RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18041
(661 letters)
>gnl|CDD|238081 cd00139, PIPKc, Phosphatidylinositol phosphate kinases (PIPK)
catalyze the phosphorylation of phosphatidylinositol
phosphate on the fourth or fifth hydroxyl of the
inositol ring, to form phosphatidylinositol
bisphosphate. CD alignment includes type II
phosphatidylinositol phosphate kinases (PIPKII-beta),
type I andII PIPK (-alpha, -beta, and -gamma) kinases
and related yeast Fab1p and Mss4p kinases. Signaling by
phosphorylated species of phosphatidylinositol regulates
secretion, vesicular trafficking, membrane
translocation, cell adhesion, chemotaxis, DNA synthesis,
and cell cycling. The catalytic core domains of PIPKs
are structurally similar to PI3K, PI4K, and
cAMP-dependent protein kinases (PKA), the dimerization
region is a unique feature of the PIPKs.
Length = 313
Score = 142 bits (361), Expect = 6e-38
Identities = 50/102 (49%), Positives = 71/102 (69%), Gaps = 2/102 (1%)
Query: 9 SESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTNMELVVGMIDYIRTFTW 68
E PL++ HSK L+ I D +FL + ++MDYSLL+GI D + L +G+ID +RT+TW
Sbjct: 214 IEQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTW 273
Query: 69 DKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYFL 110
DKK+E VK G G GK P++VSP++Y KRF+ M++YFL
Sbjct: 274 DKKLEHWVKSLGHDG--GKTPSVVSPEQYAKRFREFMDKYFL 313
Score = 92.0 bits (229), Expect = 2e-20
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 578 FSDTAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEAR-GGKSGSNFCKTKD 636
+A+F K Y ++F LR+ E ++RSL R WE GGKSGS F KT D
Sbjct: 50 PPHLSADFKFKDYCPEVFRALRELFGI-DEADYLRSLCRSPLWELSSGGKSGSFFYKTLD 108
Query: 637 DRFILKEMSRLEMDSFLTF 655
DRFI+K +S E++S L F
Sbjct: 109 DRFIIKTVSHSEIESLLKF 127
>gnl|CDD|216538 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-Kinase. This
family contains a region from the common kinase core
found in the type I phosphatidylinositol-4-phosphate
5-kinase (PIP5K) family as described in. The family
consists of various type I, II and III PIP5K enzymes.
PIP5K catalyzes the formation of
phosphoinositol-4,5-bisphosphate via the phosphorylation
of phosphatidylinositol-4-phosphate a precursor in the
phosphinositide signaling pathway.
Length = 255
Score = 121 bits (306), Expect = 6e-31
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 32/130 (24%)
Query: 10 ESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDD------------------- 50
P+++ P K +L++ + D +FL + ++MDYSLL+GI
Sbjct: 128 GRPIFLGPEKKKLLLEQLKRDCEFLESLNIMDYSLLVGIHRVEDEDSEEGAAEASGEFDL 187
Query: 51 -----------TNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRK 99
N +G+ID + +TWDKK+E VK L G+ +IV P EY K
Sbjct: 188 DEGGIRAGDDPENEIYYIGIIDILTPYTWDKKLEHFVKSLLYLDGKT--ISIVPPKEYAK 245
Query: 100 RFQSAMNRYF 109
RF + +YF
Sbjct: 246 RFLKFIEKYF 255
Score = 58.8 bits (143), Expect = 1e-09
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 612 RSLSR--CIRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTF 655
SL + + GGKSGS F K++DDRFI+K + + E+ L F
Sbjct: 1 MSLCGLDTLSELSSGGKSGSFFYKSRDDRFIIKTIKKSEVKFLLKF 46
>gnl|CDD|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases.
Length = 342
Score = 92.1 bits (229), Expect = 3e-20
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 572 PHIDIKFSDTAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRC-IRWEARGGKSGSN 630
H+++ S +A+F K Y ++F LR+ ++RSL R + GGKSGS
Sbjct: 17 GHLELTPSHGSADFKFKDYCPEVFRNLRELFGI-DPADYLRSLCRSPPLELSSGGKSGSF 75
Query: 631 FCKTKDDRFILKEMSRLEMDSFLTFVF 657
F + DDRFI+K +S+ E+ S L +
Sbjct: 76 FYLSLDDRFIIKTVSKSEIKSLLPMLP 102
Score = 74.7 bits (184), Expect = 2e-14
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 47 GIDDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMN 106
I + L +G+ID ++T+TWDKK+E VK G GK ++V P++Y KRF+ M+
Sbjct: 283 AIRARRVVLYLGIIDILQTYTWDKKLEHWVKSIGHD---GKTISVVHPEQYAKRFRDFMD 339
Query: 107 RYF 109
+YF
Sbjct: 340 KYF 342
Score = 61.2 bits (149), Expect = 5e-10
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 10 ESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTN 52
P+Y+ P +K L++ I D +FL + +MDYSLL+GI D
Sbjct: 186 NQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIE 228
>gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal
transduction mechanisms].
