Query psy18046
Match_columns 141
No_of_seqs 178 out of 1246
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 21:05:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh5_A ZF-HD homeobox family p 99.5 4E-14 1.4E-18 92.6 5.6 50 92-141 14-67 (80)
2 1wh7_A ZF-HD homeobox family p 99.5 4.6E-14 1.6E-18 92.4 5.3 50 91-141 13-67 (80)
3 2dmt_A Homeobox protein BARH-l 99.5 6E-14 2E-18 91.5 5.5 51 91-141 13-63 (80)
4 2kt0_A Nanog, homeobox protein 99.4 3E-13 1E-17 88.7 6.4 52 90-141 17-68 (84)
5 2da3_A Alpha-fetoprotein enhan 99.4 1.4E-13 4.8E-18 89.4 4.1 51 91-141 13-63 (80)
6 1nk2_P Homeobox protein VND; h 99.4 2.9E-13 1E-17 87.6 4.7 51 91-141 5-55 (77)
7 2cra_A Homeobox protein HOX-B1 99.4 2.7E-13 9.4E-18 86.2 4.3 50 92-141 4-53 (70)
8 2djn_A Homeobox protein DLX-5; 99.4 3.3E-13 1.1E-17 85.8 4.4 50 92-141 4-53 (70)
9 2da2_A Alpha-fetoprotein enhan 99.4 4.3E-13 1.5E-17 85.1 4.4 50 92-141 4-53 (70)
10 2dmu_A Homeobox protein goosec 99.4 3.9E-13 1.3E-17 85.4 4.1 49 93-141 5-53 (70)
11 2dms_A Homeobox protein OTX2; 99.3 6.2E-13 2.1E-17 86.6 4.4 50 92-141 4-53 (80)
12 1wi3_A DNA-binding protein SAT 99.3 5.7E-13 2E-17 84.3 4.0 50 92-141 4-54 (71)
13 2da1_A Alpha-fetoprotein enhan 99.3 4.1E-13 1.4E-17 85.2 3.2 50 92-141 4-53 (70)
14 2cue_A Paired box protein PAX6 99.3 7.2E-13 2.5E-17 86.3 4.5 49 93-141 5-53 (80)
15 1puf_A HOX-1.7, homeobox prote 99.3 9.8E-13 3.4E-17 85.1 4.8 50 92-141 10-59 (77)
16 2vi6_A Homeobox protein nanog; 99.3 3.8E-13 1.3E-17 83.5 2.6 48 94-141 2-49 (62)
17 2h1k_A IPF-1, pancreatic and d 99.3 4.5E-13 1.5E-17 83.5 3.0 48 94-141 2-49 (63)
18 2dmq_A LIM/homeobox protein LH 99.3 1E-12 3.5E-17 85.4 4.4 49 93-141 5-53 (80)
19 2hdd_A Protein (engrailed home 99.3 5.9E-13 2E-17 82.4 2.7 47 95-141 3-49 (61)
20 1fjl_A Paired protein; DNA-bin 99.3 8.2E-13 2.8E-17 86.2 3.4 51 91-141 14-64 (81)
21 2e1o_A Homeobox protein PRH; D 99.3 1.5E-12 5.1E-17 82.7 4.3 49 93-141 5-53 (70)
22 1akh_A Protein (mating-type pr 99.3 5.8E-13 2E-17 82.3 2.3 50 92-141 2-51 (61)
23 3a01_A Homeodomain-containing 99.3 1.8E-12 6.3E-17 86.8 4.9 51 91-141 13-63 (93)
24 1bw5_A ISL-1HD, insulin gene e 99.3 1E-12 3.5E-17 82.5 3.4 48 94-141 2-49 (66)
25 2l7z_A Homeobox protein HOX-A1 99.3 1.7E-12 5.8E-17 83.2 4.5 49 93-141 5-53 (73)
26 2m0c_A Homeobox protein arista 99.3 1.6E-12 5.4E-17 83.4 4.3 50 92-141 6-55 (75)
27 1ig7_A Homeotic protein MSX-1; 99.3 1.1E-12 3.9E-17 80.2 3.4 46 96-141 1-46 (58)
28 1zq3_P PRD-4, homeotic bicoid 99.3 1.4E-12 4.6E-17 82.5 3.4 47 95-141 2-48 (68)
29 2da4_A Hypothetical protein DK 99.3 8.5E-13 2.9E-17 85.9 2.2 50 92-141 5-58 (80)
30 3rkq_A Homeobox protein NKX-2. 99.3 2E-12 6.9E-17 78.8 3.5 47 95-141 2-48 (58)
31 2r5y_A Homeotic protein sex co 99.3 3.1E-12 1E-16 84.7 4.6 50 92-141 25-74 (88)
32 1jgg_A Segmentation protein EV 99.3 1.9E-12 6.4E-17 79.8 3.0 46 96-141 2-47 (60)
33 1ahd_P Antennapedia protein mu 99.3 1.3E-12 4.5E-17 82.6 2.4 47 95-141 2-48 (68)
34 1b8i_A Ultrabithorax, protein 99.3 1.7E-12 5.6E-17 84.9 2.9 49 93-141 18-66 (81)
35 1ftt_A TTF-1 HD, thyroid trans 99.3 2.1E-12 7.3E-17 81.6 3.2 47 95-141 2-48 (68)
36 1yz8_P Pituitary homeobox 2; D 99.3 1E-12 3.5E-17 83.0 1.4 48 94-141 2-49 (68)
37 3nar_A ZHX1, zinc fingers and 99.2 4E-12 1.4E-16 85.5 3.1 50 92-141 22-71 (96)
38 2k40_A Homeobox expressed in E 99.2 5.5E-12 1.9E-16 79.4 3.4 47 95-141 1-47 (67)
39 1b72_A Protein (homeobox prote 99.2 4.4E-12 1.5E-16 85.4 3.0 49 93-141 32-80 (97)
40 2ecc_A Homeobox and leucine zi 99.2 6.8E-12 2.3E-16 81.2 3.3 44 98-141 6-49 (76)
41 2dn0_A Zinc fingers and homeob 99.2 1.1E-11 3.9E-16 79.8 3.7 47 95-141 8-54 (76)
42 1x2n_A Homeobox protein pknox1 99.2 1.7E-11 5.8E-16 78.3 4.2 50 92-141 4-56 (73)
43 2ly9_A Zinc fingers and homeob 99.2 1.2E-11 4.2E-16 79.1 3.4 47 95-141 6-52 (74)
44 2hi3_A Homeodomain-only protei 99.1 1.8E-11 6.3E-16 78.2 3.3 46 96-141 3-49 (73)
45 1uhs_A HOP, homeodomain only p 99.1 2E-11 6.8E-16 77.8 3.4 46 96-141 2-48 (72)
46 3a02_A Homeobox protein arista 99.1 1.3E-11 4.6E-16 75.9 2.4 44 98-141 2-45 (60)
47 2cuf_A FLJ21616 protein; homeo 99.1 1.9E-11 6.6E-16 82.0 3.4 50 92-141 4-68 (95)
48 1lfb_A Liver transcription fac 99.1 1.6E-11 5.5E-16 83.3 2.7 50 92-141 6-76 (99)
49 2da6_A Hepatocyte nuclear fact 99.1 3.1E-11 1.1E-15 82.2 4.1 50 92-141 3-73 (102)
50 1au7_A Protein PIT-1, GHF-1; c 99.1 2.1E-11 7E-16 87.9 3.4 50 92-141 84-133 (146)
51 2da5_A Zinc fingers and homeob 99.1 4.1E-11 1.4E-15 77.1 4.1 44 98-141 10-53 (75)
52 1e3o_C Octamer-binding transcr 99.1 2.3E-11 7.8E-16 88.8 2.9 49 93-141 99-147 (160)
53 1du6_A PBX1, homeobox protein 99.1 3.3E-11 1.1E-15 75.0 2.9 47 95-141 3-52 (64)
54 3d1n_I POU domain, class 6, tr 99.1 5.1E-11 1.7E-15 86.2 4.0 50 92-141 90-139 (151)
55 3a03_A T-cell leukemia homeobo 99.1 3.2E-11 1.1E-15 73.3 2.4 42 100-141 2-43 (56)
56 2xsd_C POU domain, class 3, tr 99.1 2.9E-11 1E-15 88.7 2.4 50 92-141 96-145 (164)
57 2dmn_A Homeobox protein TGIF2L 99.1 8.1E-11 2.8E-15 77.1 4.3 49 93-141 5-56 (83)
58 1puf_B PRE-B-cell leukemia tra 99.1 6.9E-11 2.4E-15 75.4 3.5 47 95-141 1-50 (73)
59 2d5v_A Hepatocyte nuclear fact 99.0 6.8E-11 2.3E-15 86.4 2.9 50 92-141 94-143 (164)
60 2ecb_A Zinc fingers and homeob 99.0 1E-10 3.6E-15 77.8 3.4 41 101-141 17-57 (89)
61 1mnm_C Protein (MAT alpha-2 tr 99.0 1.1E-10 3.9E-15 76.9 3.6 49 93-141 25-76 (87)
62 1b72_B Protein (PBX1); homeodo 99.0 1.2E-10 4.2E-15 76.6 3.2 47 95-141 1-50 (87)
63 3l1p_A POU domain, class 5, tr 99.0 2E-10 6.8E-15 83.5 3.9 49 93-141 94-142 (155)
64 1k61_A Mating-type protein alp 99.0 2.7E-10 9.3E-15 69.9 3.0 43 99-141 2-47 (60)
65 2cqx_A LAG1 longevity assuranc 98.9 1.4E-10 4.7E-15 74.2 0.6 46 96-141 9-55 (72)
66 2dmp_A Zinc fingers and homeob 98.9 1E-09 3.6E-14 72.7 4.8 40 102-141 20-59 (89)
67 1le8_B Mating-type protein alp 98.9 5.5E-10 1.9E-14 73.1 3.0 45 97-141 4-51 (83)
68 3nau_A Zinc fingers and homeob 98.9 5.1E-10 1.7E-14 70.4 2.1 39 103-141 12-50 (66)
69 1ic8_A Hepatocyte nuclear fact 98.9 2.1E-10 7.1E-15 86.3 -0.0 51 91-141 111-182 (194)
70 2h8r_A Hepatocyte nuclear fact 98.9 7.2E-10 2.5E-14 84.7 2.6 45 89-133 136-180 (221)
71 2e19_A Transcription factor 8; 98.9 1.2E-09 4E-14 68.3 2.9 43 99-141 7-49 (64)
72 2l9r_A Homeobox protein NKX-3. 98.8 1.5E-09 5.2E-14 68.9 2.8 43 99-141 8-50 (69)
73 1x2m_A LAG1 longevity assuranc 98.7 4E-09 1.4E-13 66.0 1.9 38 104-141 9-47 (64)
74 3k2a_A Homeobox protein MEIS2; 98.5 5.1E-08 1.8E-12 61.2 2.5 41 101-141 4-47 (67)
75 1mh3_A Maltose binding-A1 home 98.3 1.7E-07 5.8E-12 75.6 2.1 47 95-141 365-411 (421)
76 2da7_A Zinc finger homeobox pr 98.1 1.3E-06 4.3E-11 55.4 1.9 38 104-141 14-51 (71)
77 2lk2_A Homeobox protein TGIF1; 97.9 5.8E-06 2E-10 54.7 2.3 43 99-141 9-54 (89)
78 2rgt_A Fusion of LIM/homeobox 89.2 0.0073 2.5E-07 43.4 -5.4 31 93-123 134-164 (169)
79 3i5g_B Myosin regulatory light 52.5 29 0.00098 23.4 5.2 40 98-137 6-50 (153)
80 2elh_A CG11849-PA, LD40883P; s 49.4 14 0.00046 22.9 2.8 40 95-139 16-55 (87)
81 1hlv_A CENP-B, major centromer 33.5 29 0.00098 22.6 2.6 39 98-139 4-42 (131)
82 2glo_A Brinker CG9653-PA; prot 33.0 19 0.00064 20.4 1.4 40 99-139 3-42 (59)
83 1ytv_M V1AR, vasopressin V1A r 29.1 54 0.0018 20.8 3.1 31 1-31 15-46 (84)
84 1p4w_A RCSB; solution structur 25.5 45 0.0016 21.2 2.4 36 99-140 32-67 (99)
85 2cqr_A RSGI RUH-043, DNAJ homo 25.2 1.2E+02 0.0041 18.3 4.7 36 95-132 14-51 (73)
86 1iuf_A Centromere ABP1 protein 23.9 1E+02 0.0034 20.7 4.1 41 96-139 6-53 (144)
87 1tc3_C Protein (TC3 transposas 23.9 55 0.0019 16.6 2.3 34 101-139 5-38 (51)
88 1fi6_A EH domain protein REPS1 22.7 39 0.0013 20.5 1.7 36 102-137 3-43 (92)
89 2lv7_A Calcium-binding protein 22.3 1.1E+02 0.0037 19.0 3.8 38 99-136 27-69 (100)
