RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18041
(661 letters)
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase,
signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Length = 394
Score = 81.5 bits (200), Expect = 1e-16
Identities = 19/115 (16%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Query: 542 ISYALSSFDYQYKLEELKAAHEIETNECKIPHIDIKFSDTAANFSVKMYFADLFAELRKF 601
++++++ + L ++ K+ + + ++F K Y +F LR+
Sbjct: 34 VNHSINELSHVQIPVMLMPDDFKAYSKIKVDNHLFNKENMPSHFKFKEYCPMVFRNLRER 93
Query: 602 SCPEGEESFIRSLSRCIRWEAR-GGKSGSNFCKTKDDRFILKEMSRLEMDSFLTF 655
++ F SL+R +SG+ F + D R+I+K ++ ++
Sbjct: 94 FGI-DDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNI 147
Score = 46.0 bits (108), Expect = 3e-05
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 10 ESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTNM 53
+YI ++K + ++ + D +FLA +MDYSLL+GI D
Sbjct: 231 GQKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVER 274
Score = 45.7 bits (107), Expect = 3e-05
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 49 DDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRY 108
+ +I + + KK K + G G + V+P++Y KRF +
Sbjct: 336 SPRKEVYFMAIIXILTHYDAKKKAAHAAK--TVKHGAGAEISTVNPEQYSKRFLDFIGHI 393
Query: 109 F 109
Sbjct: 394 L 394
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma;
phosphoinositide, structural genomics, structural
genomics consortium, SGC, transferase; 2.80A {Homo
sapiens}
Length = 392
Score = 78.0 bits (191), Expect = 2e-15
Identities = 19/114 (16%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 542 ISYALSSFDYQYKLEELKAAHEIETNECKIPHIDIKFSDTAANFSVKMYFADLFAELRKF 601
++++++ L +++ K+ + + ++F K Y +F LR
Sbjct: 26 VAHSINELSQVPPPVMLLPDDFKASSKIKVNNHLFHRENLPSHFKFKEYCPQVFRNLRDR 85
Query: 602 SCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEMDSFLTF 655
++ ++ SL+R E+ G S F + D ++KE+S ++ +
Sbjct: 86 FGI-DDQDYLVSLTRNPPSESEG--SDGRFLISYDRTLVIKEVSSEDIADMHSN 136
Score = 52.2 bits (124), Expect = 3e-07
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 50 DTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYF 109
+G+ID + + KK K + G G + V P++Y KRF + F
Sbjct: 334 PQKEVYFMGLIDILTQYDAKKKAAHAAK--TVKHGAGAEISTVHPEQYAKRFLDFITNIF 391
Score = 45.7 bits (107), Expect = 4e-05
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 7 MISESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTN 52
+ +YI K I ++ + D +FL +MDYSLLLGI D
Sbjct: 217 LNKNQKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDII 262
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 1e-10
Identities = 101/665 (15%), Positives = 179/665 (26%), Gaps = 294/665 (44%)
Query: 22 ILMQAINN-DTQFLANQ--HVMDYSLLLGIDDTNMELVVGMI-DYIRTFTWDKKIETMVK 77
+L + + +L H + LL +DT + +I +YI K+
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLL-QENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 78 KSGLL--------------GGQGKLPTIVSPDEY----RKRFQSAMNRYFLGVPDRWSGL 119
