RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18049
(204 letters)
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Length = 95
Score = 110 bits (278), Expect = 3e-32
Identities = 47/92 (51%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
Query: 25 SDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVG 84
S +++V + F++G+RV+V G K G + ++GET+FAPG WAGVVLDDPVGKNDG VG
Sbjct: 6 SGAAEVGDDFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVG 65
Query: 85 QARYFQCEPKHGIFSRLTRLTRTPLDLPPPAT 116
RYF+C GIF+R ++LTR P P++
Sbjct: 66 GVRYFECPALQGIFTRPSKLTRQP---SGPSS 94
Score = 72.1 bits (177), Expect = 4e-17
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 137 SFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIG 196
S + G GD +G+RV V G K GV+++ G TQFA G+W GV LD+P+G
Sbjct: 2 SSGSSGAAEVGDDFLGDFVVGERVWV---NGVKPGVVQYLGETQFAPGQWAGVVLDDPVG 58
Query: 197 KNDG 200
KNDG
Sbjct: 59 KNDG 62
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein,
CAP Gly protein complex, structural PR; HET: BME; 1.75A
{Homo sapiens} PDB: 2qk0_A
Length = 72
Score = 109 bits (274), Expect = 9e-32
Identities = 45/71 (63%), Positives = 56/71 (78%)
Query: 36 DSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKH 95
D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQCEP
Sbjct: 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 60
Query: 96 GIFSRLTRLTR 106
GIF+R ++LTR
Sbjct: 61 GIFTRPSKLTR 71
Score = 72.6 bits (179), Expect = 2e-17
Identities = 28/48 (58%), Positives = 35/48 (72%), Gaps = 3/48 (6%)
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
D R+G+RV V G+K G ++F G TQFA G+W G+ LDEPIGKNDG
Sbjct: 2 DFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDG 46
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Length = 86
Score = 108 bits (273), Expect = 2e-31
Identities = 46/84 (54%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 36 DSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKH 95
D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQCEP
Sbjct: 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 60
Query: 96 GIFSRLTRLTRTPLDLPPPATPTP 119
GIF+R ++LTR A
Sbjct: 61 GIFTRPSKLTRKV-QAEDEANGLQ 83
Score = 71.6 bits (176), Expect = 5e-17
Identities = 28/48 (58%), Positives = 35/48 (72%), Gaps = 3/48 (6%)
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
D R+G+RV V G+K G ++F G TQFA G+W G+ LDEPIGKNDG
Sbjct: 2 DFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDG 46
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB:
2e4h_A
Length = 90
Score = 107 bits (270), Expect = 5e-31
Identities = 43/84 (51%), Positives = 57/84 (67%)
Query: 38 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGI 97
IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+PK+G+
Sbjct: 2 LKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGL 61
Query: 98 FSRLTRLTRTPLDLPPPATPTPGA 121
F+ + ++T+ PA A
Sbjct: 62 FAPVHKVTKIGFPSTTPAKAKANA 85
Score = 72.0 bits (177), Expect = 4e-17
Identities = 31/48 (64%), Positives = 40/48 (83%), Gaps = 3/48 (6%)
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
++++GDRV+V G+K GV+RF G T FA+GEWCGVELDEP+GKNDG
Sbjct: 1 ELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDG 45
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing,
ANK repeat, protein binding, structural genomics,
NPPSFA; 2.50A {Homo sapiens}
Length = 96
Score = 106 bits (266), Expect = 2e-30
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 32 TEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQC 91
+ +G+RV V G + G I F G T FAPG W G+ L+ P GKNDG VG +YF C
Sbjct: 5 SSGEGELRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSC 64
