhc
Q psy18041 4 PCNMISESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTNMELVVG-MIDYIRT-FTWDKKIETMVKKSGL 81 (661)
Q Consensus 4 d~~~~~~~~l~l~~~~~~~l~~~L~~D~~FL~~~~imDYSLLvgi~~~~~~y~~G-IID~L~~-y~~~Kk~E~~~K~~~~ 81 (661)
|.|||++.++.+-...|+.|+.||++|++||+++|||||||||||++..+...+| |||+.+. ++|+|++|-++|-.+.
T Consensus 487 dv~wI~es~~~~~g~~Kk~~~sqv~~Dv~fLsklniMDYSllVgi~~~~~~~~V~~I~d~i~t~~t~Dk~~~~gI~d~lt 566 (612)
T COG5253 487 DVEWIRESPKIVFGLKKKLLLSQVWNDVLFLSKLNIMDYSLLVGIDDEREEASVGLIIDFIRTRMTGDKKLESGIKDKLT 566 (612)
T ss_pred hHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHHhCccceeEEEEeccchhhcchHHHHhhhccccccceeeeeehhhhhc
Confidence 4589988888888899999999999999999999999999999999999999999 9999998 9999999999998744
Q ss_pred cCCC--CCCCcccChhhHHHHHHHHHhhhhccCCCcccCC
Q psy18041 82 LGGQ--GKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWSGL 119 (661)
Q Consensus 82 ~~~~--~~~iS~v~P~~Y~~RF~~~~~~~f~~~p~~~~~~ 119 (661)
.++- ..++++|+|.+|+.||.+||+.|+...|++|+.-
T Consensus 567 ~~s~~k~~~~t~v~p~~y~nrf~~~~e~yi~~~p~~~~~~ 606 (612)
T COG5253 567 VGSFTKRKEPTAVTPRQYKNRFRKAMEAYIDPFPDKKTQE 606 (612)
T ss_pred cceeeecccceecCHHHHHHHHHHhHHHhhhcccchhhhc
Confidence 4321 3789999999999999999999999999998754
No 12
>KOG0229|consensus
Probab=99.65 E-value=5.8e-17 Score=174.21 Aligned_cols=77 Identities=29% Similarity=0.410 Sum_probs=73.0
Q ss_pred CceEEEEEcHHHHHHHHHhhCCCChhhHHHhhccccccc--CCCCccCCceeeecCCcEEEEecCHHHHHHHHhhccCCC
Q psy18041 583 ANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWE--ARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFVFPEH 660 (661)
Q Consensus 583 ~~f~~~~y~~~~F~~lR~~~~~~~~~~~i~SLsr~~~w~--a~gGKSgs~F~kt~DdRfiiK~is~~E~~~f~~~a~~~~ 660 (661)
+.|++|.|||.+||+||++|+.+ ++||+.|||+...-. .+||||||.||.|+|||||||+|.++|++-+++++|.||
T Consensus 96 ~~Fk~KdYcP~vFR~lRelFgId-~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy 174 (420)
T KOG0229|consen 96 SDFKFKDYCPMVFRNLRELFGID-PADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYY 174 (420)
T ss_pred cccchhhcChHHHHHHHHHhCCC-hHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHH
Confidence 46799999999999999999885 999999999998776 888999999999999999999999999999999999998
No 13
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.65 E-value=1.6e-16 Score=183.92 Aligned_cols=77 Identities=27% Similarity=0.423 Sum_probs=72.0
Q ss_pred CceEEEEEcHHHHHHHHHhhCCCChhhHHHhhcccccc--cCCCCccCCceeeecCCcEEEEecCHHHHHHHHhhccCCC
Q psy18041 583 ANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRW--EARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFVFPEH 660 (661)
Q Consensus 583 ~~f~~~~y~~~~F~~lR~~~~~~~~~~~i~SLsr~~~w--~a~gGKSgs~F~kt~DdRfiiK~is~~E~~~f~~~a~~~~ 660 (661)
..|++|.|||.+|++||++|+.+ +++|+.||+++.+| .++||||||+||+|.|+|||||+|+++|++.|+++||.||
T Consensus 402 ~~fkfkdY~P~vFr~LR~~fgId-~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~~~l~~iLp~Y~ 480 (765)
T PLN03185 402 EDFKWKDYCPMVFRNLREMFKID-AADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPDYH 480 (765)
T ss_pred CceEEEEECHHHHHHHHHHhCCC-HHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 35899999999999999999885 99999999988665 4899999999999999999999999999999999999997
No 14
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=24.27 E-value=49 Score=26.89 Aligned_cols=20 Identities=20% Similarity=0.564 Sum_probs=15.8
Q ss_pred EEeeCCCCCCCCCceecchh
Q psy18041 247 MWNWCPSCKQVSSILPMSSD 266 (661)
Q Consensus 247 mWs~C~~C~~~Tp~vpmS~~ 266 (661)
-|-.|+.|+..|......|-
T Consensus 3 ~Wi~CP~CgnKTR~kir~DT 22 (55)
T PF14205_consen 3 EWILCPICGNKTRLKIREDT 22 (55)
T ss_pred eEEECCCCCCccceeeecCc
Confidence 49999999998887665553
No 15
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=24.13 E-value=37 Score=33.74 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=32.8