S L GGQG + D+Y R +Q+ Y + V D +
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQG------NTDDYFEELRDLYQT----YHVLVGDL---I 188
Query: 120 TPSSKKLSPPPTVAPPAPV--STKIDALQ----PSNHQRLPVLIYICRSPIHSPGFCVEP 173
S++ LS A + ++ L+ PS P Y+ PI P
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS---NTPDKDYLLSIPISCPL----- 240
Query: 174 CTINMDFYARNDIPLGSFLEKYCFRRDYKCPSATCLIPTLEHERWFIHGNG-SVCV-GLC 231
I + Y T + + G + GL
Sbjct: 241 ------------IGVIQLAH-YV---------VTAKLLGFTPGELRSYLKGATGHSQGL- 277
Query: 232 EIENRPPEAYDERIIMWNWCPSCKQVSSILPMSSDTW---RLSLAKFLDLRFNCVPLGCK 288
V+++ +D+W +S+ K + + F +G +
Sbjct: 278 -------------------------VTAVAIAETDSWESFFVSVRKAITVLFF---IGVR 309
Query: 289 TASCTHHLHQEQVHYFAYNNIVASFIYTRIKLYEVCIPSTTLKKSLSTFDKNGLFEEVKK 348
++ AY N +P + L+ SL +N E V
Sbjct: 310 C-------YE------AYPNT--------------SLPPSILEDSL----ENN--EGVP- 335
Query: 349 WSLMGQEVFSIVLEKLHTNQTDATMNTLQPLLVKDQANLKQKVDDIQMKLTDPDVMNNLW 408
S M SI ++ T +Q + K ++L P
Sbjct: 336 -SPM----LSI---------SNLTQEQVQDYVNKTNSHL-------------P------- 361
Query: 409 NLEDSIVKLKRAVVESINNWNSRLMKTRPKTKSTDSSKSLLTDIVEGTPTTETSTEYVFD 468
V I+ N K+L +V G P + Y +
Sbjct: 362 --AGKQV--------EISLVNGA--------------KNL---VVSGPP----QSLYGLN 390
Query: 469 S---EESEESDVDHVDDSDTVKTKVP---RMKAILSQLLPTNVPSLPISNSLVEAQQHHT 522
+ S +D ++++P R ++ LP P H+
Sbjct: 391 LTLRKAKAPSGLD--------QSRIPFSERKLKFSNRFLPVASP-------------FHS 429
Query: 523 LALGCSVPVVVYEQEPSSIISYALSSFDYQYKLEELKAAH-EIETNECKIPHIDIKFSDT 581
L + ++ ++L + + +IP + +
Sbjct: 430 HLLVPASDLI----------------------NKDLVKNNVSFNAKDIQIP---VYDTFD 464
Query: 582 AANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCI-----RWEA-------------R 623
++ LR S S + CI +WE
Sbjct: 465 GSD-------------LRVLS-----GSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 624 GGKSG 628
GG SG
Sbjct: 507 GGASG 511
Score = 45.4 bits (107), Expect = 7e-05
Identities = 82/478 (17%), Positives = 141/478 (29%), Gaps = 148/478 (30%)
Query: 278 LRFNCVPLGCKTASCTHHLHQEQVHYFAYNNIVASFIYTRIKLYEVCIPSTTLKKSLSTF 337
R PL S H L +F + + F +P T + +
Sbjct: 6 TR----PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKI--------LPEPT--EGFAAD 51
Query: 338 DKNGLFEEVKKWSLMGQEVF-SIVLEKLHTNQTDATMNTLQPLLVKDQAN-LKQKVDDIQ 395
D E L+G+ F V + ++ L L + + L+ DI
Sbjct: 52 D-----EPTTPAELVGK--FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN--DIH 102
Query: 396 MKLTDPDVMNNLWNLEDSIVKLKRAVVESINNWNSRLMKTRPKTKSTDSSKSLLTDIVE- 454
+ L D+ + + ++++ +R+M RP K ++S+ L + E
Sbjct: 103 A------LAAKLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKSNSA--LFRAVGEG 152
Query: 455 -----------GTPTT---------ETSTEYVFD----SEESEESDVDHVDDSDTVKTKV 490
G +T V D S E+ + D++ V T+
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 491 PRMKAILSQLLPTNVP------SLPISNSLVEAQQ--H-----HTL-------------A 524
+ L P+N P S+PIS L+ Q H L A