Query: 92 EPKHGIFSRLTRLTRTPLDLPPPATPTPGARG 123
P++GIF+ +R+ R L + + + G
Sbjct: 65 SPRYGIFAPPSRVQRVTDSLDTLSEISGPSSG 96
Score = 73.2 bits (180), Expect = 2e-17
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 144 GLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
G S + G++RLG+RV+V G + G +RF GTT FA G W G+EL++P GKNDG
Sbjct: 1 GSSGSSGEGELRLGERVLV---VGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDG 54
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 107 bits (269), Expect = 3e-30
Identities = 49/86 (56%), Positives = 62/86 (72%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
S + SS+ E D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG
Sbjct: 50 SSTPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS 109
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRTP 108
V RYFQCEP GIF+R ++LTR
Sbjct: 110 VAGVRYFQCEPLKGIFTRPSKLTRKV 135
Score = 74.6 bits (183), Expect = 2e-17
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 106 RTPLDLPPPATPTPGARGDGFISPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSA 165
+ P + P + + S S+ + D R+G+RV V
Sbjct: 17 KAPTKILKPGSTALKTPTAVVAPVEKTISSEKASSTPSSETQEEFVDDFRVGERVWV--- 73
Query: 166 QGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
G+K G ++F G TQFA G+W G+ LDEPIGKNDG
Sbjct: 74 NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDG 108
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton
associated protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 95
Score = 105 bits (264), Expect = 5e-30
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
S S L +GDRV + G K+G + F G T+FA G W GV LD+P GKNDG
Sbjct: 2 SSGSSGGNLMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGS 61
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRTPLDLPPPAT 116
VG RYF C PK G+F+ ++++++ D P++
Sbjct: 62 VGGVRYFICPPKQGLFASVSKISKAV-DASGPSS 94
Score = 72.1 bits (177), Expect = 4e-17
Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 139 STPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKN 198
S+ G + +RLGDRV++ G KTG LRF GTT+FA G+W GVELDEP GKN
Sbjct: 2 SSGSSGGNLMLSALGLRLGDRVLL---DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKN 58
Query: 199 DG 200
DG
Sbjct: 59 DG 60
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 84
Score = 105 bits (263), Expect = 5e-30
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 32 TEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQC 91
+ + +GDRV VGGTK+G + ++GET FA G+W GV LD+P+GKNDG V RYFQC
Sbjct: 2 SSGSSGLRLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQC 61
Query: 92 EPKHGIFSRLTRLTRTPLDLPPPA 115
PK G+F+ + ++ R P
Sbjct: 62 PPKFGLFAPIHKVIRIG-SGPSSG 84
Score = 70.4 bits (173), Expect = 1e-16
Identities = 33/48 (68%), Positives = 40/48 (83%), Gaps = 3/48 (6%)
Query: 153 DIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
+RLGDRV+V G+KTGV+R+ G T FA+GEWCGVELDEP+GKNDG
Sbjct: 7 GLRLGDRVLV---GGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDG 51
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding,
cytoskeleton associated protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 122
Score = 105 bits (263), Expect = 1e-29
Identities = 37/96 (38%), Positives = 51/96 (53%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
S S +S ++ F IGDRV +G + G + F GET FA G WAGV LD P G N+G
Sbjct: 17 SPSLASVPTADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGT 76
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRTPLDLPPPATPT 118
YF+C+ KHGIF+ +++ P +
Sbjct: 77 YDGIAYFECKEKHGIFAPPQKISHIPENFDDYVDIN 112
Score = 75.7 bits (186), Expect = 4e-18
