Query psy18049
Match_columns 204
No_of_seqs 245 out of 1398
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 21:10:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cp2_A CLIP-115, KIAA0291; mic 100.0 3.6E-30 1.2E-34 193.2 10.3 90 22-111 3-92 (95)
2 1whh_A Clipr-59; microtubule b 100.0 5.6E-29 1.9E-33 188.8 11.6 76 34-109 22-97 (102)
3 3rdv_A CAP-Gly domain-containi 100.0 3.6E-29 1.2E-33 179.1 9.0 70 37-106 2-71 (72)
4 2cp3_A CLIP-115, KIAA0291; mic 100.0 7.2E-29 2.5E-33 182.4 10.8 74 35-108 5-78 (84)
5 1whj_A 1700024K14RIK, riken cD 100.0 4.7E-29 1.6E-33 189.3 9.8 77 35-111 22-98 (102)
6 2cp0_A Clipr-59 protein, clipr 100.0 2.7E-29 9.3E-34 188.4 8.3 77 35-111 14-90 (95)
7 1whk_A 1700024K14RIK, riken cD 100.0 8E-29 2.7E-33 184.6 9.1 79 32-110 7-86 (91)
8 2cow_A Kinesin-like protein KI 100.0 3.2E-28 1.1E-32 184.1 11.2 79 31-109 17-95 (100)
9 2e3h_A Restin; CAP-Gly, cytopl 100.0 3.3E-28 1.1E-32 180.9 10.4 73 37-109 1-73 (90)
10 2e3i_A Restin; CAP-Gly, cytopl 100.0 3.1E-28 1.1E-32 179.7 10.0 72 37-108 2-73 (86)
11 2coz_A CAP350, centrosome-asso 100.0 8.2E-28 2.8E-32 187.5 12.5 84 27-110 21-104 (122)
12 2coy_A Dynactin-1; microtubule 100.0 1.1E-27 3.6E-32 184.5 12.7 87 25-111 21-108 (112)
13 1ixd_A Cylindromatosis tumour- 100.0 9E-28 3.1E-32 182.9 12.1 80 29-108 9-91 (104)
14 4b6m_A Tubulin-specific chaper 99.9 5.8E-28 2E-32 177.3 10.3 74 35-108 3-78 (84)
15 1txq_A Dynactin 1; protein com 99.9 4.1E-28 1.4E-32 181.5 9.6 75 35-109 10-85 (93)
16 2cp6_A Restin; microtubule bin 99.9 6.8E-27 2.3E-31 191.3 17.1 75 34-108 35-109 (172)
17 2z0w_A CAP-Gly domain-containi 99.9 2E-28 6.9E-33 184.0 6.9 75 35-109 8-82 (96)
18 1whl_A Cylindromatosis tumor s 99.9 1.3E-27 4.3E-32 179.4 10.1 74 35-108 5-89 (95)
19 2cp5_A Restin; microtubule bin 99.9 2.4E-27 8.2E-32 188.7 11.5 78 31-108 58-135 (141)
20 1lpl_A Hypothetical 25.4 kDa p 99.9 8.6E-28 3E-32 180.3 7.4 74 35-108 9-86 (95)
21 1whg_A Tubulin specific chaper 99.9 1.7E-26 5.8E-31 178.2 9.1 74 35-108 30-107 (113)
22 1whm_A Cylindromatosis tumor s 99.9 2.5E-24 8.6E-29 159.9 10.5 73 34-106 6-84 (92)
23 1whm_A Cylindromatosis tumor s 99.7 5.5E-18 1.9E-22 125.9 7.5 54 150-203 6-61 (92)
24 3rdv_A CAP-Gly domain-containi 99.7 3.8E-18 1.3E-22 121.8 6.4 48 153-203 2-49 (72)
25 1whh_A Clipr-59; microtubule b 99.7 9.3E-18 3.2E-22 127.1 8.5 52 149-203 21-72 (102)
26 2cp2_A CLIP-115, KIAA0291; mic 99.7 4.3E-18 1.5E-22 127.5 6.5 53 148-203 13-65 (95)
27 2cp5_A Restin; microtubule bin 99.7 3.2E-17 1.1E-21 130.4 11.7 53 148-203 59-111 (141)
28 1whk_A 1700024K14RIK, riken cD 99.7 6.5E-18 2.2E-22 125.6 6.6 53 149-203 8-60 (91)
29 4b6m_A Tubulin-specific chaper 99.7 6.6E-18 2.3E-22 123.8 6.4 52 150-203 2-54 (84)
30 2cp3_A CLIP-115, KIAA0291; mic 99.7 8.6E-18 2.9E-22 123.3 7.0 50 151-203 5-54 (84)
31 2cow_A Kinesin-like protein KI 99.7 2.2E-17 7.6E-22 124.7 8.5 53 148-203 18-70 (100)
32 2coz_A CAP350, centrosome-asso 99.7 1.4E-17 4.9E-22 129.7 7.7 55 146-203 24-78 (122)
33 2e3i_A Restin; CAP-Gly, cytopl 99.7 1.1E-17 3.9E-22 123.2 6.5 48 153-203 2-49 (86)
34 2cp0_A Clipr-59 protein, clipr 99.7 6.6E-18 2.2E-22 126.5 4.9 50 151-203 14-63 (95)
35 1lpl_A Hypothetical 25.4 kDa p 99.7 1.5E-17 5.3E-22 124.5 6.9 53 151-203 9-62 (95)
36 1ixd_A Cylindromatosis tumour- 99.7 2.6E-17 8.9E-22 125.1 8.1 56 147-203 11-67 (104)
37 2coy_A Dynactin-1; microtubule 99.7 5.1E-17 1.7E-21 125.0 9.8 53 149-203 29-81 (112)
38 1txq_A Dynactin 1; protein com 99.7 1.4E-17 5E-22 124.2 6.5 53 149-203 8-60 (93)
39 2e3h_A Restin; CAP-Gly, cytopl 99.7 1.7E-17 5.9E-22 123.1 6.4 48 153-203 1-48 (90)
40 1whl_A Cylindromatosis tumor s 99.7 3.9E-17 1.3E-21 122.3 7.2 53 151-203 5-65 (95)
41 2z0w_A CAP-Gly domain-containi 99.7 1.2E-17 4E-22 125.4 3.9 50 151-203 8-57 (96)
42 1whj_A 1700024K14RIK, riken cD 99.7 3.5E-17 1.2E-21 124.0 6.4 50 151-203 22-71 (102)
43 1whg_A Tubulin specific chaper 99.7 5.6E-17 1.9E-21 124.9 6.8 54 150-203 29-83 (113)
44 2cp6_A Restin; microtubule bin 99.7 2.1E-16 7.3E-21 129.2 10.2 52 149-203 34-85 (172)
45 2kss_A Carotenogenesis protein 38.6 6.7 0.00023 28.4 0.0 42 148-195 32-75 (106)
46 1at0_A 17-hedgehog; developmen 30.9 59 0.002 24.5 4.4 56 36-102 19-79 (145)
47 2e6z_A Transcription elongatio 29.6 53 0.0018 21.3 3.4 24 34-57 4-31 (59)
48 3a8g_B NitrIle hydratase subun 28.5 70 0.0024 26.4 4.7 33 149-181 118-163 (212)
49 3udc_A Small-conductance mecha 27.6 45 0.0015 28.0 3.4 24 36-60 127-150 (285)
50 3udc_A Small-conductance mecha 27.0 53 0.0018 27.5 3.8 25 151-179 126-150 (285)
51 2vv5_A MSCS, small-conductance 23.8 49 0.0017 27.8 3.0 24 36-60 128-151 (286)
52 3lnn_A Membrane fusion protein 21.8 3.5E+02 0.012 22.5 8.3 75 32-107 216-298 (359)
53 3pie_A 5'->3' exoribonuclease 21.7 1.2E+02 0.0043 31.0 5.8 65 35-107 1063-1135(1155)
54 2vv5_A MSCS, small-conductance 21.5 58 0.002 27.3 3.0 25 151-179 127-151 (286)
No 1
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.96 E-value=3.6e-30 Score=193.19 Aligned_cols=90 Identities=51% Similarity=0.974 Sum_probs=80.8
Q ss_pred cccCCCcccccCCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeec
Q psy18049 22 VSISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRL 101 (204)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~ 101 (204)
+.++.++......+..|+|||||.|.+.++|+|||+|++++.+|+|+|||||+|.|||||+++|+|||+|+++||+||++
T Consensus 3 ~~~~~~s~~~~~~~~~~~vG~rV~V~g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~ 82 (95)
T 2cp2_A 3 SGSSGAAEVGDDFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRP 82 (95)