Length = 612
Score = 91.5 bits (227), Expect = 3e-19
Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 6 NMISESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTNMELVVGMI-DYIR 64
I ESP + K +L+ + ND FL+ ++MDYSLL+GIDD E VG+I D+IR
Sbjct: 489 EWIRESPKIVFGLKKKLLLSQVWNDVLFLSKLNIMDYSLLVGIDDEREEASVGLIIDFIR 548
Query: 65 T-FTWDKKIETMVKKSGLLGG--QGKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWSG 118
T T DKK+E+ +K +G + K PT V+P +Y+ RF+ AM Y PD+ +
Sbjct: 549 TRMTGDKKLESGIKDKLTVGSFTKRKEPTAVTPRQYKNRFRKAMEAYIDPFPDKKTQ 605
Score = 76.9 bits (189), Expect = 1e-14
Identities = 53/155 (34%), Positives = 74/155 (47%), Gaps = 40/155 (25%)
Query: 531 VVVYEQEPSSIISYALSSFDYQYKLEE----------------LKAAHE----------- 563
V++ E EPSS+I++ LS+ DY+ K+ L+ H
Sbjct: 246 VIIREDEPSSLIAFCLSTSDYRNKMMRLRDSETMDERLLNGMPLEGGHRNPQESYNMLTG 305
Query: 564 IETNECKIPHIDIKFSDTAAN---------FSVKMYFADLFAELRK-FSCPEGEESFIRS 613
I +I I IK +DT N FS K YF ++F ELR C +E+ +
Sbjct: 306 IRVTLSRIEEIMIKKTDTHLNEQFEEGLYEFSCKDYFPEVFRELRALCGC---DEALVSL 362
Query: 614 LSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLE 648
LSR I WE+ GGKSGS F T+D +FI+K +S E
Sbjct: 363 LSRYILWESNGGKSGSFFLFTRDYKFIIKTISHSE 397
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 42.1 bits (99), Expect = 0.001
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 14 YIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGI 48
Y+ P + L++ I D++FL Q +MDYSLLLG+
Sbjct: 559 YLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGV 593
Score = 34.0 bits (78), Expect = 0.28
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 625 GKSGSNFCKTKDDRFILKEMSRLEMDSFL 653
GKSGS F ++DDRF++K + + E+ L
Sbjct: 445 GKSGSVFFLSQDDRFMIKTLRKSEVKVLL 473
>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41. This
family of glycosyltransferases includes O-linked
beta-N-acetylglucosamine (O-GlcNAc) transferase, an
enzyme which catalyzes the addition of O-GlcNAc to
serine and threonine residues. In addition to its
function as an O-GlcNAc transferase, human OGT, also
appears to proteolytically cleave the epigenetic
cell-cycle regulator HCF-1.