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 128 SPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWC 187
S + ++ S + T + D +GDRV++ + G+LRFKG T FA+G W
Sbjct: 6 SGVEHEQQVTESPSLASVPTADELFDFHIGDRVLI---GNVQPGILRFKGETSFAKGFWA 62
Query: 188 GVELDEPIGKNDG 200
GVELD+P G N+G
Sbjct: 63 GVELDKPEGNNNG 75
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton
associated protein, KIAA0639, kinesin-like protein
gakin, structural genomics; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 100
Score = 104 bits (262), Expect = 1e-29
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
+++ S+ E + G+ V VG K+G + ++G F G W GV LD P GKNDG
Sbjct: 9 ALASDSEEADEVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGS 68
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRTP 108
+G +YF+C P +G+ R +R+ R
Sbjct: 69 IGGKQYFRCNPGYGLLVRPSRVRRAT 94
Score = 72.5 bits (178), Expect = 3e-17
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 131 GSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVE 190
GS+ S + +R G+ V V KTGV+R+ G F +G W GVE
Sbjct: 1 GSSGSSGQALASDSEEADEVPEWLREGEFVTV---GAHKTGVVRYVGPADFQEGTWVGVE 57
Query: 191 LDEPIGKNDG 200
LD P GKNDG
Sbjct: 58 LDLPSGKNDG 67
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 106 bits (266), Expect = 2e-29
Identities = 47/128 (36%), Positives = 72/128 (56%)
Query: 22 VSISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDG 81
+S + + + IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG
Sbjct: 23 ISNLSEAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDG 82
Query: 82 QVGQARYFQCEPKHGIFSRLTRLTRTPLDLPPPATPTPGARGDGFISPTGSARSLSFSTP 141
V RYFQC+PK+G+F+ + ++T+ PA A + + S + ++
Sbjct: 83 AVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVMATTSASLKRSPSASS 142
Query: 142 GPGLSTPA 149
+S+ A
Sbjct: 143 LSSMSSVA 150
Score = 72.0 bits (176), Expect = 4e-16
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 127 ISPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEW 186
IS S S S S ++++GDRV+V G+K GV+RF G T FA+GEW
Sbjct: 12 ISNLTKTASESISNLSEAGSIKKGERELKIGDRVLV---GGTKAGVVRFLGETDFAKGEW 68
Query: 187 CGVELDEPIGKNDG 200
CGVELDEP+GKNDG
Sbjct: 69 CGVELDEPLGKNDG 82
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 91
Score = 102 bits (256), Expect = 7e-29
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 27 SSQVLTEDTDSFIIGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 85
SS E T G +V + + + ++G T FA G W G+ L GKNDG VG
Sbjct: 2 SSGSSGEGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGD 61
Query: 86 ARYFQCEPKHGIFSRLTRLTRTPLDLPPPA 115
RYF C+P +G+ R +R+T + P
Sbjct: 62 KRYFTCKPNYGVLVRPSRVTYRGISGPSSG 91
Score = 69.7 bits (171), Expect = 3e-16
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 146 STPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
S+ + G +V++ S ++ +R+ G T FA G W G+EL GKNDG
Sbjct: 5 SSGEGTVKLHEGSQVLLTS--SNEMATVRYVGPTDFASGIWLGLELRSAKGKNDG 57
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 102
Score = 102 bits (256), Expect = 1e-28
Identities = 35/91 (38%), Positives = 55/91 (60%)
Query: 25 SDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVG 84
++ + +GDRV + G K G + F G T+FA G WAG+ LD+P GKN+G VG
Sbjct: 12 DHTTSRAMLTSLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVG 71
Query: 85 QARYFQCEPKHGIFSRLTRLTRTPLDLPPPA 115
+ +YF+C PK+GIF+ L+++++ P
Sbjct: 72 RVQYFKCAPKYGIFAPLSKISKLKDSGPSSG 102
Score = 72.5 bits (178), Expect = 3e-17
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 128 SPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWC 187
S S S T + T ++LGDRV++ G K G LRF GTT+FA G+W
Sbjct: 2 SSGSSGLPNSDHTTSRAMLTSL---GLKLGDRVVI---AGQKVGTLRFCGTTEFASGQWA 55