T ss_dssp SCCCCCSCCCBSSCCSCCTTCEEEGGGSCEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECG
T ss_pred ccccccchhhhhhhhcCcCCCEEEECCceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcH
Confidence 34555555666677789999999999878999999999999999999999999999999999999999999999999999
Q ss_pred CcceecCCCC
Q psy18049 102 TRLTRTPLDL 111 (204)
Q Consensus 102 ~kv~~~~~~~ 111 (204)
++|.+.|..+
T Consensus 83 ~kv~~~p~~~ 92 (95)
T 2cp2_A 83 SKLTRQPSGP 92 (95)
T ss_dssp GGCCSSCCSS
T ss_pred HHCccCCCCC
Confidence 9999887543
No 2
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.96 E-value=5.6e-29 Score=188.82 Aligned_cols=76 Identities=45% Similarity=0.892 Sum_probs=71.9
Q ss_pred CCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecCC
Q psy18049 34 DTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTPL 109 (204)
Q Consensus 34 ~~~~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~~ 109 (204)
+...|+|||||+|.+.++|+|||+|++++.+|+|+|||||+|.|||||+++|+|||+|+++||+||++++|++..+
T Consensus 22 ~~~~~~VG~RV~V~g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d 97 (102)
T 1whh_A 22 EGAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGS 97 (102)
T ss_dssp SCCSSCTTSEEEETTTEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCS
T ss_pred ccccCcCCCEEEECCCcEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCC
Confidence 4567999999999988899999999999999999999999999999999999999999999999999999998643
No 3
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.96 E-value=3.6e-29 Score=179.10 Aligned_cols=70 Identities=63% Similarity=1.237 Sum_probs=67.8
Q ss_pred CcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCccee
Q psy18049 37 SFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTR 106 (204)
Q Consensus 37 ~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~ 106 (204)
+|++|+||+|.+...|+|||+|++++++|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|++
T Consensus 2 ~~~vG~rv~v~g~~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvsr 71 (72)
T 3rdv_A 2 DFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 71 (72)
T ss_dssp CCCTTCEEEETTTEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEEC
T ss_pred CcccCCEEEECCCCEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHccc
Confidence 6899999999988899999999999999999999999999999999999999999999999999999975
No 4
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=7.2e-29 Score=182.36 Aligned_cols=74 Identities=51% Similarity=1.061 Sum_probs=70.8
Q ss_pred CCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecC
Q psy18049 35 TDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTP 108 (204)
Q Consensus 35 ~~~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~ 108 (204)
...|+|||||+|.+...|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+++||+||++++|.+..
T Consensus 5 ~~~~~vG~rv~v~g~~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~~ 78 (84)
T 2cp3_A 5 SSGLRLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIG 78 (84)
T ss_dssp SCSCCTTCEEEETTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEECC
T ss_pred ccccccCCEEEECCCCeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEcc
Confidence 45799999999998889999999999999999999999999999999999999999999999999999999875
No 5
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.96 E-value=4.7e-29 Score=189.26 Aligned_cols=77 Identities=44% Similarity=0.909 Sum_probs=72.7
Q ss_pred CCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecCCCC
Q psy18049 35 TDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTPLDL 111 (204)
Q Consensus 35 ~~~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~~~~ 111 (204)
..+|+|||||+|.+.+.|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+++||+||++++|.+.++..
T Consensus 22 ~~~~~vG~RV~V~g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~ 98 (102)
T 1whj_A 22 SLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSG 98 (102)
T ss_dssp HHTCCTTCEEEETTTEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCC
T ss_pred hhcCcCCCEEEECCCCEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCC
Confidence 34799999999998889999999999999999999999999999999999999999999999999999999987554
No 6
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=2.7e-29 Score=188.42 Aligned_cols=77 Identities=44% Similarity=0.913 Sum_probs=72.5
Q ss_pred CCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecCCCC
Q psy18049 35 TDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTPLDL 111 (204)
Q Consensus 35 ~~~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~~~~ 111 (204)
..+|+|||||+|.+.+.|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+++||+||++++|.+.+..+
T Consensus 14 ~~~~~vG~RV~V~g~~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~~~~~ 90 (95)
T 2cp0_A 14 ALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKAVDAS 90 (95)
T ss_dssp HHTCCTTCEEEETTTEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEECSCCC
T ss_pred ccCCCCCCEEEECCCCeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecCCCCC
Confidence 34799999999998889999999999999999999999999999999999999999999999999999999986543
No 7
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.95 E-value=8e-29 Score=184.57 Aligned_cols=79 Identities=35% Similarity=0.695 Sum_probs=72.9
Q ss_pred cCCCCCcccccEEEECC-CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecCCC
Q psy18049 32 TEDTDSFIIGDRVYVGG-TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTPLD 110 (204)
Q Consensus 32 ~~~~~~l~vG~rV~v~g-~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~~~ 110 (204)
.+....|+|||||+|.+ .++|+|||+|++++.+|+|+|||||+|.|||||+++|+|||+|+++||+||++++|...+..
