Query psy18041
Match_columns 661
No_of_seqs 307 out of 855
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 20:59:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 99.9 9.4E-28 3.2E-32 259.9 5.8 105 3-109 223-394 (394)
2 2gk9_A Phosphatidylinositol-4- 99.9 2.2E-27 7.6E-32 257.0 4.1 106 3-110 212-392 (392)
3 2ybx_A Phosphatidylinositol-5- 99.8 9.9E-20 3.4E-24 197.3 7.2 77 583-660 75-152 (394)
4 2gk9_A Phosphatidylinositol-4- 99.8 5.2E-19 1.8E-23 191.6 6.9 75 583-660 67-141 (392)
5 3ts3_A Capsid polyprotein; vir 30.4 17 0.00057 34.6 1.3 50 586-642 116-168 (208)
6 1l6x_B Minimized B-domain of p 13.3 63 0.0021 22.7 0.9 18 14-31 17-34 (34)
7 2lw1_A ABC transporter ATP-bin 12.4 4.9E+02 0.017 21.5 6.6 52 379-430 26-81 (89)
8 3pz8_A Segment polarity protei 12.1 2.7E+02 0.0093 24.4 4.9 55 183-249 27-83 (106)
9 2kwh_A RAla-binding protein 1; 8.7 6.4E+02 0.022 19.6 5.3 34 389-422 17-54 (56)
10 2fm8_A Surface presentation of 8.2 1.2E+02 0.0039 27.9 1.1 44 207-254 18-61 (135)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=99.94 E-value=9.4e-28 Score=259.93 Aligned_cols=105 Identities=28% Similarity=0.507 Sum_probs=80.6
Q ss_pred CCcccc-cCCceeeCcchHHHHHHHHHhHHHhhhcCcccccceeEEEeccC-----------------------------
Q psy18041 3 LPCNMI-SESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTN----------------------------- 52 (661)
Q Consensus 3 ld~~~~-~~~~l~l~~~~~~~l~~~L~~D~~FL~~~~imDYSLLvgi~~~~----------------------------- 52 (661)
+|+||+ .+.+|+|+++.|+.|++||++||+||+++||||||||||||..+
T Consensus 223 kD~df~~~~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 302 (394)
T 2ybx_A 223 KDNDFINEGQKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVECEENDGEEEGESDGTHPVGTP 302 (394)
T ss_dssp CHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTEESCEEEEEEEEHHHHHHHHHCC--------------------
T ss_pred cccchHhcCCeEEECHHHHHHHHHHHHHHHHHHHHCCCccceeEEEEecccccchhhccccccccccccccccccccCCC
Confidence 689998 47899999999999999999999999999999999999998631
Q ss_pred -------------------------------------ceEEEEEeeccccCCHHHHHHHHHHHhhccCCCCCCCcccChh
Q psy18041 53 -------------------------------------MELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPD 95 (661)
Q Consensus 53 -------------------------------------~~y~~GIID~L~~y~~~Kk~E~~~K~~~~~~~~~~~iS~v~P~ 95 (661)
.+||||||||||+|||+||+||++|++ .++.+.+||+|+|+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyyiGIIDiLq~Y~~~KklE~~~Ks~--~~~~~~~iS~V~P~ 380 (394)
T 2ybx_A 303 PDSPGNTLNSSPPLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIXILTHYDAKKKAAHAAKTV--KHGAGAEISTVNPE 380 (394)
T ss_dssp ------------CCCTTCCCTTTSTTEEECCTTCSSCEEEEEEEECCCEESCC---------------------CCCCHH
T ss_pred ccccccccccccccccccccccccccccccccCCCCceEEEEEEEEeeecCChhHHHHHHHHHh--ccCCCCCCceECHH
Confidence 279999999999999999999999996 45545689999999
Q ss_pred hHHHHHHHHHhhhh
Q psy18041 96 EYRKRFQSAMNRYF 109 (661)
Q Consensus 96 ~Y~~RF~~~~~~~f 109 (661)
+|++||++||.++|
T Consensus 381 ~Y~~RF~~fm~~if 394 (394)
T 2ybx_A 381 QYSKRFLDFIGHIL 394 (394)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999986
