BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy18049
         (204 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
           Clip- 170RESTIN
          Length = 141

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 56/77 (72%)

Query: 23  SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
           S + SS+   E  D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG 
Sbjct: 50  SSTPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS 109

Query: 83  VGQARYFQCEPKHGIFS 99
           V   RYFQCEP  GIF+
Sbjct: 110 VAGVRYFQCEPLKGIFT 126



 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 3/51 (5%)

Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           D R+G+RV V    G+K G ++F G TQFA G+W G+ LDEPIGKNDG++ 
Sbjct: 64  DFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 111


>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1
          Length = 86

 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 50/64 (78%)

Query: 36 DSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKH 95
          D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V   RYFQCEP  
Sbjct: 1  DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 60

Query: 96 GIFS 99
          GIF+
Sbjct: 61 GIFT 64



 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 3/51 (5%)

Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           D R+G+RV V    G+K G ++F G TQFA G+W G+ LDEPIGKNDG++ 
Sbjct: 2   DFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 49


>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex
 pdb|3RDV|B Chain B, Structure Of The Slain2c-Clipcg1 Complex
 pdb|3RDV|C Chain C, Structure Of The Slain2c-Clipcg1 Complex
 pdb|3RDV|D Chain D, Structure Of The Slain2c-Clipcg1 Complex
          Length = 72

 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 50/64 (78%)

Query: 36 DSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKH 95
          D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V   RYFQCEP  
Sbjct: 1  DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 60

Query: 96 GIFS 99
          GIF+
Sbjct: 61 GIFT 64



 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 3/51 (5%)

Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           D R+G+RV V    G+K G ++F G TQFA G+W G+ LDEPIGKNDG++ 
Sbjct: 2   DFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 49


>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
           Clip- 170RESTIN
          Length = 172

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 57/79 (72%), Gaps = 2/79 (2%)

Query: 23  SISDSSQV--LTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKND 80
           SIS+ S+   + +      IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKND
Sbjct: 22  SISNLSEAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKND 81

Query: 81  GQVGQARYFQCEPKHGIFS 99
           G V   RYFQC+PK+G+F+
Sbjct: 82  GAVAGTRYFQCQPKYGLFA 100



 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 41/50 (82%), Gaps = 3/50 (6%)

Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
           ++++GDRV+V    G+K GV+RF G T FA+GEWCGVELDEP+GKNDG +
Sbjct: 38  ELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV 84


>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
          Clip- 170RESTIN
          Length = 84

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 50/65 (76%)

Query: 35 TDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPK 94
          +  F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V   RYFQCEP 
Sbjct: 5  SSGFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 64

Query: 95 HGIFS 99
           GIF+
Sbjct: 65 KGIFT 69



 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 36/49 (73%), Gaps = 3/49 (6%)

Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
            R+G+RV V    G+K G ++F G TQFA G+W G+ LDEPIGKNDG++
Sbjct: 8   FRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSV 53


>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
          Xmap215, Clip-170 And Eb1
          Length = 74

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 49/62 (79%)

Query: 38 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGI 97
          F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V   RYFQCEP  GI
Sbjct: 4  FRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGI 63

Query: 98 FS 99
          F+
Sbjct: 64 FT 65



 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 38/52 (73%), Gaps = 3/52 (5%)

Query: 151 GGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
           G D R+G+RV V    G+K G ++F G TQFA G+W G+ LDEPIGKNDG++
Sbjct: 1   GSDFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSV 49


>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
          Clip- 115CYLN2
          Length = 95

 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 55/75 (73%)

Query: 25 SDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVG 84
          S +++V  +    F++G+RV+V G K G + ++GET+FAPG WAGVVLDDPVGKNDG VG
Sbjct: 6  SGAAEVGDDFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVG 65

Query: 85 QARYFQCEPKHGIFS 99
            RYF+C    GIF+
Sbjct: 66 GVRYFECPALQGIFT 80



 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 3/52 (5%)

Query: 152 GDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           GD  +G+RV V    G K GV+++ G TQFA G+W GV LD+P+GKNDG +G
Sbjct: 17  GDFVVGERVWV---NGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVG 65


>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex
          With Tubulin Tail
          Length = 98

 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
          IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V   RYFQC+PK+G+F+
Sbjct: 12 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFA 71



 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 41/50 (82%), Gaps = 3/50 (6%)

Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
           ++++GDRV+V    G+K GV+RF G T FA+GEWCGVELDEP+GKNDG +
Sbjct: 9   ELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV 55


>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2
          Length = 90

 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
          IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V   RYFQC+PK+G+F+
Sbjct: 4  IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFA 63



 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 41/51 (80%), Gaps = 3/51 (5%)

Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           ++++GDRV+V    G+K GV+RF G T FA+GEWCGVELDEP+GKNDG + 
Sbjct: 1   ELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVA 48


>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
          Clip- 115CYLN2
          Length = 84

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 47/60 (78%)

Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
          +GDRV VGGTK+G + ++GET FA G+W GV LD+P+GKNDG V   RYFQC PK G+F+
Sbjct: 10 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFA 69



 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 41/49 (83%), Gaps = 3/49 (6%)

Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
           +RLGDRV+V    G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG +
Sbjct: 8   LRLGDRVLV---GGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAV 53


>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
          1700024k14rik Hypothetical Protein
          Length = 102

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
          +GDRV + G K G + F G T+FA G WAG+ LD+P GKN+G VG+ +YF+C PK+GIF+
Sbjct: 27 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFA 86



 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 39/50 (78%), Gaps = 3/50 (6%)

Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           ++LGDRV++    G K G LRF GTT+FA G+W G+ELDEP GKN+G++G
Sbjct: 25  LKLGDRVVIA---GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVG 71


>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
          Clip- 170-Related Protein Clipr59
          Length = 95

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 42/60 (70%)

Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
          +GDRV + G K+G + F G T+FA G W GV LD+P GKNDG VG  RYF C PK G+F+
Sbjct: 19 LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFA 78



 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 40/50 (80%), Gaps = 3/50 (6%)

Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           +RLGDRV++    G KTG LRF GTT+FA G+W GVELDEP GKNDG++G
Sbjct: 17  LRLGDRVLL---DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVG 63


>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse
          Clip170-Related 59kda Protein Clipr-59
          Length = 102

 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 41/60 (68%)

Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
          +GD+V V G K G + F G+T FAPG W G+ LD P GK+DG V   RYF C P+HG+F+
Sbjct: 28 VGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFA 87



 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 3/53 (5%)

Query: 150 KGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
           +G    +GD+V+V    G K G++RF G T FA G W G+ELD+P GK+DG++
Sbjct: 22  EGAKAEVGDQVLVA---GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSV 71


>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
          Restin- Like Protein 2 Reveals A Swapped-Dimer
          Length = 96

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 41/60 (68%)

Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
          +G+RV V G + G I F G T FAPG W G+ L+ P GKNDG VG  +YF C P++GIF+
Sbjct: 13 LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFA 72



 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 3/50 (6%)

Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           +RLG+RV+V+   G + G +RF GTT FA G W G+EL++P GKNDG++G
Sbjct: 11  LRLGERVLVV---GQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVG 57


>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
          Centrosome-Associated Protein Cap350
          Length = 122

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 40/62 (64%)

Query: 38 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGI 97
          F IGDRV +G  + G + F GET FA G WAGV LD P G N+G      YF+C+ KHGI
Sbjct: 32 FHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGI 91

Query: 98 FS 99
          F+
Sbjct: 92 FA 93



 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 3/48 (6%)

Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
           D  +GDRV++ + Q    G+LRFKG T FA+G W GVELD+P G N+G
Sbjct: 31  DFHIGDRVLIGNVQ---PGILRFKGETSFAKGFWAGVELDKPEGNNNG 75


>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
          Domain Of F53f4.3
          Length = 98

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 25 SDSSQVLTEDTDSFIIGDR--VYVGG--TKSGRIAFIGETKFAPGDWAGVVLDDPVGKND 80
          ++S ++  E   + ++G+R  V VG    + G +A++G TKF  G W GV  D+PVGKND
Sbjct: 2  NESDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKND 61

Query: 81 GQVGQARYFQCEPKHGIF 98
          G V   RYF C+PK+G F
Sbjct: 62 GSVAGVRYFDCDPKYGGF 79



 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 153 DIRLGDRV-IVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           +I +G+R  + + AQ ++ G + + G T+F +G W GV+ DEP+GKNDG++ 
Sbjct: 14  NIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVA 65


>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
          Domain Of F53f4.3
          Length = 95

