RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy18046
         (141 letters)



>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain. 
          Length = 57

 Score = 74.4 bits (184), Expect = 6e-19
 Identities = 23/45 (51%), Positives = 32/45 (71%)

Query: 96  RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
           RR RTTFT  QL +LE+ F+K +YP    RE+LA +L L+E +V+
Sbjct: 1   RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVK 45


>gnl|CDD|197696 smart00389, HOX, Homeodomain.  DNA-binding factors that are
           involved in the transcriptional regulation of key
           developmental processes.
          Length = 57

 Score = 65.0 bits (159), Expect = 4e-15
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 96  RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
           RR RT+FT  QL +LE+ F K  YP    RE+LA +L LSE +V+
Sbjct: 2   RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVK 46


>gnl|CDD|238039 cd00086, homeodomain, Homeodomain;  DNA binding domains involved in
           the transcriptional regulation of key eukaryotic
           developmental processes; may bind to DNA as monomers or
           as homo- and/or heterodimers, in a sequence-specific
           manner.
          Length = 59

 Score = 64.6 bits (158), Expect = 4e-15
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query: 96  RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
           RR RT FT  QL +LE+ F+K  YP    RE+LA  L L+E +V+
Sbjct: 1   RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVK 45


>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
           [Transcription].
          Length = 156

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 16/54 (29%), Positives = 22/54 (40%)

Query: 87  GSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
              +     +  R   T  QL  LER F+   YP   TR  L+  L++    VQ
Sbjct: 43  RKQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQ 96


>gnl|CDD|219071 pfam06525, SoxE, Sulfocyanin (SoxE).  This family consists of
           several archaeal sulfocyanin (or blue copper protein)
           sequences from a number of Sulfolobus species.
          Length = 195

 Score = 29.0 bits (65), Expect = 0.60
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 33  DPISHNLNHLDNTD--PNDLEISNDLEINDDSASNASSYD 70
           + + HNLN + N    PN  +IS+D +I     +  S+Y 
Sbjct: 103 ESLPHNLNLVQNNTPTPNSPDISSDGKILLYVGATPSNYT 142


>gnl|CDD|114900 pfam06208, BDV_G, Borna disease virus G protein.  This family
           consists of Borna disease virus G glycoprotein
           sequences. Borna disease virus (BDV) infection produces
           a variety of clinical diseases, from behavioural
           illnesses to classical fatal encephalitis. G protein is
           important for viral entry into the host cell.
          Length = 503

 Score = 26.2 bits (57), Expect = 6.8
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 87  GSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDV 122
           GS  KP++IR ++T+   Y L + E + + T   D+
Sbjct: 377 GSGVKPKRIRYNKTSH-DYHLEEFEASLNMTPQLDI 411


>gnl|CDD|222167 pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain.
          This family is part of the beta-lactamase superfamily
          and is related to pfam00753.
          Length = 158

 Score = 25.6 bits (57), Expect = 7.9
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 16 LVLHLHSDSHHADSNKLDPISHNLNHLDNTDPNDLEISN 54
          L+ H H D  H   + L    H LN   +     LEI  
Sbjct: 39 LISHAHDD--HGHPDPLPGNPHVLNGGGSYTVGGLEIRG 75


>gnl|CDD|225891 COG3355, COG3355, Predicted transcriptional regulator
           [Transcription].
          Length = 126

 Score = 25.3 bits (56), Expect = 7.9
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 123 FTREDLASRLDLSEARVQ 140
            T ++LA  L+ S + V 
Sbjct: 43  LTVDELAEILNRSRSTVY 60


>gnl|CDD|225779 COG3239, DesA, Fatty acid desaturase [Lipid metabolism].
          Length = 343

 Score = 25.9 bits (57), Expect = 8.0
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 10/39 (25%)

Query: 3   FNDQLGNLSGRFNL-------VLHLHSDSHHADSNKLDP 34
            ND +G+L+    L       + H     HHA +N LD 
Sbjct: 96  INDLIGHLAAALLLAPPVFWRISHNQ---HHAHTNILDD 131


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.313    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,966,256
Number of extensions: 593324
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 20
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.5 bits)