T Consensus 7 ~~~~~~~~vG~rV~V~~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~ 86 (91)
T 1whk_A 7 GEGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGIS 86 (91)
T ss_dssp SCCCCCCCSSCEEEESSSCCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECCCCC
T ss_pred CCCCccccCCCEEEECCCCeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEcCCC
Confidence 34566899999999985 68999999999999999999999999999999999999999999999999999999987544
No 8
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=3.2e-28 Score=184.06 Aligned_cols=79 Identities=38% Similarity=0.756 Sum_probs=73.3
Q ss_pred ccCCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecCC
Q psy18049 31 LTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTPL 109 (204)
Q Consensus 31 ~~~~~~~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~~ 109 (204)
.......|+|||||+|.+.++|+|||||++++.+|+|+|||||+|.|||||+++|+|||+|+++||+||++++|.+.+.
T Consensus 17 ~~~~~~~l~vG~rV~V~g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~ 95 (100)
T 2cow_A 17 ADEVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATS 95 (100)
T ss_dssp CCCCCSSCCTTCEEECSSSCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCC
T ss_pred cccCCccccCCCEEEECCCcEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCC
Confidence 4445567999999999887899999999999999999999999999999999999999999999999999999998753
No 9
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.95 E-value=3.3e-28 Score=180.92 Aligned_cols=73 Identities=55% Similarity=1.088 Sum_probs=69.6
Q ss_pred CcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecCC
Q psy18049 37 SFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTPL 109 (204)
Q Consensus 37 ~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~~ 109 (204)
+|+|||||.|.+...|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+++||+||++++|.....
T Consensus 1 ~l~vG~rV~V~g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~ 73 (90)
T 2e3h_A 1 ELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGF 73 (90)
T ss_dssp CCCTTCEEEETTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEETTS
T ss_pred CCcCCCEEEECCCCEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEECCC
Confidence 4899999999988899999999999999999999999999999999999999999999999999999998743
No 10
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=3.1e-28 Score=179.70 Aligned_cols=72 Identities=61% Similarity=1.195 Sum_probs=69.4
Q ss_pred CcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecC
Q psy18049 37 SFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTP 108 (204)
Q Consensus 37 ~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~ 108 (204)
+|+|||||.|.+...|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+++||+||++++|...+
T Consensus 2 ~~~vG~rv~v~g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~ 73 (86)
T 2e3i_A 2 DFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKV 73 (86)
T ss_dssp CCCTTCEEEETTTEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSC
T ss_pred CccCCCEEEECCCcEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHccccc
Confidence 689999999998789999999999999999999999999999999999999999999999999999998864
No 11
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=8.2e-28 Score=187.53 Aligned_cols=84 Identities=42% Similarity=0.786 Sum_probs=76.6
Q ss_pred CcccccCCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCccee
Q psy18049 27 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTR 106 (204)
Q Consensus 27 ~~~~~~~~~~~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~ 106 (204)
.+.++......|+||+||.|.+.++|+|||||++++.+|+|+|||||+|.|||||+++|+|||+|+++||+||++++|..
T Consensus 21 ~s~~~~~~~~~l~VG~RV~V~g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~~ 100 (122)
T 2coz_A 21 ASVPTADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISH 100 (122)
T ss_dssp SCCCCCCSCSSCCTTEEEEETTTEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEEC
T ss_pred cccccccccccCcCCCEEEECCCcEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCcc
Confidence 44455566778999999999988899999999999999999999999999999999999999999999999999999997
Q ss_pred cCCC
Q psy18049 107 TPLD 110 (204)
Q Consensus 107 ~~~~ 110 (204)
.+..
T Consensus 101 ~pe~ 104 (122)
T 2coz_A 101 IPEN 104 (122)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 6543
No 12
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=1.1e-27 Score=184.54 Aligned_cols=87 Identities=38% Similarity=0.682 Sum_probs=75.7
Q ss_pred CCCcccccCCCCCcccccEEEECC-CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCc
Q psy18049 25 SDSSQVLTEDTDSFIIGDRVYVGG-TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTR 103 (204)
Q Consensus 25 ~~~~~~~~~~~~~l~vG~rV~v~g-~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~k 103 (204)
+.|..........|+|||||.|.+ .++|+|||||++++.+|+|+|||||+|.|||||+++|+|||+|+++||+||++++
T Consensus 21 ~~s~~~~~~~~~~l~VG~RV~V~~~g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~ 100 (112)
T 2coy_A 21 SGSRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQ 100 (112)
T ss_dssp SCCSSSCCCSCCCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGG
T ss_pred CccccccccccccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHH
Confidence 333333444556899999999975 4799999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCC
Q psy18049 104 LTRTPLDL 111 (204)
Q Consensus 104 v~~~~~~~ 111 (204)
|+......
T Consensus 101 v~~~~~~~ 108 (112)
T 2coy_A 101 IQVFEDSG 108 (112)
T ss_dssp EEECCCCC
T ss_pred eEEcCCCC
Confidence 99875443
No 13
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=9e-28 Score=182.86 Aligned_cols=80 Identities=25% Similarity=0.391 Sum_probs=72.7
Q ss_pred ccccCCCCCcccccEEEECC--CceEEEEEEeecCCCCCcEEEEEE-cCCCCCCCceeCCEEeeEcCCCCeeeeecCcce
Q psy18049 29 QVLTEDTDSFIIGDRVYVGG--TKSGRIAFIGETKFAPGDWAGVVL-DDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLT 105 (204)
Q Consensus 29 ~~~~~~~~~l~vG~rV~v~g--~~~G~vryiG~~~~~~g~w~GVEL-d~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~ 105 (204)
.........|+|||||+|.+ .++|+|||||++++.+|+|+|||| |+|.|||||+++|+|||+|+++||+||++++|.
T Consensus 9 ~~~~~~~~~l~VG~RV~V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~ 88 (104)
T 1ixd_A 9 AMPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCR 88 (104)
T ss_dssp CCTTTSSSCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEE
T ss_pred CCCCCCCcccccCCEEEECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHce
Confidence 33445667899999999985 589999999999999999999999 889999999999999999999999999999998
Q ss_pred ecC
Q psy18049 106 RTP 108 (204)
Q Consensus 106 ~~~ 108 (204)
...
T Consensus 89 ~~~ 91 (104)
T 1ixd_A 89 PDS 91 (104)
T ss_dssp ECC
T ss_pred ecc
Confidence 753
No 14
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.95 E-value=5.8e-28 Score=177.28 Aligned_cols=74 Identities=38% Similarity=0.784 Sum_probs=67.3
Q ss_pred CCCcccccEEEEC-CCceEEEEEEeecC-CCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecC
Q psy18049 35 TDSFIIGDRVYVG-GTKSGRIAFIGETK-FAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTP 108 (204)
Q Consensus 35 ~~~l~vG~rV~v~-g~~~G~vryiG~~~-~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~ 108 (204)
...|+|||||+|. +.++|+|||+|+++ +++|+|+|||||+|.|||||+++|+|||+|+++||+||++++|+...