90 2cp8_A NEXT to BRCA1 gene 1 pr 21.6 18 0.00063 21.1 -0.1 9 1-9 19-27 (54)
91 3hug_A RNA polymerase sigma fa 21.3 42 0.0014 20.5 1.6 17 124-140 55-71 (92)
92 2ys9_A Homeobox and leucine zi 20.9 45 0.0016 20.4 1.6 33 108-140 19-51 (70)
93 2bwb_A Ubiquitin-like protein 20.5 25 0.00085 19.5 0.3 9 1-9 17-25 (46)
94 3u0k_A Rcamp; fluorescent prot 20.1 1.2E+02 0.004 25.1 4.3 40 97-136 291-335 (440)
No 1
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.48 E-value=4e-14 Score=92.61 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=47.3
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhc----CCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDK----TQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~----~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+++||.||.||.+|+.+||..|+. ++||+..+|++||..|+|++.||||
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~Vkv 67 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKV 67 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccC
Confidence 4567889999999999999999999 9999999999999999999999986
No 2
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.47 E-value=4.6e-14 Score=92.38 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=46.6
Q ss_pred CCCCCCCCCCccCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 91 KPRKIRRSRTTFTTYQLHQLERAFDK-----TQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 91 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~-----~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
...++||.||.||.+|+.+|| .|.. ++||+..+|++||..|+|++.||||
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkv 67 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKI 67 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccc
Confidence 345678899999999999999 8999 9999999999999999999999986
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6e-14 Score=91.49 Aligned_cols=51 Identities=47% Similarity=0.601 Sum_probs=48.0
Q ss_pred CCCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 91 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 91 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
..++.||.||.||..|+..||..|..++||+..+|.+||..|+|++.||+|
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 63 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKT 63 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeee
Confidence 456778899999999999999999999999999999999999999999986
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.42 E-value=3e-13 Score=88.70 Aligned_cols=52 Identities=29% Similarity=0.461 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 90 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 90 ~~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
...+++||.||.||..|+..||..|..++||+..+|.+||..|+|++.||+|
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 68 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKT 68 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3456788899999999999999999999999999999999999999999986
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-13 Score=89.42 Aligned_cols=51 Identities=27% Similarity=0.324 Sum_probs=47.8
Q ss_pred CCCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 91 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 91 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+.++||.||.||.+|+..||..|..++||+..+|.+||..|+|++.||+|
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~ 63 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQV 63 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHH
Confidence 356678899999999999999999999999999999999999999999985
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.39 E-value=2.9e-13 Score=87.58 Aligned_cols=51 Identities=37% Similarity=0.524 Sum_probs=47.8
Q ss_pred CCCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 91 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 91 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++++||.||.||..|+..||..|..++||+..+|.+||..|+|++.||+|
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 55 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKI 55 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 456678899999999999999999999999999999999999999999986
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=2.7e-13 Score=86.15 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=46.9
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++.||.||.||..|+..||..|..++||+..+|.+||..|+|++.||+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITI 53 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhH
Confidence 35578899999999999999999999999999999999999999999985
No 8
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=3.3e-13 Score=85.75 Aligned_cols=50 Identities=36% Similarity=0.602 Sum_probs=46.9
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
..+.||.||.||.+|+..||..|..++||+..++.+||..|+|++.||+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 53 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 34578899999999999999999999999999999999999999999985
No 9
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.37 E-value=4.3e-13 Score=85.12 Aligned_cols=50 Identities=36% Similarity=0.457 Sum_probs=47.1
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++.|+.||.||.+|+..||..|..++||+..++.+||..|+|++.||+|
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVV 53 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHH
Confidence 45678899999999999999999999999999999999999999999985
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.9e-13 Score=85.38 Aligned_cols=49 Identities=49% Similarity=0.688 Sum_probs=46.4
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+.||.||.||.+|+..||..|..++||+..++.+||..|+|++.||+|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEV 53 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeeh
Confidence 4577899999999999999999999999999999999999999999985
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=6.2e-13 Score=86.57 Aligned_cols=50 Identities=52% Similarity=0.773 Sum_probs=47.1
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++.||.||.||.+|+..||..|..++||+..+|.+||..|+|++.+|+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQV 53 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhh
Confidence 35678899999999999999999999999999999999999999999985
No 12
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=5.7e-13 Score=84.26 Aligned_cols=50 Identities=26% Similarity=0.273 Sum_probs=47.3
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDK-TQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~-~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+++||.||.|+.+|+..|+..|+. ++||+...|..||+.|||++.+|||
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqV 54 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIK 54 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 4568899999999999999999999 9999999999999999999999986
No 13
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.34 E-value=4.1e-13 Score=85.20 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=47.0
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++.||.||.||.+|+..||..|+.++||+..++.+||..|+|++.||+|
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKH 53 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 45678899999999999999999999999999999999999999999985
No 14
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=7.2e-13 Score=86.31 Aligned_cols=49 Identities=51% Similarity=0.870 Sum_probs=46.5
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+.||.||.||..|+..||..|..++||+..+|.+||..|+|++.||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 53 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 53 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 4578899999999999999999999999999999999999999999986