Q ss_pred CCCceeEEEcCCCCceEEEEEcHHHHH---HHHHhhCCCChhhHHHhhcccccccCCCCccCCceeeecCCcEEEE
Q psy18041 570 KIPHIDIKFSDTAANFSVKMYFADLFA---ELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILK 642 (661)
Q Consensus 570 ~~~h~~~~f~~~~~~f~~~~y~~~~F~---~lR~~~~~~~~~~~i~SLsr~~~w~a~gGKSgs~F~kt~DdRfiiK 642 (661)
-..||+ .|... .++-|||.-=. .|..+.--- |-|-+. ......|+-++-||+|-|.||||=
T Consensus 90 LKQHik-d~tEP----avkkYyP~TTnld~~lK~RlnL~-EgDPVi------S~GDt~GRRaALFYRtSdEr~ill 153 (230)
T PF12226_consen 90 LKQHIK-DFTEP----AVKKYYPGTTNLDQQLKDRLNLT-EGDPVI------SMGDTTGRRAALFYRTSDERYILL 153 (230)
T ss_dssp HTTTTT--TTST----TEEEB-GGG--S-HHHHHHHT---TT-EEE------EEEETT--EEEEEEETTTTEEEEE
T ss_pred HHHhcc-cccch----hhhhcCCCCccHHHHHHHhhccc-cCCcee------eecCCCCceEEEEEeccCceEEEE
Confidence 345665 33332 57889986422 344443221 333332 334667899999999999999984
No 16
>KOG2129|consensus
Probab=21.42 E-value=3e+02 Score=31.25 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=12.7
Q ss_pred chhhhHHHHHHHHHHHHHHH
Q psy18041 406 NLWNLEDSIVKLKRAVVESI 425 (661)
Q Consensus 406 ~~~~~~d~l~~l~r~l~~~~ 425 (661)
.+|+-.|.|+.=+|.|+..+
T Consensus 205 ~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 205 SLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46666666666666666654
No 17
>PF01586 Basic: Myogenic Basic domain; InterPro: IPR002546 This basic domain is found in the MyoD family of muscle specific proteins that control muscle development. The bHLH region of the MyoD family includes the basic domain and the Helix-loop-helix (HLH) motif. The bHLH region mediates specific DNA binding []. With 12 residues of the basic domain involved in DNA binding []. The basic domain forms an extended alpha helix in the structure.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007517 muscle organ development, 0005634 nucleus; PDB: 1MDY_C.
Probab=21.20 E-value=32 Score=30.51 Aligned_cols=17 Identities=24% Similarity=0.890 Sum_probs=1.3
Q ss_pred CCcEEEEeeCCCCCCCCC
Q psy18041 242 DERIIMWNWCPSCKQVSS 259 (661)
Q Consensus 242 ~~~I~mWs~C~~C~~~Tp 259 (661)
.++=|+|. ||.||+.|-
T Consensus 67 ~G~CL~WA-CKaCKRKt~ 83 (86)
T PF01586_consen 67 PGQCLLWA-CKACKRKTV 83 (86)
T ss_dssp -------------S---T
T ss_pred CCcchHHH-hHhhhccCc
Confidence 36799998 999998764
No 18
>KOG2150|consensus
Probab=20.64 E-value=4.3e+02 Score=31.17 Aligned_cols=46 Identities=26% Similarity=0.365 Sum_probs=31.7
Q ss_pred hHHHHHHHHHH---HHHHHHHHHHHHHhhccccccccchHHHHHHHHHH
Q psy18041 341 GLFEEVKKWSL---MGQEVFSIVLEKLHTNQTDATMNTLQPLLVKDQAN 386 (661)
Q Consensus 341 ~l~~e~~~~~~---k~~~~f~~I~~rL~~l~~d~~~~~l~~~l~~e~~~ 386 (661)
-|+.||..++. .|.++|++|.+++..-...+.-+.++.-|.+|...
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKK 53 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKK 53 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Confidence 46788887764 56889999999998766444335566556555433
No 19
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.11 E-value=3.8e+02 Score=29.81 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=36.2
Q ss_pred EEEecCCceeeecCCccchhhH--HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy18041 321 YEVCIPSTTLKKSLSTFDKNGL--FEEVKKWSLMGQEVFSIVLEKLHTNQTDA 371 (661)
Q Consensus 321 ~ev~~Pp~~l~~~~~~~~~~~l--~~e~~~~~~k~~~~f~~I~~rL~~l~~d~ 371 (661)
+|-+.|..++.++.+. ++|. .+.++.........+..+...|.++..+.
T Consensus 200 vERV~PqLKv~~~~d~--kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i 250 (359)
T PF10498_consen 200 VERVLPQLKVTIRADA--KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDI 250 (359)
T ss_pred HHHHhhhheeeccCCc--chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3567899999999874 6675 56677777777777777777777766553
Done!