T Consensus 3 m~~i~vG~Rv~v~~~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~gd 78 (84)
T 4b6m_A 3 METIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVGD 78 (84)
T ss_dssp --CCCTTCEEEETTTTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEECC
T ss_pred ccCcccCCEEEEcCCCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEECC
Confidence 3579999999996 46899999999975 68999999999999999999999999999999999999999998863
No 15
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.95 E-value=4.1e-28 Score=181.46 Aligned_cols=75 Identities=41% Similarity=0.802 Sum_probs=69.4
Q ss_pred CCCcccccEEEECC-CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecCC
Q psy18049 35 TDSFIIGDRVYVGG-TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTPL 109 (204)
Q Consensus 35 ~~~l~vG~rV~v~g-~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~~ 109 (204)
...|+|||||.|.+ .++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+++||+||++++|+...+
T Consensus 10 ~~~~~vG~rv~v~~~~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~ 85 (93)
T 1txq_A 10 ARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFED 85 (93)
T ss_dssp -CCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEECC-
T ss_pred cccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEccC
Confidence 45799999999975 4799999999999999999999999999999999999999999999999999999998653
No 16
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=6.8e-27 Score=191.28 Aligned_cols=75 Identities=53% Similarity=1.049 Sum_probs=71.2
Q ss_pred CCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecC
Q psy18049 34 DTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTP 108 (204)
Q Consensus 34 ~~~~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~ 108 (204)
...+|+|||||+|.+.++|+|||||++++.+|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|....
T Consensus 35 ~~~~l~VG~RV~V~g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~~d 109 (172)
T 2cp6_A 35 GERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIG 109 (172)
T ss_dssp CSSCCCSSCEEEETTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECC
T ss_pred CCccCccCCEEEECCCceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEECC
Confidence 345799999999998889999999999999999999999999999999999999999999999999999999864
No 17
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=184.02 Aligned_cols=75 Identities=45% Similarity=0.902 Sum_probs=69.3
Q ss_pred CCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecCC
Q psy18049 35 TDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTPL 109 (204)
Q Consensus 35 ~~~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~~ 109 (204)
...|+|||||.|.+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.....
T Consensus 8 ~~~~~vG~rV~V~g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~~~ 82 (96)
T 2z0w_A 8 EGELRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTD 82 (96)
T ss_dssp ---CCTTCCCCCCCCCCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCTTC
T ss_pred cccCCCCCEEEECCCcEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceeccc
Confidence 457999999999988899999999999999999999999999999999999999999999999999999988643
No 18
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=1.3e-27 Score=179.40 Aligned_cols=74 Identities=27% Similarity=0.401 Sum_probs=68.7
Q ss_pred CCCcccccEEEEC--C---CceEEEEEEeecC---CCCCcEEEEEEcCC---CCCCCceeCCEEeeEcCCCCeeeeecCc
Q psy18049 35 TDSFIIGDRVYVG--G---TKSGRIAFIGETK---FAPGDWAGVVLDDP---VGKNDGQVGQARYFQCEPKHGIFSRLTR 103 (204)
Q Consensus 35 ~~~l~vG~rV~v~--g---~~~G~vryiG~~~---~~~g~w~GVELd~p---~Gk~dGs~~G~rYF~C~~~~GiFv~~~k 103 (204)
+..|+|||||+|. + .++|+|||||+++ +.+|+|+|||||+| .|||||+++|+|||+|+++||+||++++
T Consensus 5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~~ 84 (95)
T 1whl_A 5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDK 84 (95)
T ss_dssp CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGGG
T ss_pred cccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHHH
Confidence 4579999999994 3 4799999999998 79999999999999 8999999999999999999999999999
Q ss_pred ceecC
Q psy18049 104 LTRTP 108 (204)
Q Consensus 104 v~~~~ 108 (204)
|+...
T Consensus 85 v~~~~ 89 (95)
T 1whl_A 85 LELIE 89 (95)
T ss_dssp EEECC
T ss_pred eEEcC
Confidence 99864
No 19
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=2.4e-27 Score=188.72 Aligned_cols=78 Identities=59% Similarity=1.112 Sum_probs=72.9
Q ss_pred ccCCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecC
Q psy18049 31 LTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTP 108 (204)
Q Consensus 31 ~~~~~~~l~vG~rV~v~g~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~ 108 (204)
..+....|+|||||+|.+.++|+|||||++++.+|.|+|||||+|.|||||+++|+|||+|+++||+||++++|.+..
T Consensus 58 ~~~~~~~l~VG~RV~V~G~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~~ 135 (141)
T 2cp5_A 58 QEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKV 135 (141)
T ss_dssp CCCCCCCCCTTCEEEETTSCEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESSC
T ss_pred hhhhhhcCcCCCEEEECCCcEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeecc
Confidence 334456899999999998889999999999999999999999999999999999999999999999999999999865
No 20
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.94 E-value=8.6e-28 Score=180.32 Aligned_cols=74 Identities=42% Similarity=0.850 Sum_probs=69.3
Q ss_pred CCCcccccEEEEC--C--CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecC
Q psy18049 35 TDSFIIGDRVYVG--G--TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTP 108 (204)
Q Consensus 35 ~~~l~vG~rV~v~--g--~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~ 108 (204)
...|+||+||.|. + .++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+++||+||++++|....
T Consensus 9 ~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~~gd 86 (95)
T 1lpl_A 9 AKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKVGD 86 (95)
T ss_dssp HHTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEESC
T ss_pred hhcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHceECC
Confidence 3469999999997 4 589999999999999999999999999999999999999999999999999999998763
No 21
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.93 E-value=1.7e-26 Score=178.16 Aligned_cols=74 Identities=38% Similarity=0.788 Sum_probs=69.1
Q ss_pred CCCcccccEEEEC--C--CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecCcceecC
Q psy18049 35 TDSFIIGDRVYVG--G--TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTP 108 (204)
Q Consensus 35 ~~~l~vG~rV~v~--g--~~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~~~ 108 (204)
...|+|||||.|. + .++|+|||||++++.+|+|+|||||+|.|||||+++|+|||+|+++||+||++++|....