No 15
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.34 E-value=9.8e-13 Score=85.07 Aligned_cols=50 Identities=30% Similarity=0.400 Sum_probs=47.2
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++.||.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 59 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKI 59 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 45678899999999999999999999999999999999999999999986
No 16
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.34 E-value=3.8e-13 Score=83.53 Aligned_cols=48 Identities=31% Similarity=0.436 Sum_probs=41.1
Q ss_pred CCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 94 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 94 k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
++||.||.||..|+..||..|..++||+..+|.+||..+||++.+|+|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 49 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKT 49 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 467899999999999999999999999999999999999999999985
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.34 E-value=4.5e-13 Score=83.48 Aligned_cols=48 Identities=33% Similarity=0.470 Sum_probs=43.8
Q ss_pred CCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 94 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 94 k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+.||.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 49 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKI 49 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 367899999999999999999999999999999999999999999985
No 18
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=85.43 Aligned_cols=49 Identities=27% Similarity=0.371 Sum_probs=46.5
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+++||.||.||.+|+..||..|..++||+..++.+||..|+|++.||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQV 53 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 4578899999999999999999999999999999999999999999985
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.32 E-value=5.9e-13 Score=82.39 Aligned_cols=47 Identities=36% Similarity=0.619 Sum_probs=42.1
Q ss_pred CCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+||.||.||..|+..||..|..++||+..++.+||..+||++.||+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI 49 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 57899999999999999999999999999999999999999999985
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.31 E-value=8.2e-13 Score=86.18 Aligned_cols=51 Identities=63% Similarity=0.973 Sum_probs=46.3
Q ss_pred CCCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 91 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 91 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
..+++||.||.||..|+..||..|..++||+..+|.+||..|||++.||+|
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 64 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQV 64 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 356778899999999999999999999999999999999999999999985
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=1.5e-12 Score=82.69 Aligned_cols=49 Identities=29% Similarity=0.383 Sum_probs=45.7
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+.++.|+.||..|+..||..|..++||+..++.+||..|+|++.||+|
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKT 53 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhH
Confidence 3466789999999999999999999999999999999999999999985
No 22
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.31 E-value=5.8e-13 Score=82.30 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=39.1
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++.++.||.||..|+..||..|..++||+..++.+||..+||++.||+|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~ 51 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRV 51 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 35678899999999999999999999999999999999999999999985
No 23
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.31 E-value=1.8e-12 Score=86.80 Aligned_cols=51 Identities=35% Similarity=0.572 Sum_probs=47.7
Q ss_pred CCCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 91 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 91 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+.++||.||.||..|+..||..|..++||+..+|.+||..|||++.||||
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 63 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKT 63 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhccc
Confidence 345678899999999999999999999999999999999999999999986
No 24
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.31 E-value=1e-12 Score=82.53 Aligned_cols=48 Identities=29% Similarity=0.446 Sum_probs=45.7
Q ss_pred CCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 94 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 94 k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
++||.||.||.+|+..||..|..++||+..++.+||..+||++.||+|
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRV 49 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 467899999999999999999999999999999999999999999985
No 25
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.31 E-value=1.7e-12 Score=83.16 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=46.4
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+.||.||.||..|+..||..|..++||+..+|.+||..+||++.||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 53 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 53 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHH
Confidence 4568899999999999999999999999999999999999999999985
No 26
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=83.35 Aligned_cols=50 Identities=64% Similarity=0.974 Sum_probs=46.9
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++++|.||.||..|+..||..|..++||+..++.+||..|+|++.+|+|
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 55 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 55 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 45578899999999999999999999999999999999999999999985
No 27
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.30 E-value=1.1e-12 Score=80.18 Aligned_cols=46 Identities=43% Similarity=0.676 Sum_probs=44.2
Q ss_pred CCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 96 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 96 rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
||.||.||..|+..||..|..++||+..++.+||..+||++.||+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 46 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKI 46 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhh
Confidence 5789999999999999999999999999999999999999999985
No 28
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.29 E-value=1.4e-12 Score=82.51 Aligned_cols=47 Identities=38% Similarity=0.550 Sum_probs=45.2
Q ss_pred CCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+||.||.||..|+..||..|..++||+..+|.+||..|||++.+|+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 48 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKI 48 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 57899999999999999999999999999999999999999999985
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=8.5e-13 Score=85.91 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=47.1
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcC----CCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKT----QYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~----~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+++||.||.||.+|+..||..|..+ +||+..+|.+||..|+|++.||+|