Query: 188 GVELDEPIGKNDG 200
G+ELDEP GKN+G
Sbjct: 56 GIELDEPEGKNNG 68
>1txq_A Dynactin 1; protein complex, structural protein/protein binding
complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB:
2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Length = 93
Score = 101 bits (254), Expect = 1e-28
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 27 SSQVLTEDTDSFIIGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 85
S +G RV V G G +A++G T FA G W GV+LD+ GKNDG V
Sbjct: 2 SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQG 61
Query: 86 ARYFQCEPKHGIFSRLTRLTRTPLDLPPPATP 117
+YF C+ HGIF R +++ D +P
Sbjct: 62 RKYFTCDEGHGIFVRQSQIQVFE-DGADTTSP 92
Score = 73.2 bits (180), Expect = 2e-17
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 142 GPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
G +S A +R+G RV V+ G + + G T FA G+W GV LDE GKNDG
Sbjct: 1 GSRMSAEASARPLRVGSRVEVIG--KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDG 57
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Mus musculus}
SCOP: b.34.10.1
Length = 102
Score = 101 bits (254), Expect = 2e-28
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 23 SISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
S + + +GD+V V G K G + F G+T FAPG W G+ LD P GK+DG
Sbjct: 11 SSPSLGSLQQREGAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGS 70
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRTPLDLPPPA 115
V RYF C P+HG+F+ +R+ R P
Sbjct: 71 VFGVRYFTCAPRHGVFAPASRIQRIG-SGPSSG 102
Score = 75.2 bits (185), Expect = 3e-18
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 131 GSARSLSFSTPGPGLSTPAK--GGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCG 188
GS+ S S P L + + G +GD+V+V G K G++RF G T FA G W G
Sbjct: 1 GSSGSSGKSPSSPSLGSLQQREGAKAEVGDQVLV---AGQKQGIVRFYGKTDFAPGYWYG 57
Query: 189 VELDEPIGKNDG 200
+ELD+P GK+DG
Sbjct: 58 IELDQPTGKHDG 69
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural
genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI;
1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB:
1tov_A
Length = 95
Score = 100 bits (250), Expect = 7e-28
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 27 SSQVLTEDTDSFIIGDRVYV----GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 82
S ++ E + ++G+R V + G +A++G TKF G W GV D+PVGKNDG
Sbjct: 1 SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGS 60
Query: 83 VGQARYFQCEPKHGIFSRLTRLTRTPLDLPP 113
V RYF C+PK+G F R + D P
Sbjct: 61 VAGVRYFDCDPKYGGFVRPVDV--KVGDFPE 89
Score = 72.4 bits (178), Expect = 3e-17
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 150 KGGDIRLGDRVIV-MSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
+I +G+R V + AQ ++ G + + G T+F +G W GV+ DEP+GKNDG
Sbjct: 8 AAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDG 59
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein,
P150- glued, DAP-150, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 112
Score = 99.1 bits (247), Expect = 2e-27
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 25 SDSSQVLTEDTDSFIIGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQV 83
S S +G RV V G G +A++G T FA G W GV+LD+ GKNDG V
Sbjct: 21 SGSRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTV 80
Query: 84 GQARYFQCEPKHGIFSRLTRLTRTPLDLPPPAT 116
+YF C+ HGIF R +++ + P++
Sbjct: 81 QGRKYFTCDEGHGIFVRQSQI--QVFEDSGPSS 111
Score = 72.9 bits (179), Expect = 3e-17
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 132 SARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVEL 191
S + G +S A +R+G RV V+ G + + G T FA G+W GV L
Sbjct: 12 KRHVYSRTPSGSRMSAEASARPLRVGSRVEVIG--KGHRGTVAYVGATLFATGKWVGVIL 69