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.2e-27 Score=257.03 Aligned_cols=106 Identities=30% Similarity=0.528 Sum_probs=63.8
Q ss_pred CCccccc-CCceeeCcchHHHHHHHHHhHHHhhhcCcccccceeEEEeccC-----------------------------
Q psy18041 3 LPCNMIS-ESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTN----------------------------- 52 (661)
Q Consensus 3 ld~~~~~-~~~l~l~~~~~~~l~~~L~~D~~FL~~~~imDYSLLvgi~~~~----------------------------- 52 (661)
+|+||+. +.+|+|+++.|+.|++||++||+||+++||||||||||||..+
T Consensus 212 kD~df~~~~~~i~l~~~~k~~l~~~l~~D~~FL~~~~iMDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (392)
T 2gk9_A 212 RDMDFLNKNQKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPA 291 (392)
T ss_dssp BTTC--CCCCCCCC----CHHHHHHHHHHHHHHHHTTCCCCCEECCCBCC------------------------------
T ss_pred cccchhhcCCeEEECHHHHHHHHHHHHHHHHHHHHcCCccceeEEeeecccccccccccccccccccccccccccccccc
Confidence 6999984 6899999999999999999999999999999999999998731
Q ss_pred ---------------------------------------------ceEEEEEeeccccCCHHHHHHHHHHHhhccCCCCC
Q psy18041 53 ---------------------------------------------MELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGK 87 (661)
Q Consensus 53 ---------------------------------------------~~y~~GIID~L~~y~~~Kk~E~~~K~~~~~~~~~~ 87 (661)
.+||||||||||+|||+||+||++|++ .++.+.
T Consensus 292 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyylGIIDiLq~Y~~~KklE~~~Ks~--~~~~~~ 369 (392)
T 2gk9_A 292 LVGSYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKTV--KHGAGA 369 (392)
T ss_dssp ---------------------------------------------CBCCCEECCCC------------------------
T ss_pred cccccCCCcccccccccccccccccccccccccccccccccCCCceEEEEEEEEeeeeCChhHHHHHHHHHh--ccCCCC
Confidence 158999999999999999999999996 555456
Q ss_pred CCcccChhhHHHHHHHHHhhhhc
Q psy18041 88 LPTIVSPDEYRKRFQSAMNRYFL 110 (661)
Q Consensus 88 ~iS~v~P~~Y~~RF~~~~~~~f~ 110 (661)
+||+|+|.+|++||++||.++|.
T Consensus 370 ~iS~v~P~~Y~~RF~~fm~~~~~ 392 (392)
T 2gk9_A 370 EISTVHPEQYAKRFLDFITNIFA 392 (392)
T ss_dssp -----CHHHHHHHHHHHTC----
T ss_pred CCceECHHHHHHHHHHHHHHhhC
Confidence 89999999999999999999873
No 3
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=99.78 E-value=9.9e-20 Score=197.26 Aligned_cols=77 Identities=23% Similarity=0.421 Sum_probs=68.8
Q ss_pred CceEEEEEcHHHHHHHHHhhCCCChhhHHHhhcccccc-cCCCCccCCceeeecCCcEEEEecCHHHHHHHHhhccCCC
Q psy18041 583 ANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRW-EARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFVFPEH 660 (661)
Q Consensus 583 ~~f~~~~y~~~~F~~lR~~~~~~~~~~~i~SLsr~~~w-~a~gGKSgs~F~kt~DdRfiiK~is~~E~~~f~~~a~~~~ 660 (661)
.+|+|++|||.+|++||++|+.+ +++|++||++|.+| .++||||||.||+|.|+|||||+|+++|++.|++|||.||
T Consensus 75 ~~f~~k~Y~P~~F~~LR~~~~i~-~~dy~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~ 152 (394)
T 2ybx_A 75 SHFKFKEYCPMVFRNLRERFGID-DQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYH 152 (394)
T ss_dssp SEEEEEEESHHHHHHHHHHTTCC-HHHHHHHHHSSCCEECC-----CCCEEECTTSSEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECHHHHHHHHHHhCCC-HHHHHHHhcCCCccccCCCCCccCEEEEeCCCcEEEEeeCHHHHHHHHHHHHHHH