Length = 468
Score = 31.7 bits (72), Expect = 1.2
Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 19/141 (13%)
Query: 433 MKTRPKTKSTDSSKSLLTDIVEGTPTTETSTEYVFDSEESEESDVDHVDDSDTVKTKV-- 490
+K R K + + IV + + + D + E VD D+V T+V
Sbjct: 160 LKERVIVKFKSNGRIYDNSIVINGIDLKPLLDKLEDVKIVREKVVDAGSKRDSVSTEVNL 219
Query: 491 ---------PRMKAILSQLLPTNVPSLPISNSLVEAQQHHTLALGCSVP---VVVYEQE- 537
P ++ I + + + +PI N L Q ++ A G VP +V Q+
Sbjct: 220 PVIEVPTTEPVIQMINTGQIQITINGVPIQNGLATTQTNNKAATGEEVPRTIIVTTRQQY 279
Query: 538 --PSSIISYALSSFDYQYKLE 556
P I Y +F+ YK++
Sbjct: 280 GLPDDAIVYC--NFNQLYKID 298
>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
Length = 334
Score = 31.4 bits (71), Expect = 1.6
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 89 PTIVSPDEYRKRFQSAMNRYFLGVPDRWSGLT--PSSKKLSPPPTVAPPAPVST 140
+ + Q G P +++ L P+ + L+PPPT+ P PVS+
Sbjct: 252 SSQRLDENTSDDDQFYKRTSLAGDPYKYNTLPPLPAQRNLTPPPTLYPQQPVSS 305
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 30.4 bits (69), Expect = 2.7
Identities = 38/209 (18%), Positives = 64/209 (30%), Gaps = 35/209 (16%)
Query: 347 KKWSLMGQEVFSIVLEKLHTNQTDATMNTLQPLLVKDQANLKQKVDD--IQMKLTDPDVM 404
KKW+++G EV+ + + L+ + + L+ K+ ++ +L
Sbjct: 48 KKWAIVGVEVYERTGKLVSVKD-------LRKIFKTAKDVLRNKLRTCIVRKRLDRAATE 100
Query: 405 NNLWNLEDSIVKLKRAVVESINNWNSRLMKTRPKTKSTDSSKSLLTDIVEGTPTTETSTE 464
LW E R E++ + + L K D DI+ E T
Sbjct: 101 AELWKWE--FYPFFRYYRETLGQFEAELRKEP--WTGEDQEADDEDDII-YDGIFEDRTR 155
Query: 465 YVFDSEESEESDVDHV---------------------DDSDTVKTKVPRMKAILSQLLPT 503
D EE++E D V VK VP +A + P
Sbjct: 156 ESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQSVPAQQAPPNPQQPM 215
Query: 504 NVPSLPISNSLVEAQQHHTLALGCSVPVV 532
S + S + + S P
Sbjct: 216 PSASSESATSKSASTSRESSPQPQSPPPR 244
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 30.9 bits (71), Expect = 2.7
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 219 FIHGNGSV---CVG-LCEIENRPPEAYDERIIMWNWCPSCKQVSSILPMSSDTWRL 270
+I GNG + +G L E PEAYDER W LP+ + W+L
Sbjct: 28 YIEGNGYIVTWAIGHLLE--LAEPEAYDERYKRWRL--------EDLPIIPEKWKL 73
>gnl|CDD|218324 pfam04912, Dynamitin, Dynamitin. Dynamitin is a subunit of the
microtubule-dependent motor complex and in implicated in
cell adhesion by binding to macrophage-enriched
myristoylated alanine-rice C kinase substrate
(MacMARCKS).
Length = 376
Score = 30.5 bits (69), Expect = 3.2
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 16/91 (17%)
Query: 342 LFEEVKKWSLMGQEVFSIV-----LEKLHTN---------QTDATMNTLQPLLVKDQANL 387
L+E +KKW + +++ +V L+ LH + T T++ L NL
Sbjct: 288 LYEIMKKWDPVVEQLPDVVERLKTLKSLHEQASHFSQSLAHLETTQQTIESSL-ASNKNL 346
Query: 388 KQKVDDIQMKLTDPDVMNNLWNLEDSIVKLK 418
++V + K + +N+ LE + KL+
Sbjct: 347 LEEVQE-SFKQNLETIKDNVTKLEARVAKLQ 376
>gnl|CDD|151029 pfam10456, BAR_3_WASP_bdg, WASP-binding domain of Sorting nexin
protein. The C-terminal region of the Sorting nexin
group of proteins appears to carry a BAR-like
(Bin/amphiphysin/Rvs) domain. This domain is very
diverse and the similarities with other BAR domains are
few. In the Sorting nexins it is associated with family
PX, pfam00787.13, and in combination with PX appears to
be necessary to bind WASP along with p85 to form a
multimeric signalling complex.
Length = 237
Score = 29.7 bits (67), Expect = 3.7
Identities = 11/74 (14%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 265 SDTWRLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQVHYFAYNNIVASFIYTRIKLYEVC 324
+ ++S ++ C + + +H H ++ + + + + ++ +IK Y+
Sbjct: 168 VEEGKISQQDASTMKKRCNIMSYALQAEMNHFHSNRI--YDFKSQMQHYLEQQIKFYQKI 225
Query: 325 IPSTTLKKSLSTFD 338
+ L+++LS +D
Sbjct: 226 --AEKLEEALSRYD 237
>gnl|CDD|236902 PRK11372, PRK11372, lysozyme inhibitor; Provisional.