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~v 58 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRT 58 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhH
Confidence 45678899999999999999999999 999999999999999999999986
No 30
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.28 E-value=2e-12 Score=78.77 Aligned_cols=47 Identities=34% Similarity=0.544 Sum_probs=44.8
Q ss_pred CCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+||.||.||..|+..||..|..++||+..++.+||..|+|++.||+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 48 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKI 48 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHH
Confidence 46789999999999999999999999999999999999999999985
No 31
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.28 E-value=3.1e-12 Score=84.72 Aligned_cols=50 Identities=30% Similarity=0.515 Sum_probs=43.1
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++.||.||.||..|+..||..|..++||+..+|.+||..|+|++.||+|
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 74 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 74 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhH
Confidence 34578899999999999999999999999999999999999999999986
No 32
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.27 E-value=1.9e-12 Score=79.82 Aligned_cols=46 Identities=41% Similarity=0.585 Sum_probs=43.7
Q ss_pred CCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 96 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 96 rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
||.||.||..|+..||..|..++||+..++.+||..+||++.||+|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 47 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKV 47 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 6789999999999999999999999999999999999999999985
No 33
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.27 E-value=1.3e-12 Score=82.59 Aligned_cols=47 Identities=32% Similarity=0.530 Sum_probs=45.0
Q ss_pred CCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+||.||.||..|+..||..|..++||+..+|.+||..++|++.||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 48 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 48 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhH
Confidence 47889999999999999999999999999999999999999999985
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.27 E-value=1.7e-12 Score=84.86 Aligned_cols=49 Identities=33% Similarity=0.523 Sum_probs=42.1
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+++||.||.||..|+..||..|..++||+..+|.+||..|||++.+|+|
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 66 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKI 66 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 4567899999999999999999999999999999999999999999986
No 35
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.27 E-value=2.1e-12 Score=81.59 Aligned_cols=47 Identities=34% Similarity=0.530 Sum_probs=45.1
Q ss_pred CCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+||.||.||..|+..||..|..++||+..++.+||..|||++.+|+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 48 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKI 48 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHH
Confidence 57889999999999999999999999999999999999999999985
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.26 E-value=1e-12 Score=83.04 Aligned_cols=48 Identities=50% Similarity=0.777 Sum_probs=45.8
Q ss_pred CCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 94 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 94 k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
++||.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRV 49 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 467899999999999999999999999999999999999999999985
No 37
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.22 E-value=4e-12 Score=85.52 Aligned_cols=50 Identities=26% Similarity=0.251 Sum_probs=43.7
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
....+|.||.||..|+..||..|..++||+..+|++||..|+|++.||||
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 71 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVS 71 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeee
Confidence 34466789999999999999999999999999999999999999999985
No 38
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.22 E-value=5.5e-12 Score=79.36 Aligned_cols=47 Identities=43% Similarity=0.599 Sum_probs=44.7
Q ss_pred CCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.||.||.||..|+..||..|..++||+..++.+||..+||++.||+|
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 47 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQI 47 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 36789999999999999999999999999999999999999999985
No 39
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.22 E-value=4.4e-12 Score=85.44 Aligned_cols=49 Identities=35% Similarity=0.490 Sum_probs=43.1
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+.++.||.||..|+..||..|..++||+..+|.+||..|+|++.||||
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 80 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 80 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHH
Confidence 4577889999999999999999999999999999999999999999986
No 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.20 E-value=6.8e-12 Score=81.23 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=41.8
Q ss_pred CCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 98 SRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 98 ~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.|+.||.+|+.+||+.|..++||+..+|++||..+||++.||||
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkv 49 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQ 49 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 56679999999999999999999999999999999999999986
No 41
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=79.84 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=44.0
Q ss_pred CCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+.+.||.||.+|+..||..|..++||+..+|.+||..++|++.||+|
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~ 54 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRK 54 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhH
Confidence 34569999999999999999999999999999999999999999985
No 42
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.18 E-value=1.7e-11 Score=78.30 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=46.1
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~---~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++.++.|+.|+..|+..||..|.. ++||+..++.+||..++|++.||+|
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 56 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNN 56 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 3557788999999999999999976 9999999999999999999999985
No 43
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-11 Score=79.09 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=44.8
Q ss_pred CCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++.||.||.+|+..||..|..++||+..+|.+||..++|++.||||
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 52 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKK 52 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeee
Confidence 46789999999999999999999999999999999999999999985
No 44
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=1.8e-11 Score=78.24 Aligned_cols=46 Identities=28% Similarity=0.252 Sum_probs=43.4
Q ss_pred CCCCCccCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 96 RRSRTTFTTYQLHQLERAFDK-TQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 96 rr~Rt~ft~~Ql~~Le~~F~~-~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