 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 4/76 (5%)

Query: 27 SSQVLTEDTDSFIIGDR--VYVGG--TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
          S ++  E   + ++G+R  V VG    + G +A++G TKF  G W GV  D+PVGKNDG 
Sbjct: 1  SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGS 60

Query: 83 VGQARYFQCEPKHGIF 98
          V   RYF C+PK+G F
Sbjct: 61 VAGVRYFDCDPKYGGF 76



 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 153 DIRLGDRV-IVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           +I +G+R  + + AQ ++ G + + G T+F +G W GV+ DEP+GKNDG++ 
Sbjct: 11  NIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVA 62


>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
          Dynactin 1
          Length = 112

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 40 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
          +G RV V G    G +A++G T FA G W GV+LD+  GKNDG V   +YF C+  HGIF
Sbjct: 36 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 95



 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 132 SARSLSFSTP-GPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVE 190
           S R +   TP G  +S  A    +R+G RV V+  +G + G + + G T FA G+W GV 
Sbjct: 11  SKRHVYSRTPSGSRMSAEASARPLRVGSRVEVI-GKGHR-GTVAYVGATLFATGKWVGVI 68

Query: 191 LDEPIGKNDGNL 202
           LDE  GKNDG +
Sbjct: 69  LDEAKGKNDGTV 80


>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse
          Tubulin Specific Chaperone B
          Length = 113

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 7/81 (8%)

Query: 25 SDSSQVLTED---TDSFIIGDRVYV----GGTKSGRIAFIGETKFAPGDWAGVVLDDPVG 77
          ++++Q L+E+     +  +G R  V       + G + ++G T F PG W GV  D+P+G
Sbjct: 17 AEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLG 76

Query: 78 KNDGQVGQARYFQCEPKHGIF 98
          KNDG V   RYF+C+ K+G F
Sbjct: 77 KNDGSVNGKRYFECQAKYGAF 97



 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 149 AKGGDIRLGDRVIVMSAQGS-KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
           A+   I +G R  V +   S + G + + G T F  G W GV  DEP+GKNDG++
Sbjct: 28  AQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSV 82


>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
          With The Cap-Gly Domain Of P150glued
 pdb|2HQH|A Chain A, Crystal Structure Of P150glued And Clip-170
 pdb|2HQH|B Chain B, Crystal Structure Of P150glued And Clip-170
 pdb|2HQH|C Chain C, Crystal Structure Of P150glued And Clip-170
 pdb|2HQH|D Chain D, Crystal Structure Of P150glued And Clip-170
          Length = 93

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 40 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
          +G RV V G    G +A++G T FA G W GV+LD+  GKNDG V   +YF C+  HGIF
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74



 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 142 GPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGN 201
           G  +S  A    +R+G RV V+  +G + G + + G T FA G+W GV LDE  GKNDG 
Sbjct: 1   GSRMSAEASARPLRVGSRVEVI-GKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGT 58

Query: 202 L 202
           +
Sbjct: 59  V 59


>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human
          Dynactin-1 (P150- Glued)
 pdb|2HKN|B Chain B, Crystal Structure Of The Cap-Gly Domain Of Human
          Dynactin-1 (P150- Glued)
 pdb|2HKQ|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1
          In Complex With The Cap-Gly Domain Of Human Dynactin-1
          (P150-Glued)
 pdb|3E2U|A Chain A, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
          Clip-170 In Complex With Cap-Gly Domain Of Human
          Dynactin-1 (P150-Glued)
 pdb|3E2U|B Chain B, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
          Clip-170 In Complex With Cap-Gly Domain Of Human
          Dynactin-1 (P150-Glued)
 pdb|3E2U|C Chain C, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
          Clip-170 In Complex With Cap-Gly Domain Of Human
          Dynactin-1 (P150-Glued)
 pdb|3E2U|D Chain D, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
          Clip-170 In Complex With Cap-Gly Domain Of Human
          Dynactin-1 (P150-Glued)
          Length = 97

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 40 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
          +G RV V G    G +A++G T FA G W GV+LD+  GKNDG V   +YF C+  HGIF
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74



 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 142 GPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGN 201
           G  +S  A    +R+G RV V+  +G + G + + G T FA G+W GV LDE  GKNDG 
Sbjct: 1   GSHMSAEASARPLRVGSRVEVI-GKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGT 58