Length = 109
Score = 28.7 bits (64), Expect = 4.0
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 491 PRMKAILSQLLPTNVPSLPISNSLVEAQQHHTLALGC-SVPVVVYEQEPSSIISYALSSF 549
MK +L LP + N VE Q TL C P+ V P + SF
Sbjct: 1 MSMKKLLIICLPVLLTGCSAYNQFVERMQTDTLEYQCDEKPLTVKLNNPRQEV-----SF 55
Query: 550 DYQYKLEELK 559
Y +L LK
Sbjct: 56 VYDNQLLHLK 65
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 30.1 bits (68), Expect = 4.9
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 26/132 (19%)
Query: 367 NQTDATMNTLQPLLVKDQANL---------KQKVDDIQMKLTDPDVMNNLWNLEDSIVKL 417
NQ D+ + + + L K+ L +QKV+ ++ LTDP++ +L L+ + +
Sbjct: 532 NQADSLLYSYESTL-KENGELISEELKQRAEQKVEQLEAALTDPNI--SLEELKQQLEEF 588
Query: 418 KRAVVESINNWNSRLMKTRPKTKSTDSSKSLLTDIVEGTPTTETSTEYVFDSEESEESDV 477
++A++ + S TD VE T T + +E + +
Sbjct: 589 QQALLAI-------------GAEVYQQGGSQTTDTVEPTSDTLITATMNSSNETTLIDEF 635
Query: 478 DHV-DDSDTVKT 488
+ DD +TV +
Sbjct: 636 NFDFDDEETVAS 647
>gnl|CDD|177552 PHA03178, PHA03178, UL43 envelope protein; Provisional.
Length = 403
Score = 29.5 bits (66), Expect = 6.0
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 131 TVAPPAPVSTKIDALQPSNHQRLPVLIYICRSPIHSPGFCVEPCTINMDFYARNDIPLGS 190
P + + SN + P + C + H +E C + Y RN S
Sbjct: 271 HATPIIWIVLRALGYGGSNVWQTPAYVVFCVTVGHVSAMALEQCLV----YRRNYTAEAS 326
>gnl|CDD|214474 smart00022, PLAc, Cytoplasmic phospholipase A2, catalytic subunit.
Cytosolic phospholipases A2 hydrolyse arachidonyl
phospholipids. Family includes phospholipases B
isoforms.
Length = 549
Score = 29.3 bits (66), Expect = 7.2
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 399 TDPDVMNNLWNLEDSIVKLKRAVVESINNWNSRLMKTRPKTKSTDSSKSLLTDI 452
P+ +N+ W SI ++ + + S + K K + S LTDI
Sbjct: 141 KGPEEINSEWMFSVSINNPGINLLLTAQFYKSIVDAVWKK-KDAGFNIS-LTDI 192
>gnl|CDD|133135 cd06604, GH31_glucosidase_II_MalA, Alpha-glucosidase II
(alpha-D-glucoside glucohydrolase) is a glycosyl
hydrolase family 31 (GH31) enzyme, found in bacteria
and plants, which has exo-alpha-1,4-glucosidase and
oligo-1,6-glucosidase activities. Alpha-glucosidase II
has been characterized in Bacillus
thermoamyloliquefaciens where it forms a homohexamer.
This family also includes the MalA alpha-glucosidase
from Sulfolobus sulfataricus and the AglA
alpha-glucosidase from Picrophilus torridus. MalA is
part of the carbohydrate-metabolizing machinery that
allows this organism to utilize carbohydrates, such as
maltose, as the sole carbon and energy source.
Length = 339
Score = 29.1 bits (66), Expect = 8.3
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 11/43 (25%)
Query: 60 IDYI---RTFTWDKK----IETMVKKSGLLGGQG-KLPTIVSP 94
IDY+ R FTWDK+ + ++K+ L QG K+ TI+ P
Sbjct: 47 IDYMDGYRVFTWDKERFPDPKELIKE---LHEQGFKVVTIIDP 86
>gnl|CDD|234493 TIGR04189, surface_SprA, cell surface protein SprA. SprA is a cell
surface protein widely distributed in the Bacteroidetes
lineage. In Flavobacterium johnsoniae, a species that
shows gliding motility, mutation disrupts gliding.
Length = 2315
Score = 29.3 bits (66), Expect = 8.6
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 64 RTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRK-RFQSAMNRYFLGVPDRWSG-LTP 121
+D + + L ++P +++P+EY + +M Y+ D + TP
Sbjct: 12 TEIEYDSATDRYIVTEKLGDTDIRVPIVLTPEEYEDYVLRQSMRSYWRDKGDAAADKGTP 71
Query: 122 SSKKLSPP-PTVAPPA 136
KKL P V P
Sbjct: 72 EQKKLLDPNFYVNSPF 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,138,315
Number of extensions: 3189570
Number of successful extensions: 2733
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2723
Number of HSP's successfully gapped: 30
Length of query: 661
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 558
Effective length of database: 6,369,140
Effective search space: 3553980120
Effective search space used: 3553980120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)