BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18049
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 202 bits (515), Expect = 9e-52, Method: Composition-based stats.
Identities = 105/180 (58%), Positives = 125/180 (69%), Gaps = 8/180 (4%)
Query: 26 DSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 85
+SS VLT +T+ FIIG RV++GGT+ G+IAFIG+T FA G+WAGVVLD+P GKNDG V
Sbjct: 111 NSSAVLTANTEQFIIGQRVWLGGTRPGQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSG 170
Query: 86 ARYFQCEPKHGIFSRLTRLTRTPL-DLPPPATPTPGARGD--GFISPTGSARSLSFSTPG 142
RYFQCEPK GIFSRLTRLT PL P +P + D +SPT S RS +PG
Sbjct: 171 KRYFQCEPKRGIFSRLTRLTTYPLAGAQTPTSPLAKSSPDRSRTVSPTASIRSSMLRSPG 230
Query: 143 PGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
G K G + +GDRVIV S GS+ G+LR+ G TQFA G WCGVELDEP GKNDG +
Sbjct: 231 IG----GKNG-MAVGDRVIVSSGFGSRPGILRYLGETQFAPGNWCGVELDEPSGKNDGTV 285
Score = 85.9 bits (211), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 53/72 (73%), Gaps = 3/72 (4%)
Query: 40 IGDRVYVG---GTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHG 96
+GDRV V G++ G + ++GET+FAPG+W GV LD+P GKNDG V RYF+C+PK+G
Sbjct: 239 VGDRVIVSSGFGSRPGILRYLGETQFAPGNWCGVELDEPSGKNDGTVDDIRYFECKPKYG 298
Query: 97 IFSRLTRLTRTP 108
+F + +++ +P
Sbjct: 299 VFVPIAKVSLSP 310
>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1
PE=1 SV=2
Length = 1438
Score = 167 bits (423), Expect = 4e-41, Method: Composition-based stats.
Identities = 95/216 (43%), Positives = 120/216 (55%), Gaps = 41/216 (18%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
S + SS+ E D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG
Sbjct: 43 SSTPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS 102
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRT--PLDLPPPATPTPGARGDG-FISPTGSARSLSFS 139
V RYFQCEP GIF+R ++LTR D TP +R + T S S S S
Sbjct: 103 VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQTTPASRATSPLCTSTASMVSSSPS 162
Query: 140 TPG--------PGLSTPA-------------------------KGG--DIRLGDRVIVMS 164
TP P P+ K G ++++GDRV+V
Sbjct: 163 TPSNIPQKPSQPAAKEPSATPPISNLTKTASESISNLSEAGSIKKGERELKIGDRVLV-- 220
Query: 165 AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
G+K GV+RF G T FA+GEWCGVELDEP+GKNDG
Sbjct: 221 -GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDG 255
Score = 100 bits (248), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/82 (52%), Positives = 57/82 (69%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+PK+G+F+
Sbjct: 214 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFA 273
Query: 100 RLTRLTRTPLDLPPPATPTPGA 121
+ ++T+ PA A
Sbjct: 274 PVHKVTKIGFPSTTPAKAKANA 295
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
D R+G+RV V G+K G ++F G TQFA G+W G+ LDEPIGKNDG++
Sbjct: 57 DFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 104
>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1
PE=1 SV=1
Length = 1391
Score = 165 bits (418), Expect = 2e-40, Method: Composition-based stats.
Identities = 92/212 (43%), Positives = 120/212 (56%), Gaps = 42/212 (19%)
Query: 27 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 86
SS+ E D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V
Sbjct: 47 SSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGV 106
Query: 87 RYFQCEPKHGIFSRLTRLTR-------------------TPLDL-------PPPATPT-- 118
RYFQCEP GIF+R ++LTR +PL PATP+
Sbjct: 107 RYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSPATPSNI 166
Query: 119 ---PGARGDGFISPTGSARSLSFSTPGPGLSTPAKGG-------DIRLGDRVIVMSAQGS 168
P S T +L+ T +S ++ G ++++GDRV+V G+
Sbjct: 167 PHKPSQSTAKEPSATPQISNLT-KTASESISNLSEAGSVKKGERELKVGDRVLV---GGT 222
Query: 169 KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
K GV+RF G T FA+GEWCGVELDEP+GKNDG
Sbjct: 223 KAGVVRFLGETDFAKGEWCGVELDEPLGKNDG 254
Score = 99.4 bits (246), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
+GDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+PK+G+F+
Sbjct: 213 VGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFA 272
Query: 100 RLTRLTRTPLDLPPPATP 117
+ ++T+ P TP
Sbjct: 273 PVHKVTKIGF---PSTTP 287
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
D R+G+RV V G+K G ++F G TQFA G+W G+ LDEPIGKNDG++
Sbjct: 57 DFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 104
>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2
PE=1 SV=1
Length = 1046
Score = 163 bits (413), Expect = 6e-40, Method: Composition-based stats.
