RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18041
(661 letters)
>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 74.7 bits (183), Expect = 7e-15
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 570 KIPHIDIKF--SDTAANFSVKMYFADLFAELRKFSCPEGEESFIRSLSRCIRWEARG-GK 626
KI + F + + F K Y +F LR+ + ++ + S++R + G+
Sbjct: 43 KIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGID-DQDYQNSVTRSAPINSDSQGR 101
Query: 627 SGSNFCKTKDDRFILKEMSRLEMDSFLTF 655
G+ F T D RF++K +S ++
Sbjct: 102 CGTRFLTTYDRRFVIKTVSSEDVAEMHNI 130
Score = 60.8 bits (147), Expect = 2e-10
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 49 DDTNMELVVGMIDYIRTFTWDKKIETMVKKSGLLGGQGKLPTIVSPDEYRKRFQSAMNRY 108
+ +ID + + KK K + G G + V+P++Y KRF M+
Sbjct: 324 SPKKEVYFMAIIDILTPYDTKKKAAHAAK--TVKHGAGAEISTVNPEQYSKRFNEFMSNI 381
Query: 109 F 109
Sbjct: 382 L 382
Score = 54.2 bits (130), Expect = 3e-08
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 10 ESPLYIHPHSKFILMQAINNDTQFLANQHVMDYSLLLGIDDTN 52
L++ SK ++ + D +FLA +MDYSLL+GI D +
Sbjct: 214 GQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVD 256
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine
5'-diphospho)-2C-methyl-D-erythritol kinase IspE
{Thermus thermophilus [TaxId: 274]}
Length = 120
Score = 29.3 bits (65), Expect = 0.58
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 180 FYARNDIPLGSFLEKYCFRRDYKCPSATCLIPTLEHERWFIHGNGSVCVGLCEIENRPPE 239
+ P + LE FR + + L + G+GS GL E +
Sbjct: 42 LARGEEPPYWNSLEGPAFRLFPELKEVRGRMRALGLRGVLMSGSGSAFFGLAEGPDHARR 101
Query: 240 AYDE-RIIMWNWC 251
A + R W
Sbjct: 102 AAEALRAWGRAWA 114
>d2olra2 c.109.1.1 (A:6-227) Phosphoenolpyruvate (PEP) carboxykinase
(ATP-oxaloacetate carboxy-lyase) {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 29.9 bits (67), Expect = 0.80
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 9/89 (10%)
Query: 223 NGSVCVGLCEIENRPPEAYDERIIM-------WNWCPSCKQVSSILPMSSDTWRLSLAKF 275
G+V V R P+ D+ I+ + W K + P+S +TW+
Sbjct: 47 LGAVAVDTGIFTGRSPK--DKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLV 104
Query: 276 LDLRFNCVPLGCKTASCTHHLHQEQVHYF 304
+ + V +
Sbjct: 105 TRQLSGKRLFVVDAFCGANPDTRLSVRFI 133
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 29.0 bits (64), Expect = 1.0
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 21/108 (19%)
Query: 159 ICRSPIHSPGFCVEPCTINMDFYARNDI--PLGSFLEKYCFRRDYKCPSATCLIPT---L 213
I + P+ P C EP N+ + P + E + P P +
Sbjct: 13 IKKDPV--PYICAEPLPSNI-LEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYM 69
Query: 214 EHERWFIHGNGSVCVGLCEIENRPPEAYDERIIMWNWCPSCKQVSSIL 261
N +C+ + + W P+ VS+IL
Sbjct: 70 ITPNGRFKCNTRLCLSITDFHPD------------TWNPAWS-VSTIL 104
>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 135
Score = 27.3 bits (59), Expect = 3.3
Identities = 9/100 (9%), Positives = 26/100 (26%), Gaps = 6/100 (6%)
Query: 127 SPPPTVAPPAPVSTKIDALQPSNHQRLPVL------IYICRSPIHSPGFCVEPCTINMDF 180
PP ++ + + + R+ V + R + + + D
Sbjct: 9 KNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDL 68
Query: 181 YARNDIPLGSFLEKYCFRRDYKCPSATCLIPTLEHERWFI 220
Y + P+ ++ T + + +
Sbjct: 69 YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSL 108
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 27.3 bits (59), Expect = 4.3
Identities = 10/125 (8%), Positives = 28/125 (22%), Gaps = 3/125 (2%)
Query: 245 IIMWNWCPSCKQVSSILPMSSDTWRLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQVHYF 304
++ + + + S + + + + + F
Sbjct: 48 VVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPF 107
Query: 305 AYNNIVASFIYTRIKLYEVCIPSTTLKKSLSTFDKNGLFEEVKKWSLMGQEVFSIVLEKL 364
+++ + V + D N + V + VL L
Sbjct: 108 ---PMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVL 164
Query: 365 HTNQT 369
Q+
Sbjct: 165 DALQS 169
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 26.4 bits (57), Expect = 5.5
Identities = 6/66 (9%), Positives = 14/66 (21%)
Query: 249 NWCPSCKQVSSILPMSSDTWRLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQVHYFAYNN 308
CP C++ + L + + + + S +
Sbjct: 36 KTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQ 95
Query: 309 IVASFI 314
I
Sbjct: 96 INVRCD 101
>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein
(SteCRISP) {Chinese green tree viper (Trimeresurus
stejnegeri) [TaxId: 39682]}
Length = 164
Score = 26.8 bits (58), Expect = 7.1
Identities = 15/125 (12%), Positives = 28/125 (22%), Gaps = 13/125 (10%)
Query: 192 LEKYCFRRDYKCPSATCLIPTLEHERWFIHGNGSVCVGLCEIENRPPEAYDERIIMWNWC 251
R Y+C + + E N + + + +DE
Sbjct: 45 AADNAERWAYRCIESHSSYESRVIEGIKCGENIYMSPYPMKWTDIIHAWHDEYKDFKYGV 104
Query: 252 PSCKQVSSILPMSSDTWRLSLAKFLDLRFNCVPLGCKTASCTHHLHQEQV--HYFAYNNI 309
+ + + W S +GC A C + Y N
Sbjct: 105 GADPPNAVTGHYTQIVWYKSYR-----------IGCAAAYCPSSPYSYFFVCQYCPAGNF 153
Query: 310 VASFI 314
+
Sbjct: 154 IGKTA 158
>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 311
Score = 27.0 bits (58), Expect = 7.5
Identities = 17/149 (11%), Positives = 34/149 (22%), Gaps = 20/149 (13%)
Query: 127 SPPPTVAPPAPVSTKIDALQPSNHQRLPVLIYICRSP------IHSPGFCVEPCTINMDF 180
++ V D + + V +Y + H GF + +
Sbjct: 42 ERNRQLSQHERVERVEDRTIKGRNGDIRVRVYQQKPDSPVLVYYHGGGFVICSIESHDAL 101
Query: 181 YARNDIPLGSFLEKYCFRRDYKCPSATCLIPTLEHERWFIHGNGSVCVGLCEIENRPPEA 240
R S DY+ + EN
Sbjct: 102 CRRIARLSNST----VVSVDYRLAPEHKFPAAVYDCYDATK---------WVAENAEELR 148
Query: 241 YD-ERIIMWNWCPSCKQVSSILPMSSDTW 268
D +I + +++ M+ D+
Sbjct: 149 IDPSKIFVGGDSAGGNLAAAVSIMARDSG 177
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,492,832
Number of extensions: 119509
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 13
Length of query: 661
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 570
Effective length of database: 1,158,166
Effective search space: 660154620
Effective search space used: 660154620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)