Query: 202 L 202
           +
Sbjct: 59  V 59


>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
          Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
          C- Terminal Hexapeptide
 pdb|2HL3|B Chain B, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
          Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
          C- Terminal Hexapeptide
 pdb|2HL5|C Chain C, Crystal Structure Of The C-Terminal Domain Of Human Eb1
          In Complex With The A49m Mutant Cap-Gly Domain Of Human
          Dynactin-1 (P150-Glued)
 pdb|2HL5|D Chain D, Crystal Structure Of The C-Terminal Domain Of Human Eb1
          In Complex With The A49m Mutant Cap-Gly Domain Of Human
          Dynactin-1 (P150-Glued)
          Length = 97

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 40 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
          +G RV V G    G +A++G T FA G W GV+LD+  GKNDG V   +YF C+  HGIF
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74



 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 142 GPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGN 201
           G  +S  A    +R+G RV V+  +G + G + + G T FA G+W GV LDE  GKNDG 
Sbjct: 1   GSHMSAEASARPLRVGSRVEVI-GKGHR-GTVAYVGMTLFATGKWVGVILDEAKGKNDGT 58

Query: 202 L 202
           +
Sbjct: 59  V 59


>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain
          Of P150glued
 pdb|3TQ7|Q Chain Q, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain
          Of P150glued
          Length = 71

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 40 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
          +G RV V G    G +A++G T FA G W GV+LD+  GKNDG V   +YF C+  HGIF
Sbjct: 3  VGSRVEVIGKGHRGTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 62



 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
           +R+G RV V+  +G + G + + G T FA G+W GV LDE  GKNDG +
Sbjct: 1   LRVGSRVEVI-GKGHR-GTVAYVGMTLFATGKWVGVILDEAKGKNDGTV 47


>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
          Kinesin- Like Protein Kif13b
          Length = 100

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%)

Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
          +++  S+   E  +    G+ V VG  K+G + ++G   F  G W GV LD P GKNDG 
Sbjct: 9  ALASDSEEADEVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGS 68

Query: 83 VGQARYFQCEPKHGIF 98
          +G  +YF+C P +G+ 
Sbjct: 69 IGGKQYFRCNPGYGLL 84



 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           +R G+ V V +    KTGV+R+ G   F +G W GVELD P GKNDG++G
Sbjct: 24  LREGEFVTVGA---HKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIG 70


>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse
          1700024k14rik Hypothetical Protein
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 13/77 (16%)

Query: 22 VSISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDG 81
          V + + SQVL   ++                 + ++G T FA G W G+ L    GKNDG
Sbjct: 11 VKLHEGSQVLLTSSNEM-------------ATVRYVGPTDFASGIWLGLELRSAKGKNDG 57

Query: 82 QVGQARYFQCEPKHGIF 98
           VG  RYF C+P +G+ 
Sbjct: 58 AVGDKRYFTCKPNYGVL 74



 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
           ++L +   V+    ++   +R+ G T FA G W G+EL    GKNDG +G
Sbjct: 11  VKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVG 60


>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
          Domain
 pdb|4B6M|B Chain B, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
          Domain
          Length = 84

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 36 DSFIIGDRVYV-GGTKSGRIAFIGET-KFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEP 93
          ++  +GDR     G + G + F+G      PG W GV  D+PVGK DG V   R FQC+P
Sbjct: 4  ETIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQP 63

Query: 94 KHGIF 98
           +G F
Sbjct: 64 NYGGF 68



 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 154 IRLGDRVIVMSAQGSKTGVLRFKG-TTQFAQGEWCGVELDEPIGKNDGNL 202
           I +GDR   +   G + G +RF G       G W GVE DEP+GK DG +
Sbjct: 6   IHVGDRC--LCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTV 53


>pdb|2NYA|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
           (Nap) From Escherichia Coli
 pdb|2NYA|F Chain F, Crystal Structure Of The Periplasmic Nitrate Reductase
           (Nap) From Escherichia Coli
          Length = 792

 Score = 27.7 bits (60), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 149 AKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQG 184
           AK  D+R GD+V V+S +G    ++  +G  +  QG
Sbjct: 717 AKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQG 752


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,641,268
Number of Sequences: 62578
Number of extensions: 212992
Number of successful extensions: 446
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 53
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)