Sbjct: 213 LNILEWLEN--PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 525 LGCSVPVVVYEQEPSSIISYALS--SFDYQYKLEELKAAHEI--ETNECKIPHIDIKFS- 579
G S +V + I+ S SF + + + I E P+ + S
Sbjct: 271 TGHSQGLVT-----AVAIAETDSWESF-FVSVRKAITVLFFIGVRCYEA-YPNTSLPPSI 323
Query: 580 --DTAAN--------FSVK-MYFADLFAELRKFSC--PE----------GEESFI----- 611
D+ N S+ + + + K + P G ++ +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 612 RSLSRCIRWEARGGKSGSNFCKTKDDRFILKEMSRLEMD--------SFLTFVFPEHS 661
+SL R K + D+ SR+ FL P HS
Sbjct: 384 QSLYGLNLT-LRKAK-----APSGLDQ------SRIPFSERKLKFSNRFLPVASPFHS 429
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 2e-08
Identities = 89/577 (15%), Positives = 170/577 (29%), Gaps = 170/577 (29%)
Query: 143 DALQPSNHQRLPVLIYICRSPIHSPGFCVEPCTINMDFYAR------NDIPLGSFLEKYC 196
+ L+ N++ L SPI + +P ++ Y ND + KY
Sbjct: 85 EVLRI-NYKFL-------MSPIKTE--QRQP-SMMTRMYIEQRDRLYNDNQV---FAKYN 130
Query: 197 FRRDYKCPSATCLIPTLEHERW-FIHGNG----SVCVG-LC---EIENRPPEAYDERIIM 247
R + L + I G + +C +++ + I
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-----IF 185
Query: 248 WNWCPSCKQVSSILPMSSDTWRLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQVHYFAYN 307
W +C ++L M +L + N +++ +H Q
Sbjct: 186 WLNLKNCNSPETVLEM---LQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQA---ELR 235
Query: 308 NIVASFIYTR--IKLYEVCIPST---------TLKKSLSTFDKNGLFEEVKKWSLMGQEV 356
++ S Y + L V L L+T K + + L
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRFKQ-VTD-----FLSAATT 286
Query: 357 FSIVLEKLHTNQTDATMNTLQPLLVKDQANLKQKVDDI--QMKLTDPDVMNNLWNLEDSI 414
I L+ T LL+K L + D+ ++ T+P ++ I
Sbjct: 287 THISLDHHSMTLTPD--EVKS-LLLK---YLDCRPQDLPREVLTTNPRRLS-------II 333
Query: 415 VKLKRAVVESINNWNSRLMKTRPKTKSTDSSKSLLTDIVEGTPTTETSTEY----VFDSE 470
+ R + + +NW + + T +SS ++L E + VF
Sbjct: 334 AESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLE-------PAEYRKMFDRLSVFP-- 382
Query: 471 ESEESDVDHVDDSDTVKTKVPRMKAILSQL---LPTNVPSLPISNSLVEAQQHHTLALGC 527
+P + +LS + + + + + N L H +L
Sbjct: 383 ----------PS-----AHIPTI--LLSLIWFDVIKSDVMV-VVNKL------HKYSL-- 416
Query: 528 SVPVVVYEQEPSSIISYALSSFDYQYKLEELKAAHEI-----------ETNECKIPHID- 575
V +Q S IS + + KLE A H ++++ P++D
Sbjct: 417 -----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 576 ---------IKFSDTAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSR--CIRWEARG 624
+K + ++ F +F + R F+ R W A G
Sbjct: 472 YFYSHIGHHLKNIEHPERMTL---FRMVFLDFR----------FLEQKIRHDSTAWNASG 518
Query: 625 GKSG--SNFCKTKDDRFILKEMSRLEM--DSFLTFVF 657
K +I + E ++ L F+
Sbjct: 519 SILNTLQQLKFYKP--YICDNDPKYERLVNAILDFLP 553
Score = 51.8 bits (123), Expect = 7e-07
Identities = 60/433 (13%), Positives = 123/433 (28%), Gaps = 115/433 (26%)
Query: 294 HHLHQE----QVHYFAYNNIVASFIYTRIKLYEVCIPSTTLKKSLSTFDKNGLFEEVKKW 349
HH H + + Y Y +I++ F + ++ K LS EE+
Sbjct: 3 HHHHMDFETGEHQY-QYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-------EEIDHI 54
Query: 350 SLMGQEV------FSIVLEKLHTNQTDATMNTLQPLLVKDQANLKQKVDDIQMKLTDPDV 403