Query: 192 DEPIGKNDG 200
DE GKNDG
Sbjct: 70 DEAKGKNDG 78
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 104
Score = 93.3 bits (232), Expect = 3e-25
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 25 SDSSQVLTEDTDSFIIGDRVYVGGTKS--GRIAFIGETKFAPGDWAGVVLDDPV-GKNDG 81
S + ++ +G V G I +IG+ AG+ L+D G DG
Sbjct: 5 SSGLAMPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDG 64
Query: 82 QVGQARYFQCEPKHGIFSRLTRLTRTP-LDLPPPATPTPG 120
RYF C K +F +L P+ P+ G
Sbjct: 65 TFRGTRYFTCALKKALFVKLKSCRPDSRFASLQPSGPSSG 104
Score = 64.0 bits (156), Expect = 7e-14
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 131 GSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVE 190
GS+ S + P P + +G V GV+R+ G G+E
Sbjct: 1 GSSGSSGLAMP------PGNSHGLEVGSLAEV-KENPPFYGVIRWIGQPPGLNEVLAGLE 53
Query: 191 LDEPI-GKNDG 200
L++ G DG
Sbjct: 54 LEDECAGCTDG 64
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton
associated protein, ckapi, structural genomics; NMR {Mus
musculus} SCOP: b.34.10.1
Length = 113
Score = 89.2 bits (221), Expect = 2e-23
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 33 EDTDSFIIGDRVYV----GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARY 88
+ +G R V + G + ++G T F PG W GV D+P+GKNDG V RY
Sbjct: 28 AQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRY 87
Query: 89 FQCEPKHGIFSRLTRLTRTPLDLPPPA 115
F+C+ K+G F + + +T D P +
Sbjct: 88 FECQAKYGAFVKPSAVTV--GDSGPSS 112
Score = 69.6 bits (170), Expect = 7e-16
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 123 GDGFISPTGSARSLSFSTPGPGLSTP-AKGGDIRLGDRVIVMSAQGS-KTGVLRFKGTTQ 180
G S R+ + LS A+ I +G R V + S + G + + G T
Sbjct: 1 GSSGSSGNEELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTD 60
Query: 181 FAQGEWCGVELDEPIGKNDG 200
F G W GV DEP+GKNDG
Sbjct: 61 FKPGYWVGVRYDEPLGKNDG 80
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.10.1
Length = 95
Score = 77.9 bits (192), Expect = 3e-19
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 40 IGDRVYV-----GGTKSGRIAFIG---ETKFAPGDWAGVVLDD---PVGKNDGQVGQARY 88
+G V V G + F G + G + GV L + G DG +
Sbjct: 10 VGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQL 69
Query: 89 FQCEPKHGIFSRLTRLTRTPLDLPPPA 115
FQC+ G+F L +L ++ P +
Sbjct: 70 FQCDEDCGVFVALDKL--ELIESGPSS 94
Score = 54.0 bits (130), Expect = 3e-10
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 153 DIRLGDRVIVMSAQGSK--TGVLRFKGT---TQFAQGEWCGVELDE---PIGKNDG 200
I +G V V G + GV+RF+G + G + GVEL E G DG
Sbjct: 7 GIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDG 62
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.10.1
Length = 92
Score = 50.6 bits (120), Expect = 5e-09
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 146 STPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGT--TQFAQGEWCGVELDEPIGKNDG 200
S+ + G + + RV + + ++G + F + + G + GV++D PIG DG
Sbjct: 2 SSGSSGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDG 58
Score = 45.6 bits (107), Expect = 4e-07
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 38 FIIGDRVYVG---GTKSGRIAFIGE--TKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCE 92
I RV + +SG + F K + G + GV +D+P+G DG+ +
Sbjct: 10 LEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFA 69
Query: 93 -PKHGIFSRLTRLTRTPLDLPPPATPTPGA 121
+ I + + P + P +
Sbjct: 70 CVESTILLHINDII--------PESSGPSS 91
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 29.2 bits (65), Expect = 0.83
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 152 GDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
+ G+ V++ + L K + + ++ DE IGK +G
Sbjct: 2 NSFKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSV---LKFDEVIGKPEG 47