Confidence 57999999999999999998874 99999999999997 6999999999999999999999999999999999999996
No 4
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=99.75 E-value=5.2e-19 Score=191.62 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=67.3
Q ss_pred CceEEEEEcHHHHHHHHHhhCCCChhhHHHhhcccccccCCCCccCCceeeecCCcEEEEecCHHHHHHHHhhccCCC
Q psy18041 583 ANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTFVFPEH 660 (661)
Q Consensus 583 ~~f~~~~y~~~~F~~lR~~~~~~~~~~~i~SLsr~~~w~a~gGKSgs~F~kt~DdRfiiK~is~~E~~~f~~~a~~~~ 660 (661)
.+|+|++|||.+|++||++|+.+ +++|++||++|.+|. +||||| .||+|.|+|||||+|+++|++.|++|||.||
T Consensus 67 ~~f~~k~Y~P~~F~~LR~~~~i~-~~dy~~Sl~~~~~~~-s~GKSG-~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~ 141 (392)
T 2gk9_A 67 SHFKFKEYCPQVFRNLRDRFGID-DQDYLVSLTRNPPSE-SEGSDG-RFLISYDRTLVIKEVSSEDIADMHSNLSNYH 141 (392)
T ss_dssp SSBEEEEESHHHHHHHHHTTTCC-HHHHHHHHHSSCCCC-CC------CCCCTTSSEEEEECCHHHHHHHHHHHHHHH
T ss_pred CceEEEEECHHHHHHHHHHhCCC-HHHHHHHhcCCCccc-CCCCcc-eEEEcCCCcEEEEeeCHHHHHHHHHHHHHHH
Confidence 57999999999999999998874 899999999999999 999999 9999999999999999999999999999996
No 5
>3ts3_A Capsid polyprotein; virus protein, projection domain, astrovirus capsid, viral P; 1.49A {Turkey astrovirus 2}
Probab=30.35 E-value=17 Score=34.64 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=31.7
Q ss_pred EEEEEcHHHH---HHHHHhhCCCChhhHHHhhcccccccCCCCccCCceeeecCCcEEEE
Q psy18041 586 SVKMYFADLF---AELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILK 642 (661)
Q Consensus 586 ~~~~y~~~~F---~~lR~~~~~~~~~~~i~SLsr~~~w~a~gGKSgs~F~kt~DdRfiiK 642 (661)
.++-|||.-= ..|..+.--. |-|-+. ......|+-++-||+|-|+||||=
T Consensus 116 avkkyyP~Ttn~dq~lk~r~nl~-egDpvi------smgdt~Grraalfyrtsder~ill 168 (208)
T 3ts3_A 116 AIQKYYPGTTNLDEQLKQRLNLA-EGDPVI------SMGDTNGRRAALFYRTSDEKYILF 168 (208)
T ss_dssp TEEEBCGGGCCSCHHHHHHHCCC-TTCEEE------EEEETTCCEEEEEEETTTTEEEEE
T ss_pred hhhhcCCCccchhhhhhhhhccc-cCCcee------eecccCCceeeeeeeccCceEEEE
Confidence 5678888532 1244443221 333332 334667889999999999999985
No 6
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=13.29 E-value=63 Score=22.74 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=15.7
Q ss_pred eeCcchHHHHHHHHHhHH
Q psy18041 14 YIHPHSKFILMQAINNDT 31 (661)
Q Consensus 14 ~l~~~~~~~l~~~L~~D~ 31 (661)
.|++++|..++++|+.||
T Consensus 17 nLtEeQrn~yI~slkdd~ 34 (34)
T 1l6x_B 17 NLNEEQRNAKIKSIRDDC 34 (34)
T ss_dssp TCCHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHhHHHHHhccC
Confidence 367899999999999986
No 7
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=12.40 E-value=4.9e+02 Score=21.47 Aligned_cols=52 Identities=12% Similarity=0.300 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCChhhhc----chhhhHHHHHHHHHHHHHHHHHHhh
Q psy18041 379 LLVKDQANLKQKVDDIQMKLTDPDVMN----NLWNLEDSIVKLKRAVVESINNWNS 430 (661)
Q Consensus 379 ~l~~e~~~f~~~i~~~~~~l~~~~~~~----~~~~~~d~l~~l~r~l~~~~~~Wn~ 430 (661)
.+..+...++..+..++..|..|.+.. .+..+...+..+...|......|..