Identities = 88/193 (45%), Positives = 110/193 (56%), Gaps = 39/193 (20%)
Query: 38 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGI 97
F++G+RV+V G K G + ++GET+FAPG WAGVVLDDPVGKNDG VG RYF+C GI
Sbjct: 79 FVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGI 138
Query: 98 FSRLTRLTRTPLDLPPPATPTPGARGDGFISPTGSARSLSFSTPGPGLS----------- 146
F+R ++LTR P G+ S T SL T P L+
Sbjct: 139 FTRPSKLTRQ------PTAEGSGSDAHSVESLTAQNLSLHSGTATPPLTSRVIPLRESVL 192
Query: 147 -TPAKGG------------------DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWC 187
+ K G D+RLGDRV+V G+KTGV+R+ G T FA+GEWC
Sbjct: 193 NSSVKTGNESGSNLSDSGSVKRGEKDLRLGDRVLV---GGTKTGVVRYVGETDFAKGEWC 249
Query: 188 GVELDEPIGKNDG 200
GVELDEP+GKNDG
Sbjct: 250 GVELDEPLGKNDG 262
Score = 97.1 bits (240), Expect = 7e-20, Method: Composition-based stats.
Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
++SDS V + D +GDRV VGGTK+G + ++GET FA G+W GV LD+P+GKNDG
Sbjct: 205 NLSDSGSVKRGEKD-LRLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGA 263
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRTPLDLPPPATPTPGAR 122
V RYFQC PK G+F+ + ++ R PA R
Sbjct: 264 VAGTRYFQCPPKFGLFAPIHKVIRIGFPSTSPAKAKKTKR 303
Score = 60.5 bits (145), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Query: 152 GDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
GD +G+RV V G K GV+++ G TQFA G+W GV LD+P+GKNDG +G
Sbjct: 77 GDFVVGERVWV---NGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVG 125
>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus
GN=Clip2 PE=1 SV=1
Length = 1046
Score = 162 bits (410), Expect = 1e-39, Method: Composition-based stats.
Identities = 89/193 (46%), Positives = 111/193 (57%), Gaps = 39/193 (20%)
Query: 38 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGI 97
F++G+RV+V G K G + ++GET+FAPG WAGVVLDDPVGKNDG VG RYF+C GI
Sbjct: 80 FVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGLRYFECPALQGI 139
Query: 98 FSRLTRLTRTPLDLPPPATPTPGARGDGFISPTGSARSLSFSTPGPGLS----------- 146
F+R ++LTR PA G+ G S T SL T P L+
Sbjct: 140 FTRPSKLTRQ------PAAEGSGSDGHSVESLTAQNLSLHSGTATPPLTGRVIPLRESVL 193
Query: 147 -TPAKGG------------------DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWC 187
+ K G D+ LGDRV+V G+KTGV+R+ G T FA+GEWC
Sbjct: 194 NSSVKTGNESGSNLSDSGSVKRGDKDLHLGDRVLV---GGTKTGVVRYVGETDFAKGEWC 250
Query: 188 GVELDEPIGKNDG 200
GVELDEP+GKNDG
Sbjct: 251 GVELDEPLGKNDG 263
Score = 97.8 bits (242), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
++SDS V D D +GDRV VGGTK+G + ++GET FA G+W GV LD+P+GKNDG
Sbjct: 206 NLSDSGSVKRGDKD-LHLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGA 264
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRTPLDLPPPA 115
V RYFQC PK G+F+ + ++ R PA
Sbjct: 265 VAGTRYFQCPPKFGLFAPIHKVIRIGFPSTSPA 297
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 128 SPTGSARSLSFSTPGPGLSTPAKG--GDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGE 185
S G+ ++S PGP + GD +G+RV V G K GV+++ G TQFA G+
Sbjct: 53 SSAGATTTVS-EKPGPKAAEVGDDFLGDFVVGERVWV---NGVKPGVVQYLGETQFAPGQ 108
Query: 186 WCGVELDEPIGKNDGNLG 203
W GV LD+P+GKNDG +G
Sbjct: 109 WAGVVLDDPVGKNDGAVG 126
>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2
PE=1 SV=2
Length = 1047
Score = 158 bits (400), Expect = 2e-38, Method: Composition-based stats.
Identities = 87/193 (45%), Positives = 109/193 (56%), Gaps = 39/193 (20%)
Query: 38 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGI 97
F++G+RV+V G K G + ++GET+FAPG WAGVVLDDPVGKNDG VG RYF+C GI
Sbjct: 80 FVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGI 139
Query: 98 FSRLTRLTRTPLDLPPPATPTPGARGDGFISPTGSARSLSFSTPGPGLS----------- 146
F+R ++LTR P G+ S T SL T P L+
Sbjct: 140 FTRPSKLTRQ------PTAEGSGSDTHSVESLTAQNLSLHSGTATPPLTGRVIPLRESVL 193
Query: 147 -TPAKGG------------------DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWC 187
+ K G D+ LGDRV+V G+KTGV+R+ G T FA+GEWC
Sbjct: 194 NSSVKTGNESGSNLSDSGSVKRGDKDLHLGDRVLV---GGTKTGVVRYVGETDFAKGEWC 250
Query: 188 GVELDEPIGKNDG 200
GVELDEP+GKNDG
Sbjct: 251 GVELDEPLGKNDG 263
Score = 97.8 bits (242), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
++SDS V D D +GDRV VGGTK+G + ++GET FA G+W GV LD+P+GKNDG
Sbjct: 206 NLSDSGSVKRGDKD-LHLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGA 264
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRTPLDLPPPA 115
V RYFQC PK G+F+ + ++ R PA
Sbjct: 265 VAGTRYFQCPPKFGLFAPIHKVIRIGFPSTSPA 297
Score = 63.5 bits (153), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Query: 128 SPTGSARSLSFSTPGPGLSTPAKG--GDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGE 185
S +G+A ++S PGP + GD +G+RV V G K GV+++ G TQFA G+
Sbjct: 53 SSSGAATTVS-EKPGPKAAEVGDDFLGDFVVGERVWV---NGVKPGVVQYLGETQFAPGQ 108
Query: 186 WCGVELDEPIGKNDGNLG 203
W GV LD+P+GKNDG +G
Sbjct: 109 WAGVVLDDPVGKNDGAVG 126
>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus
GN=CLIP1 PE=2 SV=1
Length = 1433
Score = 156 bits (395), Expect = 7e-38, Method: Composition-based stats.