++.||.||..|+..||..|+. ++||+..+|.+||..+||++.||+|
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~ 49 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 49 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 467999999999999999995 9999999999999999999999985
No 45
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=2e-11 Score=77.84 Aligned_cols=46 Identities=30% Similarity=0.307 Sum_probs=43.4
Q ss_pred CCCCCccCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 96 RRSRTTFTTYQLHQLERAFDK-TQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 96 rr~Rt~ft~~Ql~~Le~~F~~-~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+.||.||..|+..||..|+. ++||+..+|.+||..|+|++.||+|
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~ 48 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 457999999999999999996 9999999999999999999999985
No 46
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.14 E-value=1.3e-11 Score=75.94 Aligned_cols=44 Identities=59% Similarity=1.006 Sum_probs=40.0
Q ss_pred CCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 98 SRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 98 ~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.||.||..|+..||..|..++||+..+|.+||..+||++.||+|
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 45 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV 45 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 58999999999999999999999999999999999999999985
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.14 E-value=1.9e-11 Score=81.95 Aligned_cols=50 Identities=30% Similarity=0.396 Sum_probs=47.0
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcC---------------CCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLD---------------LSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~---------------L~e~qVKV 141 (141)
.+++||.|+.||..|+..||..|+.++||+..+|++||..++ |++.+|+|
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~ 68 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 68 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHH
Confidence 456788999999999999999999999999999999999999 99999975
No 48
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.14 E-value=1.6e-11 Score=83.26 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=41.6
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHH------------------cC---CCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASR------------------LD---LSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~------------------l~---L~e~qVKV 141 (141)
.+++||.||.||..|+..||..|+.++||+..+|++||.. || |++.+|+|
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~v 76 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYN 76 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeee
Confidence 4678899999999999999999999999999999999999 88 99999875
No 49
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.1e-11 Score=82.17 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=46.3
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHc---------------------CCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRL---------------------DLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l---------------------~L~e~qVKV 141 (141)
.+++||.||.|+..|+..||+.|+.++||+..+|++||..+ .|++.+|+|
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~ 73 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYN 73 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceee
Confidence 45678899999999999999999999999999999999999 788988875
No 50
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.13 E-value=2.1e-11 Score=87.93 Aligned_cols=50 Identities=26% Similarity=0.350 Sum_probs=44.0
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+++||.||.||..|+..||..|..++||+..+|.+||..++|++.||+|
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 133 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRV 133 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchh
Confidence 45678899999999999999999999999999999999999999999986
No 51
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.1e-11 Score=77.09 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=41.6
Q ss_pred CCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 98 SRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 98 ~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.|+.||.+|+..||..|..++||+..+|.+||..|+|++.||+|
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDS 53 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 46679999999999999999999999999999999999999985
No 52
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.11 E-value=2.3e-11 Score=88.85 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=43.1
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++||.||.||..|+..||+.|..++||+..+|.+||..++|++.||||
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 147 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRV 147 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhH
Confidence 4678899999999999999999999999999999999999999999986
No 53
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.10 E-value=3.3e-11 Score=75.04 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=44.7
Q ss_pred CCCCCCccCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAF---DKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F---~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++.|+.|+..|+..||..| ..++||+..++.+||..+||++.||+|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 52 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 52 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 57789999999999999999 999999999999999999999999975
No 54
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.09 E-value=5.1e-11 Score=86.16 Aligned_cols=50 Identities=28% Similarity=0.454 Sum_probs=47.2
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+++||.||.||..|+..||+.|..++||+..+|.+||..++|++.||+|
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 139 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRV 139 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHH
Confidence 45678899999999999999999999999999999999999999999986
No 55
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.09 E-value=3.2e-11 Score=73.34 Aligned_cols=42 Identities=33% Similarity=0.501 Sum_probs=39.1
Q ss_pred CccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 100 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 100 t~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
|.||..|+..||..|..++||+..+|.+||..+||++.||||
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 43 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKT 43 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 689999999999999999999999999999999999999985
No 56
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.08 E-value=2.9e-11 Score=88.74 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=39.3
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+++||.||.||..|+..||+.|..++||+..+|.+||..++|++.||||
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 145 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRV 145 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhh
Confidence 46678899999999999999999999999999999999999999999986
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.08 E-value=8.1e-11 Score=77.14 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=45.1
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~---~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++|+.|+.|+..|+..||..|.. ++||+..+|.+||..++|++.||+|