+ V F +L K + + + N K + I+ + P +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSK-QEEMVQKFVEEV------LRINYKFLMSPIKTEQRQPSM 107
Query: 404 M--------NNLWNLEDSIVKLKRAVVESINNWNSRLMKTRPKTKST-----DSSKSLLT 450
M + L+N K + ++ L++ RP S K+ +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 451 DIVEGTPTTETSTEY-VF-------DSEES------------EESDVDHVDDSDTVKTKV 490
V + + ++ +F +S E+ + + D S +K ++
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 491 PRMKAILSQLL--PTNVPSLPI-----SNSLVEAQQHHTLALGCSVPVVVYEQEPSSIIS 543
++A L +LL L + + A L C + + +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-----FNLSCKILLTTRF---KQVTD 279
Query: 544 YALSSFDYQYKLEELKAA-HEIETNECKIPHIDIKFSD------TAANFSVKMYFADLFA 596
+ ++ L+ E + ++D + D T + + A
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IA---E 335
Query: 597 ELRKFSCPEGEESFIRSLSRCIRWEARGGKSGSNFCKTKDDRFI------LKEMSRLEM- 649
+R W+ N+ D+ L + E
Sbjct: 336 SIRDGLA---------------TWD--------NWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 650 DSFLTF-VFPEHS 661
F VFP +
Sbjct: 373 KMFDRLSVFPPSA 385
Score = 49.9 bits (118), Expect = 3e-06
Identities = 91/641 (14%), Positives = 190/641 (29%), Gaps = 206/641 (32%)
Query: 21 FILMQAINNDTQFLANQHVMDYSLLLGIDDTNMELVVGM---IDYIRTFTW--DKKIETM 75
+ A ++ + V D + + ++ ++ + W K E M
Sbjct: 23 SVFEDAFVDNFDC---KDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 76 VKK--SGLLGGQGKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWSGLTPSSKKLSPPPTVA 133
V+K +L + ++SP + +R S M R ++ DR K + V+
Sbjct: 79 VQKFVEEVL--RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VS 132
Query: 134 PPAPVSTKIDALQPSNHQRLPVLIY-------------ICRS---------PIH--SPGF 169
P AL + VLI +C S I +
Sbjct: 133 RLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 170 CVEP----------CT-INMDFYARNDIP---------LGSFLEKYCFRRDYKCPSATCL 209
C P I+ ++ +R+D + + L + + Y+ CL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NCL 247
Query: 210 IPTLEH--ERWFIHGNGSVCVGLCEIENRPPEAYDERIIMWNWCPSCK--------QVSS 259
+ L + A++ SCK QV+
Sbjct: 248 L-VLLNVQNAKAW------------------NAFN---------LSCKILLTTRFKQVTD 279
Query: 260 IL--------PMSSDTWRLS-------LAKFLDLRFNCVP-LGCKT---------ASCTH 294
L + + L+ L K+LD R +P T S
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 295 HLHQ----EQVHYFAYNNIVASFI------YTRIKLYEVC--------IPSTTLKKSLST 336
L + V+ I+ S + R K+++ IP+ LS
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTIL----LSL 394
Query: 337 FDKNGLFEEVKKWSLMGQEVFSIVLEKLHTNQTDATMNTLQPLLVKDQANLKQKVDDIQM 396
W + + +V+ KLH L+ K + I +
Sbjct: 395 I-----------WFDVIKSDVMVVVNKLHK----------YSLVEKQPKESTISIPSIYL 433
Query: 397 KLTDPDVMNNLWNLEDSIVKLKRAVVESINNWNSRL--------------MKTRPKTKST 442
+L + N + L SIV + ++ ++ + +K +
Sbjct: 434 ELKVK--LENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 443 DSSKSLLTDI------VEGTPTTETSTEYVFDSEESEESDVDHVDDSDTVKTKVPRMKAI 496
+ + D + T ++ + ++ + + ++ D+D P+ + +