Identities = 86/210 (40%), Positives = 112/210 (53%), Gaps = 53/210 (25%)
Query: 36 DSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKH 95
D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQCEP
Sbjct: 57 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLR 116
Query: 96 GIFSRLTRLTRT--------------------------------------PLDLPPPATP 117
GIF+R ++L+R P +P +P
Sbjct: 117 GIFTRPSKLSRKVLTEDEANGTQTAHASRATSPTSTSTASAVSASPAALLPSGIPQKTSP 176
Query: 118 -------TPGARGDGFISPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKT 170
TP + +S T S + S G S ++++GDRV+V G+K
Sbjct: 177 LAAKEHSTPSQFSN--LSKTASGSVSNLSEAG---SLKKGERELKIGDRVLV---GGTKA 228
Query: 171 GVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
GV+RF G T FA+GEWCGVELDEP+GKNDG
Sbjct: 229 GVVRFLGETDFAKGEWCGVELDEPLGKNDG 258
Score = 99.4 bits (246), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 7/128 (5%)
Query: 2 QTTTMTITTENRNPFQNCFLV-----SISDSSQV--LTEDTDSFIIGDRVYVGGTKSGRI 54
Q T+ E+ P Q L S+S+ S+ L + IGDRV VGGTK+G +
Sbjct: 172 QKTSPLAAKEHSTPSQFSNLSKTASGSVSNLSEAGSLKKGERELKIGDRVLVGGTKAGVV 231
Query: 55 AFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTPLDLPPP 114
F+GET FA G+W GV LD+P+GKNDG V RYFQC+P++G+F+ + ++T+ P
Sbjct: 232 RFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPRYGLFAPVHKVTKIGFPSTTP 291
Query: 115 ATPTPGAR 122
A R
Sbjct: 292 AKAKTTVR 299
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
D R+G+RV V G+K G ++F G TQFA G+W G+ LDEPIGKNDG++
Sbjct: 58 DFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 105
>sp|Q5U243|CLIP3_XENLA CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis
GN=clip3 PE=2 SV=1
Length = 534
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 98/166 (59%), Gaps = 6/166 (3%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
+GDR+ + K+G + F G T+FA G W GV LD+P GKNDG VG RYF C PK GIF+
Sbjct: 286 LGDRILLDAEKAGTLRFCGTTEFASGQWVGVELDEPDGKNDGSVGGIRYFICPPKQGIFA 345
Query: 100 RLTRLTRTPLDLPPPATPTPGARGDGFISPTGSARSLSFSTPGPGLSTPA---KGGDIRL 156
++++++ P P T TP F TG R +T LS + +G I +
Sbjct: 346 PVSKISKAPDQPPSSVTSTPRTPRVDFSRVTGKGRKEKKATHKKSLSVGSLDREGLKIEI 405
Query: 157 GDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
GD+V+V G K G++RF G T FA G W G+EL++P GK+DG++
Sbjct: 406 GDQVLV---AGQKQGIVRFYGKTDFAPGYWFGIELEKPTGKHDGSV 448
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
IGD+V V G K G + F G+T FAPG W G+ L+ P GK+DG V RYF C K+G+F+
Sbjct: 405 IGDQVLVAGQKQGIVRFYGKTDFAPGYWFGIELEKPTGKHDGSVFGVRYFTCSAKNGVFA 464
Query: 100 RLTRLTR 106
+R+ R
Sbjct: 465 PPSRVQR 471
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
++LGDR+++ K G LRF GTT+FA G+W GVELDEP GKNDG++G
Sbjct: 284 LKLGDRILL---DAEKAGTLRFCGTTEFASGQWVGVELDEPDGKNDGSVG 330
>sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3
PE=1 SV=3
Length = 547
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 100/170 (58%), Gaps = 11/170 (6%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
+GDRV + G K+G + F G T+FA G W GV LD+P GKNDG VG RYF C PK G+F+
Sbjct: 296 LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFA 355
Query: 100 RLTRLTRTPLDLPPPA-TPTPGARGDGFISPTGSAR------SLSFSTPGPGLSTPAKGG 152
++++++ +D PP + T TP F TG R + S+P G G
Sbjct: 356 SVSKISKA-VDAPPSSVTSTPRTPRMDFSRVTGKGRREHKGKKKTPSSPSLGSLQQRDGA 414
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
+GD+V+V G K G++RF G T FA G W G+ELD+P GK+DG++
Sbjct: 415 KAEVGDQVLVA---GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSV 461
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
+GD+V V G K G + F G+T FAPG W G+ LD P GK+DG V RYF C P+HG+F+
Sbjct: 418 VGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGVFA 477
Query: 100 RLTRLTR 106
+R+ R
Sbjct: 478 PASRIQR 484
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
+RLGDRV++ G KTG LRF GTT+FA G+W GVELDEP GKNDG++G
Sbjct: 294 LRLGDRVLL---DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVG 340
>sp|Q5R686|CLIP3_PONAB CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3
PE=2 SV=1
Length = 547
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 11/170 (6%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
+GDRV + G K+G + F G T+FA G W GV LD+P GKNDG VG RYF C PK G+F+
Sbjct: 296 LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFA 355
Query: 100 RLTRLTRTPLDLPPPA-TPTPGARGDGFISPTGSAR------SLSFSTPGPGLSTPAKGG 152
++++++ +D PP + T TP F TG R + S+P G
Sbjct: 356 SVSKISKA-VDAPPSSVTSTPRTPRMDFSRVTGKGRREHKGKKKTPSSPSLGSLQQRDRA 414
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
+GD+V+V G K G++RF G T FA G W G+ELD+P GK+DG++