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~ 56 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISN 56 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 456788999999999999999887 6999999999999999999999985
No 58
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.07 E-value=6.9e-11 Score=75.42 Aligned_cols=47 Identities=26% Similarity=0.399 Sum_probs=44.5
Q ss_pred CCCCCCccCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAF---DKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F---~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+||.|+.||..|+..||..| ..++||+..++.+||..+||++.||+|
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~ 50 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 36789999999999999999 999999999999999999999999985
No 59
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.04 E-value=6.8e-11 Score=86.40 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=43.1
Q ss_pred CCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 92 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
..++||.||.||..|+..||..|+.++||+..+|.+||..|+|++.||+|
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~ 143 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSN 143 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhh
Confidence 45678899999999999999999999999999999999999999999985
No 60
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.04 E-value=1e-10 Score=77.80 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=39.9
Q ss_pred ccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 101 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 101 ~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.||.+|+.+||+.|+.++||+..+|.+||..|+|+++||||
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkv 57 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDA 57 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCee
Confidence 78999999999999999999999999999999999999986
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.04 E-value=1.1e-10 Score=76.92 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=45.3
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~---~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++++.|+.|+.+|+..||..|.. ++||+..+|.+||..+||++.||+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~ 76 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 76 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 345667999999999999999999 9999999999999999999999985
No 62
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.02 E-value=1.2e-10 Score=76.59 Aligned_cols=47 Identities=26% Similarity=0.399 Sum_probs=43.4
Q ss_pred CCCCCCccCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAF---DKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F---~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.||.|+.|+..|+..||..| ..++||+..+|.+||..+||++.||+|
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~ 50 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 36789999999999999999 999999999999999999999999985
No 63
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.00 E-value=2e-10 Score=83.46 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=46.4
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+++||.||.||..|+..||+.|..++||+..+|.+||..++|++.||||
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~v 142 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRV 142 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheee
Confidence 4567889999999999999999999999999999999999999999986
No 64
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.97 E-value=2.7e-10 Score=69.93 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=41.4
Q ss_pred CCccCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 99 RTTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 99 Rt~ft~~Ql~~Le~~F~~---~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
|+.||.+|+..||..|.. ++||+..++.+||..+||++.||+|
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~ 47 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 47 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 789999999999999999 9999999999999999999999975
No 65
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.93 E-value=1.4e-10 Score=74.19 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=42.0
Q ss_pred CCCCCccCHHHHHHHHHhh-hcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 96 RRSRTTFTTYQLHQLERAF-DKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 96 rr~Rt~ft~~Ql~~Le~~F-~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+.|+.++..|+.+||+.| ..++||+..+|.+||..|+|++.||||
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqv 55 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 55 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcch
Confidence 3456667889999999999 999999999999999999999999986
No 66
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1e-09 Score=72.72 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=39.1
Q ss_pred cCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 102 FTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 102 ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
||.+|+.+||..|..++||+..+|.+||..++|++.||||
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~v 59 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDS 59 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccH
Confidence 8999999999999999999999999999999999999986
No 67
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.91 E-value=5.5e-10 Score=73.06 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=41.4
Q ss_pred CCCCccCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 97 RSRTTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 97 r~Rt~ft~~Ql~~Le~~F~~---~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+.|+.||..|+..||..|.. ++||+..+|.+||..+||++.||+|
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~ 51 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 51 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHccc
Confidence 44666999999999999999 9999999999999999999999985
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.88 E-value=5.1e-10 Score=70.38 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=37.8
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 103 TTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 103 t~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
|..|+.+||+.|..++||+..+|.+||..+||++.||||
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkv 50 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKK 50 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhH
Confidence 789999999999999999999999999999999999985
No 69
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.87 E-value=2.1e-10 Score=86.35 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=43.6
Q ss_pred CCCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcC---------------------CCCCcccC
Q psy18046 91 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLD---------------------LSEARVQF 141 (141)
Q Consensus 91 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~---------------------L~e~qVKV 141 (141)
..+++||.||.|+..|+..||+.|+.++||+..+|++||..++ |++.+|+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~ 182 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYN 182 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccch
Confidence 4567889999999999999999999999999999999999999 99999875
No 70
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.86 E-value=7.2e-10 Score=84.71 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcC
Q psy18046 89 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLD 133 (141)
Q Consensus 89 ~~~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~ 133 (141)
.+..++.||.|+.|+..|+..||+.|+.++||+..+|++||..++