T Consensus 30 ~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~gd 107 (113)
T 1whg_A 30 ASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGD 107 (113)
T ss_dssp HTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGGEEEEE
T ss_pred hhcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEeeeCCCeEEEECHHHeEECC
Confidence 4579999999996 4 589999999999999999999999999999999999999999999999999999998753
No 22
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.91 E-value=2.5e-24 Score=159.94 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=66.0
Q ss_pred CCCCcccccEEEEC-C--CceEEEEEEeecCCC--CCcEEEEEEcCCCCCCCceeCCEEee-EcCCCCeeeeecCccee
Q psy18049 34 DTDSFIIGDRVYVG-G--TKSGRIAFIGETKFA--PGDWAGVVLDDPVGKNDGQVGQARYF-QCEPKHGIFSRLTRLTR 106 (204)
Q Consensus 34 ~~~~l~vG~rV~v~-g--~~~G~vryiG~~~~~--~g~w~GVELd~p~Gk~dGs~~G~rYF-~C~~~~GiFv~~~kv~~ 106 (204)
+...|+||+||+|. + .++|+|||+|++++. .|.|+|||||+|.|||||+|+|+||| .|+++||+||++.++..
T Consensus 6 ~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~~~ 84 (92)
T 1whm_A 6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIP 84 (92)
T ss_dssp CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGEEE
T ss_pred cccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccCcc
Confidence 34579999999996 2 389999999999864 69999999999999999999999999 99999999999999954
No 23
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.73 E-value=5.5e-18 Score=125.87 Aligned_cols=54 Identities=26% Similarity=0.484 Sum_probs=47.5
Q ss_pred CCCCCCcCCEEEEecCCCCeeeeEEEeccCCCC--CceEEEEEeCCCCcCCCcccC
Q psy18049 150 KGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFA--QGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 150 ~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~--~g~w~GVElD~p~GkndGsv~ 203 (204)
+...|+||+||+|...+..++|||||+|++++. +|+|+|||||||.|||||+|+
T Consensus 6 ~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~ 61 (92)
T 1whm_A 6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFD 61 (92)
T ss_dssp CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEET
T ss_pred cccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeEC
Confidence 456799999999986434699999999999864 699999999999999999986
No 24
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.73 E-value=3.8e-18 Score=121.82 Aligned_cols=48 Identities=58% Similarity=1.106 Sum_probs=44.9
Q ss_pred CCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 153 ~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
+|+||+||.|. +.++|+|||+|+++|++|.|+|||||+|.|||||+++
T Consensus 2 ~~~vG~rv~v~---g~~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~ 49 (72)
T 3rdv_A 2 DFRVGERVWVN---GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 49 (72)
T ss_dssp CCCTTCEEEET---TTEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEET
T ss_pred CcccCCEEEEC---CCCEEEEEEeeeCCCCCceEEEEEECCCCCccCCEEC
Confidence 68999999995 4679999999999999999999999999999999986
No 25
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.73 E-value=9.3e-18 Score=127.13 Aligned_cols=52 Identities=48% Similarity=0.960 Sum_probs=47.5
Q ss_pred CCCCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 149 AKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 149 ~~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
.+...|+||+||.|. +.++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 21 ~~~~~~~VG~RV~V~---g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~ 72 (102)
T 1whh_A 21 REGAKAEVGDQVLVA---GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVF 72 (102)
T ss_dssp SSCCSSCTTSEEEET---TTEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEET
T ss_pred cccccCcCCCEEEEC---CCcEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEEC
Confidence 345789999999994 4689999999999999999999999999999999986
No 26
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.73 E-value=4.3e-18 Score=127.49 Aligned_cols=53 Identities=53% Similarity=0.959 Sum_probs=48.2
Q ss_pred CCCCCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 148 PAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 148 ~~~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
...+..|+||+||.|. +.++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 13 ~~~~~~~~vG~rV~V~---g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~ 65 (95)
T 2cp2_A 13 DDFLGDFVVGERVWVN---GVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVG 65 (95)
T ss_dssp BSSCCSCCTTCEEEGG---GSCEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEET
T ss_pred hhhhhcCcCCCEEEEC---CceEEEEEEecccCCCCCEEEEEEecCCCCccCCEEC
Confidence 3556789999999996 3689999999999999999999999999999999986
No 27
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.72 E-value=3.2e-17 Score=130.42 Aligned_cols=53 Identities=53% Similarity=0.958 Sum_probs=48.2
Q ss_pred CCCCCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 148 PAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 148 ~~~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
......|+||+||.|. +.++|+|||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 59 ~~~~~~l~VG~RV~V~---G~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~ 111 (141)
T 2cp5_A 59 EEFVDDFRVGERVWVN---GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 111 (141)
T ss_dssp CCCCCCCCTTCEEEET---TSCEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEET
T ss_pred hhhhhcCcCCCEEEEC---CCcEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEEC
Confidence 3456789999999995 4689999999999999999999999999999999986
No 28
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.72 E-value=6.5e-18 Score=125.62 Aligned_cols=53 Identities=36% Similarity=0.689 Sum_probs=47.8
Q ss_pred CCCCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 149 AKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 149 ~~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
.....|+||+||.|.. ..++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 8 ~~~~~~~vG~rV~V~~--~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~ 60 (91)
T 1whk_A 8 EGTVKLHEGSQVLLTS--SNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVG 60 (91)
T ss_dssp CCCCCCCSSCEEEESS--SCCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEET
T ss_pred CCCccccCCCEEEECC--CCeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEEC
Confidence 4456799999999963 2689999999999999999999999999999999986
No 29
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.72 E-value=6.6e-18 Score=123.79 Aligned_cols=52 Identities=40% Similarity=0.827 Sum_probs=44.8
Q ss_pred CCCCCCcCCEEEEecCCCCeeeeEEEeccCC-CCCceEEEEEeCCCCcCCCcccC
Q psy18049 150 KGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQ-FAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 150 ~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~-~~~g~w~GVElD~p~GkndGsv~ 203 (204)
+...|+||+||+|.. +.++|||||+|+++ |++|+|+|||||+|.|||||+|+
T Consensus 2 ~m~~i~vG~Rv~v~~--~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~ 54 (84)
T 4b6m_A 2 HMETIHVGDRCLCRP--GDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVK 54 (84)
T ss_dssp ---CCCTTCEEEETT--TTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEET
T ss_pred CccCcccCCEEEEcC--CCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEEC
Confidence 356899999999963 46899999999974 78999999999999999999986
No 30
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.72 E-value=8.6e-18 Score=123.28 Aligned_cols=50 Identities=66% Similarity=1.252 Sum_probs=46.3
Q ss_pred CCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 151 GGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 151 ~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
...|+||+||.|. +.++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 5 ~~~~~vG~rv~v~---g~~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~ 54 (84)