Sbjct: 415 KAEVGDQVLVA---GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSV 461
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
+GD+V V G K G + F G+T FAPG W G+ LD P GK+DG V RYF C P+HG+F+
Sbjct: 418 VGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGVFA 477
Query: 100 RLTRLTR 106
+R+ R
Sbjct: 478 PASRIQR 484
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
+RLGDRV++ G KTG LRF GTT+FA G+W GVELDEP GKNDG++G
Sbjct: 294 LRLGDRVLL---DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVG 340
>sp|B9EHT4|CLIP3_MOUSE CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3
PE=1 SV=1
Length = 547
Score = 120 bits (300), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 101/170 (59%), Gaps = 11/170 (6%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
+GDRV + G K+G + F G T+FA G W GV LD+P GKNDG VG RYF C PK G+F+
Sbjct: 296 LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFA 355
Query: 100 RLTRLTRTPLDLPPPA-TPTPGARGDGFISPTGSAR------SLSFSTPGPGLSTPAKGG 152
++++++ +D PP + T TP F TG R S S+P G +G
Sbjct: 356 SVSKVSKA-VDAPPSSVTSTPRTPRMDFSRVTGKGRREHKGKKKSPSSPSLGSLQQREGA 414
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
+GD+V+V G K G++RF G T FA G W G+ELD+P GK+DG++
Sbjct: 415 KAEVGDQVLVA---GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSV 461
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
+GD+V V G K G + F G+T FAPG W G+ LD P GK+DG V RYF C P+HG+F+
Sbjct: 418 VGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFA 477
Query: 100 RLTRLTR 106
+R+ R
Sbjct: 478 PASRIQR 484
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
+RLGDRV++ G KTG LRF GTT+FA G+W GVELDEP GKNDG++G
Sbjct: 294 LRLGDRVLL---DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVG 340
>sp|Q8N3C7|CLIP4_HUMAN CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4
PE=1 SV=1
Length = 705
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 96/184 (52%), Gaps = 20/184 (10%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF- 98
+G+RV V G + G I F G T FAPG W G+ L+ P GKNDG VG +YF C P++GIF
Sbjct: 487 LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFA 546
Query: 99 --SRLTRLTRTPLDLPPPATPTPGARGDGF---ISPTGSA------RSLSFSTPGPGL-- 145
SR+ R+T + L ++ GF S T ++ R +FS L
Sbjct: 547 PPSRVQRVTDSLDTLSEISSNKQNHSYPGFRRSFSTTSASSQKEINRRNAFSKSKAALRR 606
Query: 146 ---STPAKG---GDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKND 199
STP G G ++L + V+ ++ G +R+ G T FA G W G+EL GKND
Sbjct: 607 SWSSTPTAGGIEGSVKLHEGSQVLLTSSNEMGTVRYVGPTDFASGIWLGLELRSAKGKND 666
Query: 200 GNLG 203
G++G
Sbjct: 667 GSVG 670
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 51/67 (76%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
+GDRV + G K G + F G T+FA G WAG+ LD+P GKN+G VG+ +YF+C PK+GIF+
Sbjct: 285 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIFA 344
Query: 100 RLTRLTR 106
L+++++
Sbjct: 345 PLSKISK 351
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 39/50 (78%), Gaps = 3/50 (6%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
++LGDRV++ G K G LRF GTT+FA G+W G+ELDEP GKN+G++G
Sbjct: 283 LKLGDRVVIA---GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVG 329
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 22 VSISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDG 81
V + + SQVL ++ G + ++G T FA G W G+ L GKNDG
Sbjct: 621 VKLHEGSQVLLTSSNEM-------------GTVRYVGPTDFASGIWLGLELRSAKGKNDG 667
Query: 82 QVGQARYFQCEPKHGIFSRLTRLT 105
VG RYF C+P HG+ R +R+T
Sbjct: 668 SVGDKRYFTCKPNHGVLVRPSRVT 691
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%), Gaps = 3/52 (5%)
Query: 152 GDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
G++RLG+RV+V+ G + G +RF GTT FA G W G+EL++P GKNDG++G
Sbjct: 483 GELRLGERVLVV---GQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVG 531
>sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4
PE=1 SV=1
Length = 704
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 92/189 (48%), Gaps = 30/189 (15%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF- 98
+G+RV V G + G I F G T FAPG W G+ L+ P GKNDG VG +YF C P++GIF
Sbjct: 486 LGERVLVVGQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFA 545
Query: 99 --SRLTRLTRTPLDLPPPATPTPGARGDGF---ISPTGSA-------------------R 134
SR+ RL+ + L ++ GF S T ++ R
Sbjct: 546 PPSRVQRLSDSLDTLSEISSNKQNHSYPGFRRSFSTTSASSQKEINRRNAFAKTKTTLRR 605
Query: 135 SLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEP 194
S S ST GL G ++L + V+ ++ +R+ G T FA G W G+EL
Sbjct: 606 SWSSSTTAGGLE-----GTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSA 660