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND------PKYERL 544
Query: 497 LSQLLPTNVPSLPISNSLVEAQQHHTLALGCSVPV-VVYEQ 536
++ +L +P I +L+ ++ L + ++E+
Sbjct: 545 VNAIL-DFLPK--IEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 45.6 bits (107), Expect = 5e-05
Identities = 69/385 (17%), Positives = 116/385 (30%), Gaps = 133/385 (34%)
Query: 7 MISESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTNMELVVGMI-DYIRT 65
+ S K +L++ ++ Q L + + TN + +I + IR
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE----------VLTTN-PRRLSIIAESIRD 339
Query: 66 F--TWD-------KKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRYFLGV-PDR 115
TWD K+ T+++ S L ++ P EYRK F L V P
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESS--------L-NVLEPAEYRKMFDR------LSVFPPS 384
Query: 116 -----------WSGLTPSSKKLSPPPTVAPPAPVSTKIDALQPS---NHQRLPVLIYICR 161
W + S V ++ L Q I
Sbjct: 385 AHIPTILLSLIWFDVIKSD--------------VMVVVNKLHKYSLVEKQPKESTIS--- 427
Query: 162 SPIHSPGFCVEPCTINMDFYARNDIPL-GSFLEKYCFRRDYKCPSATCLIPTLEHERWFI 220
I S + + N+ L S ++ Y + + LIP + ++
Sbjct: 428 --IPS-------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDD---LIPPYLDQYFYS 475
Query: 221 HGNGSVCVG--LCEIENRPPEAYDERIIMWNWCPSCKQVSSILPMSSDTWRLSLAKFLDL 278
H +G L IE+ ER+ ++ M FLD
Sbjct: 476 H------IGHHLKNIEH------PERM-------------TLFRM----------VFLDF 500
Query: 279 RF------NCVPLGCKTASCTHHLHQEQVH--YF-----AYNNIVASFIYTRIKLYEVCI 325
RF + + S + L Q + + Y Y +V + + K+ E I
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 326 --PSTTLKKSLSTFDKNGLFEEVKK 348
T L + + +FEE K
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHK 585
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.019
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 487 KTKVPRMKAILSQLLPTNVPSLPISNSLVE 516
K + +++A L + P+L I + +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI-KATME 47
Score = 29.9 bits (66), Expect = 1.4
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 16/40 (40%)
Query: 99 KRFQSAMNRYFLGVPDRWSGLTPSSKKLSPPPTVAPPAPV 138
K+ Q+++ Y D S+ P +A A +
Sbjct: 23 KKLQASLKLY---ADD-------SA------PALAIKATM 46
Score = 29.9 bits (66), Expect = 1.6
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 11/38 (28%)
Query: 388 KQKVDDIQ--MKLTDPDVMNNLWNLEDSIVKLKRAVVE 423
KQ + +Q +KL D L +I +A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPAL-----AI----KATME 47
>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor,
gibberellin, gibberellin signaling pathway, hydrolase,
nucleus, receptor, developmental protein; HET: GA3;
1.80A {Arabidopsis thaliana} PDB: 2zsi_A*
Length = 351
Score = 33.1 bits (76), Expect = 0.28
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 130 PTVAPPAPVSTKIDALQPSNHQRLPVLIYICRSPIHSPGFCVE 172
P A + +D +P + +PV+++ H F
Sbjct: 90 PAYADQEQPPSILDLEKPVDGDIVPVILF-----FHGGSFAHS 127
>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia
eriantha} PDB: 2o7v_A
Length = 338