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 345677899999999999999999999999999999999999987
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=1.2e-09 Score=68.32 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=39.7
Q ss_pred CCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 99 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 99 Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
+..++..|+..||+.|..++||+..+|.+||..|+|++.||||
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqv 49 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKK 49 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCc
Confidence 3445799999999999999999999999999999999999986
No 72
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.83 E-value=1.5e-09 Score=68.86 Aligned_cols=43 Identities=30% Similarity=0.496 Sum_probs=40.3
Q ss_pred CCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 99 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 99 Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
--.+|..|+.+||+.|..++||+..+|.+||..++|+++||||
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqv 50 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 50 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheee
Confidence 3467999999999999999999999999999999999999986
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.71 E-value=4e-09 Score=65.98 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=35.2
Q ss_pred HHHHHHHHHhh-hcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 104 TYQLHQLERAF-DKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 104 ~~Ql~~Le~~F-~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
..|+.+||+.| ..++||+..+|.+||..|+|+++||||
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkv 47 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQR 47 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHH
Confidence 35799999999 679999999999999999999999986
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.49 E-value=5.1e-08 Score=61.18 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=37.8
Q ss_pred ccCHHHHHHHHHhhh---cCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 101 TFTTYQLHQLERAFD---KTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 101 ~ft~~Ql~~Le~~F~---~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.|+.+|+..|+..|. .++||+..+|.+||..++|++.||+|
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~ 47 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNN 47 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhh
Confidence 689999999999999 99999999999999999999999975
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.31 E-value=1.7e-07 Score=75.59 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=44.1
Q ss_pred CCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 95 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.++.|+.|+..|+.+||+.|+.++||+..+|++||..++|+++||||
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~ 411 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRV 411 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhH
Confidence 34668899999999999999999999999999999999999999986
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.3e-06 Score=55.36 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 104 TYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 104 ~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
.+|+..||+.|..+++|+..++..||..+||++.+|||
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrV 51 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKE 51 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 57899999999999999999999999999999999986
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=97.86 E-value=5.8e-06 Score=54.70 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=39.6
Q ss_pred CCccCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCCCcccC
Q psy18046 99 RTTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQF 141 (141)
Q Consensus 99 Rt~ft~~Ql~~Le~~F~~---~~y~~~~~r~~LA~~l~L~e~qVKV 141 (141)
-..|+.+++..|+..|.. ++||+..+|.+||..+||++.||++
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~ 54 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCN 54 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 456899999999999987 9999999999999999999999974
No 78
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=89.17 E-value=0.0073 Score=43.38 Aligned_cols=31 Identities=3% Similarity=-0.114 Sum_probs=22.2
Q ss_pred CCCCCCCCccCHHHHHHHHHhhhcCCCCCHH
Q psy18046 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVF 123 (141)
Q Consensus 93 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~ 123 (141)
.+.||.||.|+..|++.|++.|+.++|+...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 4567899999999999999999999998653
No 79
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=52.52 E-value=29 Score=23.35 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCCccCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHcCCCCC
Q psy18046 98 SRTTFTTYQLHQLERAFDK-----TQYPDVFTREDLASRLDLSEA 137 (141)
Q Consensus 98 ~Rt~ft~~Ql~~Le~~F~~-----~~y~~~~~r~~LA~~l~L~e~ 137 (141)
.|..+|.+|+.+|...|.. .-+++..+-..+.+.||+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3556899999999999964 557888888888888877654
No 80
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=49.45 E-value=14 Score=22.91 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=25.3
Q ss_pred CCCCCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcc
Q psy18046 95 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 139 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qV 139 (141)
+++.+..|+.++....-..+... + ...++|..+|++...|
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl 55 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTL 55 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHH
Confidence 34456778988866555555432 1 2457899999876543
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=33.53 E-value=29 Score=22.58 Aligned_cols=39 Identities=10% Similarity=0.261 Sum_probs=26.9
Q ss_pred CCCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcc
Q psy18046 98 SRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 139 (141)
Q Consensus 98 ~Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qV 139 (141)
.|..||.++..++-..+....... ..++|..+|++...|
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl 42 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTL 42 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHH
Confidence 577899999888777664444433 336788889876543
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=33.05 E-value=19 Score=20.43 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=24.3
Q ss_pred CCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcc
Q psy18046 99 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 139 (141)
Q Consensus 99 Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qV 139 (141)
|..|+.++.......+... +.......++|..+|++..+|
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl 42 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQI 42 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHH
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHH
Confidence 4468888877774444333 221112558899999976544
No 83
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose- binding protein, sugar binding protein, hormone receptor; HET: MAL; 1.80A {Homo sapiens}
Probab=29.12 E-value=54 Score=20.83 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCCCCc-CCCCCcccceeEeeCCCCCCCCCCC
Q psy18046 1 MGFNDQ-LGNLSGRFNLVLHLHSDSHHADSNK 31 (141)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~sd~~~~~s~~ 31 (141)
|||... ++.+=.+|-+|-.+......+++..