Query: 195 IGKNDGNLG 203
GKNDG +G
Sbjct: 661 KGKNDGAVG 669
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 5/88 (5%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
+GDRV + G K G + F G T+FA G WAG+ LD+P GKN+G VG+ +YF+C PK+GIF+
Sbjct: 285 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFA 344
Query: 100 RLTRLT-----RTPLDLPPPATPTPGAR 122
L++++ R P TP AR
Sbjct: 345 PLSKISKLKDGRKTTTHTPSTRATPHAR 372
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 39/50 (78%), Gaps = 3/50 (6%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
++LGDRV++ G K G LRF GTT+FA G+W G+ELDEP GKN+G++G
Sbjct: 283 LKLGDRVVIA---GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVG 329
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 54 IAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLT 105
+ ++G T FA G W G+ L GKNDG VG RYF C+P +G+ R +R+T
Sbjct: 639 VRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVT 690
>sp|Q66HD5|CLIP4_RAT CAP-Gly domain-containing linker protein 4 OS=Rattus norvegicus
GN=Clip4 PE=2 SV=1
Length = 599
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 60/89 (67%), Gaps = 5/89 (5%)
Query: 18 NCFLVSISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVG 77
NC I+ S +LT T +GDRV + G K G + F G T+FA G WAG+ LD+P G
Sbjct: 268 NC---DITTSKAMLT--TLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEG 322
Query: 78 KNDGQVGQARYFQCEPKHGIFSRLTRLTR 106
KN+G VG+ +YF+C PK+GIF+ L+++T+
Sbjct: 323 KNNGSVGRVQYFKCAPKYGIFAPLSKITK 351
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF- 98
+G+RV V G + G I F G T FAPG W G+ L+ P GKNDG VG +YF C P++GIF
Sbjct: 487 LGERVLVVGQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFA 546
Query: 99 --SRLTRLT 105
SR+ RL+
Sbjct: 547 PPSRVQRLS 555
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 39/50 (78%), Gaps = 3/50 (6%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
++LGDRV++ G K G LRF GTT+FA G+W G+ELDEP GKN+G++G
Sbjct: 283 LKLGDRVVIA---GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVG 329
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 129 PTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCG 188
P+ ++ L ST +T +G +RLG+RV+V+ G + G ++F GTT FA G W G
Sbjct: 461 PSRASAGLKSSTTSAANNTHREGA-LRLGERVLVV---GQRVGTIKFFGTTNFAPGYWYG 516
Query: 189 VELDEPIGKNDGNLG 203
+EL++P GKNDG++G
Sbjct: 517 IELEKPHGKNDGSVG 531
>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1
Length = 1232
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 40 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
+G RV V G G +A++G T FA G W GV+LDD GKNDG V RYF CE HGIF
Sbjct: 12 VGSRVEVIGKGYRGTVAYVGATLFATGKWVGVILDDSKGKNDGTVQGRRYFTCEENHGIF 71
Query: 99 SRLTRLT--RTPLDLPPPATPTPGA 121
R +++ D P TP P A
Sbjct: 72 VRQSQIQVIEDGADTTSPETPEPTA 96
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 145 LSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
+S A G +++G RV V+ +G + G + + G T FA G+W GV LD+ GKNDG +
Sbjct: 1 MSVEATGKPLKVGSRVEVI-GKGYR-GTVAYVGATLFATGKWVGVILDDSKGKNDGTV 56
>sp|Q5VT06|CE350_HUMAN Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1
Length = 3117
Score = 73.6 bits (179), Expect = 8e-13, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 38 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGI 97
F IGDRV +G + G + F GET FA G WAGV LD P G N+G YF+C+ KHGI
Sbjct: 2497 FHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGI 2556
Query: 98 FSRLTRLTRTP 108
F+ +++ P
Sbjct: 2557 FAPPQKISHIP 2567
Score = 57.0 bits (136), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
D +GDRV++ + Q G+LRFKG T FA+G W GVELD+P G N+G
Sbjct: 2496 DFHIGDRVLIGNVQ---PGILRFKGETSFAKGFWAGVELDKPEGNNNG 2540
>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3
PE=1 SV=1
Length = 229
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 25 SDSSQVLTEDTDSFIIGDR--VYVGG--TKSGRIAFIGETKFAPGDWAGVVLDDPVGKND 80
++S ++ E + ++G+R V VG + G +A++G TKF G W GV D+PVGKND
Sbjct: 133 NESDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKND 192
Query: 81 GQVGQARYFQCEPKHGIFSR 100
G V RYF C+PK+G F R
Sbjct: 193 GSVAGVRYFDCDPKYGGFVR 212
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 153 DIRLGDRV-IVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
+I +G+R + + AQ ++ G + + G T+F +G W GV+ DEP+GKNDG++
Sbjct: 145 NIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVA 196
>sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=2 SV=2
Length = 1280
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 40 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ HGIF
