BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18046
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 49/63 (77%), Gaps = 2/63 (3%)
Query: 81 LGERGGGSANKP--RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEAR 138
L E G + ++P RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA R+DL+EAR
Sbjct: 196 LDEHGSNAGDRPTKRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEAR 255
Query: 139 VQF 141
VQ
Sbjct: 256 VQV 258
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/48 (79%), Positives = 42/48 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA RLDL+EARVQ
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 373
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 42/49 (85%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA RLDL+EARVQ
Sbjct: 213 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQV 261
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 82.4 bits (202), Expect = 7e-16, Method: Composition-based stats.
Identities = 38/48 (79%), Positives = 42/48 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA RLDL+EARVQ
Sbjct: 330 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 377
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 82.4 bits (202), Expect = 8e-16, Method: Composition-based stats.
Identities = 38/48 (79%), Positives = 42/48 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA RLDL+EARVQ
Sbjct: 328 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 375
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 44/49 (89%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA++++L E RVQ
Sbjct: 135 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQV 183
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 43/49 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQ
Sbjct: 526 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 574
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 43/49 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQ
Sbjct: 135 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQV 183
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 43/48 (89%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQ
Sbjct: 134 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 43/48 (89%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQ
Sbjct: 120 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 167
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
Query: 87 GSANKPRKI-RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
G +P+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQ
Sbjct: 133 GDEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 188
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 43/49 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQ
Sbjct: 134 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQV 182
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
PE=2 SV=1
Length = 268
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 42/48 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA ++ L E RVQ
Sbjct: 85 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKISLPEVRVQ 132
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 43/49 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQ
Sbjct: 128 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 176
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 12/74 (16%)
Query: 80 DLGE--RGGGSANKP----------RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTRED 127
DLGE + G S P +K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+
Sbjct: 9 DLGELRKPGDSEGTPPAAAEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREE 68
Query: 128 LASRLDLSEARVQF 141
LA +++L E RVQ
Sbjct: 69 LAMKVNLPEVRVQV 82
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 43/49 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQ
Sbjct: 135 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 183
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 43/49 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQ
Sbjct: 128 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 176
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 43/49 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQ
Sbjct: 133 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 181
>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni GN=SMOX-3
PE=2 SV=1
Length = 288
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
RK RR RTTFT+ QL +LERAF +T YPD++TREDLA R+DL+EARVQ
Sbjct: 2 RKQRRIRTTFTSLQLKELERAFQETHYPDIYTREDLALRIDLTEARVQV 50
>sp|A2T711|RAX2_PANTR Retina and anterior neural fold homeobox protein 2 OS=Pan
troglodytes GN=RAX2 PE=3 SV=1
Length = 184
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 42/48 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+K RR+RTTFTTYQLHQLERAF+ + YPDV++RE+LA+++ L E RVQ
Sbjct: 25 KKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|Q96IS3|RAX2_HUMAN Retina and anterior neural fold homeobox protein 2 OS=Homo sapiens
GN=RAX2 PE=1 SV=1
Length = 184
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 42/48 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+K RR+RTTFTTYQLHQLERAF+ + YPDV++RE+LA+++ L E RVQ
Sbjct: 25 KKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|A1YG25|RAX2_PANPA Retina and anterior neural fold homeobox protein 2 OS=Pan paniscus
GN=RAX2 PE=3 SV=1
Length = 184
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 42/48 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+K RR+RTTFTTYQLHQLERAF+ + YPDV++RE+LA+++ L E RVQ
Sbjct: 25 KKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|A1YEV8|RAX2_GORGO Retina and anterior neural fold homeobox protein 2 OS=Gorilla
gorilla gorilla GN=RAX2 PE=3 SV=1
Length = 184
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 42/48 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+K RR+RTTFTTYQLHQLERAF+ + YPDV++RE+LA+++ L E RVQ
Sbjct: 25 KKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 21/113 (18%)
Query: 28 DSNKLDPISHNLNHLDNTDPNDLEISNDLEINDDSASNASSYDYGNHGNKMADLGERGGG 87
D+ L P + H D + + +S DL D G K++D
Sbjct: 60 DTEHLSPKKDSNKHFDGVCRSTVMVSPDLPDAD--------------GGKLSD------- 98
Query: 88 SANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
N +K RR+RTTFTT+QLH+LERAF+K+ YPDV++RE+LA +++L E RVQ
Sbjct: 99 DENPKKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQ 151
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 41/49 (83%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
RK RR RTTF+ QL +LERAF++TQYPD++TRE+LA R +L+EAR+Q
Sbjct: 211 RKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQV 259