T 2cp3_A 5 SSGLRLGDRVLVG---GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVA 54 (84)
T ss_dssp SCSCCTTCEEEET---TTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEET
T ss_pred ccccccCCEEEEC---CCCeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEEC
Confidence 4579999999994 4689999999999999999999999999999999986
No 31
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.71 E-value=2.2e-17 Score=124.66 Aligned_cols=53 Identities=47% Similarity=0.801 Sum_probs=47.6
Q ss_pred CCCCCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 148 PAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 148 ~~~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
+.....|+||+||.|. +.++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 18 ~~~~~~l~vG~rV~V~---g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~ 70 (100)
T 2cow_A 18 DEVPEWLREGEFVTVG---AHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIG 70 (100)
T ss_dssp CCCCSSCCTTCEEECS---SSCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEET
T ss_pred ccCCccccCCCEEEEC---CCcEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEEC
Confidence 3445579999999994 3689999999999999999999999999999999986
No 32
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.71 E-value=1.4e-17 Score=129.70 Aligned_cols=55 Identities=47% Similarity=0.857 Sum_probs=49.2
Q ss_pred CCCCCCCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 146 STPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 146 s~~~~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
........|+||+||.|. +.++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 24 ~~~~~~~~l~VG~RV~V~---g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~ 78 (122)
T 2coz_A 24 PTADELFDFHIGDRVLIG---NVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYD 78 (122)
T ss_dssp CCCCSCSSCCTTEEEEET---TTEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEET
T ss_pred ccccccccCcCCCEEEEC---CCcEEEEEEecccCCCCCeEEEEEeCCCCCccCCEEC
Confidence 334556789999999995 3689999999999999999999999999999999986
No 33
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.71 E-value=1.1e-17 Score=123.16 Aligned_cols=48 Identities=58% Similarity=1.106 Sum_probs=45.0
Q ss_pred CCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 153 ~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
+|+||+||.|. +.++|+|||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 2 ~~~vG~rv~v~---g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~ 49 (86)
T 2e3i_A 2 DFRVGERVWVN---GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 49 (86)
T ss_dssp CCCTTCEEEET---TTEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEET
T ss_pred CccCCCEEEEC---CCcEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEEC
Confidence 58999999994 4689999999999999999999999999999999986
No 34
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.70 E-value=6.6e-18 Score=126.51 Aligned_cols=50 Identities=66% Similarity=1.139 Sum_probs=46.2
Q ss_pred CCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 151 GGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 151 ~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
...|+||+||.|. +.++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 14 ~~~~~vG~RV~V~---g~~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~ 63 (95)
T 2cp0_A 14 ALGLRLGDRVLLD---GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVG 63 (95)
T ss_dssp HHTCCTTCEEEET---TTEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEET
T ss_pred ccCCCCCCEEEEC---CCCeEEEEEecccCCCCCcEEEEEecCCCCcCCCEEC
Confidence 3569999999994 4689999999999999999999999999999999986
No 35
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.70 E-value=1.5e-17 Score=124.51 Aligned_cols=53 Identities=42% Similarity=0.814 Sum_probs=47.1
Q ss_pred CCCCCcCCEEEEec-CCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 151 GGDIRLGDRVIVMS-AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 151 ~~~~~vG~RV~v~~-~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
...|+||+||.|.. .+..++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 9 ~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~ 62 (95)
T 1lpl_A 9 AKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVA 62 (95)
T ss_dssp HHTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEET
T ss_pred hhcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEEC
Confidence 35699999999963 222699999999999999999999999999999999986
No 36
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.70 E-value=2.6e-17 Score=125.12 Aligned_cols=56 Identities=27% Similarity=0.396 Sum_probs=49.3
Q ss_pred CCCCCCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEe-CCCCcCCCcccC
Q psy18049 147 TPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVEL-DEPIGKNDGNLG 203 (204)
Q Consensus 147 ~~~~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVEl-D~p~GkndGsv~ 203 (204)
.+.....|+||+||.|.. .+.++|||||+|+++|++|.|+|||| |+|.|||||+|+
T Consensus 11 ~~~~~~~l~VG~RV~V~~-~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~ 67 (104)
T 1ixd_A 11 PPGNSHGLEVGSLAEVKE-NPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFR 67 (104)
T ss_dssp TTTSSSCCCTTSEEEECS-SSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEET
T ss_pred CCCCCcccccCCEEEECc-CCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEEC
Confidence 344567899999999963 23689999999999999999999999 899999999986
No 37
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.70 E-value=5.1e-17 Score=124.96 Aligned_cols=53 Identities=43% Similarity=0.779 Sum_probs=47.7
Q ss_pred CCCCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 149 AKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 149 ~~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
.....|+||+||.|.. ..++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 29 ~~~~~l~VG~RV~V~~--~g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~ 81 (112)
T 2coy_A 29 ASARPLRVGSRVEVIG--KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQ 81 (112)
T ss_dssp CSCCCCCTTCEEEETT--TCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEET
T ss_pred cccccCCCCCEEEECC--CCeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEEC
Confidence 4456899999999953 2589999999999999999999999999999999986
No 38
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.70 E-value=1.4e-17 Score=124.21 Aligned_cols=53 Identities=43% Similarity=0.779 Sum_probs=46.2
Q ss_pred CCCCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 149 AKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 149 ~~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
.....|+||+||.|.. ..++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 8 ~~~~~~~vG~rv~v~~--~~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~ 60 (93)
T 1txq_A 8 ASARPLRVGSRVEVIG--KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQ 60 (93)
T ss_dssp ---CCCCTTCEEEETT--TCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEET
T ss_pred cccccCCCCCEEEECC--CCeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEEC
Confidence 3456799999999953 2589999999999999999999999999999999986
No 39
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.70 E-value=1.7e-17 Score=123.10 Aligned_cols=48 Identities=65% Similarity=1.292 Sum_probs=44.8
Q ss_pred CCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 153 ~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
+|+||+||.|. +.++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 1 ~l~vG~rV~V~---g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~ 48 (90)
T 2e3h_A 1 ELKIGDRVLVG---GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVA 48 (90)
T ss_dssp CCCTTCEEEET---TTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEET
T ss_pred CCcCCCEEEEC---CCCEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEEC
Confidence 48999999994 4689999999999999999999999999999999986
No 40
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.69 E-value=3.9e-17 Score=122.29 Aligned_cols=53 Identities=36% Similarity=0.473 Sum_probs=47.1
Q ss_pred CCCCCcCCEEEEecCCC--CeeeeEEEeccCC---CCCceEEEEEeCCC---CcCCCcccC
Q psy18049 151 GGDIRLGDRVIVMSAQG--SKTGVLRFKGTTQ---FAQGEWCGVELDEP---IGKNDGNLG 203 (204)
Q Consensus 151 ~~~~~vG~RV~v~~~~~--~~~GtVryiG~~~---~~~g~w~GVElD~p---~GkndGsv~ 203 (204)
...|+||+||.|....+ .++|||||+|+++ |++|.|+|||||+| .|||||+|+
T Consensus 5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~ 65 (95)
T 1whl_A 5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQ 65 (95)
T ss_dssp CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEET
T ss_pred cccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEEC
Confidence 46799999999964322 5899999999998 89999999999999 899999986
No 41
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.2e-17 Score=125.40 Aligned_cols=50 Identities=56% Similarity=1.139 Sum_probs=44.5
Q ss_pred CCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 151 GGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 151 ~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
...|+||+||.|. +.++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 8 ~~~~~vG~rV~V~---g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~ 57 (96)
T 2z0w_A 8 EGELRLGERVLVV---GQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVG 57 (96)
T ss_dssp ---CCTTCCCCCC---CCCCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEET
T ss_pred cccCCCCCEEEEC---CCcEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEEC
Confidence 4579999999995 4689999999999999999999999999999999986
No 42
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.68 E-value=3.5e-17 Score=123.99 Aligned_cols=50 Identities=58% Similarity=1.119 Sum_probs=46.3
Q ss_pred CCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 151 GGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 151 ~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
...|+||+||.|. +.++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 22 ~~~~~vG~RV~V~---g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~ 71 (102)
T 1whj_A 22 SLGLKLGDRVVIA---GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVG 71 (102)
T ss_dssp HHTCCTTCEEEET---TTEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEET
T ss_pred hhcCcCCCEEEEC---CCCEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEEC
Confidence 4579999999994 4689999999999999999999999999999999986
No 43
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.67 E-value=5.6e-17 Score=124.92 Aligned_cols=54 Identities=37% Similarity=0.751 Sum_probs=47.8
Q ss_pred CCCCCCcCCEEEEec-CCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 150 KGGDIRLGDRVIVMS-AQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 150 ~~~~~~vG~RV~v~~-~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
....|+||+||.|.. .+..++|||||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 29 ~~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~ 83 (113)
T 1whg_A 29 QASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVN 83 (113)
T ss_dssp HHTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEET
T ss_pred hhhcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEEC
Confidence 345799999999963 223699999999999999999999999999999999986
No 44
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.67 E-value=2.1e-16 Score=129.20 Aligned_cols=52 Identities=60% Similarity=1.172 Sum_probs=47.7
Q ss_pred CCCCCCCcCCEEEEecCCCCeeeeEEEeccCCCCCceEEEEEeCCCCcCCCcccC
Q psy18049 149 AKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDGNLG 203 (204)
Q Consensus 149 ~~~~~~~vG~RV~v~~~~~~~~GtVryiG~~~~~~g~w~GVElD~p~GkndGsv~ 203 (204)
....+|+||+||.|. +.++|+|||+|+++|++|.|+|||||+|.|||||+|+
T Consensus 34 ~~~~~l~VG~RV~V~---g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~ 85 (172)
T 2cp6_A 34 KGERELKIGDRVLVG---GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVA 85 (172)
T ss_dssp CCSSCCCSSCEEEET---TTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEET
T ss_pred cCCccCccCCEEEEC---CCceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEEC
Confidence 355689999999994 4689999999999999999999999999999999986
No 45
>2kss_A Carotenogenesis protein CARS; antirepressor, activator, carotenoid biosynthesis, transcription, transcription regulation, transcription REGU; NMR {Myxococcus xanthus}
Probab=38.58 E-value=6.7 Score=28.35 Aligned_cols=42 Identities=36% Similarity=0.693 Sum_probs=30.2
Q ss_pred CCCCCCCCcCCEEEEecCCCCeeeeE--EEeccCCCCCceEEEEEeCCCC
Q psy18049 148 PAKGGDIRLGDRVIVMSAQGSKTGVL--RFKGTTQFAQGEWCGVELDEPI 195 (204)
Q Consensus 148 ~~~~~~~~vG~RV~v~~~~~~~~GtV--ryiG~~~~~~g~w~GVElD~p~ 195 (204)
..+..+..+|..|.|.+. .+.|+| ||.|.+ |+.+|+-+|+|-
T Consensus 32 dv~gapvrig~~v~iv~~--s~~~si~~rflg~s----givv~lvfddp~ 75 (106)
T 2kss_A 32 DVDGAPVRIGAKVKVVPH--SEDGTISQRFLGQT----GIVVGLVFDDPA 75 (106)
T ss_dssp CCSSCSSCTTCEEECCSS--CSSSCCCTTTTTCE----EEEEECCCCCCT
T ss_pred ccCCCceEecceEEEecc--ccCCccChhhcCcc----ceEEEEEeCCch
Confidence 355678999999999753 455554 455544 899999999874
No 46
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=30.93 E-value=59 Score=24.54 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=36.6
Q ss_pred CCcccccEEEECC---C--ceEEEEEEeecCCCCCcEEEEEEcCCCCCCCceeCCEEeeEcCCCCeeeeecC
Q psy18049 36 DSFIIGDRVYVGG---T--KSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLT 102 (204)
Q Consensus 36 ~~l~vG~rV~v~g---~--~~G~vryiG~~~~~~g~w~GVELd~p~Gk~dGs~~G~rYF~C~~~~GiFv~~~ 102 (204)
.+|++||+|+... . +.-++.|+..-+.....++=|+.+ +| +-+...|+|=+|+.-.
T Consensus 19 ~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~----------~g-~~L~lTp~H~i~v~~~ 79 (145)
T 1at0_A 19 GELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTD----------GG-AVLTVTPAHLVSVWQP 79 (145)
T ss_dssp GGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEET----------TS-CEEEECTTCEEEEEET
T ss_pred HHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEEC----------CC-CEEEEeCCCEEEEecC
Confidence 3789999998742 2 455666664433334566767664 13 5688889998888643
No 47
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.62 E-value=53 Score=21.26 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=16.2
Q ss_pred CCCCcccccEEEEC-C---CceEEEEEE
Q psy18049 34 DTDSFIIGDRVYVG-G---TKSGRIAFI 57 (204)
Q Consensus 34 ~~~~l~vG~rV~v~-g---~~~G~vryi 57 (204)
+...|++||.|.|. | ...|+|.-+
T Consensus 4 ~~~~f~~GD~V~V~~Gpf~g~~G~V~ev 31 (59)
T 2e6z_A 4 GSSGFQPGDNVEVCEGELINLQGKILSV 31 (59)
T ss_dssp CCSSCCTTSEEEECSSTTTTCEEEECCC
T ss_pred ccccCCCCCEEEEeecCCCCCEEEEEEE
Confidence 34579999999997 3 255555433
No 48
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=28.47 E-value=70 Score=26.36 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=24.5
Q ss_pred CCCCCCCcCCEEEEecCC-----------CCeeeeE--EEeccCCC
Q psy18049 149 AKGGDIRLGDRVIVMSAQ-----------GSKTGVL--RFKGTTQF 181 (204)
Q Consensus 149 ~~~~~~~vG~RV~v~~~~-----------~~~~GtV--ryiG~~~~ 181 (204)
...+.|+|||||.|.... .++.|+| +..|.-+|
T Consensus 118 ~~~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~~g~~~~ 163 (212)
T 3a8g_B 118 VETTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEKWPF 163 (212)
T ss_dssp SCCCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECSSCBCC
T ss_pred CcCcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEeccCccC
Confidence 446789999999997632 3678888 77777654
No 49
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=27.58 E-value=45 Score=27.99 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=20.3
Q ss_pred CCcccccEEEECCCceEEEEEEeec
Q psy18049 36 DSFIIGDRVYVGGTKSGRIAFIGET 60 (204)
Q Consensus 36 ~~l~vG~rV~v~g~~~G~vryiG~~ 60 (204)
..+++||+|.+.+ ..|+|.-||-.