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 29.5 bits (67), Expect = 0.85
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 93 PKHGIFSRLTRLTRTPLDLPPPAT 116
P + L P PPP
Sbjct: 430 PLDPVLCTLRPRGWQPAPPPPPCH 453
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Length = 511
Score = 28.5 bits (62), Expect = 1.5
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 62 FAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPKHGIFSRLTRLTRTPLDLPPPATPTPGA 121
PG +G+ P G D Q GI R+ + L+ + +
Sbjct: 33 VKPGGSSGLAPSMPPGWGDYSPQGIALVQSVLFPGIIRRI--ILDKELEEGDWSGWSVSV 90
Query: 122 RGDGFISPTGSARSLSFSTPGPGLSTPAK 150
+AR++ + GL P++
Sbjct: 91 HSPWGNEKVSAARTVLENGLRGGLPEPSR 119
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 28.3 bits (64), Expect = 1.7
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 18/57 (31%)
Query: 112 PPPATPTPGARGDGFISPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGS 168
PG G + +G I+ GDRV+ + G
Sbjct: 75 KMEPPFVPGIETAGVVRSAP------------------EGSGIKPGDRVMAFNFIGG 113
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 28.4 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 154 IRLGDRVIVMSAQGSKTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
IR GD+V+++ +G + + K G ++L+E IG+N G
Sbjct: 2 IREGDKVVLVDPRGKRYLITVSKRDFHTDLGI---LKLEEIIGRNFG 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 27.5 bits (61), Expect = 3.2
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 89 FQCEPKHGIFSRLTRLTRTPLDL 111
F P F LT+LT L L
Sbjct: 133 FDVLPVCKEFGNLTKLTF--LGL 153
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 27.0 bits (59), Expect = 4.5
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 112 PPPATPTPGARGDGFISPTGSARSLSFSTPGPGLSTPAKGG 152
PPP P G D + R L GPG ++ A
Sbjct: 51 PPPPAPAAGNPPDTVTGDSVLQRIL-RGPTGPGTTSLAPAV 90
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 26.3 bits (57), Expect = 6.9
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 149 AKGGDIRLGDRVIVMSAQGSK-TGVLRFKGTTQFAQGEWCGVELDEPIGKNDGN 201
+ G +G+RV + A+G + T L +G + D IG G+
Sbjct: 2 SATGPFSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGS---IAHDAVIGLEQGS 52
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 26.3 bits (57), Expect = 7.0
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 146 STPAKGGDIRLGDRVIVMSAQGS----KTGVLRFKGTTQFAQGEWCGVELDEPIGKNDG 200
S+ ++ + G+ ++ + +G K L G G V + +GK G
Sbjct: 2 SSTSRERPFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGA---VPFGKIVGKFPG 57
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 26.4 bits (58), Expect = 7.5
Identities = 6/58 (10%), Positives = 13/58 (22%), Gaps = 8/58 (13%)
Query: 16 FQNCFLVSISDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLD 73
+ N ++ + GRI + + G + D
Sbjct: 9 WLNVTPATLRSDLADYGLLEPHALG--------VHEGRIHALVPMQDLKGPYPAHWQD 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 8.0
Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 52/118 (44%)
Query: 70 VVLDDPVGK---NDGQVGQARYFQCEPKHGIFSRLTRLT-RTPLDLPPPATPTPGARGDG 125
+V+++PV G+ G+ I + + T +D
Sbjct: 1664 IVINNPVNLTIHFGGEKGKR----------IRENYSAMIFETIVDGKLKTEKI------- 1706
Query: 126 FISPTGSARSLSFSTPGPGLSTPAKGGDIRLGDRVIVMSAQGSKTGVLRFKGTTQFAQ 183
F + S +F + G+L TQF Q
Sbjct: 1707 FKEINEHSTSYTFRSE----------------------------KGLLSA---TQFTQ 1733
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.137 0.416
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,120,887
Number of extensions: 190240
Number of successful extensions: 647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 67
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.8 bits)