Sbjct: 29 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 88
Query: 99 SRLTRLT--RTPLDLPPPATPTPGA 121
R +++ D P TP A
Sbjct: 89 VRQSQIQVFEDGADTTSPETPDSSA 113
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 132 SARSLSFSTP-GPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVE 190
S R + TP G +ST A +R+G RV V+ +G + G + + G T FA G+W GV
Sbjct: 4 SKRHMYNRTPSGSRMSTEASARPLRVGSRVEVI-GKGHR-GTVAYVGATLFATGKWVGVI 61
Query: 191 LDEPIGKNDGNL 202
LDE GKNDG +
Sbjct: 62 LDEAKGKNDGTV 73
>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-3
PE=3 SV=3
Length = 1367
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 51 SGRIAFI---GETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLT 102
SGR AF+ GET FAPG W G+ LD+P GKNDG V RYF CE +G+F R T
Sbjct: 18 SGRTAFVRYVGETAFAPGTWVGIELDEPSGKNDGSVQGERYFNCEMGYGMFVRPT 72
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
+ +G ++ + G +T +R+ G T FA G W G+ELDEP GKNDG++
Sbjct: 6 VAVGQKIELADGSG-RTAFVRYVGETAFAPGTWVGIELDEPSGKNDGSV 53
>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3
Length = 1278
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 40 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ HGIF
Sbjct: 29 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 88
Query: 99 SRLTRLT--RTPLDLPPPATPTPGA 121
R +++ D P TP A
Sbjct: 89 VRQSQIQVFEDGADTTSPETPDSSA 113
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 132 SARSLSFSTP-GPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVE 190
S R + TP G +S A +R+G RV V+ +G + G + + G T FA G+W GV
Sbjct: 4 SKRHVYSRTPSGSRMSAEASARPLRVGSRVEVI-GKGHR-GTVAYVGATLFATGKWVGVI 61
Query: 191 LDEPIGKNDGNL 202
LDE GKNDG +
Sbjct: 62 LDEAKGKNDGTV 73
>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3
Length = 1281
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 40 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ HGIF
Sbjct: 29 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 88
Query: 99 SRLTRLT--RTPLDLPPPATPTPGA 121
R +++ D P TP A
Sbjct: 89 VRQSQIQVFEDGADTTSPETPDSSA 113
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 132 SARSLSFSTP-GPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVE 190
S R +S TP G +ST A +R+G RV V+ +G + G + + G T FA G+W GV
Sbjct: 4 SRRHMSSRTPSGSRMSTEASARPLRVGSRVEVI-GKGHR-GTVAYVGATLFATGKWVGVI 61
Query: 191 LDEPIGKNDGNL 202
LDE GKNDG +
Sbjct: 62 LDEAKGKNDGTV 73
>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
Length = 1224
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 40 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
+G RV V G G +A++G T A G W GV+LD+ GKNDG V +YF CE HGIF
Sbjct: 30 VGSRVEVIGKGHRGTVAYVGATLXATGKWVGVILDEAKGKNDGTVQGRKYFTCEENHGIF 89
Query: 99 SRLTRLT--RTPLDLPPPATPTPGA 121
R +++ D P TP A
Sbjct: 90 VRQSQIQVFEDGADTTSPETPESAA 114
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 139 STPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKN 198
S+ GP +ST A +++G RV V+ +G + G + + G T A G+W GV LDE GKN
Sbjct: 13 SSAGPRMSTEASSKPLKVGSRVEVI-GKGHR-GTVAYVGATLXATGKWVGVILDEAKGKN 70
Query: 199 DGNL 202
DG +
Sbjct: 71 DGTV 74
>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2
Length = 1265
Score = 67.4 bits (163), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 40 IGDRVYVGGTKS-GRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIF 98
+G RV + G G +A++G T FA G W GVVLD+P GKN G + +YFQC+ G+F
Sbjct: 8 VGARVELTGKDLLGTVAYVGMTSFAVGKWVGVVLDEPKGKNSGSIKGQQYFQCDENCGMF 67
Query: 99 SRLTRL--------TRTPLDLPPPATPT 118
R T+L +R ++ ATPT
Sbjct: 68 VRPTQLRLLEAAPGSRRSIEDVSGATPT 95
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 171 GVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
G + + G T FA G+W GV LDEP GKN G++
Sbjct: 21 GTVAYVGMTSFAVGKWVGVVLDEPKGKNSGSI 52
>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1
Length = 1826
Score = 67.0 bits (162), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 41 GDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSR 100
G+ V VG K+G + ++G F G W GV LD P GKNDG +G +YF+C P +G+ R
Sbjct: 1704 GEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVR 1763
Query: 101 LTRLTR 106
+R+ R
Sbjct: 1764 PSRVRR 1769
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 106 RTPLDLPPPATPTPGAR--------------GDGFISPTGSARSLSFSTPGPGLSTPAKG 151
R L+ P P +P R GD SP + P PG A
Sbjct: 1634 RPDLEAPAPGSPFRVRRVRASELRSFSRMLAGDPGCSPGAEGNA-----PAPGAGGQALA 1688
Query: 152 GDIRLGDRVIVMSAQGS-------KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
D D V +G KTGV+R+ G F +G W GVELD P GKNDG++G