T Consensus 127 ~pf~vGD~I~i~~-~~G~V~~I~l~ 150 (285)
T 3udc_A 127 DQFSVGDYVTING-ISGTVEEIGLR 150 (285)
T ss_dssp TSCCTTCEEEETT-EEEEEEEECSS
T ss_pred CCccCCCEEEECC-EEEEEEEeeee
Confidence 4699999999987 58999999754
No 50
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=27.03 E-value=53 Score=27.49 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=21.0
Q ss_pred CCCCCcCCEEEEecCCCCeeeeEEEeccC
Q psy18049 151 GGDIRLGDRVIVMSAQGSKTGVLRFKGTT 179 (204)
Q Consensus 151 ~~~~~vG~RV~v~~~~~~~~GtVryiG~~ 179 (204)
..++++||+|.+. +..|+|.-+|--
T Consensus 126 ~~pf~vGD~I~i~----~~~G~V~~I~l~ 150 (285)
T 3udc_A 126 EDQFSVGDYVTIN----GISGTVEEIGLR 150 (285)
T ss_dssp TTSCCTTCEEEET----TEEEEEEEECSS
T ss_pred hCCccCCCEEEEC----CEEEEEEEeeee
Confidence 4689999999993 679999988864
No 51
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=23.80 E-value=49 Score=27.80 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.6
Q ss_pred CCcccccEEEECCCceEEEEEEeec
Q psy18049 36 DSFIIGDRVYVGGTKSGRIAFIGET 60 (204)
Q Consensus 36 ~~l~vG~rV~v~g~~~G~vryiG~~ 60 (204)
..+++||+|.+.+ ..|+|.-||-.
T Consensus 128 ~pf~vGD~I~i~g-~~G~V~~I~l~ 151 (286)
T 2vv5_A 128 RPFRAGEYVDLGG-VAGTVLSVQIF 151 (286)
T ss_dssp CSSCTTCEEESSS-CEEEEEEECSS
T ss_pred CCccCCCEEEECC-EEEEEEEEEeE
Confidence 4799999999987 69999999764
No 52
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=21.79 E-value=3.5e+02 Score=22.47 Aligned_cols=75 Identities=21% Similarity=0.459 Sum_probs=51.4
Q ss_pred cCCCCCcccccEEEEC-----CCceEEEEEEeecCCC-CC-cEEEEEEcCCCCC-CCceeCCEEeeEcCCCCeeeeecCc
Q psy18049 32 TEDTDSFIIGDRVYVG-----GTKSGRIAFIGETKFA-PG-DWAGVVLDDPVGK-NDGQVGQARYFQCEPKHGIFSRLTR 103 (204)
Q Consensus 32 ~~~~~~l~vG~rV~v~-----g~~~G~vryiG~~~~~-~g-~w~GVELd~p~Gk-~dGs~~G~rYF~C~~~~GiFv~~~k 103 (204)
..+...+++|+.|.|. ..+.|+|.+|++.... .+ .-+=++++++.++ ..|.+-- -.|......++.||.+-
T Consensus 216 e~~~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~~~-v~i~~~~~~~l~vP~~A 294 (359)
T 3lnn_A 216 EKDLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMFAQ-ATFLSQPHEGIVVPMSA 294 (359)
T ss_dssp GGGSTTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCEEE-EEEECCCEEEEEEEGGG
T ss_pred HHHHhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCEEE-EEEecCCCCceEeCHHH
Confidence 3455678999999885 2479999999987543 33 3455788887653 5565533 34455677788888888
Q ss_pred ceec
Q psy18049 104 LTRT 107 (204)
Q Consensus 104 v~~~ 107 (204)
|...
T Consensus 295 v~~~ 298 (359)
T 3lnn_A 295 IVQS 298 (359)
T ss_dssp CEET
T ss_pred hecc
Confidence 8764
No 53
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=21.71 E-value=1.2e+02 Score=30.99 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=45.4
Q ss_pred CCCcccccEEEE-C--C----CceEEEEEEeecCCCCCcEEEEEEcCCC-CCCCceeCCEEeeEcCCCCeeeeecCccee
Q psy18049 35 TDSFIIGDRVYV-G--G----TKSGRIAFIGETKFAPGDWAGVVLDDPV-GKNDGQVGQARYFQCEPKHGIFSRLTRLTR 106 (204)
Q Consensus 35 ~~~l~vG~rV~v-~--g----~~~G~vryiG~~~~~~g~w~GVELd~p~-Gk~dGs~~G~rYF~C~~~~GiFv~~~kv~~ 106 (204)
...|.+||||.. . | ..+|||-=|-.+ .....+-|-+|++. |-+ +++| +|++.+|.=|+.+.|.-
T Consensus 1063 ~Q~F~LGDRVv~VqdsG~VPl~~kGTVVGi~~~--~~~~~ldVvFD~~F~~G~--tlgg----rcs~~RG~~v~~s~lLN 1134 (1155)
T 3pie_A 1063 SQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSI--GKNVSIQVLFDNEIIAGN--NFGG----RLQTRRGLGLDSSFLLN 1134 (1155)
T ss_pred CCcccCCCeEEEecCCCCCccccceEEEEEecC--CCceEEEEEeccCccCCC--cccc----cccccccccccHHHeEE
Confidence 457999999954 3 2 257888655433 34677888999985 333 2333 39999999999888765
Q ss_pred c
Q psy18049 107 T 107 (204)
Q Consensus 107 ~ 107 (204)
.
T Consensus 1135 l 1135 (1155)
T 3pie_A 1135 L 1135 (1155)
T ss_pred c
Confidence 4
No 54
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=21.48 E-value=58 Score=27.33 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=21.1
Q ss_pred CCCCCcCCEEEEecCCCCeeeeEEEeccC
Q psy18049 151 GGDIRLGDRVIVMSAQGSKTGVLRFKGTT 179 (204)
Q Consensus 151 ~~~~~vG~RV~v~~~~~~~~GtVryiG~~ 179 (204)
..++++||+|.+. +..|+|.-+|--
T Consensus 127 ~~pf~vGD~I~i~----g~~G~V~~I~l~ 151 (286)
T 2vv5_A 127 FRPFRAGEYVDLG----GVAGTVLSVQIF 151 (286)
T ss_dssp TCSSCTTCEEESS----SCEEEEEEECSS
T ss_pred cCCccCCCEEEEC----CEEEEEEEEEeE
Confidence 4789999999984 589999998865
Done!