RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18046
(141 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 67.5 bits (165), Expect = 1e-16
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 96 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+R+RT+FT Q+ LE+ F++T YPDVF RE LA+++DL EAR+Q
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 46
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 66.8 bits (163), Expect = 2e-16
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 91 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
R R+ R +T +Q +LE+ F Y R ++A L+L+E +V+
Sbjct: 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 64.9 bits (158), Expect = 8e-16
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 96 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+ + F+ Q +LE+ F+ +Y R+ LA L LSE +V+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 63.7 bits (155), Expect = 3e-15
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 96 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
R+ R ++ QL +LER + ++ R +++ LSE ++
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 46
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 63.7 bits (155), Expect = 3e-15
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 94 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
K R RT QLH L + PD +E L LS ++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 62.9 bits (153), Expect = 5e-15
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 99 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
R T+T YQ +LE+ F +Y R ++A L L+E +++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 42
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 62.2 bits (151), Expect = 9e-15
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 97 RSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
R RT F++ QL +L+R F++ +Y R+ L+S L L+EA+++
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 60.7 bits (147), Expect = 4e-14
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 96 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RR RT FT+ QL QLE F + +YPD+ TRE++A +L+EARV+
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 46
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 60.7 bits (147), Expect = 4e-14
Identities = 31/47 (65%), Positives = 41/47 (87%)
Query: 94 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
K RRSRTTF+ QL +LERAF++TQYPD++TRE+LA R +L+EAR+Q
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 47
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 60.3 bits (146), Expect = 4e-14
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 96 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
R+ RT FTT QL LER F + QY + R + +S L L+E +V+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 60.8 bits (147), Expect = 6e-14
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 96 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQF 141
R SR T+ L +E F++ QYPD RE++A+ + +
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGK 46
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 60.8 bits (147), Expect = 6e-14
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 84 RGGGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
S RT FTT QL +LE+ F +Y R ++A+ L+L+E +V+
Sbjct: 16 TAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 72
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 60.1 bits (145), Expect = 8e-14
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 87 GSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
S P K R+ R FT Q ++LER F + +Y RE LAS + L+ +V+
Sbjct: 1 ASDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 59.5 bits (144), Expect = 9e-14
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 97 RSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
R RT FT QL +LE+ F K Y R +LA++L+L E+ ++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 44
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 59.5 bits (144), Expect = 9e-14
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 97 RSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+ RTT + LER F + P +A L+L + V+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 44
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 59.1 bits (143), Expect = 1e-13
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 99 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
R FT Q L F + + P + ++ +L L + V
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 43
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 57.6 bits (139), Expect = 6e-13
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 96 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RR+RTTFT+ Q+ +LE+ F + +Y DL+++L L A+V+
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 57.2 bits (138), Expect = 8e-13
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 96 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
R+ R F+ Q+++LER F + +Y RE LAS + L+ +V+
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 55.8 bits (134), Expect = 4e-12
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 93 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+ +R RT+ LE F K P + +A++L L + V+
Sbjct: 6 QARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 55.8 bits (134), Expect = 4e-12
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 96 RRSRTTFTTYQLHQLERAFDKT-QYPDVFTREDLASRLDLSEARVQ 140
T T Q+ LE F+K ++PD T +A+ L+E + Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 54.1 bits (130), Expect = 1e-11
Identities = 7/42 (16%), Positives = 22/42 (52%)
Query: 99 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
+++ + LE+ F + Q + +E++A + ++ +V+
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 42
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 50.3 bits (120), Expect = 5e-10
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 96 RRSRTTFTTYQLHQLERAFD---KTQYPDVFTREDLASRLDLSEARVQ 140
RR R F L F YP +E+LA + ++ ++V
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 49.7 bits (119), Expect = 8e-10
Identities = 6/48 (12%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 96 RRSRTTFTTYQLHQLERAFDKTQ---YPDVFTREDLASRLDLSEARVQ 140
+ R + + + + YP ++ +A++ +L+ +V
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 49.8 bits (118), Expect = 9e-10
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 99 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
R + L +A+++ + P RE L + +E +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQR 42
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 49.2 bits (117), Expect = 1e-09
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 99 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
RT+ T LE++F + Q P +A +L++ + ++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 43
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 48.5 bits (115), Expect = 3e-09
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 82 GERGGGSANKPRKIRRSRTTFTTYQLHQLERAFDK----TQYPDVFTREDLASRLDLSEA 137
G G ++ +R RT FT Q ++ ++ Q D E + +
Sbjct: 4 GSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQ 63
Query: 138 RVQ 140
++
Sbjct: 64 VLK 66
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 47.4 bits (112), Expect = 7e-09
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 87 GSANKPRKIRRSRTTFTTYQLHQLERAFDKT-QYPDVFTREDLASRLDLSEARVQ 140
GS+ RSRT + L L+ YPD L+++LDL + +
Sbjct: 1 GSSGSSG--PRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 46.3 bits (110), Expect = 1e-08
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 97 RSRTTFTTYQLHQLERAFDK-TQYPDVFTREDLASRLDLSEARVQ 140
+ LE+ F T+YPD + L+ +LD S ++Q
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 47
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 45.9 bits (109), Expect = 2e-08
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 96 RRSRTTFTTYQLHQLERAFDKTQ---YPDVFTREDLASRLDLSEARVQ 140
R R FT + LE F K Y D E+L LS +++
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 45.5 bits (108), Expect = 2e-08
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 103 TTYQLHQLERAFDK-TQYPDVFTREDLASRLDLSEARVQ 140
T LE+ F T++PD E L+ +LD +Q
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 39
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 42.0 bits (98), Expect = 7e-07
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 92 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
P + T QL L+ +F + L ++ L+ +
Sbjct: 1 PDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 49
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 36.6 bits (84), Expect = 9e-05
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 96 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 140
S T QL L+ F + Q+ + L L +
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48
>d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human
(Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 23.7 bits (50), Expect = 7.5
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 61 DSASNASSYDYGNHGNKMADLGERGGGSA 89
DS +S+ N + L G A
Sbjct: 14 DSQITSSNQGDRNWMPENIRLVTSRSGWA 42
>d2fi2a1 a.28.3.2 (A:37-128) Zinc finger protein 42 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 92
Score = 23.2 bits (50), Expect = 9.7
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 107 LHQLERAFDKTQYPDVFTREDLASRLDLSE 136
L QL + P+V ++E + L L +
Sbjct: 26 LAQLRELCRQWLRPEVRSKEQMLELLVLEQ 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.378
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 488,468
Number of extensions: 19699
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 36
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.4 bits)