Sbjct: 1689 SDSEEADEVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIG 1747
>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2
Length = 244
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 25 SDSSQVLTED---TDSFIIGDRVYV----GGTKSGRIAFIGETKFAPGDWAGVVLDDPVG 77
++++Q L+E+ + +G R V + G + ++G T F PG W GV D+P+G
Sbjct: 143 AEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLG 202
Query: 78 KNDGQVGQARYFQCEPKHGIFSRLTRLT 105
KNDG V RYF+C+ K+G F + + +T
Sbjct: 203 KNDGSVNGKRYFECQAKYGAFVKPSAVT 230
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 149 AKGGDIRLGDRVIVMSAQGS-KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
A+ I +G R V + S + G + + G T F G W GV DEP+GKNDG++
Sbjct: 154 AQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVN 209
>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb
PE=3 SV=1
Length = 270
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 9/79 (11%)
Query: 22 VSISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDG 81
+ + D +V+++D ++ + G++ ++G +F+ G W GV LD P+GKNDG
Sbjct: 187 IKVGDRCKVISDDPTNY---------DERLGKVQYVGTVEFSSGVWIGVELDLPLGKNDG 237
Query: 82 QVGQARYFQCEPKHGIFSR 100
V +YFQC PK+G F++
Sbjct: 238 SVKGKQYFQCSPKYGCFAK 256
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 153 DIRLGDRVIVMS----AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
+I++GDR V+S + G +++ GT +F+ G W GVELD P+GKNDG++
Sbjct: 186 EIKVGDRCKVISDDPTNYDERLGKVQYVGTVEFSSGVWIGVELDLPLGKNDGSV 239
>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2
Length = 244
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 50 KSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSR 100
+ G + ++G T F PG W GV D+P+GKNDG V RYF+C+ K+G F +
Sbjct: 175 RRGTVMYVGLTDFKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVK 225
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 149 AKGGDIRLGDRVIVMSA-QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
A+ I +G R V +A Q + G + + G T F G W GV DEP+GKNDG++
Sbjct: 154 AQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTDFKPGYWIGVRYDEPLGKNDGSV 208
>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1
Length = 244
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 50 KSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLT 105
+ G + ++G T F PG W G+ D+P+GKNDG V RYF+C+ K+G F + + +T
Sbjct: 175 RRGTVMYVGLTDFKPGYWIGIRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSVVT 230
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 145 LSTPAKGGDIRLGDRVIVMS-AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203
+ A+ I +G R V + Q + G + + G T F G W G+ DEP+GKNDG++
Sbjct: 150 IEEEAQASTIPVGSRCEVRTPGQPPRRGTVMYVGLTDFKPGYWIGIRYDEPLGKNDGSVN 209
>sp|P33420|NIP80_YEAST Protein NIP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NIP100 PE=1 SV=2
Length = 868
Score = 57.8 bits (138), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 42 DRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPK 94
D V V K GR+ FIGET+FA G W G+ LD P+GKNDG RYF + K
Sbjct: 19 DTVLVNEMK-GRVKFIGETQFAKGIWYGIELDKPLGKNDGSANGIRYFDIDLK 70
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGN 201
I L D V+V +G ++F G TQFA+G W G+ELD+P+GKNDG+
Sbjct: 15 ISLQDTVLVNEMKGR----VKFIGETQFAKGIWYGIELDKPLGKNDGS 58
>sp|O42667|SSM4_SCHPO Microtubule-associated protein ssm4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssm4 PE=1 SV=1
Length = 670
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
+GD V + G + G + F G T F G W GV L + GKNDG V RYF CE GIF
Sbjct: 6 VGDEVLIRG-ELGIVRFAGSTDFESGIWLGVELLNGKGKNDGSVKGKRYFSCEKGKGIFV 64
Query: 100 R 100
R
Sbjct: 65 R 65
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
+ +GD V++ + G++RF G+T F G W GVEL GKNDG++
Sbjct: 4 LSVGDEVLIRG----ELGIVRFAGSTDFESGIWLGVELLNGKGKNDGSV 48
>sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=alp11 PE=1 SV=1
Length = 234
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGD--WAGVVLDDPVGKNDGQVGQARYFQCEPKHGI 97
+ R G + G I +IG D W GV D+PVGKNDG V RYF + KHG
Sbjct: 154 LNSRCCAAGERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYFNAKNKHGS 213
Query: 98 FSRLTRLTRTPLDLPP 113
F R + + D PP
Sbjct: 214 FLRSSEVEVG--DFPP 227
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 165 AQGSKTGVLRFKGTTQFAQGE--WCGVELDEPIGKNDGNLG 203
A G + G +R+ G + W GVE DEP+GKNDG +
Sbjct: 160 AAGERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVS 200
>sp|P34531|YM92_CAEEL Uncharacterized protein M01A8.2 OS=Caenorhabditis elegans
GN=M01A8.2 PE=4 SV=4
Length = 937
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFS 99