Score = 32.0 bits (73), Expect = 0.53
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 20/62 (32%)
Query: 126 LSPPPTVAPPAPVSTK---IDA------------LQPSNHQRLPVLIYICRSPIHSPGFC 170
+ P +PV TK ++ N +LP+++Y H GF
Sbjct: 41 TAASPDPTSSSPVLTKDLALNPLHNTFVRLFLPRHALYNSAKLPLVVY-----FHGGGFI 95
Query: 171 VE 172
+
Sbjct: 96 LF 97
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 29.9 bits (68), Expect = 3.0
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 215 HERWFIHGNGSV---CVG-LCEIENRPPEAYDERIIMWNWCPSCKQVSSILPMSSDTWRL 270
+ + GNG V C+G L E P+AYD R WN + LP+ + W+L
Sbjct: 26 GDGFIECGNGQVVTWCIGHLLEQA--QPDAYDSRYARWNL--------ADLPIVPEKWQL 75
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia
sepium} SCOP: d.124.1.1
Length = 212
Score = 29.2 bits (65), Expect = 3.5
Identities = 27/159 (16%), Positives = 43/159 (27%), Gaps = 34/159 (21%)
Query: 195 YCFRRDYKCPSATCLIPTLEHERWFIHG------NGSVCVGLCEIENRPPEAYDERII-- 246
C CP+ C +E + I G +G+ YD+ I
Sbjct: 18 ECLSVKDSCPTNACSRSEVETG-FTIKGLWPDYDDGT------WPSCCEGAKYDQNEISI 70
Query: 247 ----MWNWCPSCKQVSSILPMSSDTWRLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQVH 302
+ + PS SS S D L + K +C+ + Q
Sbjct: 71 LSNDLSKYWPSYSCPSSSACGSFDAS------DLAYEWA------KHGTCSSPVLGNQYE 118
Query: 303 YF--AYNNIVASFIYTRIKLYEVCIPSTTLKKSLSTFDK 339
YF I + +PS T + +
Sbjct: 119 YFSTTLMLYFKYNISEILSESGY-LPSNTAEYKVEGIMS 156
>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.60A {Shigella flexneri}
Length = 455
Score = 28.8 bits (64), Expect = 6.5
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 88 LPTIVSPDEYRKRFQSAMNR-YFLGVP 113
+ ++ DE R++F AM+ Y VP
Sbjct: 1 MANSITADEIREQFSQAMSAMYQQEVP 27
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 28.6 bits (64), Expect = 6.8
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 10/95 (10%)
Query: 72 IETMVKK--SGLL---GGQGKLPTIVSPDEYRKRFQSAMNRYFLGVPDRWSGLTPSSKKL 126
+ TM + L G K+ I++ + + + L ++ +
Sbjct: 27 LMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPV 86
Query: 127 S-----PPPTVAPPAPVSTKIDALQPSNHQRLPVL 156
T+ A + I+ N P++
Sbjct: 87 REIMEENVITLKENADIDEAIETFLTKNVGGAPIV 121
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 28.1 bits (62), Expect = 7.0
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 194 KYCFRRDY--KCPSATCLIPTLEHERWFIHGNGSVCVGLCEIENRPPEAYDERIIMWNWC 251
K C+ + Y K TL ++ G N +++ + C
Sbjct: 59 KSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGC 118
Query: 252 PSCKQ 256
P C Q
Sbjct: 119 PRCGQ 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,014,302
Number of extensions: 593727
Number of successful extensions: 1111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 28
Length of query: 661
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 561
Effective length of database: 3,909,693
Effective search space: 2193337773
Effective search space used: 2193337773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)