>sp|Q7YRX0|RAX2_BOVIN Retina and anterior neural fold homeobox protein 2 OS=Bos taurus
GN=RAX2 PE=2 SV=1
Length = 184
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 42/48 (87%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+K RR+RTTFTTYQLHQLERAF+ + YPDV++RE+LA+++ L E RVQ
Sbjct: 25 KKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 72 GNHGNKMADLGERGGGSANKP--RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLA 129
G+ GN++ D G + P RK RRSRTTFT QL +LE+AF++T YPD++TRE+LA
Sbjct: 193 GDKGNRL-DEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELA 251
Query: 130 SRLDLSEARVQ 140
R L+EARVQ
Sbjct: 252 QRTKLTEARVQ 262
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 41/49 (83%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
RK RR RTTFT++QL +LE+AF +T YPDVFTRE+LA ++ L+EAR+Q
Sbjct: 83 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV 131
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 40/49 (81%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
RK RRSRTTFT QL +LE+AF++T YPD++TRE+LA R L+EARVQ
Sbjct: 213 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQV 261
>sp|Q94398|HM08_CAEEL Homeobox protein ceh-8 OS=Caenorhabditis elegans GN=ceh-8 PE=4 SV=3
Length = 276
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+K RR+RTTFTT+QLH LE AFDKT YPDV+ RE LA+++ L E RVQ
Sbjct: 58 KKQRRNRTTFTTFQLHALEAAFDKTHYPDVYARETLAAKVQLPEVRVQ 105
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 38/48 (79%)
Query: 94 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
K RR+RTTFT+YQL +LE+ F KT YPDV+ RE LA R DL+EARVQ
Sbjct: 201 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 248
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 38/48 (79%)
Query: 94 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
K RR+RTTFT+YQL +LE+ F KT YPDV+ RE LA R DL+EARVQ
Sbjct: 199 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 246
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 83 ERGGGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
E+ +NK +K RR+RTTFT+YQL +LE+ F KT YPDV+ RE LA R DL+EARVQ
Sbjct: 203 EKADSESNKGKK-RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 260
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 43/54 (79%)
Query: 87 GSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
G N+ RK RR RTTFT+ QL +LER F +T YPD++TRE+LA ++DL+EARVQ
Sbjct: 90 GGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 143
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 43/54 (79%)
Query: 87 GSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
G N+ RK RR RTTFT+ QL +LER F +T YPD++TRE+LA ++DL+EARVQ
Sbjct: 90 GGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 143
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RK RRSRTTFT QL +LERAF++T YPD++TRE+LA R L+EARVQ
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|P09083|GSBN_DROME Protein gooseberry-neuro OS=Drosophila melanogaster GN=gsb-n PE=1
SV=2
Length = 449
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 38/49 (77%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
RK RRSRTTFT QL LERAF +TQYPDV+TRE+LA L+EAR+Q
Sbjct: 180 RKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQV 228
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RK RRSRTTFT QL +LERAF++T YPD++TRE+LA R L+EARVQ
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RK RRSRTTFT QL +LERAF++T YPD++TRE+LA R L+EARVQ
Sbjct: 218 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 265
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RK RRSRTTFT QL +LERAF++T YPD++TRE+LA R L+EARVQ
Sbjct: 194 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 241
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RK RRSRTTFT QL +LERAF++T YPD++TRE+LA R L+EARVQ
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 94 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
K RR+RTTF+T+QL +LE+ F KT YPDV+ RE LA R DL+EARVQ
Sbjct: 152 KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 94 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
K RR+RTTF+T+QL +LE+ F KT YPDV+ RE LA R DL+EARVQ
Sbjct: 152 KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 40/48 (83%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RK RR RTTFT+ QL +LER F +T YPD++TRE+LA ++DL+EARVQ
Sbjct: 88 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 40/48 (83%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RK RR RTTFT+ QL +LER F +T YPD++TRE+LA ++DL+EARVQ
Sbjct: 88 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 40/48 (83%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RK RR RTTFT+ QL +LER F +T YPD++TRE+LA ++DL+EARVQ
Sbjct: 88 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 20 LHSDSHHADSNKLDPISHNLNHLDNTDPNDLEISNDLEINDDSASNASSYDYGNHGNKMA 79
+H HH + P N + + +L + D+ + + + G MA
Sbjct: 65 IHRAEHHVRMERASPCQENNANYGLAKVEGQTVHTELGRSMDTCCSLAV----SPGKSMA 120
Query: 80 D------LGERGGGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLD 133
D LG++ + + +K RR RTTFT+ QL +LE+ F KT YPDV+ RE LA R +
Sbjct: 121 DKVELDELGDKCDSNVSSSKK-RRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTE 179
Query: 134 LSEARVQ 140
L+EARVQ
Sbjct: 180 LTEARVQ 186
>sp|P97830|UNC4_RAT Homeobox protein unc-4 homolog OS=Rattus norvegicus GN=Uncx PE=2
SV=1
Length = 530
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 77 KMADLGERGGGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSE 136
K+AD G+ S R RR+RT FT +QL +LE+AF+++ YPDVF RE LA RLDL E
Sbjct: 93 KLADSGDPDKESPGCKR--RRTRTNFTGWQLEELEKAFNESHYPDVFMREALAVRLDLVE 150
Query: 137 ARVQ 140
+RVQ
Sbjct: 151 SRVQ 154
>sp|O08934|UNC4_MOUSE Homeobox protein unc-4 homolog OS=Mus musculus GN=Uncx PE=2 SV=2
Length = 530
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 77 KMADLGERGGGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSE 136
K+AD G+ S R RR+RT FT +QL +LE+AF+++ YPDVF RE LA RLDL E
Sbjct: 93 KLADSGDPDKESPGCKR--RRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVE 150
Query: 137 ARVQ 140
+RVQ
Sbjct: 151 SRVQ 154
>sp|Q8SQ03|CRX_CANFA Cone-rod homeobox protein OS=Canis familiaris GN=CRX PE=2 SV=1
Length = 299
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 90 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+ PRK RR RTTFT QL +LE F KTQYPDV+ RE++A +++L E+RVQ
Sbjct: 34 SAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQ 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,449,222
Number of Sequences: 539616
Number of extensions: 2326874
Number of successful extensions: 7649
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 6221
Number of HSP's gapped (non-prelim): 1506
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)