IG V V G + ++G G + G+ L +P GK+DG YF P HGIF+
Sbjct: 21 IGRLVDVVNVGKGFLRYVGPIHGKDGMFCGIELLEPNGKHDGTFQGVSYFIATPYHGIFA 80
Query: 100 RLTRLT 105
+ R+T
Sbjct: 81 PIFRVT 86
Score = 33.9 bits (76), Expect = 0.76, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 171 GVLRFKGTTQFAQGEWCGVELDEPIGKNDGNL 202
G LR+ G G +CG+EL EP GK+DG
Sbjct: 33 GFLRYVGPIHGKDGMFCGIELLEPNGKHDGTF 64
>sp|Q55CN0|TBCE_DICDI Tubulin-specific chaperone E OS=Dictyostelium discoideum GN=tbce
PE=3 SV=1
Length = 525
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 TDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPV-GKNDGQVGQARYFQCEP 93
+ F IG+RV G I + G+ G+W G+ DDP GK+ G V +YF+C
Sbjct: 10 VEYFYIGERVKGDDGSVGTIRYQGKVDGFEGNWYGIEWDDPKRGKHQGTVKGKQYFKCIN 69
Query: 94 K-HGIFSRLTRLTR 106
K G F + +L +
Sbjct: 70 KGSGSFMKYEKLIK 83
>sp|Q5RBD9|TBCE_PONAB Tubulin-specific chaperone E OS=Pongo abelii GN=TBCE PE=2 SV=1
Length = 527
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 28 SQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPV-GKNDGQVGQA 86
S LT D +IG RV V G + + F G G W GV D+P GK+DG
Sbjct: 2 SDTLTAD----VIGQRVEVNG-EHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGT 56
Query: 87 RYFQC-EPKHGIFSR 100
YFQC P G F R
Sbjct: 57 VYFQCRHPTGGSFIR 71
>sp|P11709|BIK1_YEAST Nuclear fusion protein BIK1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BIK1 PE=1 SV=1
Length = 440
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 52 GRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCE-PKHGIFSRLTRL 104
G++ ++G G +AGV L +GKNDG +YFQ E P+ G+F +L ++
Sbjct: 20 GQLKYVGPVDTKAGMFAGVDLLANIGKNDGSFMGKKYFQTEYPQSGLFIQLQKV 73
>sp|Q9H9D4|ZN408_HUMAN Zinc finger protein 408 OS=Homo sapiens GN=ZNF408 PE=1 SV=1
Length = 720
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 101 LTRLTRTPLDLPPP--ATPTPGARGDGFISPTGSARSLSFSTPGPGLSTPAKGGDIRLGD 158
L + +P D PP TP PGA+ GF PT LS S PGP S+P +G R G+
Sbjct: 305 LAKKLHSPSDQCPPRAKTPEPGAQQSGF--PT-----LSRSPPGPAGSSPKQGRRYRCGE 357
>sp|Q5U378|TBCE_DANRE Tubulin-specific chaperone E OS=Danio rerio GN=tbce PE=2 SV=2
Length = 521
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 40 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPV-GKNDGQVGQARYFQC-EPKHGI 97
+G RV G + G + ++G G W GV D P GK+DG RYF C P G
Sbjct: 7 VGRRVCCDGER-GTVRYVGPVPPTAGVWLGVEWDHPERGKHDGSHDGVRYFTCRHPTGGS 65
Query: 98 FSR 100
F R
Sbjct: 66 FVR 68
>sp|O67604|RISA_AQUAE Riboflavin synthase OS=Aquifex aeolicus (strain VF5) GN=ribE PE=3
SV=1
Length = 207
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 125 GFISPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTT 179
G + G ++L+ S+ G LS K D++LGD V S G+ V+ K +T
Sbjct: 4 GLVEDLGKVKNLTLSSKGAKLSVETKLEDVKLGDSV---SVNGACLTVVDIKSST 55
>sp|Q96QT6|PHF12_HUMAN PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=1 SV=2
Length = 1004
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 108 PLDLPPPAT---PTPGARGDGFISPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMS 164
PL PP AT P A GDG ++ T + R FS+P P G + +G + V S
Sbjct: 659 PLGSPPNATRVLTPPQAAGDGILATTANQR---FSSPAPSSDGKVSPGTLSIGSALTVPS 715
Query: 165 AQGSKTGVL 173
+ T ++
Sbjct: 716 FPANSTAMV 724
>sp|P53904|TBCB_YEAST Tubulin-specific chaperone B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ALF1 PE=1 SV=1
Length = 254
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 169 KTGVLRFKGTTQF-AQGEWCGVELDEPIGKNDGNLG 203
+ +LR+ G G WCGVE E GKNDG +
Sbjct: 173 REAILRYVGPLPLDVMGTWCGVEFPEAAGKNDGRIN 208
>sp|Q5U508|TBCE_XENLA Tubulin-specific chaperone E OS=Xenopus laevis GN=tbce PE=2 SV=1
Length = 522
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 54 IAFIGETKFAPGDWAGVVLDDPV-GKNDGQVGQARYFQC-EPKHGIFSRLTR 103
+ ++G PG W GV D+ + GK++G +YF C P G F RL +
Sbjct: 23 VRYVGNVPPTPGLWLGVEWDNHLRGKHNGTHEGTKYFTCSHPTGGSFIRLKK 74
>sp|C5C430|FGD_BEUC1 F420-dependent glucose-6-phosphate dehydrogenase OS=Beutenbergia
cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)
GN=fgd PE=3 SV=1
Length = 336
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 113 PPATPTPGARGDGFISPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGS 168
P AT G GDGFI +G R L T P L+ A D L D +++ + S
Sbjct: 175 PSATRLAGRVGDGFICTSGKGRELYTETLLPALAEGAAKSDRTLADLDLMIEMKVS 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,041,477
Number of Sequences: 539616
Number of extensions: 4139092
Number of successful extensions: 11726
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 11588
Number of HSP's gapped (non-prelim): 180
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)