T Consensus 15 MgFnshLl~~~lr~fpCC~~~k~~~~kEdSdS 46 (84)
T 1ytv_M 15 LGIEENLYFQGQGSFPCCQNMKEKFNKEDTDS 46 (84)
T ss_pred cccccccchhhhhccccccCccccCCccCCCc
Confidence 899988 7776688888888777766666554
No 84
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.54 E-value=45 Score=21.22 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=26.0
Q ss_pred CCccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCccc
Q psy18046 99 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140 (141)
Q Consensus 99 Rt~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVK 140 (141)
...+|..|...|...++-. .-.++|..|++++..|+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~ 67 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTIS 67 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 4457888888887755322 33689999999987765
No 85
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.16 E-value=1.2e+02 Score=18.34 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCCCCCccCHHHHHHHHHhhhcCCCC-CHHHH-HHHHHHc
Q psy18046 95 IRRSRTTFTTYQLHQLERAFDKTQYP-DVFTR-EDLASRL 132 (141)
Q Consensus 95 ~rr~Rt~ft~~Ql~~Le~~F~~~~y~-~~~~r-~~LA~~l 132 (141)
.+-.+..+|.++-..|+..... |. ....| ..||..+
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~--~g~~~~~rW~~IA~~v 51 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQ--YPRGSSDCWDKIARCV 51 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHH--SCSSSHHHHHHHGGGC
T ss_pred cccCCCCCCHHHHHHHHHHHHH--cCCCCCchHHHHHHHc
Confidence 3445778999999999887664 33 22333 4577766
No 86
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=23.94 E-value=1e+02 Score=20.70 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=27.1
Q ss_pred CCCCCccCHHHHHHHHHhh-hcCCCCCHHHHHHHHH----Hc--CCCCCcc
Q psy18046 96 RRSRTTFTTYQLHQLERAF-DKTQYPDVFTREDLAS----RL--DLSEARV 139 (141)
Q Consensus 96 rr~Rt~ft~~Ql~~Le~~F-~~~~y~~~~~r~~LA~----~l--~L~e~qV 139 (141)
++.|..+|-+|..++-..+ ..+.-.+ ..+||. .+ +++...|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~sti 53 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSV 53 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSST
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHH
Confidence 4678899999999998887 4444343 335566 66 5555443
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.92 E-value=55 Score=16.56 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=21.0
Q ss_pred ccCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCCCcc
Q psy18046 101 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 139 (141)
Q Consensus 101 ~ft~~Ql~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qV 139 (141)
.++..+...+...+... + ...++|..++++...|
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv 38 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCI 38 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHH
Confidence 35666665555544433 2 3557899999987654
No 88
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.75 E-value=39 Score=20.55 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=24.6
Q ss_pred cCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHcCCCCC
Q psy18046 102 FTTYQLHQLERAFDK-----TQYPDVFTREDLASRLDLSEA 137 (141)
Q Consensus 102 ft~~Ql~~Le~~F~~-----~~y~~~~~r~~LA~~l~L~e~ 137 (141)
++.+|..+++..|.. .-|++..+-..+...+++++.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~ 43 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPIL 43 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHH
Confidence 577888888888864 346677666666666676643
No 89
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=22.33 E-value=1.1e+02 Score=19.01 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=29.8
Q ss_pred CCccCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHcCCCC
Q psy18046 99 RTTFTTYQLHQLERAFDK-----TQYPDVFTREDLASRLDLSE 136 (141)
Q Consensus 99 Rt~ft~~Ql~~Le~~F~~-----~~y~~~~~r~~LA~~l~L~e 136 (141)
...++.+|+.+|...|.. +-|++..+-..+...+|...
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~ 69 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMP 69 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCC
Confidence 456789999999999864 56899988888888877543
No 90
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.58 E-value=18 Score=21.09 Aligned_cols=9 Identities=56% Similarity=0.745 Sum_probs=5.3
Q ss_pred CCCCCcCCC
Q psy18046 1 MGFNDQLGN 9 (141)
Q Consensus 1 ~~~~~~~~~ 9 (141)
|||.|.=-|
T Consensus 19 MGF~D~~~N 27 (54)
T 2cp8_A 19 MGFCDRQLN 27 (54)
T ss_dssp HTCCCHHHH
T ss_pred cCCCcHHHH
Confidence 677765433
No 91
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=21.31 E-value=42 Score=20.55 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=13.3
Q ss_pred HHHHHHHHcCCCCCccc
Q psy18046 124 TREDLASRLDLSEARVQ 140 (141)
Q Consensus 124 ~r~~LA~~l~L~e~qVK 140 (141)
.-.++|..||+++..|+
T Consensus 55 s~~eIA~~lgis~~tV~ 71 (92)
T 3hug_A 55 STAQIATDLGIAEGTVK 71 (92)
T ss_dssp CHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHCcCHHHHH
Confidence 45688999999887765
No 92
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.92 E-value=45 Score=20.45 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHcCCCCCccc
Q psy18046 108 HQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140 (141)
Q Consensus 108 ~~Le~~F~~~~y~~~~~r~~LA~~l~L~e~qVK 140 (141)
+.|+..|...+.+.-..-..|+.+..|+..|||
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvk 51 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVL 51 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHH
Confidence 458888888888888888889998888887775
No 93
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=20.48 E-value=25 Score=19.47 Aligned_cols=9 Identities=56% Similarity=0.582 Sum_probs=5.5
Q ss_pred CCCCCcCCC
Q psy18046 1 MGFNDQLGN 9 (141)
Q Consensus 1 ~~~~~~~~~ 9 (141)
|||.|...|
T Consensus 17 MGF~d~~~~ 25 (46)
T 2bwb_A 17 MGFFDFDRN 25 (46)
T ss_dssp TTCCCHHHH
T ss_pred cCCCcHHHH
Confidence 777765443
No 94
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=20.09 E-value=1.2e+02 Score=25.06 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=32.1
Q ss_pred CCCCccCHHHHHHHHHhhh-----cCCCCCHHHHHHHHHHcCCCC
Q psy18046 97 RSRTTFTTYQLHQLERAFD-----KTQYPDVFTREDLASRLDLSE 136 (141)
Q Consensus 97 r~Rt~ft~~Ql~~Le~~F~-----~~~y~~~~~r~~LA~~l~L~e 136 (141)
..+..|+.+|+.+|+..|. .+-+++..+-..+...|++..
T Consensus 291 Ps~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~ 335 (440)
T 3u0k_A 291 PTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP 335 (440)
T ss_dssp CBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC
T ss_pred hhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCC
Confidence 3588899999999999995 466788888777777777654
Done!