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777777777765421 2333444567778888888888863
No 8
>3pz8_A Segment polarity protein dishevelled homolog DVL-; DIX domain, oligomerization, signaling protein; 2.87A {Mus musculus}
Probab=12.08 E-value=2.7e+02 Score=24.44 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCCccHHHHHHHHhccc--CCCCCCCCCCCCcccceeEEEECCeEEEEEeeecCCCCCCCCCCcEEEEe
Q psy18041 183 RNDIPLGSFLEKYCFRR--DYKCPSATCLIPTLEHERWFIHGNGSVCVGLCEIENRPPEAYDERIIMWN 249 (661)
Q Consensus 183 ~~D~tLG~FLe~~c~~~--~~~Cps~~C~~pm~~H~r~yvH~~g~i~I~v~~~~~~~lp~~~~~I~mWs 249 (661)
...+|||+|=+.+=.+. +|.= +.+..=...|.|.--|..-... ||..+|+|+-|-
T Consensus 27 ~~~iTL~dFK~~l~kr~~~nYry-----------fFK~~d~dfgvVkeEI~dD~~~-LP~~eGkIv~wl 83 (106)
T 3pz8_A 27 PERVTLADFKNVLSNRPVHAYKF-----------FFKSMDQDFGVVKEEIFDDNAK-LPCFNGRVVSWL 83 (106)
T ss_dssp SSSCBHHHHHHTCTTSCGGGBCC-----------EEEEEETTTEEEEEECCCTTCB-CCCBTTBEEEEC
T ss_pred cccccHHHHHHHHhcCCCccceE-----------EEeecCcccCeeeeEecCCccc-ccccCCEEEEEE
Confidence 35899999976542222 3332 3444444445544444444444 899999999995
No 9
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=8.66 E-value=6.4e+02 Score=19.63 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=22.5
Q ss_pred HHHHHHHhhhCChhhh----cchhhhHHHHHHHHHHHH
Q psy18041 389 QKVDDIQMKLTDPDVM----NNLWNLEDSIVKLKRAVV 422 (661)
Q Consensus 389 ~~i~~~~~~l~~~~~~----~~~~~~~d~l~~l~r~l~ 422 (661)
..+..+|..+.....+ ..+|.+-..|..|||-|-
T Consensus 17 ~lL~~LH~e~~ag~~~~~~eE~lWeVQriiTqLKRKLk 54 (56)
T 2kwh_A 17 FLLNSLHRDLQGGIKDLSKEERLWEVQRILTALKRKLR 54 (56)
T ss_dssp HHHHHHHHTTCSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHc
Confidence 3566777766543222 268988888888888764
No 10
>2fm8_A Surface presentation of antigens protein SPAK; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: d.198.1.1
Probab=8.21 E-value=1.2e+02 Score=27.89 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=28.1
Q ss_pred CCCCCcccceeEEEECCeEEEEEeeecCCCCCCCCCCcEEEEeeCCCC
Q psy18041 207 TCLIPTLEHERWFIHGNGSVCVGLCEIENRPPEAYDERIIMWNWCPSC 254 (661)
Q Consensus 207 ~C~~pm~~H~r~yvH~~g~i~I~v~~~~~~~lp~~~~~I~mWs~C~~C 254 (661)
+|..-+..+ .+.+..|++.++..|.-.+.-.++.||+|+.=..|
T Consensus 18 Gc~~~li~~----Ld~HStI~L~l~d~P~I~I~~~~D~vwiWs~L~~~ 61 (135)
T 2fm8_A 18 GCDPSLIGG----IDSHSTIVLDLFALPSICISVKDDDVWIWAQLGAD 61 (135)
T ss_dssp TCCGGGBCC----CCSSSEEEEEESSSCCEEEEEETTEEEEEEECCTT
T ss_pred CCChhHhhc----cCCcCcEEeecCCCCCeeEEecCCcEEEEEeCCcc
Confidence 566556655 77888899988854432233345678888754444
Done!